CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007033	Dehalobacter restrictus DSM 9455 strain PER-K23 chromosome, complete genome	1 crisprs	cas3,csa3,DinG,PrimPol	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007033_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007033_1

1953905-1954060

Orphan

Consensus_repeat	Method
TAGCTTTGCGTCCCTGCTTTTCAACAGGTTTGCCATTGTCAGTAATAAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007033_1

>merge|NZ_CP007033|1|1953905-1954060|CRISPRCasFinder
TAGCTTTGCGTCCCTGCTTTTCAACAGGTTTGCCATTGTCAGTAATAAGTTAGACAAAAACAAAAAACTTAATTTTGGTAACTGGCTGCCATTTTACAGGCCCTCTAGCTTTGCGTCCCTGCTTTTCAACAGGTTTGCCATTGTCAGTAATAAGTT

>NZ_CP007033|1|1|1953905-1954060|CRISPRCasFinder
TAGCTTTGCGTCCCTGCTTTTCAACAGGTTTGCCATTGTCAGTAATAAGTT	AGACAAAAACAAAAAACTTAATTTTGGTAACTGGCTGCCATTTTACAGGCCCTC
TAGCTTTGCGTCCCTGCTTTTCAACAGGTTTGCCATTGTCAGTAATAAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007033.1\|WP_025205857.1\|1947597_1948122_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP007033.1\|WP_025205859.1\|1948791_1950306_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP007033.1\|WP_158208299.1\|1945621_1945762_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007033.1\|WP_025205864.1\|1955278_1956883_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367090
NZ_CP007033.1\|WP_158407245.1\|1963458_1964703_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP007033.1\|WP_025205860.1\|1950298_1951039_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP007033.1\|WP_158407244.1\|1951743_1953813_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367090
NZ_CP007033.1\|WP_025205863.1\|1954122_1955211_-\|Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|227779
NZ_CP007033.1\|WP_025205871.1\|1964733_1965828_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
NZ_CP007033.1\|WP_025205865.1\|1956971_1958075_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|379721
NZ_CP007033.1\|WP_144284045.1\|1948166_1948715_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007033.1\|WP_025205854.1\|1944620_1945511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275080
NZ_CP007033.1\|WP_025205856.1\|1947249_1947516_-\|PqqD-family-protein	unknown	unknown	gnl\|CDD\|377508
NZ_CP007033.1\|WP_025205855.1\|1946082_1947216_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223609
NZ_CP007033.1\|WP_025205868.1\|1960994_1961972_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187563
NZ_CP007033.1\|WP_025205867.1\|1958841_1959513_-\|LPS-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP007033.1\|WP_025205866.1\|1958071_1958824_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP007033.1\|WP_025205872.1\|1966134_1967352_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP007033.1\|WP_025205869.1\|1962000_1963458_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP007033.1\|WP_158407243.1\|1951413_1951554_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007033.1\|WP_025205857.1\|1947597_1948122_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.13036e-09
NZ_CP007033.1\|WP_025205859.1\|1948791_1950306_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.04671e-21
NZ_CP007033.1\|WP_025205865.1\|1956971_1958075_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	2.60611e-49
NZ_CP007033.1\|WP_158407245.1\|1963458_1964703_-\|hypothetical-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	5.63322e-08
NZ_CP007033.1\|WP_025205860.1\|1950298_1951039_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.06981e-57
NZ_CP007033.1\|WP_158407244.1\|1951743_1953813_-\|hypothetical-protein	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	7.73932e-07
NZ_CP007033.1\|WP_025205863.1\|1954122_1955211_-\|Ig-domain-containing-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	1.47795e-13
NZ_CP007033.1\|WP_025205871.1\|1964733_1965828_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	2.61245e-88
NZ_CP007033.1\|WP_025205864.1\|1955278_1956883_-\|hypothetical-protein	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	5.69581e-07
NZ_CP007033.1\|WP_025205869.1\|1962000_1963458_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.10429e-92
NZ_CP007033.1\|WP_025205854.1\|1944620_1945511_-\|hypothetical-protein	gnl\|CDD\|275080	TIGR04249, SCM_chp_ScmC, SynChlorMet cassette protein ScmC. A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Members of this family are designated ScmC.	1.88837e-05
NZ_CP007033.1\|WP_025205856.1\|1947249_1947516_-\|PqqD-family-protein	gnl\|CDD\|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	1.96177e-13
NZ_CP007033.1\|WP_025205855.1\|1946082_1947216_-\|radical-SAM-protein	gnl\|CDD\|223609	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only].	2.97219e-34
NZ_CP007033.1\|WP_025205868.1\|1960994_1961972_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.06678e-145
NZ_CP007033.1\|WP_025205866.1\|1958071_1958824_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	5.03969e-62
NZ_CP007033.1\|WP_025205872.1\|1966134_1967352_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.97312e-22
NZ_CP007033.1\|WP_025205867.1\|1958841_1959513_-\|LPS-biosynthesis-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	7.32613e-37

>NZ_CP007033.1|WP_158407244.1|1951743_1953813_-|hypothetical-protein
MLITISLILVLVAPTTLAGSEPSVSSQRLQDDFSAYVAGSDGSPQWITDDISWEVNNGCFENNSLKKSFAKYDSTVGTDLTFESEVTIQVSQGDKYKSAGISVYSDNNNYWSLALVEGPEAKNEMHYIELQEMFNGQWCVQDYGETKLKVGSYVGDGIEWKYNQPYVLKISLNNKSITGVVCELDGKKIWEKEYIFSSENCTKKGIPALTSAAVETKYDNAKCTINKKVYEVNAVSSYPELKIETDTTISGKKTGFFHTQKIGDKWWVIAPNGNGFIAVGTQRMTYKGIYSEALGYSPYEQNVKSIYGSEEEWAENTAERLNSWGFNLLGIDSAPSLRYRGLAHTVSFGFGSSFSKYGEDYVIYGLDASNHCFPNVFSPKFEYYCDDLARKVIQEDQNDPWLFGYYLDNELSWWGQSFDTTYGLTDLVIKKDKTHTAKIALINWLQNRYGNISSLNKAWGTDYPSFETLGKMTLFTGKNQLAINTDKTDFEKAIIEKYYTITTGAIKKYDKNHMILGSRNACGTEKCYDLVWGIGRNYTDISTFNYYGKVDLQAETAYDQIKVNGVYQNVELSEIFAQIYNKAKQPIMISEWSFPAYDSGLPCTVGAGMRVDTQTERAKAYEIYQKALFNMPFLVGSEFFMWVDPPAEGLTKSYKLDTNYGLVNEKDEPYALVTSVAKATNGNVYSLRN
>NZ_CP007033.1|WP_158407243.1|1951413_1951554_-|hypothetical-protein
MEYIELRAEESLACTASTTIEIPVPSDLGNNGNHNGWGKGNGRGRH
>NZ_CP007033.1|WP_025205860.1|1950298_1951039_+|ATP-binding-protein
MNERIERVNALVSGLHLPAVDIERLYAKKNNLTPLESIEVFLTEQQRLRTEKQNLIRRRRANLPAEKTLETFDFGFQRSVSKEQMLRLFDMTWVEQAFNICFLGPPGIGKSHLALSLAVQALNLGYAAAFTTLDELMITLKTSQISTASNRRIKILNSAALVIIDEVGFMPLSTTEANLFFGFVSSMSEKTSLIITSNKGFDEWADFLGDATITTAILDRLIHHCEIINMTGNSYRLQHRKTITQL
>NZ_CP007033.1|WP_025205859.1|1948791_1950306_+|IS21-family-transposase
MKGFKMYKEIQQLKEIGFTRSRAAKQLNINRETVTRYWNMTADEFAKQLYSISREMLLSKYEEIITGWLRQYPTMTAAQVCDWLKEHYKEDIKERTVSRYVKGLREEYNLKKSNHPRDYEAVEELPMGQQLQVDFGEKWMQSIGGGRVKIRFAAFVLAHARYKWAFFQTRPFTTNDLVSNCHECFRYMGGMPLELVFDQDSIVSVSENYGDIIHTFEFEKFRQECNLKVYLCRAADPESKGKIENVVKFIKYNFLENRLFADEEVLNSSFLNWLDRTGNAKIHGTTKKVPAKVFEDEREHLIPLLDIRSNSDVPIYRNVRKDNTIVYDSNRYSLPLGTYNNQKEVSIEAKSGKLTIMTVFGEFIYEHPISTGRGQLIKSTSHSRDVTDSVDEAQNTVDELLLFKATDFLKTIRTEKARYARDQFRLLQTLCDKYRIDEVLNAIKYCEVSKLFGITYVKDFLEHSVKPKQVIVLNTIPVSNSKYHVTTEKRSLDVYAKAGGIHHE
>NZ_CP007033.1|WP_144284045.1|1948166_1948715_-|hypothetical-protein
MLAKSCMLCGRNLYAFIGVNRYALYYHSHYPTSIYLTDDTTGKVIARADANADWSRDEITYAGNEQMINPIVSGFIMEILFHNRLLFKHGWSGSKTLYFNGSAPLQAIVLLEQAPENQITRIPVAQAAAKITPRCFLPYYDQSIMAMCLHTLSEVLSGVGVYSLKCRPDREAVEMLQHCLVH
>NZ_CP007033.1|WP_025205857.1|1947597_1948122_-|VanZ-family-protein
MKSSIIRRIIGTVGLFIVLVFLVFLSWKLSSQTGTQSNHLSIRIADQMIDWLDRYFDLDRGDMFWKVTFNQLLRKAAHFIEYALIGTVMCIMLNIAFNRVVPAAVFSVLLSPLFGIIDEYHQRFSAMRTSRILDICIDTAGVLTGVLLVTLLFGIVHYIKKLKRRIWELEQRNK
>NZ_CP007033.1|WP_025205856.1|1947249_1947516_-|PqqD-family-protein
MKLKEGFLLREVAGQWVVVPLGERVVEFNGIMTLSESGALLWGKLKEGTTEEELLQVLMAEYSVDEDIAKKDIQEFIQSIKDKGLIEA
>NZ_CP007033.1|WP_025205855.1|1946082_1947216_-|radical-SAM-protein
MAKTWNELYLNLALESKKRKEFIASSFELTARCNLQCKMCYVRYAANDKQAKAKELTTEQWVRLAEEARDAGLLFLTLTGGEVLLRKDFKELYEKLMNLGLIIKIFTNGTLITPEFVNWLSRIPPKLVSITLYGASRDTYKKVTGFADGYDRATRAVDLLMDKGIPTEIKTTVTQYNRADFDEIHNFALKRKCVLGVVNYIAPVREGCNTASCECRLSPEELLNFEIHMTERGKIGFDNEIIGETEKTVNPNDDAVAEAMREILASKAQTDENFAFQCMSGSCTGWVNWDGSMAPCGIMGEPKVYPLISGFQNAWVELKQKCAQIPVCKACKECEYQVLCEHCPGRLYQETGSYDKPAPYLCELAKRRTDYNNQKNN
>NZ_CP007033.1|WP_158208299.1|1945621_1945762_-|hypothetical-protein
MKQYNKPEFEFVQLSSEDEFAVVQQGSVCDYVGICIIDGVQPRTNA
>NZ_CP007033.1|WP_025205854.1|1944620_1945511_-|hypothetical-protein
MPKYQVAGLVIHMDESTPAELFEGLIDYNVSEPQAADLCFTYQTSEQIDLPQGENFSDESSGYKCIKKPNAAGFYFYTRKYGSVEEILVLLDIDAAWRNVGLTCAAIQEKNELEESYVRMKLRHTAFTLMGIVFRHALLKQQGLVIHASAIKWQDKAIMFTAPSGTGKSTQSRLWQEHKENVLVLNDDNPAVRIMEDHVIVYGTPWSGSSNINTNDSAPLSAVIILEQAAENSIRRMDLREAIIQFMPRAFLPFFDQEHMNEAMRIFEKIVSSVPVYLLRCRPDQEAVELVYQCIK
>NZ_CP007033.1|WP_025205863.1|1954122_1955211_-|Ig-domain-containing-protein
MILKKALAVLLTVSQILLTFSSASLAGLDDASNNTVFVYDDDFSGYATGSDGMPNWVTNGFSWVINDGYFKNDLVKKSFALLNSPTGAEVSFESEVMIKSSNGDKYKIAGIAVYTDHENYWHLALVEAPDKNTHYVELEEMINGKWCAESRGDTKLETGTLQPGGLHWDYNHPYRLKITLNELSITGAVYELDGSLIWKTKYLFKPDNCVKTGIPSLTTAAFEAQFDNVKVNITKTVADENPNTSLDDIKVTNIKISPEELFIKVGQTRKLEALIIPTNASNKTINWTSDNPQIASVNDGVVKGLSPGTVFIRVSTEDKSISDTCKVTVTSFSVYLFVGLYVLIVGIIALLIFRYIRTKEKI
>NZ_CP007033.1|WP_025205864.1|1955278_1956883_-|hypothetical-protein
MKILTKKIFYLLLFFLIFSTGFPAFGFSEQNSAKIIYDSQNDLLCSSVLKSEPDVSVKSEITIEIDIVALAYRDEEPILIRAYPELKIETDTTISGKKTGFFHTQKIGDKWWVIAPNGNGFIAVGTQRMTYKGIYSEALGYSPYEQNVKSIYGSEEEWAENTAERLNSWGFNLLGIDSAPSLRYRGLAHTVSFGFGSSFSKYGEDYVIYGLDASNHCFPNVFSPKFEYYCDDLARKVIQEDQNDPWLFGYYLDNELSWWGQSFDTTYGLTDLVIKKDKTHTAKIALINWLQNRYGNISSLNKAWGTDYPSFETLGKMTLFTGKNQLAINTDKTDFEKAIIEKYYTITTGAIKKYDKNHMILGSRNACGTEKCYDLVWGIGRNYTDISTFNYYGKVDLQAETAYDQIKVNGVYQNVELSEIFAQIYNKAKQPIMISEWSFPAYDSGLPCTVGAGMRVDTQTERAKAYEIYQKALFNMPFLVGSEFFMWVDPPAEGLTKSYKLDTNYGLVNEKDEPYALVTSVAKATNGNVYSLRN
>NZ_CP007033.1|WP_025205865.1|1956971_1958075_+|nucleotidyltransferase-family-protein
MKSVYNLLLHLLRVFINGEIPDKELLASVDGVELYNQARLQGVSSFLFETVYQHNDLLKIDHNVLTHWKEKTVVTAARQLMMLPTIETIFNLFETNGITAISLKGLVFKEQYARPELRSMNDLDVLINEKQMNQCIEAMTSLGYKPNELNYNDPDHMHIDMIKAGTFAVELHRTLWHPKYMQKIDNSDWVDHIWKDKRLQTVAGFQFYCLSPEDELINAVIHTARHLKHSNANLRLLSDFVLFFNSYRNQIDINYIEQTLKSMAILDFYYYLMDTCRLYLGLHLPDNYQLNSTKNSVIIIQNIMNKEEMIISSDRDQEKKINGYQYLLQKIKLVISNSSIYNKLLKIVHPLRSKARFLRKIGLHFRY
>NZ_CP007033.1|WP_025205866.1|1958071_1958824_-|CpsD/CapB-family-tyrosine-protein-kinase
MQIKTFNVYDNDNNAVRDAYEMLTAGLLINNNGRSKTFALLSCKPEEGKTSLAISLSISIARSGWRVLFVDADMRKPTAAKRLNAEAQLGLSDYLEGRGRLEEVISNTNIPNLTYLSCGTDCSNPIEKLCAVRFQKLFEQVKIEYDYIIFDTPALESVFDGAIVASKADATMLIVKAGFTSKKSLQRAKEQLHGINAKLIGIVLNKVKKRDYKRYYSSYNYFFNSNRFLKKAKKQFRSLNKGISKDTAKV
>NZ_CP007033.1|WP_025205867.1|1958841_1959513_-|LPS-biosynthesis-protein
MEIRRIIDSISRKWWLCVVSAVLFGGMGWFFHIFLSSPTYNADTTLYVLNRDRVTAGESLSYSDITMGKEFLKQYSGIFYSRSVAAEAARKLDQYSLSAGTISSMANLSINEDSGLLKIRVTAYDAIMAASIANVMGEVFSSKVKEITNSDFIGILDKAQVSNTPIPDNGIIKMILWIVAGEVFSLGIIYLLEYFDTTIRSVEDIENNIGVRVIGIIPEHDLQ
>NZ_CP007033.1|WP_025205868.1|1960994_1961972_-|SDR-family-NAD(P)-dependent-oxidoreductase
MILVTGGAGFIGSHLCERLLEEGKTVVAIDSFNDFYDPTIKERNIYEIRKSCNEKLIPKERFIVEKGDIRDQSFLMKVFQNYQFQSVIHLAAYAGVRPSIQNPELYVNVNINGTMNILECLREYRIKRFIFASSSSVYGNNEKVPFSEDDSVDQPISPYAATKKAGELLCYTYHHLYNLSVACLRFFTVYGPRQRPDLAIHKFTNLITSGKPVPFYGDGTTQRDYTYIDDIVDGILKALDWVNHKETRYGIFNLGESKTISLSEMVQELEKNLQKKAQLDSLPDQPGDVKNTYADIMKSKQLLGYQPTTMFSEGIKKFVSWYYRY
>NZ_CP007033.1|WP_025205869.1|1962000_1963458_-|lipopolysaccharide-biosynthesis-protein
MANLYKQVASASKWSTIAEISSRAITPVSLILLARVLTPEDYGVVSVATIVVSFTQMISDLGFQNALIQKDYDEKKLSKAASVGFLANMFVAIILYVLIFVLAGPLSLLFGIPESVMVIRIMAIQIILNSLNSIQTGLIQRALNFKILFYIRLTTTLIPALVSIPLAYTGISYWALVAGALFGSLANTVVVWIRSPWKPRLFWELKLFKEMIGFSLFNMAETFALWLAAWADQIVVGAVMTASALGLYRTSTNLVNVLVNLLLSAILPVLFSTLSRLQSDEAAFRSFFQNANKIICMIAFPLGIGFLFFGETVAAIVFGSKWNGAGDIIRIWGFVSAISLVYGVNGIGYRAKGKPQLNVIVICTNMCILLPAIIISAPYGLLTFVAVRSIVKLLQAPAHFYYGKKYLAISFVQTIQNLRWIFAASGLMAAGYVVYVWLIPYDTMMAQIVGALFCCVFYFIGLIPERTFIRKTINLFLGRNQSAES
>NZ_CP007033.1|WP_158407245.1|1963458_1964703_-|hypothetical-protein
MFIEQQSIETKKELLLNYLAIASVSLYLINLYAHLSLYSTTIAKLAKIMFFVGIVLYIVLRKGNWNYKLSGYHVWWGAFLLVSIVFTLRAGTLFSSSFWQLVADQKNIIASLLIFEAIRSKQNLYRVLGLTAIIAGVSAAVFLVNTYGWTLSGSLSYTWVNRMPETLGDNPNVLGGMYAIAFVFGAFLLYKRKNFLYCLFLIPILIYILFTGSKRALLFLLLSIASLFILDLKSSFVVKLLKAFIIAILILILYNALMDIPLFYTVVGYRFEGMINSLTGQGSIDASTFERQMFISEGWEQFLSAPFSGHGYYTFPYINTVAYGKYAHNNYIELLADMGVTGLVVYYALPIWLLKGLYSIYKKSDDESKNLSILLIILIMVTLITDISFVSYMFPVTYVLFAVTAAFIKLYEGA
>NZ_CP007033.1|WP_025205871.1|1964733_1965828_-|glycosyltransferase-family-4-protein
MKVAFVIGSLRFSGAERVLISIANEMTKKGNQIYILLLNGILTGREETYTDGLDPRIICIDAGLASNNSFSKIQRMLNIRKIINKVHPDVVVSFGVECNCILLPALFGCRFPVVVSERNDPKIYPFKKTLRIRRKILYCSAKGYVFQTEEAKAFFSTSIQSQAAVIPNPVAAENIPTPYSGERRKDIVSVGRLDDKQKNYKLLFRAFALLASDYPEYHLVIYGEGPDRPELEAEITKLNLTNRIFMPGAEADVPHRIRDAALFVLSSNFEGMPNALIEAMAVGMPVVSTNCPCGGPEFLINHGENGLLAPVDDIQELALAMRDILENPVAAEKMAHEARKILQQLAPEKITLMWEQYIEGFVER
>NZ_CP007033.1|WP_025205872.1|1966134_1967352_-|glycosyltransferase
MDILFVGGVFPSEMQDEILAKSRGTVQFAANALQWNVIFGLEEANDTHVDILNAPFVGSYPRLYKDIYFRSFELRHSSYSKDESIGFLNIFVIKHIWKAISLAKKVVRWANLKKQKKKAIIIYSMHSPLIFACAIGKVINKSIHLCLIAPDLPEFMMLNEKVNVILRLLKKADRLFMNIFLKYIDSFVLLTKYMAEPIRVGNKPWIVVEGMVNTKDLKTTESCNLIDKQKIILYTGTLFKAYGIMQLLDAFSLITNPSYSLWICGEGEAKEDILHLAALDKRIKFFGQVSRDEALKLQREATVLINPRGGEEAYTKYSFPSKIMEYLLSGTPTIMNMLPGIPEEYVDYIFFIENETAKGMAEKIVEVCSMPKEKLLEFGIRARNFVMANKNNIIQGKRIYDLINQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

999850 : 1010538

Prochlorococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019226394.1\|999850_1000549_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.0e-17	30.1
WP_019226395.1\|1000541_1001327_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_019226396.1\|1001631_1002699_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_019226397.1\|1002993_1003488_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-24	43.5
WP_019226398.1\|1003515_1004814_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.7e-19	28.8
WP_019226399.1\|1004951_1005671_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	6.3e-39	36.4
WP_019226400.1\|1005756_1007157_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.8e-61	36.1
WP_019226401.1\|1007180_1008197_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	7.0e-68	44.6
WP_019226402.1\|1008193_1008802_+	phosphoribosylglycinamide formyltransferase	Q58MV3	Prochlorococcus_phage	1.0e-21	35.5
WP_025205360.1\|1008996_1010538_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.8e-76	50.0

DBSCAN-SWA_2

1397212 : 1405330

Staphylococcus_phage(50.0%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015042621.1\|1397212_1398157_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	8.6e-28	28.5
WP_015042622.1\|1398321_1399311_+	J domain-containing protein	A0A1V0SF83	Hokovirus	4.2e-17	27.0
WP_015042623.1\|1399527_1402113_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.1e-128	38.1
WP_015042625.1\|1402292_1402502_+	hypothetical protein	NA	NA	NA	NA
WP_015042626.1\|1402521_1402719_+\|coat	spore coat protein	NA	NA	NA	NA
WP_015042627.1\|1402825_1403290_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.2e-40	55.7
WP_015042628.1\|1403417_1404635_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.5e-109	51.5
WP_025205606.1\|1404676_1405330_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.6e-39	41.7

DBSCAN-SWA_3

2115582 : 2154121

Acidithiobacillus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025205982.1\|2115582_2115777_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_144284049.1\|2116175_2117036_-	hypothetical protein	NA	NA	NA	NA
WP_025205984.1\|2117090_2118635_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025205985.1\|2118713_2119613_-	hypothetical protein	NA	NA	NA	NA
WP_025205986.1\|2119775_2120399_-	hypothetical protein	NA	NA	NA	NA
WP_025205987.1\|2120548_2121694_-	hypothetical protein	NA	NA	NA	NA
WP_025205988.1\|2121672_2122356_-	hypothetical protein	NA	NA	NA	NA
WP_025205989.1\|2122352_2122913_-	hypothetical protein	NA	NA	NA	NA
WP_025205990.1\|2123077_2124016_-	hypothetical protein	NA	NA	NA	NA
WP_025205991.1\|2124056_2126243_-	radical SAM/SPASM domain-containing protein	NA	NA	NA	NA
WP_144284050.1\|2126242_2127547_-	hypothetical protein	NA	NA	NA	NA
WP_025205993.1\|2127563_2127998_-	hypothetical protein	NA	NA	NA	NA
WP_025205994.1\|2128035_2128266_-	hypothetical protein	NA	NA	NA	NA
WP_025205995.1\|2128348_2128702_-	hypothetical protein	NA	NA	NA	NA
WP_025205996.1\|2128861_2130622_-	protein kinase	A0A0U2U263	Niemeyer_virus	2.0e-17	33.5
WP_025205997.1\|2130614_2131073_-	hypothetical protein	NA	NA	NA	NA
WP_025205998.1\|2131484_2132228_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BUR2	Microcystis_phage	3.6e-29	38.2
WP_158407249.1\|2132525_2132669_+	hypothetical protein	NA	NA	NA	NA
WP_025205999.1\|2132723_2134271_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-94	38.0
WP_019226930.1\|2134317_2135727_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_084544193.1\|2135827_2135974_+	hypothetical protein	NA	NA	NA	NA
WP_025206000.1\|2136040_2137582_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.3e-61	33.5
WP_025206001.1\|2137676_2138033_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.2e-17	37.2
WP_025206002.1\|2138026_2138383_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_144284051.1\|2138516_2139131_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-34	39.8
WP_144284052.1\|2139545_2139836_+	hypothetical protein	NA	NA	NA	NA
WP_025206005.1\|2142331_2143399_-	AAA family ATPase	NA	NA	NA	NA
WP_025206007.1\|2144119_2145367_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	1.4e-78	41.1
WP_025206008.1\|2145739_2146135_-	hypothetical protein	NA	NA	NA	NA
WP_025206009.1\|2146436_2147321_-	hypothetical protein	NA	NA	NA	NA
WP_025206010.1\|2147556_2148018_-	hypothetical protein	A0A1P8CWV0	Bacillus_phage	5.9e-22	39.9
WP_025206011.1\|2148034_2148472_-	restriction endonuclease	A0A1P8CWV0	Bacillus_phage	7.5e-43	55.5
WP_158407250.1\|2148507_2149260_-	hypothetical protein	NA	NA	NA	NA
WP_025206013.1\|2149371_2150886_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_025206014.1\|2150878_2151619_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.4e-41	40.9
WP_019226936.1\|2153131_2154121_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	2.3e-87	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage