CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP003994	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13b, complete sequence	0 crisprs	NA	0
NZ_CP004000	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13f, complete sequence	0 crisprs	RT,c2c9_V-U4	5
NZ_CP003995	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13c, complete sequence	0 crisprs	NA	0
NZ_CP003996	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13a, complete sequence	0 crisprs	NA	0
NZ_CP003997	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence	0 crisprs	NA	0
NZ_CP003998	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13e, complete sequence	0 crisprs	DEDDh	0
NZ_CP003999	Klebsiella pneumoniae subsp. pneumoniae Kp13 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,RT,WYL	7

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13384 : 60549

Salmonella_phage(50.0%)

transposase,integrase

attL 29390:29449|attR 60547:61604

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072199635.1\|13384_14353_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.1e-182	98.1
WP_025368587.1\|14354_14687_-	hypothetical protein	NA	NA	NA	NA
WP_004196361.1\|14676_15714_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_004196331.1\|16079_16622_-	hypothetical protein	NA	NA	NA	NA
WP_025368588.1\|16638_17163_-	hypothetical protein	NA	NA	NA	NA
WP_071528223.1\|17355_17769_-	hypothetical protein	NA	NA	NA	NA
WP_004026319.1\|18708_19173_+	hypothetical protein	NA	NA	NA	NA
WP_004196318.1\|19172_19961_+	hypothetical protein	NA	NA	NA	NA
WP_162471626.1\|22011_22980_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	7.9e-186	99.4
WP_025368590.1\|22981_23704_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	4.8e-10	48.0
WP_004196347.1\|23706_24843_-	S49 family peptidase	G0YPK2	Erwinia_phage	5.7e-10	29.0
WP_004196348.1\|24851_25526_-	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_004196339.1\|25538_26636_-	hypothetical protein	NA	NA	NA	NA
WP_077253889.1\|28118_29087_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	5.3e-182	97.8
29390:29449	attL	NA	NA	NA	NA
WP_072199635.1\|29446_30415_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.1e-182	98.1
WP_040120488.1\|31103_33176_+	VWA domain-containing protein	NA	NA	NA	NA
WP_004181768.1\|33247_33478_+	hypothetical protein	NA	NA	NA	NA
WP_004197572.1\|33588_34833_+	toprim domain protein	A0A0H5AWB1	Pseudomonas_phage	8.2e-10	25.8
WP_004181766.1\|34901_35441_+	hypothetical protein	NA	NA	NA	NA
WP_004181765.1\|35585_35804_+	hypothetical protein	NA	NA	NA	NA
WP_004197575.1\|36391_36634_+	hypothetical protein	NA	NA	NA	NA
WP_004181762.1\|36681_37146_+	hypothetical protein	NA	NA	NA	NA
WP_004197581.1\|37155_37563_+	hypothetical protein	NA	NA	NA	NA
WP_004197577.1\|37605_38565_+	DNA replication terminus site-binding family protein	NA	NA	NA	NA
WP_004181760.1\|38561_39320_+	hypothetical protein	NA	NA	NA	NA
WP_004197568.1\|39316_39640_+	hypothetical protein	NA	NA	NA	NA
WP_004197578.1\|39791_40109_+	hypothetical protein	NA	NA	NA	NA
WP_004197571.1\|40174_41311_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004178082.1\|41396_42884_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004197576.1\|43396_43651_+	hemolysin expression modulating protein	NA	NA	NA	NA
WP_004197570.1\|43736_44804_+	hypothetical protein	NA	NA	NA	NA
WP_004186900.1\|46119_47004_-	hypothetical protein	J9Q7H0	Salmonella_phage	2.6e-50	43.2
WP_017900807.1\|48263_48716_+	hypothetical protein	NA	NA	NA	NA
WP_124036893.1\|48769_48955_-	hypothetical protein	NA	NA	NA	NA
WP_025368596.1\|49762_50068_-	chorismate mutase	NA	NA	NA	NA
WP_032451271.1\|50249_50807_+	DUF2913 family protein	NA	NA	NA	NA
WP_114267959.1\|51123_51441_+	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_000427623.1\|51622_52627_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000429836.1\|52705_53140_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|53211_53562_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732292.1\|53575_53851_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|53886_54309_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|54360_56055_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|56072_56435_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|56431_56668_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001300294.1\|56703_57372_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000935452.1\|57410_58715_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001067855.1\|58761_59466_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_072199635.1\|59580_60549_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.1e-182	98.1
60547:61604	attR	NA	NA	NA	NA

DBSCAN-SWA_2

67814 : 137196

Escherichia_phage(25.0%)

transposase,integrase

attL 58699:58758|attR 136429:137249

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
58699:58758	attL	NA	NA	NA	NA
WP_025368602.1\|67814_69041_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	1.7e-156	79.3
WP_040120489.1\|69326_69752_-\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	1.8e-33	51.5
WP_025368604.1\|69788_71015_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	6.2e-143	76.6
WP_025368606.1\|72712_73561_+	hypothetical protein	NA	NA	NA	NA
WP_040120490.1\|73609_76795_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_004026524.1\|76804_77842_-	traU family protein	NA	NA	NA	NA
WP_004026523.1\|77838_79200_-	type-F conjugative transfer system pilin assembly family protein	NA	NA	NA	NA
WP_025368608.1\|79186_79711_-	signal peptidase I	NA	NA	NA	NA
WP_004181790.1\|79847_84089_-	hypothetical protein	NA	NA	NA	NA
WP_004181791.1\|84216_84753_-	hypothetical protein	NA	NA	NA	NA
WP_040120491.1\|84740_85172_-	hypothetical protein	NA	NA	NA	NA
WP_025368212.1\|85229_86210_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_004196672.1\|86319_86778_-	hypothetical protein	NA	NA	NA	NA
WP_004196655.1\|87462_88266_+	hypothetical protein	NA	NA	NA	NA
WP_004196650.1\|88255_88972_+	hypothetical protein	NA	NA	NA	NA
WP_004196661.1\|88958_89459_+	hypothetical protein	NA	NA	NA	NA
WP_014386510.1\|89430_89847_+	hypothetical protein	NA	NA	NA	NA
WP_025368609.1\|89873_92591_-	TraC family protein	NA	NA	NA	NA
WP_004181797.1\|92635_93373_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_025368610.1\|93382_94234_-	disulfide isomerase	NA	NA	NA	NA
WP_004181799.1\|94236_94701_-	hypothetical protein	NA	NA	NA	NA
WP_004196651.1\|94703_96074_-	conjugal transfer protein TrbI	NA	NA	NA	NA
WP_014386508.1\|96033_96552_-	hypothetical protein	NA	NA	NA	NA
WP_004026506.1\|96548_97718_-	traK family protein	NA	NA	NA	NA
WP_004196647.1\|97719_98580_-	traE family protein	NA	NA	NA	NA
WP_024198097.1\|98598_98901_-	plasmid transfer protein	NA	NA	NA	NA
WP_004026504.1\|99002_99371_-	hypothetical protein	NA	NA	NA	NA
WP_004196674.1\|100645_101314_+	hypothetical protein	NA	NA	NA	NA
WP_004196640.1\|101369_102134_+	hypothetical protein	NA	NA	NA	NA
WP_004196657.1\|102261_103440_+	hypothetical protein	A0A1P8DTT7	Salmonella_phage	9.1e-19	33.0
WP_071528227.1\|103804_104326_+	hypothetical protein	NA	NA	NA	NA
WP_070083073.1\|104486_106925_+	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_153908803.1\|106896_107052_-	hypothetical protein	NA	NA	NA	NA
WP_004181813.1\|109870_111118_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.4e-12	23.0
WP_004181814.1\|111117_112128_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_087859145.1\|112789_113897_+\|transposase	IS3-like element ISKpn20 family transposase	S5WIU1	Leptospira_phage	1.1e-42	37.2
WP_025368614.1\|114049_116455_-	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_025368615.1\|116593_118999_-	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_025368616.1\|119134_121540_-	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_025368617.1\|121686_122364_-	NYN domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|122762_123467_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_077253891.1\|123412_123844_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|123812_124826_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001830196.1\|124982_125456_+	trimethoprim-resistant dihydrofolate reductase DfrA15	G3MBI7	Bacillus_virus	1.2e-17	30.2
WP_025368619.1\|125754_127014_+	chloramphenicol efflux MFS transporter CmlA4	S4TR35	Salmonella_phage	1.1e-25	31.3
WP_001261740.1\|127106_127898_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|128021_128369_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|128362_129202_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|129606_131148_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_025368620.1\|131646_132522_+	class A extended-spectrum beta-lactamase CTX-M-2	A0A1B0VBP7	Salmonella_phage	1.0e-123	81.5
WP_000679427.1\|133605_133953_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|133946_134786_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|134913_135414_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001163403.1\|135589_136372_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-33	35.0
WP_001067855.1\|136491_137196_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
136429:137249	attR	NA	NA	NA	NA

DBSCAN-SWA_3

142029 : 151467

Escherichia_phage(41.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004026394.1\|142029_142638_-	hypothetical protein	K4JV11	Caulobacter_phage	1.5e-25	42.2
WP_004026395.1\|142707_143157_-	hypothetical protein	A0A1I9KFG8	Aeromonas_phage	2.9e-18	45.2
WP_162140056.1\|143701_143869_-	hypothetical protein	NA	NA	NA	NA
WP_025368622.1\|143925_144198_-	hypothetical protein	I7B2L9	Escherichia_phage	5.5e-12	47.8
WP_016947069.1\|144467_144653_-	hypothetical protein	NA	NA	NA	NA
WP_025368623.1\|144652_145342_-	DUF551 domain-containing protein	A0A2I6PID9	Escherichia_phage	2.4e-19	63.4
WP_025368624.1\|145338_145821_-	hypothetical protein	A0A077SLK5	Escherichia_phage	4.4e-12	58.3
WP_153236429.1\|146157_146493_-	hypothetical protein	J9Q804	Salmonella_phage	3.3e-14	51.4
WP_004197228.1\|147071_147458_-	hypothetical protein	H6WRY2	Salmonella_phage	3.7e-17	85.1
WP_004883219.1\|147874_148519_-	hypothetical protein	A0A0U4JEF1	Pseudomonas_phage	1.4e-05	39.8
WP_062826758.1\|149220_149409_-	hypothetical protein	NA	NA	NA	NA
WP_025368625.1\|149405_149903_-	hypothetical protein	A0A076G835	Escherichia_phage	1.5e-23	57.0
WP_004026415.1\|149996_150215_-	hypothetical protein	R9TRD3	Aeromonas_phage	4.4e-20	66.7
WP_004197205.1\|150380_150632_-	hypothetical protein	S5MQM0	Escherichia_phage	1.9e-22	76.7
WP_004026416.1\|150751_151066_-	hypothetical protein	NA	NA	NA	NA
WP_004026417.1\|151146_151467_-	hypothetical protein	J9Q750	Salmonella_phage	2.2e-28	50.9

DBSCAN-SWA_4

175110 : 201561

Escherichia_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025368640.1\|175110_176313_+	restriction endonuclease	E5E3X4	Burkholderia_phage	2.1e-34	40.7
WP_025368641.1\|176402_177818_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	6.9e-106	50.9
WP_004026464.1\|177944_178688_-	DNA replication protein DnaC	V5UQI5	Shigella_phage	1.8e-60	49.6
WP_025368642.1\|178684_179119_-	hypothetical protein	NA	NA	NA	NA
WP_004026466.1\|179151_179412_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	5.9e-11	41.0
WP_004026468.1\|179665_180109_-	hypothetical protein	NA	NA	NA	NA
WP_025368643.1\|180339_180699_+	hypothetical protein	NA	NA	NA	NA
WP_040120493.1\|180883_181294_-	hypothetical protein	Q71TH9	Escherichia_phage	4.6e-42	60.8
WP_004181824.1\|181418_181733_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|181839_182544_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004181892.1\|182618_182972_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	7.1e-44	80.2
WP_004178082.1\|183662_185150_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004181893.1\|185235_185658_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.3e-31	49.3
WP_025368644.1\|185657_186929_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.5e-139	58.1
WP_004181895.1\|187029_187473_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_004181896.1\|187469_187940_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_004026352.1\|188049_188310_-	hypothetical protein	NA	NA	NA	NA
WP_004883380.1\|188881_190063_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_004181898.1\|190134_190293_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001067855.1\|190821_191526_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000954592.1\|191664_191841_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|192170_192986_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000251875.1\|193072_193375_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001445143.1\|193268_193520_-	hypothetical protein	NA	NA	NA	NA
WP_025368645.1\|193744_193993_+	hypothetical protein	NA	NA	NA	NA
WP_025368646.1\|194320_195262_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_025368647.1\|195261_196350_+\|tRNA	tRNA-guanine transglycosylase	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.3e-47	33.8
WP_025368648.1\|196342_197137_+	RmtG family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_025368649.1\|197090_197387_+	hypothetical protein	M1PLC5	Streptococcus_phage	5.6e-10	48.5
WP_071886229.1\|197316_197532_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|197562_199056_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|199266_199491_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|199487_200225_-	recombinase family protein	NA	NA	NA	NA
WP_001044210.1\|200710_200851_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|200856_201561_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_5

207491 : 258552

Enterobacteria_phage(20.0%)

transposase,integrase,protease

attL 205118:205132|attR 211514:211528

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
205118:205132	attL	NA	NA	NA	NA
WP_004187383.1\|207491_208232_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
WP_020316874.1\|208250_208454_-	hypothetical protein	NA	NA	NA	NA
WP_004187390.1\|208495_208981_-	hypothetical protein	NA	NA	NA	NA
WP_004206901.1\|208977_209565_-	restriction endonuclease	NA	NA	NA	NA
WP_004187394.1\|209557_209806_-	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
WP_015586036.1\|209802_210264_-	hypothetical protein	NA	NA	NA	NA
WP_004206899.1\|210404_210950_+	hypothetical protein	NA	NA	NA	NA
WP_004206898.1\|211102_211510_-	hypothetical protein	NA	NA	NA	NA
WP_015062853.1\|211511_212090_-	hypothetical protein	NA	NA	NA	NA
211514:211528	attR	NA	NA	NA	NA
WP_004206896.1\|212067_212424_-	hypothetical protein	NA	NA	NA	NA
WP_004206895.1\|212951_214226_+	hypothetical protein	NA	NA	NA	NA
WP_004206894.1\|214243_214501_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004206893.1\|214501_215185_+	hypothetical protein	NA	NA	NA	NA
WP_004187411.1\|215229_215448_+	hypothetical protein	NA	NA	NA	NA
WP_004187413.1\|215450_215660_+	hypothetical protein	NA	NA	NA	NA
WP_024190314.1\|215782_217048_-	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.3e-111	50.4
WP_025368652.1\|217035_217470_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.0e-29	54.5
WP_020277900.1\|217562_217928_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_004187429.1\|217896_218154_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_073546084.1\|218245_218578_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000027057.1\|218893_219754_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000722315.1\|220453_221278_-	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_001206315.1\|221337_222126_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_014454105.1\|222195_222750_-	aminoglycoside N-acetyltransferase AAC(6')-Ib'	NA	NA	NA	NA
WP_001217881.1\|222983_223541_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_021529705.1\|223704_226710_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.9
WP_002210513.1\|228310_229072_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|229092_229953_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_001067855.1\|230089_230794_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_022646501.1\|232172_232502_+	hypothetical protein	NA	NA	NA	NA
WP_001217270.1\|233023_234853_+	hypothetical protein	NA	NA	NA	NA
WP_000215804.1\|235022_237710_-	hypothetical protein	NA	NA	NA	NA
WP_001270901.1\|237861_238692_-	hypothetical protein	NA	NA	NA	NA
WP_085954987.1\|238807_238996_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000139428.1\|240076_240790_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000699996.1\|240838_241105_+	transcriptional regulator	NA	NA	NA	NA
WP_000103071.1\|241406_243383_-	excinuclease ABC subunit UvrB	A7WKH8	Acidianus_filamentous_virus	7.1e-08	39.0
WP_001120775.1\|243669_243945_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000842119.1\|244003_245113_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.8e-32	30.3
WP_000070400.1\|245163_245562_+	VOC family protein	NA	NA	NA	NA
WP_000664785.1\|245719_247054_+	DUF3422 family protein	NA	NA	NA	NA
WP_000440264.1\|247101_247932_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000233327.1\|247949_249260_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000038427.1\|249463_252115_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-156	33.8
WP_072199635.1\|252517_253486_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.1e-182	98.1
WP_007372364.1\|253771_254062_-	hypothetical protein	NA	NA	NA	NA
WP_070180862.1\|254058_254595_-	hypothetical protein	NA	NA	NA	NA
WP_072200942.1\|257583_258552_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-182	98.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP003999

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003999_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003999_1

4248469-4248608

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003999_1

>merge|NZ_CP003999|1|4248469-4248608|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP003999|1|1|4248469-4248608|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003999.1\|WP_004147186.1\|4252110_4253349_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP003999.1\|WP_023287268.1\|4244382_4245840_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP003999.1\|WP_002889793.1\|4241860_4242259_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP003999.1\|WP_002889696.1\|4255818_4256586_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP003999.1\|WP_004178678.1\|4248635_4248851_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP003999.1\|WP_023287272.1\|4238203_4239487_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP003999.1\|WP_004213891.1\|4241082_4241775_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP003999.1\|WP_002889726.1\|4246337_4247393_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP003999.1\|WP_002889699.1\|4255107_4255848_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP003999.1\|WP_004177335.1\|4250089_4250686_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP003999.1\|WP_002889733.1\|4243666_4244125_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP003999.1\|WP_002889716.1\|4250692_4251331_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP003999.1\|WP_002889720.1\|4248853_4250077_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP003999.1\|WP_002889724.1\|4247552_4248413_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP003999.1\|WP_004177336.1\|4251323_4252118_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP003999.1\|WP_004145825.1\|4256660_4257242_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP003999.1\|WP_002889742.1\|4242316_4243561_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP003999.1\|WP_002889795.1\|4239636_4241037_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP003999.1\|WP_016530033.1\|4245882_4246335_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP003999.1\|WP_002889702.1\|4253352_4254696_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426

Protein	Function_ID	Function_description	E-value
NZ_CP003999.1\|WP_004147186.1\|4252110_4253349_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP003999.1\|WP_023287268.1\|4244382_4245840_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP003999.1\|WP_002889793.1\|4241860_4242259_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
NZ_CP003999.1\|WP_002889696.1\|4255818_4256586_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP003999.1\|WP_004178678.1\|4248635_4248851_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
NZ_CP003999.1\|WP_023287272.1\|4238203_4239487_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP003999.1\|WP_004213891.1\|4241082_4241775_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	2.66819e-151
NZ_CP003999.1\|WP_002889726.1\|4246337_4247393_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP003999.1\|WP_002889699.1\|4255107_4255848_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP003999.1\|WP_004177335.1\|4250089_4250686_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP003999.1\|WP_002889733.1\|4243666_4244125_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP003999.1\|WP_002889716.1\|4250692_4251331_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP003999.1\|WP_002889720.1\|4248853_4250077_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP003999.1\|WP_002889724.1\|4247552_4248413_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	7.97848e-129
NZ_CP003999.1\|WP_004177336.1\|4251323_4252118_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP003999.1\|WP_004145825.1\|4256660_4257242_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP003999.1\|WP_002889742.1\|4242316_4243561_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP003999.1\|WP_002889795.1\|4239636_4241037_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP003999.1\|WP_016530033.1\|4245882_4246335_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	9.00839e-84
NZ_CP003999.1\|WP_002889702.1\|4253352_4254696_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0

>NZ_CP003999.1|WP_002889724.1|4247552_4248413_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_CP003999.1|WP_002889726.1|4246337_4247393_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP003999.1|WP_016530033.1|4245882_4246335_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAMVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAAHGEWFINYRMEKRVALW
>NZ_CP003999.1|WP_023287268.1|4244382_4245840_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEANEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP003999.1|WP_002889733.1|4243666_4244125_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP003999.1|WP_002889742.1|4242316_4243561_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP003999.1|WP_002889793.1|4241860_4242259_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP003999.1|WP_004213891.1|4241082_4241775_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP003999.1|WP_002889795.1|4239636_4241037_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP003999.1|WP_023287272.1|4238203_4239487_+|4-aminobutyrate--2-oxoglutarate-transaminase
MKSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQIVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAAMAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP003999.1|WP_004178678.1|4248635_4248851_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP003999.1|WP_002889720.1|4248853_4250077_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP003999.1|WP_004177335.1|4250089_4250686_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP003999.1|WP_002889716.1|4250692_4251331_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP003999.1|WP_004177336.1|4251323_4252118_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP003999.1|WP_004147186.1|4252110_4253349_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP003999.1|WP_002889702.1|4253352_4254696_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP003999.1|WP_002889699.1|4255107_4255848_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP003999.1|WP_002889696.1|4255818_4256586_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP003999.1|WP_004145825.1|4256660_4257242_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Crispr_ID: NZ_CP003999_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003999_2

4465431-4465525

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP003999_2

>merge|NZ_CP003999|2|4465431-4465525|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP003999|2|2|4465431-4465525|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003999.1\|WP_023279864.1\|4452829_4454539_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP003999.1\|WP_004219851.1\|4452477_4452648_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003999.1\|WP_002888353.1\|4456189_4456885_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP003999.1\|WP_025368450.1\|4465666_4467292_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP003999.1\|WP_002888321.1\|4474970_4475819_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP003999.1\|WP_025368448.1\|4462524_4463184_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP003999.1\|WP_002888329.1\|4471486_4472773_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP003999.1\|WP_025368447.1\|4459605_4462512_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP003999.1\|WP_002888324.1\|4473764_4474586_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP003999.1\|WP_002888327.1\|4472778_4473768_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP003999.1\|WP_004177424.1\|4454549_4456052_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP003999.1\|WP_023279867.1\|4467281_4467980_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP003999.1\|WP_002888323.1\|4474588_4474966_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP003999.1\|WP_004178576.1\|4457060_4459418_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP003999.1\|WP_002888332.1\|4468012_4468840_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP003999.1\|WP_004145972.1\|4451646_4452492_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP003999.1\|WP_002888320.1\|4476242_4476722_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP003999.1\|WP_025368451.1\|4469083_4471432_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP003999.1\|WP_004177428.1\|4463258_4463798_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP003999.1\|WP_002888345.1\|4463977_4465342_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030

Protein	Function_ID	Function_description	E-value
NZ_CP003999.1\|WP_023279864.1\|4452829_4454539_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP003999.1\|WP_002888324.1\|4473764_4474586_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP003999.1\|WP_002888353.1\|4456189_4456885_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP003999.1\|WP_025368450.1\|4465666_4467292_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	1.07385e-172
NZ_CP003999.1\|WP_002888321.1\|4474970_4475819_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP003999.1\|WP_025368448.1\|4462524_4463184_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	3.01277e-159
NZ_CP003999.1\|WP_002888329.1\|4471486_4472773_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP003999.1\|WP_025368447.1\|4459605_4462512_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP003999.1\|WP_002888327.1\|4472778_4473768_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP003999.1\|WP_004177424.1\|4454549_4456052_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP003999.1\|WP_023279867.1\|4467281_4467980_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	8.0242e-66
NZ_CP003999.1\|WP_002888323.1\|4474588_4474966_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP003999.1\|WP_004178576.1\|4457060_4459418_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP003999.1\|WP_002888332.1\|4468012_4468840_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP003999.1\|WP_004145972.1\|4451646_4452492_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP003999.1\|WP_002888320.1\|4476242_4476722_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP003999.1\|WP_025368451.1\|4469083_4471432_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP003999.1\|WP_004177428.1\|4463258_4463798_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	6.27126e-86
NZ_CP003999.1\|WP_002888345.1\|4463977_4465342_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169

>NZ_CP003999.1|WP_002888345.1|4463977_4465342_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP003999.1|WP_004177428.1|4463258_4463798_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIEALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP003999.1|WP_025368448.1|4462524_4463184_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEVLAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP003999.1|WP_025368447.1|4459605_4462512_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP003999.1|WP_004178576.1|4457060_4459418_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP003999.1|WP_002888353.1|4456189_4456885_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP003999.1|WP_004177424.1|4454549_4456052_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP003999.1|WP_023279864.1|4452829_4454539_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP003999.1|WP_004219851.1|4452477_4452648_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP003999.1|WP_004145972.1|4451646_4452492_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP003999.1|WP_025368450.1|4465666_4467292_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEIHDAS
>NZ_CP003999.1|WP_023279867.1|4467281_4467980_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAVGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP003999.1|WP_002888332.1|4468012_4468840_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP003999.1|WP_025368451.1|4469083_4471432_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSPQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP003999.1|WP_002888329.1|4471486_4472773_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP003999.1|WP_002888327.1|4472778_4473768_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP003999.1|WP_002888324.1|4473764_4474586_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP003999.1|WP_002888323.1|4474588_4474966_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP003999.1|WP_002888321.1|4474970_4475819_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP003999.1|WP_002888320.1|4476242_4476722_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1283330 : 1337527

Salmonella_phage(39.53%)

integrase,holin,capsid,tRNA,terminase,tail

attL 1286623:1286638|attR 1306230:1306245

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004149335.1\|1283330_1284605_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_002913890.1\|1284639_1285260_+	YfgM family protein	NA	NA	NA	NA
WP_002913889.1\|1285270_1286449_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_004144309.1\|1286562_1288041_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
1286623:1286638	attL	NA	NA	NA	NA
WP_025367974.1\|1288158_1289238_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_004144303.1\|1289287_1289506_+	hypothetical protein	NA	NA	NA	NA
WP_004149333.1\|1289489_1290881_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	6.3e-35	33.0
WP_004151980.1\|1291039_1292506_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1292573_1294151_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_025367975.1\|1294342_1295593_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	2.3e-206	85.1
WP_004243823.1\|1295609_1295801_-	hypothetical protein	NA	NA	NA	NA
WP_025367976.1\|1295797_1296391_-	adenine methylase	T1SA14	Salmonella_phage	1.8e-108	91.4
WP_025269983.1\|1296387_1296579_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	6.0e-13	62.7
WP_025367977.1\|1296575_1297340_-	hypothetical protein	Q5QF30	Pseudomonas_virus	1.8e-36	41.7
WP_009485474.1\|1297336_1297495_-	DUF1317 family protein	T1SAR0	Salmonella_phage	8.7e-18	80.8
WP_004197333.1\|1297487_1297781_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	2.3e-32	71.1
WP_004144294.1\|1297890_1298139_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_025367979.1\|1298187_1299123_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	5.7e-141	76.4
WP_025367980.1\|1299119_1299941_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.0e-134	82.1
WP_025367981.1\|1299937_1300237_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.4e-19	53.5
WP_004197420.1\|1300604_1301186_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	4.6e-64	64.3
WP_025367982.1\|1301340_1301574_+	hypothetical protein	T1SAR5	Salmonella_phage	5.4e-24	67.5
WP_025367984.1\|1301920_1303087_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	5.1e-147	68.4
WP_025367985.1\|1303076_1303841_+	DNA replication domain protein	G9L6A8	Escherichia_phage	1.7e-58	90.6
WP_023285444.1\|1303966_1304311_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	2.2e-53	86.0
WP_040120456.1\|1304503_1305025_+	hypothetical protein	Q5G8U6	Enterobacteria_phage	1.5e-26	68.9
WP_025367988.1\|1305302_1305707_+	hypothetical protein	NA	NA	NA	NA
WP_025367989.1\|1305703_1306093_+	hypothetical protein	NA	NA	NA	NA
WP_025367990.1\|1306262_1306916_+	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	5.6e-26	84.1
1306230:1306245	attR	NA	NA	NA	NA
WP_025367991.1\|1306915_1307104_+	hypothetical protein	R9TNE4	Aeromonas_phage	3.8e-20	78.3
WP_025367992.1\|1307096_1307435_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_025367993.1\|1307509_1307767_+	hypothetical protein	NA	NA	NA	NA
WP_023285441.1\|1307844_1308435_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.7e-77	77.9
WP_025367994.1\|1308431_1309907_+	hypothetical protein	Q858H3	Salmonella_phage	1.2e-278	92.4
WP_133242308.1\|1309909_1310695_-	hypothetical protein	NA	NA	NA	NA
WP_004152472.1\|1311447_1311651_+	hypothetical protein	NA	NA	NA	NA
WP_025367995.1\|1311654_1313334_+\|tail	tail protein	T1S9Z7	Salmonella_phage	1.7e-191	58.7
WP_025367996.1\|1313330_1313636_+	hypothetical protein	Q2A090	Sodalis_phage	1.4e-16	51.3
WP_040120462.1\|1313917_1314316_+	peptidase	T1SAP9	Salmonella_phage	1.6e-36	59.5
WP_025367998.1\|1314328_1315336_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	8.5e-183	93.4
WP_004152466.1\|1315345_1315738_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_025367999.1\|1315730_1316009_+	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_025368000.1\|1316057_1316669_+	hypothetical protein	T1SAQ2	Salmonella_phage	6.3e-48	49.0
WP_025368001.1\|1316668_1319146_+	hypothetical protein	G9L6D0	Escherichia_phage	3.6e-267	56.7
WP_025368002.1\|1319147_1319618_+	hypothetical protein	Q858G2	Salmonella_phage	2.8e-43	53.9
WP_024622833.1\|1319610_1320108_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.2e-24	41.7
WP_025368003.1\|1320120_1322865_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	5.7e-96	39.7
WP_025368004.1\|1322864_1326254_+	hypothetical protein	G9L6D4	Escherichia_phage	1.6e-119	41.4
WP_025368005.1\|1326263_1326878_+	hypothetical protein	NA	NA	NA	NA
WP_071886199.1\|1327148_1327661_-	hypothetical protein	NA	NA	NA	NA
WP_025368006.1\|1327647_1328010_-	hypothetical protein	NA	NA	NA	NA
WP_040120412.1\|1328184_1328877_-	hypothetical protein	G9L6E2	Escherichia_phage	1.4e-59	50.0
WP_158423260.1\|1328902_1329130_-	hypothetical protein	NA	NA	NA	NA
WP_114071238.1\|1329356_1330208_+	hypothetical protein	NA	NA	NA	NA
WP_025368008.1\|1330429_1330726_-	hypothetical protein	T1SA06	Salmonella_phage	8.1e-25	64.3
WP_025368009.1\|1330877_1333442_+\|tail	phage tail fiber protein	A0A2H5BN49	Klebsiella_phage	4.4e-276	74.0
WP_025368010.1\|1333727_1334132_+	membrane protein	A0A0F6R7N0	Escherichia_coli_O157_typing_phage	2.3e-54	82.6
WP_025368011.1\|1334118_1334415_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	1.3e-35	80.6
WP_025368012.1\|1334411_1334891_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	7.1e-63	70.1
WP_040120413.1\|1334887_1335472_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	4.1e-12	35.7
WP_025368014.1\|1335658_1337527_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_2

1703086 : 1709993

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1703086_1703950_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_002912638.1\|1703960_1704734_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004151134.1\|1704976_1705873_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912635.1\|1706115_1707477_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_004175198.1\|1707795_1708518_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004151135.1\|1708514_1709993_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3

DBSCAN-SWA_3

1746560 : 1754185

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152488.1\|1746560_1747967_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004152487.1\|1748191_1749256_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004152486.1\|1749282_1750152_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	67.0
WP_004152485.1\|1750183_1751074_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	33.6
WP_004152484.1\|1751088_1751643_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	58.2
WP_004152483.1\|1751823_1752990_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004152482.1\|1753183_1754185_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	28.6

DBSCAN-SWA_4

2030366 : 2086900

Microcystis_virus(30.0%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|2030366_2031113_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_025368108.1\|2031551_2032538_+	fatty acid desaturase	NA	NA	NA	NA
WP_004151439.1\|2032530_2033331_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_002910767.1\|2033317_2033491_-	hypothetical protein	NA	NA	NA	NA
WP_004219597.1\|2033788_2033932_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|2034108_2035050_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|2035143_2036133_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004145486.1\|2036158_2037490_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910759.1\|2037517_2038726_+	propionate kinase	NA	NA	NA	NA
WP_004152312.1\|2038754_2041049_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.3e-159	41.8
WP_004225356.1\|2041100_2041247_-	hypothetical protein	NA	NA	NA	NA
WP_002910729.1\|2041536_2042595_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002910727.1\|2042704_2043619_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004148804.1\|2043628_2044915_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_002910722.1\|2044911_2045787_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_002910721.1\|2045783_2046503_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	26.0
WP_002910720.1\|2046508_2047402_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910719.1\|2047685_2049329_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.8e-136	50.4
WP_002910717.1\|2049378_2049855_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|2049953_2050880_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152313.1\|2051183_2052479_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.3e-61	36.8
WP_004899032.1\|2052490_2053300_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004152315.1\|2053274_2054174_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910657.1\|2054283_2054766_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910652.1\|2055670_2056210_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|2056324_2056654_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_004148795.1\|2056824_2056986_+	hypothetical protein	NA	NA	NA	NA
WP_002910645.1\|2057222_2058563_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004152316.1\|2058559_2059213_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_025368109.1\|2059216_2060914_+	OmpA family protein	NA	NA	NA	NA
WP_025368111.1\|2063877_2064360_+	hypothetical protein	NA	NA	NA	NA
WP_085955172.1\|2064394_2065602_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_072199552.1\|2065733_2066585_+	S-type Pyocin	NA	NA	NA	NA
WP_002910593.1\|2066585_2067095_+	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2067091_2067598_+	hypothetical protein	NA	NA	NA	NA
WP_002910586.1\|2067834_2068344_+	hypothetical protein	NA	NA	NA	NA
WP_025368113.1\|2068637_2069993_+	hypothetical protein	NA	NA	NA	NA
WP_004200304.1\|2069993_2070503_+	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2070499_2071006_+	hypothetical protein	NA	NA	NA	NA
WP_025368114.1\|2071387_2072473_+	hypothetical protein	NA	NA	NA	NA
WP_004199323.1\|2072513_2072825_+	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|2072846_2073740_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_004217423.1\|2073785_2073902_+	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|2073923_2074817_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_038435084.1\|2074842_2074971_+	hypothetical protein	NA	NA	NA	NA
WP_004217421.1\|2075112_2075886_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	1.2e-11	28.1
WP_004152632.1\|2076061_2076952_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_072093175.1\|2077294_2077429_+	hypothetical protein	NA	NA	NA	NA
WP_072093174.1\|2077689_2077875_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2078172_2078439_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004198077.1\|2078442_2079600_+	hypothetical protein	NA	NA	NA	NA
WP_004152262.1\|2079583_2082994_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_002910495.1\|2083127_2084891_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152910.1\|2084920_2085937_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910493.1\|2085917_2086454_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152261.1\|2086456_2086900_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

2757317 : 2766731

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162471611.1\|2757317_2758952_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	9.0e-182	55.7
WP_025368139.1\|2759006_2760272_+	MFS transporter	NA	NA	NA	NA
WP_025368140.1\|2760302_2761391_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.4e-210	99.7
WP_004176262.1\|2761477_2761738_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_063864613.1\|2762035_2762896_+	class A beta-lactamase SHV-110	A0A077SL40	Escherichia_phage	1.4e-154	99.0
WP_002210513.1\|2762916_2763678_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_025368142.1\|2763938_2764841_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.0e-158	99.3
WP_025368143.1\|2764852_2766118_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.3e-232	99.5
WP_002210516.1\|2766110_2766731_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

3146787 : 3247898

102

Klebsiella_phage(39.22%)

head,integrase,holin,transposase,capsid,tRNA,portal,terminase,tail

attL 3193428:3193442|attR 3245459:3245473

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3146787_3147288_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3147404_3147851_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3147834_3148629_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|3148736_3149912_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3149943_3150636_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3150781_3151291_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3151295_3151634_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|3151623_3151863_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_025368237.1\|3152163_3153177_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3153234_3153336_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3153335_3153410_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3153527_3153653_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3153712_3153976_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3154106_3154745_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3154834_3155749_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004148037.1\|3156210_3156330_-	hypothetical protein	NA	NA	NA	NA
WP_004150784.1\|3156410_3157454_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|3157756_3158965_+	HD domain-containing protein	NA	NA	NA	NA
WP_004183662.1\|3159038_3160823_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004140497.1\|3161823_3163332_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_019705573.1\|3163386_3163530_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3163642_3164329_-	EAL domain-containing protein	NA	NA	NA	NA
WP_015958198.1\|3164726_3164897_-	hypothetical protein	NA	NA	NA	NA
WP_004190902.1\|3164936_3165569_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3166135_3166333_+	hypothetical protein	NA	NA	NA	NA
WP_025368238.1\|3166448_3167459_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3167455_3168862_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3168917_3169805_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3169821_3170328_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3170354_3170849_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3170939_3171125_-	general stress protein	NA	NA	NA	NA
WP_025368239.1\|3171746_3172940_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3173052_3173280_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_025368240.1\|3173334_3173880_-	cysteine hydrolase	NA	NA	NA	NA
WP_025368241.1\|3174201_3174675_+	OsmC family protein	NA	NA	NA	NA
WP_025368242.1\|3174792_3175374_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_023339918.1\|3175507_3175939_+	VOC family protein	NA	NA	NA	NA
WP_040120428.1\|3176193_3176505_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_025368243.1\|3176509_3176902_+	amino acid-binding protein	NA	NA	NA	NA
WP_025368244.1\|3176898_3177612_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025368246.1\|3179352_3180501_+	hypothetical protein	NA	NA	NA	NA
WP_025368247.1\|3180667_3181369_-	hypothetical protein	A0A0F7LBP9	Escherichia_phage	1.2e-79	63.4
WP_077253877.1\|3181365_3182586_-	RNA-directed DNA polymerase	A0A0F7LDS3	Escherichia_phage	3.1e-171	74.0
WP_071886209.1\|3183632_3184067_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	5.9e-16	93.0
WP_025368250.1\|3186252_3187101_-	hypothetical protein	NA	NA	NA	NA
WP_025368251.1\|3187252_3188302_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	3.7e-165	76.4
WP_025368252.1\|3188451_3188643_-	MarR family transcriptional regulator	Q8SBE3	Shigella_phage	4.6e-21	79.4
WP_071886210.1\|3188853_3189222_-	hypothetical protein	A0A2H4FSA1	Methylophilaceae_phage	2.3e-05	30.5
WP_025368253.1\|3189249_3189807_-	hypothetical protein	NA	NA	NA	NA
WP_077253878.1\|3190045_3190609_-	hypothetical protein	Q8SBE4	Shigella_phage	1.8e-36	56.8
WP_004892953.1\|3190659_3190812_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_025368254.1\|3190966_3192463_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	6.4e-126	63.7
WP_025368255.1\|3192531_3205236_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.0
3193428:3193442	attL	NA	NA	NA	NA
WP_017899002.1\|3205298_3205892_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	77.2
WP_025368256.1\|3205918_3206341_-	hypothetical protein	J9Q806	Salmonella_phage	2.9e-28	49.3
WP_025368257.1\|3206382_3207093_-	peptidase P60	Q6UAW4	Klebsiella_phage	8.5e-137	90.7
WP_017899000.1\|3207094_3207850_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.9
WP_017898999.1\|3207846_3208185_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_025368258.1\|3208184_3211541_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.2
WP_014228914.1\|3211773_3212139_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3212196_3212658_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_017898997.1\|3212689_3213091_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_017880258.1\|3213087_3213477_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_014228910.1\|3213457_3213796_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_023316689.1\|3213792_3214110_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.6e-45	89.8
WP_014907814.1\|3214090_3214351_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_017898995.1\|3214409_3215696_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.0e-216	89.5
WP_017898994.1\|3215773_3216694_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	4.8e-148	87.9
WP_025368259.1\|3216730_3217990_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	9.5e-224	90.5
WP_017898992.1\|3217989_3218169_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_012542167.1\|3218162_3219884_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
WP_017898991.1\|3220566_3220998_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
WP_014228902.1\|3220994_3221312_-	hypothetical protein	NA	NA	NA	NA
WP_040120429.1\|3221263_3221626_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	9.8e-57	80.8
WP_017898986.1\|3223375_3223726_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_025368260.1\|3223722_3224220_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	6.7e-80	85.8
WP_017880269.1\|3224219_3224435_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_023342896.1\|3225858_3226461_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
WP_025368261.1\|3226477_3227509_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.2e-95	49.3
WP_040120430.1\|3227708_3228101_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	3.0e-11	36.6
WP_077253879.1\|3228141_3228432_-	hypothetical protein	H6WRY6	Salmonella_phage	6.1e-17	56.9
WP_025368263.1\|3228443_3228677_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_004178082.1\|3228755_3230243_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_025368264.1\|3230937_3231642_+	hypothetical protein	A0A1B1IPD9	uncultured_Mediterranean_phage	2.5e-19	41.6
WP_072199635.1\|3231904_3232873_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.1e-182	98.1
WP_025368265.1\|3233482_3234163_+	hypothetical protein	NA	NA	NA	NA
WP_040120431.1\|3234531_3234972_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_025368267.1\|3234985_3235450_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.9e-61	69.5
WP_025368268.1\|3235442_3236426_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.9e-46	54.4
WP_014907826.1\|3236477_3237032_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|3237034_3237250_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_012542200.1\|3237351_3237741_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_039103071.1\|3238583_3238778_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3238820_3239165_+	transcriptional regulator	NA	NA	NA	NA
WP_025368269.1\|3239306_3241445_+	exonuclease	S4TNL0	Salmonella_phage	1.9e-99	42.7
WP_012542206.1\|3241497_3241743_+	excisionase	NA	NA	NA	NA
WP_025368270.1\|3241723_3242851_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	5.5e-122	61.0
WP_025368271.1\|3242884_3243931_-	hypothetical protein	NA	NA	NA	NA
WP_004150800.1\|3244118_3245369_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3245609_3246260_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3245459:3245473	attR	NA	NA	NA	NA
WP_004150802.1\|3246276_3246735_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3246791_3247898_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_7

3489490 : 3498963

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3489490_3491212_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3491238_3491958_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3492311_3492530_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_025368305.1\|3492659_3494939_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.1e-164	41.9
WP_002896520.1\|3494969_3495287_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3495612_3495834_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_025368306.1\|3495910_3497851_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.0
WP_002896440.1\|3497847_3498963_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004000

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP003999

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection