CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014547	Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300	3 crisprs	csa3,cas3,DinG,DEDDh,cas4,WYL	0	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014547_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014547_1

891728-891815

Orphan

Consensus_repeat	Method
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014547_1

>merge|NZ_AP014547|1|891728-891815|CRISPRCasFinder
CGGCTGCTACAACGGCGTGTGCGGTGGCTGGAACCCCGGCCAGGGTGGTTGGGGCCACGGCTGCTACAACGGCGTGTGCGGTGGCTGG

>NZ_AP014547|1|1|891728-891815|CRISPRCasFinder
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	AACCCCGGCCAGGGTGGTTGGGGCCA
CGGCTGCTACAACGGCGTGTGCGGTGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014547.1\|WP_005066013.1\|900462_901245_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_AP014547.1\|WP_005063565.1\|881968_882550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005063550.1\|891851_892772_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_AP014547.1\|WP_005065985.1\|882529_883627_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_AP014547.1\|WP_005100846.1\|888700_889534_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225852
NZ_AP014547.1\|WP_005065994.1\|889588_889804_+\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_AP014547.1\|WP_005066010.1\|899590_900337_-\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_AP014547.1\|WP_005063562.1\|883642_884374_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236115
NZ_AP014547.1\|WP_050551764.1\|902781_904929_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_AP014547.1\|WP_005066003.1\|895550_895706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239527
NZ_AP014547.1\|WP_005065987.1\|884370_885477_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841
NZ_AP014547.1\|WP_005065989.1\|886268_888671_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_AP014547.1\|WP_005063559.1\|885473_886151_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_AP014547.1\|WP_005065999.1\|890999_891443_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_AP014547.1\|WP_005063549.1\|892863_893427_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
NZ_AP014547.1\|WP_005063546.1\|895781_897302_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_AP014547.1\|WP_024571189.1\|897282_897717_+\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|377532
NZ_AP014547.1\|WP_005102410.1\|889826_890963_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_AP014547.1\|WP_005066001.1\|893377_895390_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_AP014547.1\|WP_005136726.1\|897810_899601_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215641

Protein	Function_ID	Function_description	E-value
NZ_AP014547.1\|WP_005066003.1\|895550_895706_+\|hypothetical-protein	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.90021e-05
NZ_AP014547.1\|WP_005066013.1\|900462_901245_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	2.37937e-40
NZ_AP014547.1\|WP_005063546.1\|895781_897302_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_AP014547.1\|WP_005063550.1\|891851_892772_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	6.9961e-72
NZ_AP014547.1\|WP_005065985.1\|882529_883627_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	9.72616e-35
NZ_AP014547.1\|WP_005100846.1\|888700_889534_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	2.00141e-48
NZ_AP014547.1\|WP_005065994.1\|889588_889804_+\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	2.36487e-08
NZ_AP014547.1\|WP_005066010.1\|899590_900337_-\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.51257e-69
NZ_AP014547.1\|WP_005063562.1\|883642_884374_+\|enoyl-CoA-hydratase	gnl\|CDD\|236115	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.	5.5316e-136
NZ_AP014547.1\|WP_050551764.1\|902781_904929_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	2.05178e-08
NZ_AP014547.1\|WP_005102410.1\|889826_890963_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	5.45097e-17
NZ_AP014547.1\|WP_005065987.1\|884370_885477_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.66766e-68
NZ_AP014547.1\|WP_005065989.1\|886268_888671_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_AP014547.1\|WP_005063559.1\|885473_886151_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.17233e-21
NZ_AP014547.1\|WP_005065999.1\|890999_891443_+\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	6.54669e-14
NZ_AP014547.1\|WP_024571189.1\|897282_897717_+\|DUF779-domain-containing-protein	gnl\|CDD\|377532	pfam05610, DUF779, Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.	2.92171e-69
NZ_AP014547.1\|WP_005063549.1\|892863_893427_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	6.62571e-07
NZ_AP014547.1\|WP_005066001.1\|893377_895390_-\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.71825e-66
NZ_AP014547.1\|WP_005136726.1\|897810_899601_+\|hypothetical-protein	gnl\|CDD\|215641	PLN03237, PLN03237, DNA topoisomerase 2; Provisional.	5.88485e-05

>NZ_AP014547.1|WP_005065999.1|890999_891443_+|SRPBCC-family-protein
MAAKLNSSIDVPLPPEEAWAHASDLRRFDEWLSVHTAWRSALPETLEKGTVIDSIVCVKGMYNRVRWTLQKYDPPTGLFLDGQGRGGVKVKLRVTISPKGSGSVVDFNLHLGGPAMFGPIGAVVAAALRSDIDASLAKFVQVFAAAP
>NZ_AP014547.1|WP_005102410.1|889826_890963_+|lipase
MLVLITAACARVEAEGVAPQPPSPPPGEVLSDVPLSLAPDLDAIADGHLIRYMSTSGATGTPTEVTGVVFAPKGEPPQAGWPIVSVGHGTTGLDDECAVSRAPDLRGYIWLVRNLSKRGWVVAITDYEGLGVPGPHPYLEPRSEGFNVIDAARAAVSLIPGASTKWAAIGASQGGQATWAASELAGNYASELEFVGSANLSPAADLTDMATHVGDGRYHWSQLSMMPTLLTGLSVTVPELRPENFLHGSFQDIPQDKALLLGCHNGLDPARSAAIGRLRAKDFHGTSPADPIVFAAALKRIALPLGPASGPMFVYAGGADRLIEAGWIHAAVRRACALGDTVQEVVSPGKGHVDPEGERLGVQWIADRFAGLPAPSNC
>NZ_AP014547.1|WP_005065994.1|889588_889804_+|antitoxin
MADFKGLIDKLKSLLAGNKDKVNEAVDKVGDTIDSKTGGKYSAVVDKVQDAAKNAVEKVEGAAAPKDGDAQ
>NZ_AP014547.1|WP_005100846.1|888700_889534_-|class-I-SAM-dependent-methyltransferase
MLVRVTDPVKITLTGAPETMLATLYGRAQDATSPNSVLHDHYAAEAVARIDYDFSKTKIKGTQAIGVALRARQLDDWTSEFLTAHREATVLHLACGLDTRVFRINPSETVRWVDVDYPDVIALRRALLPCREGDYRMIGSSVSEATWLDSIPADRPTLAVFEGLTMYLTEAEGQSLIRRITGRFPSGQLAFDCYGSIGIKLQKLVPAVRNAGATLHWGIDDPGQIEALHPGLRCVSDLRSTDVAGEEHLPLSGRIQMKVISHLPALRDIGRIMRFSF
>NZ_AP014547.1|WP_005065989.1|886268_888671_+|cation-translocating-P-type-ATPase
MATIEGLTISGLTAAEVAERVAQGKTNDVPSRAARSVSDIVRANVFTRINAILGVLLIIVLSTGSIINGAFGLLIIANSAVGIIQELRAKQTLDKLAIVGQTRPLVRRDGAATALAPNEVVLDDIIELGPGDQIVVDGEVIEESALEIDESLLTGEADAIEKTIGSQVLSGSFVVAGSGAYRATKVGREAYAAKLAEEASKFTLVHSELRNGINKILQFITYLLLPAGALIIYTQLFTTDDSWQESVLRMVGALVPMVPEGLVLMTSIAFAVGVIRLGRRQCLVQELPAIEGLARVDTVCADKTGTLTENGMRLADVRFPDRDGDEDALAVLAQLAADDPRPNASIAAIAEAYDTPPGWETTAIAPFSSAKKWSGASYGDHGNWVIGAPDVLLDPADAIATAAEEIGARGLRVLLLASAELSVDDAHAPGAVTPRALVVLEQKIRPDARETLDYFASQHVSIKVISGDNAVSVSAVAQTLGLTGAAVDARTLPTDTDKLAATLADATTFGRVRPDQKRAMVKALQSHGHTVAMTGDGVNDVLALKDADIGVAMGAGSSASRAVAQIVLLDNKFATLPYVVAEGRRVIGNIERVSNLFLTKTVYSVLLALTVGLAGLGSKILHYGAVPFPFQPIHVTIAAWFTIGIPAFILSLAPNNERAQTGFVRRVMLSAIPSGLTVGIATFLSYLLARQILHVSGNSTQASTAALITELVAAVWVLAVVARPYQWWRVVLVALSGLGYVAIFAIPLARKAFMLDPGNLAVTGPALGIGIAAAAVIEAVWWLQGKWSGQLRHFWATGED
>NZ_AP014547.1|WP_005063559.1|885473_886151_-|class-I-SAM-dependent-methyltransferase
MTSNELPDWDATYQGKGELFQGEPPWNIGEPQPELAALIDAGKFHGTVLDVGCGHAETSLRLAALGHTTVGLDLSPTAIEAARAAAAERGLTNATFEVADITDFSGYDGRFNTIVDSTLFHSIPVEAREAYLQSISRAAAPDASYFVLVFAVGAFPPGIGPNAVTEDELRAAVEPYWAIDELSSAYIHSNIPEVIPGANFEMPVFHKDEKGRNKQPAFLLQAHKR
>NZ_AP014547.1|WP_005065987.1|884370_885477_+|MBL-fold-metallo-hydrolase
MSVRALWVGAGAAIASTWIGRALRDVPQTLGASKGRIAEVAKGSPQYRGGTFHNAEPARQFSPDAETTTVVWDVLTRRSVGTPKGQVPLAVPEFAGPPADLAATWFGHSSVLVEIDGYRVLTDPVWSDRCSPSRVVGPHRQHPVPLELSALPALDAVVISHDHYDHLDMDSIIALTRSQNAVFVVPLGVGAHLRGWGVSPARVIELDWDQSHQLGKLTLTCTQARHFSGRSIARNTTLWASWAFAGPKHKVFFGGDTGYTKAFKVIGDTYGPFDLTLLPVGAYNTSWADIHMNPEEAVQTHLDLATAQAPLLPIHWATFNLALHPWAEPIERVLAAAEEQGVTVVTPRPGQRADARQPAAPDDWWRLS
>NZ_AP014547.1|WP_005063562.1|883642_884374_+|enoyl-CoA-hydratase
MIGVTSDGPVTTIELQRPERRNAVTYELALAFAEEVKKAAETARAIVVTGQGTSFCAGADLSSGAPDPDKFADAWQHSIKSVDAADIPVIAAVNGPAIGAGVMLAMVADLRVVSETARFQFPVAKYGIALDNWSIRRLTSLVGYGRARAMLLAAEPLDAQTALQTGMANRIGELADAQAWAAELAGFAPLALKHAKRVLNDDGAFEDQWPEHKELFDKAWGSQDIIEAQVARIQKRPPNFQGA
>NZ_AP014547.1|WP_005065985.1|882529_883627_-|NAD(P)/FAD-dependent-oxidoreductase
MAPMTTVAVIGGGQAGIAAGYFLRRRGLEPLSRRQPADAPGHGFVILDHSPGPGGAWQFRWPTLTLDNTNRIYQLPGLPFDEMGTIRASTTMPRYFGEYEDRYALDVRRPVHVRAVRPARGGFTIDTSVGEFPVDGLINATGTWDKPFVPFVPGAGTFRGRQLHTHDYQRPEEFTGQHVLVVGGGISAVQLLIEIAGIDSVTTSWVTRREPVFVTDLTVDRLRAAVAGVDERSRRGEPQRSVVSATGLPWTAETAEAARRGILTRRPMFSRITPTGVTWPDGSALEVDVILWCTGFRHALDHLAPLHLRNGRGGITMTGRLLTQVAGQPAIHLLGYGSSASTIGANRASRAAVVELMNYLEGRTA
>NZ_AP014547.1|WP_005063565.1|881968_882550_+|hypothetical-protein
MCAALGVGLLSGGAAVAHADPAFPDLSGFAVVPPDGFFVTNENSSVRSIHFSTPDGIGCMFRASPNMTPTSRQRLSCDGAVPGIPGDAPNAPNVPGIGGASANVPGLGGVNIPGVGTCPMGTVAQKGDGAFEISKGAWSCGTKPEAPLLNVGQKLTYGNVTCAVGAGSVTACQVVTGDQKHGFVLQPSGSTSF
>NZ_AP014547.1|WP_005063550.1|891851_892772_-|LLM-class-flavin-dependent-oxidoreductase
MRFSIWGQTNQSWADLLDIAQYADDGTWRAFYAADHFMSHADTAEERTDFHEATALFAALAAATSRIRLAPLVLSMTFRHPAVLANWAATVDHVSQGRFTLGLGAGWQENEHQRYGLELGKPGARVDRFSEGLQVITGLLSEPATTVDGQYYRLAEGICEPKPLQRPLPILIGATQPRMLALTARYAHEWNQWSSPGTFREVSGRLDAAAEKIGRDPATIWRSTQARVIVTDGPQSEARAAETAAASPIPVLYGTAERIAEQMAPWAQEGVDEVILPDHLLGSGSARRDAYDALAQALRPLSNEKG
>NZ_AP014547.1|WP_005063549.1|892863_893427_+|TetR-family-transcriptional-regulator
MIAAAIEVAGTMGIGGLTYRSVDAAANVPSGTTSNHFRTRDALLLGAILEIEKLRRAFWRALVTEINPTTVSDLVGIGTAYANGAVGAMSTRVRAYMALLMEGWSHPELREPLQRGRDAQIPRTLHLMCKVDPKTPQLHAEIFQDYLTGIIYQQLANPVADFNPRPGIEALLTALVTPPQTPRAAQR
>NZ_AP014547.1|WP_005066001.1|893377_895390_-|MFS-transporter
MISVQRRNLIFVAVLLGMLLAALDGTIVATALPTVVADLGDAGHQSWVVTSYLLASTVATAVMGKFGDLFGRRTVFITCIVIFAGGSLLCGMAGSMAMLVGARAIQGLGSGGLMVTATALIGEIIPMRERGRYQGILGAVFGVTTVIGPLLGGLFTDHLGWRWAFYINLPISVVVIMVAAGAIPALAKATRPVIDYWGIVLIGLGASALTLATSWGGTTYPWSSPVIIGLFASSIAAIGTFVWVESRVPEPILPPRLFRDPVFTICCVLSFVVGFAMLGVMTYLPTFMQFVNGVSATVSGLRTLPMVAGMLITSTGTGTLVGRTGRYKRYPVAGTAIMAIALVLLSRMNDSTPFVLQSLYLFILGVGIGASMQVLTLIVQNTARFDDLGVATSGVTFFRTIGSSFGAAIFGSLFSNFLTRELSSVNTPPQATQSPQALHALPHDAAVPVIHAYADSLDLVFLCAAPVAAVGFVLALFLKEVPLRGADTSLAVDMGEGFGMPNSVSPDKLLEIAIGNAMRGFPHVGLRKLREHAGVSMPIAPLWALVQANRFLRATGSAEVSRIAQWYRIPPEIVDPAFNELVANGYALRTNDHIWLTDSGREEVDKISEAINQYLIERLSRTPDFEDRADREQIQAALERISRRIVTDTDWRENPIAALPAASGAASPAR
>NZ_AP014547.1|WP_005066003.1|895550_895706_+|hypothetical-protein
MCGYGCLASLPEGASGCTTVELKTNFLGAAREGKLTAAVFRCTQLVLWPRG
>NZ_AP014547.1|WP_005063546.1|895781_897302_+|aldehyde-dehydrogenase-family-protein
MAKYAAPGTEGSAVTFAPRYENFIGGEWVAPADGQYFENASPIDGKVFTQVARGTAPDIEKALDAAHAAAEGWGNTSAAERSNALLRIADRMEQHIERLAVAETWDNGKPIRESLNADIPLAIDHFRYFAGVLRAQEGSISEIDHDTVAYHFHEPLGVVGQIIPWNFPLLMAVWKLAPALAAGNCVVLKPAEQTPASILVLMELIADLLPSGTVNVVNGFGVEAGKPLASSPRIAKIAFTGETTTGRLIMQYATENIIPVTLELGGKSPNIFMPDVMAADDAFLDKALEGFTMFALNQGEVCTCPSRALVHASIYDEFIARAITRVEAIVGGDPLDEDTMIGAQASNDQYEKILSYIDIGRQEGAQVLTGGDARKVAEYPDGAYIQPTVFAGTNNMRIFQEEIFGPVLSVAKFDSLDEALKIANDTLYGLGAGVWSRDMTNAYRLGRGIKAGRVWTNCYHQYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNILVSYSPDAAGFF
>NZ_AP014547.1|WP_024571189.1|897282_897717_+|DUF779-domain-containing-protein
MQRASSDEGSPGESRILINRVELTPAAAELLASLVAKHGPVMFHQSGGCCDGSAPMCYPRGEFRVGASDVLLGEVSRDTPFWMSADQFEYWSHTHLTVDVVPGRGSGFSLEAPEGVRFLIRSRLFTDDEVLALANQPVRTGADG
>NZ_AP014547.1|WP_005136726.1|897810_899601_+|hypothetical-protein
MHVGIRTVAVAAVCGLCVGAGVDARAVRPNLSIAGTPKTRSVSSQAVSLASFSDLLAAAAPQNDAAAQMNSVGGGAVSSTDLIGTVAKLLAAPNIMQSSVTPGINTVAVDTVDSPSSEPVDPPTGQPADPPAADEPAPPTNFPGERPAFGTPSYFAQLAFAVFHVVALPITVPVQFFLGSAEGVPTVIAAAINDLSGLLGQIPGLSPQQPTEPQPQQIAQSSSPLQKQAAAETGPTTDPEPPAEPLPTNFPGPRPAFGTPSYFAQLAFAVLHVLALPITVPVQAIIGKTEGVPSVIVAALNDLSSLLGQVPKLSAPVTDTKTTPQYSTSRQADKAGPTLDSASEKPETATSGADAKTSKIERNEHEGKTADKAAEAPKAEHETKPGAASEGTPKTDSAKEVVESKADPTKVVESKADPTKAVEPKADPTKVVEPKVDPAKVVEPKTDPAKAVEPKADTVAEPAKPESSKAEVAKPVTAKPETKVQPAKPESAGPVKVTRDSLKSTPGETGTTGGTKTTEGSKGSVTDSKTPAASTDTKVHDGLKPAVGAKPDKPADKPSTEKSSSEKSGSSSEGSSHSSESKSHSSEGKSHSGSKD
>NZ_AP014547.1|WP_005066010.1|899590_900337_-|peroxide-stress-protein-YaaA
MIVLLPPSETKHEGGDGPPLRLNELATPTLNPLREALVDELIALAAEPDACRQALGISASQDAEIQRNAELRISPTMPALHRYTGVLYDNLDVTSLRGASATRARERLAVGSALFGLLRADDPVPAYRLSASSKLPGKPTLAARWRPVLEPVLAELAAGELVVDLRSGSYAGLGRLPHAVTVDCLTEHPDGRRTVITHFNKAHKGKLARILAGSRAEPNDAASVATVARRAGLHVERDGNTLTIVVSP
>NZ_AP014547.1|WP_005066013.1|900462_901245_+|VOC-family-protein
MPTRDETPLGAPAWIDLASSDLEKSKAFYSALFGWTLQDAGPEYGGYINAHKDGKAVAGMITNNPEWNAPDAWTTYFATDDIDATLQKAVAHGGTNCLPPMEVPQLGYMALFADPAGAMVGLWQPLAHKGFQLVGEGGAPVWHELNTREYDRAVDFYTTVLGWNTKIEGDSADFRYACAQHDGAPIAGVNDASVGQWALPEGVPAHWAVYFGTDDTDAGAAKATELGGVVLAPAQDTPYGRMALIRDTTGAAFWLCSVDS
>NZ_AP014547.1|WP_050551764.1|902781_904929_+|hypothetical-protein
MPTIQTLSASPEQHRTVSTQAYVLTSNDGTLSPASIGSLAALPGVTTAAAPTPPEGSTWPSANPLVNLAVGPLQFDPKFSRSPVLASPFTIVNAPFQLLTGQSIVNPNGTTSAPTVQNLINAETTALGLLAGVPAAYVANTIAVVQAIAQNPGSLLPSGLSVPAVTTLSAANTTAVSPTTKTLASTAVTAAATPTAPAGSTWPSTNPVVNLLVGPLQFNSKWQSPVLASPFTIVNAPFQLLTGQSIVNPDGTTVAPTVQNFIAAETKAFGLLVGLPGAYVANTIAVVTALSQNPGSILPSGLIQPTATTTANPTVAKTAALSLPESPTTATSATTNTLAAPTASAPTASAPTAAATPTAPAGSTWPSTNPVVNLLVGPLQFNSKWQSPVLASPFTIVNAPFQLLTGQSIVNPDGTTSAPTIQNLINAEAKAFGLLVGLPGAYVSNTIAVVTALTQNPASLLPAGLSAPAATTTATGVKAPTSILSALGKTSTTAAKIATTEQKTAVEGTKAAESKATTSKSSPEAEPAKAGAAKPANPAEAVTPAEPAKPAEPAKSATPAESVKAAEPAKPATPADAATPAEPAKPATAADAAAKPVDAAKPAEPKVNVNVPKVKLPTPVTKVGEVSGGVTPKADDSAKADKSEKTDSKTDKADKGSTPKKPEKDSSSAKKPEAAASSSTKSESGSSSSSSDSHASSSNGSSSSGSSHSDSHKAS

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Crispr_ID: NZ_AP014547_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014547_2

4382353-4382471

Orphan

Consensus_repeat	Method
TCGTTGATGGCACTGGTGTGGGCACCACCACCGACAGCCGTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014547_2

>merge|NZ_AP014547|2|4382353-4382471|CRISPRCasFinder
TCGTTGATGGCACTGGTGTGGGCACCACCACCGACAGCCGTGCTGCCGCCAACAGAACCCGAACCACCCAGGGCATCGTTGATGGCACTGGTGTGAGCACCACCACCGACAGCCGTGCT

>NZ_AP014547|2|2|4382353-4382471|CRISPRCasFinder
TCGTTGATGGCACTGGTGTGGGCACCACCACCGACAGCCGTGCT	GCCGCCAACAGAACCCGAACCACCCAGGGCA
TCGTTGATGGCACTGGTGTGAGCACCACCACCGACAGCCGTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014547.1\|WP_005127470.1\|4378020_4378677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005065069.1\|4374928_4375864_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_AP014547.1\|WP_005065074.1\|4376415_4376889_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NZ_AP014547.1\|WP_005071406.1\|4373440_4374292_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_AP014547.1\|WP_005071407.1\|4374307_4374787_-\|thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239309
NZ_AP014547.1\|WP_005138124.1\|4376882_4377269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005065079.1\|4380171_4382055_-\|dynamin-like-GTPase-family-protein	unknown	unknown	gnl\|CDD\|223771
NZ_AP014547.1\|WP_005071414.1\|4384793_4385675_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_AP014547.1\|WP_005064111.1\|4387451_4388051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005065072.1\|4375890_4376358_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_AP014547.1\|WP_005138127.1\|4377347_4378001_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005064116.1\|4384107_4384797_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_AP014547.1\|WP_005071419.1\|4390145_4392515_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_AP014547.1\|WP_005064113.1\|4386051_4386975_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320685
NZ_AP014547.1\|WP_005071418.1\|4388232_4390053_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|223520
NZ_AP014547.1\|WP_005071412.1\|4378681_4380175_-\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|223771
NZ_AP014547.1\|WP_030142800.1\|4395713_4397024_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_AP014547.1\|WP_005071421.1\|4392673_4395706_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223325
NZ_AP014547.1\|WP_005071417.1\|4387055_4387439_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_AP014547.1\|WP_005064114.1\|4385692_4386055_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747

Protein	Function_ID	Function_description	E-value
NZ_AP014547.1\|WP_005071414.1\|4384793_4385675_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	1.37975e-22
NZ_AP014547.1\|WP_005065069.1\|4374928_4375864_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	5.23876e-110
NZ_AP014547.1\|WP_005065074.1\|4376415_4376889_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	3.04741e-06
NZ_AP014547.1\|WP_005071406.1\|4373440_4374292_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	6.45798e-17
NZ_AP014547.1\|WP_005071407.1\|4374307_4374787_-\|thiol:disulfide-interchange-protein	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	3.53071e-32
NZ_AP014547.1\|WP_005065079.1\|4380171_4382055_-\|dynamin-like-GTPase-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	1.86063e-21
NZ_AP014547.1\|WP_005071419.1\|4390145_4392515_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	7.62166e-16
NZ_AP014547.1\|WP_005065072.1\|4375890_4376358_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.00103577
NZ_AP014547.1\|WP_005064116.1\|4384107_4384797_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.52765e-31
NZ_AP014547.1\|WP_005064113.1\|4386051_4386975_+\|M56-family-metallopeptidase	gnl\|CDD\|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.6021e-30
NZ_AP014547.1\|WP_005071418.1\|4388232_4390053_+\|Hsp70-family-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	1.50388e-30
NZ_AP014547.1\|WP_005071412.1\|4378681_4380175_-\|dynamin-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	3.00416e-10
NZ_AP014547.1\|WP_030142800.1\|4395713_4397024_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_AP014547.1\|WP_005071421.1\|4392673_4395706_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.01154e-88
NZ_AP014547.1\|WP_005071417.1\|4387055_4387439_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.80091e-14
NZ_AP014547.1\|WP_005064114.1\|4385692_4386055_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.20256e-26

>NZ_AP014547.1|WP_005065079.1|4380171_4382055_-|dynamin-like-GTPase-family-protein
MSDTAQDGQQQLVLINELLGHVRKIAGENDRGDLIDRLDRADQLLVDRPLRVVVAGQLKQGKSQLVNSLLNMPVARVGDDETTSVTTVIGYGEQPSAALVVAPAEQYDGGGLAGEPEIIPIPVADIGKDLKRAPQAQGREVLRVEVKVASPILKSGLCLVDTPGVGGFGQPHLSSTLGLLPDADVMLMVSDLSSEFTEPELVFIQQALDLCPVAAIVNTKTDLYPHWRAVVAANSAHLQRAKIAVPAIAVSSALRSHALQLNDKELNTESNFPALVTFLSNAIADQQASTRQQAIAEIGSASEHLTLTLEAELSALQDPQSRDELTSDLERRKREAEEALAHTALWQQVLGDGITDVSTDVEHDLQSRFRRILQRTEEVIDRTDPTKNWAEIGAKLEQAVANSVGNNFVWAHQRAMHLAAQVAETFAIDGLESVKMPRLRASEMGADLSDLKSLSKLEAKQIKLGHKAITGLRGSYGGVIMFGMLTSVAGLGMFNLISLGAGAMLGKKTYNEDMENRMLRIRGEAKTNVRRFLDDVSFVVLKESRDRLRLVQRQLRDHFREIANQTTRSLNESLQAAIASARLEAEERDARTNEVERQLHILRQVNSHVERLQPTDEQAARRATRDV
>NZ_AP014547.1|WP_005071412.1|4378681_4380175_-|dynamin-family-protein
MSSVAQARVIIGDAMLAYQNDSRYLRVAEPHDELRRIAARLDEPIRVAIAGTLNAGKSTLVNALVGEDIAPTDATEATRIVAWFRHGAAPRVTANFFSGVRQDIPIRREGGLSFELDRLDPASVADLDVNWPAPELNEITLIDTPGTSSLSTDVSERSLALLVPEDGVPRVDAVIFLLRSLNAADIGLLTQIGKLVGGERGGAVGVVGVVSRADEIGVGRLDAMLSAREVAARFAGEMERTGICQAVVPVAGLLALTARTLRQAEFVALQRLAELDPQVLAKALLSVDRFVREDDSLPVDAQTRAALLHRFGMFGIRISVAVMRVGVTDATGLAEELLERSGLVELHNIIANQFGQRAGILKSHTALLSARRVLTTYPVHGGRRVIDNIDPLLADTHAFDELRLLAELSSHSTTLTEHETMLIRRLLGSFGTDAAARLGLDETRSDPRRAALDAVGRWRARAEHPLNDPFTSRLCLAAVRSAEGILTQLSAHDRPAY
>NZ_AP014547.1|WP_005127470.1|4378020_4378677_-|hypothetical-protein
MMMRLFVATLALVAGFSTATAAAEPTPSPAGPASKPVPAGVWISPAEIPMNSDYHWSAVSPTATGRAAFLSMRLCGSPSADVLPPASAIATQAASGVAASVVQAAGQWPEGNTEGASAFQSGIRSQLNYCPGVGDVISVDLRPAPSWYGFAATLLIGKERDNPTSEVHIYNVVPPESGTVSELAVTVPRTGREPSPWKPVDDATVLRALAQPLCKGSC
>NZ_AP014547.1|WP_005138127.1|4377347_4378001_-|hypothetical-protein
MRGWLRAISALVVISGLGAAVPAAAEPKSLPDSVWINPRDIPLDRASHWAPLPRSAAPVDRPAFWSANLCFSLGESLPQSPESASATVSSDESGWTAVEVVAHWPGEAVVTDQYASTVYRSLRGRLDHCFNAIGAQVSVTDLTNGHAATVTLPAQGGKQPQYHLYVVQPPGTGTVAELTVTNAITGAAGASWVEADDHQVLRDLAAPICRTAKSTAC
>NZ_AP014547.1|WP_005138124.1|4376882_4377269_-|hypothetical-protein
MHGRGVLSGVCGIATIIAMAVLLTPVSIQVGTGETAQTVTCGMPVGPRLSRTAELDKISSAQNQSTNYHDQCAAKLDTRRMWAIPIGVLSFVIALCAAGHLWKENAPSSSPAQTRHGLSGPPGMRMAH
>NZ_AP014547.1|WP_005065074.1|4376415_4376889_+|hypothetical-protein
MFNQQYHDQGPDQPNPWYKQPAVLIALAGAGVAVVAVIAALIITRSDDKPAPAGNTSSVSSTTSSTPTDSGGGGHEGHGGHGGGNTTVTETQTVPESPTSQDTTTTEPTTTTTTTTEPTTTTTQPTTTTTQPTTSTRPSVVVPIPGGGNIQVPVGGQ
>NZ_AP014547.1|WP_005065072.1|4375890_4376358_+|hypothetical-protein
MSQTPKPPEDESYFSEMIKESEKPTPWYRTGPAIVGTIAAIIAIVAVLMTIVLSTDKRVVRDNTPLTSTPSVSSTAPTAQPTSPSESSTAVPTATEAPPEPVAPAQTSEPTYYETPTSTIYRYPIPAIPSPPPIPPIPAIPQIPQIPQIPQIPGL
>NZ_AP014547.1|WP_005065069.1|4374928_4375864_+|LLM-class-F420-dependent-oxidoreductase
MDFRVFVEPQQGATYSDQLRVAQAAEELGFSAFFRSDHYLAMGGADGLPGPTDAWVTLGAIARETTAIRLGTLVTSATFRHPGPLAVTVAQVDEMSSGRVDFGLGAGWFSEEHEAYAIPFPSLGERFDRLEEQLEILTGLWTTPTGDTYSYAGKHYTVTDSPALPKPVQEPHPPIVIGGLGVKRTPALAARFAAEFNLPFQPVDVIADRYARVAQAVEAAGRPADSMVYSAAFAVCIGDTDTEIARRAANARREVEEITENSPLAGTPDAVAEKLSIYVDAGVQRVYVQLLDIRDLDHLEFFASTVIPQFS
>NZ_AP014547.1|WP_005071407.1|4374307_4374787_-|thiol:disulfide-interchange-protein
MAVLALTLSVGLSGCSGTEKGETSSAPSSRLLNFTAQTIDGADFAGSSLAGKKAVLWFWAPWCPTCQKEAPDLQKATTAHPDVTFVGVAAQDQVPAMRDFVTKYGLTFIQLADTDAKVWALYDVTHQPAFAFLGSEGKAEVVKSPLSGPELDKKIRQLH
>NZ_AP014547.1|WP_005071406.1|4373440_4374292_-|cytochrome-c-biogenesis-protein-CcdA
MIDTAALTFALGAGLVAALNPCGFAFLPGYLGLVIAGSDGTASRMTAIARAATATVAMAGGFLTVFGVFGLVISPVVASAGRYMPFATVVIGVVLVALSIWLLCGRELTLVLPRVSGGAPTASLLSMFGYGLTYAVASLSCTVGPFLAVISTTFKQGSIVSGVLAFIAYGVGMTVTVGVAALAVALLGNSVQATMRKVLPCVGRIAGVIVLLTGLYVAYYGYYEIRLNFGDGSADDPVINAAGAVQTWLVGVVDATGVWPPIGGIALIVAVAAVSSYAVRKGR
>NZ_AP014547.1|WP_005064116.1|4384107_4384797_+|thioredoxin-domain-containing-protein
MRRSENGKRDIWIAGILGVVIVALATYLLVDHRSQSTASTDSPAVTGHHSSLARLHPHDPLALGPVDAPVVLIIYSDYRCPFCAKFSRDTEPQLIERYVNAGKLRIEWRDLPIFGTQSVQAAKAGRAAAEQGRFWEFNRAVYRHAPDRGHAELTDKILLDRAREAAVPDLARFQTAVEGDRLLPAVQQDIQEAVAIGAASTPVFLINDQPVVGAQPLDVFISVIEQAQR
>NZ_AP014547.1|WP_005071414.1|4384793_4385675_+|cytochrome-c-biogenesis-protein-CcdA
MIDVGVLGALLGGVLTLVSPCSALLLPSFFAYSFDRTGLLLRRTGLFYLGMMTVLAPLGAGVGAIGALLTEYRSQVTTTGGLLMTTLGAAIIAGIGFRIGPAARLAARLDLSSALSVLLLGTVYALAGFCSGPLLGSVLTVAAIGSSPIYGALLMSLYSLGMAAPLFALAFAWGKLGLSRRRWVRGREIRIGRFRTHSTNLVSGGMFIAIGVFFLATDGTAALGGLTGSDTQYDVQARLQSLTAGLPNAAVALGIACAAFVVVLMRLLRARITAAGDARKRSDSTREDADDRR
>NZ_AP014547.1|WP_005064114.1|4385692_4386055_+|BlaI/MecI/CopY-family-transcriptional-regulator
MRDMFGLGEREATIMELLWSVAEPVTVRDVLDRLERPLAYTTVMTVLDNLHNKGHVTREKVGRAFQYRAAETREAAAARMVREVLAASGDAEGVLLHFAGATSPEESTVLRRILRRGGLA
>NZ_AP014547.1|WP_005064113.1|4386051_4386975_+|M56-family-metallopeptidase
MTVALVLMAGAALIGVAGPACLRPTVRPSLLPAAALAAWLGALLAFLVLTTLSATLLLFPHVLDTSGVRTLVGGCLSGTVPHSSFGTLVQLGISLLPLTILARVAVVAIRSLRCARRCRARHFWMLQAATCRSGEVHWIDDPRPIAYSLGGARGAVVATHGVRHLGERQCAAVIEHEMAHIRGRHHVAVLCADIAAAALPMLPLMRRAPAMVRLMVELAADDAAARVHGPPTVHAALLAMSQSAVAVPGVLHMSSESVAVRLLWLRTQGTAGRTPMGRARLMLSFALLPTTLAGSAVVALFRAYCTF
>NZ_AP014547.1|WP_005071417.1|4387055_4387439_+|DoxX-family-protein
MIPTGARLVFGVIFLLEGTQKVFGWWSGSPTGSGHPEPFLNWPYWWAGVFELVLGTLLTVGLRTRLAAVLAAGMMAYAYFFEHLPVHWEPMQNGGAFAATFCWGLLLLAVTANDTRLSLDRVLARRA
>NZ_AP014547.1|WP_005064111.1|4387451_4388051_-|hypothetical-protein
MGNNLLDFVMALVRDQDMAAQYAANPERVIADAHLDGVQPSDVSALIPVVSESMPSISQLAAHPTASDLTHAAQIPADNIWASGAAVSAFDSPFTAPTHDPSLDAGLHAATDAVTDLAPRQDAITVPDQFTAPTDSAVATIDQFQAPLQSTDGGFEPQQFGADAGVTGSADPGLHDPFFDQGHLGHHPGIDHDPGIDHF
>NZ_AP014547.1|WP_005071418.1|4388232_4390053_+|Hsp70-family-protein
MANALGLSIGATQLVATPDDPQSQPVVRSSILTLHEDGPPEVGVPSQPGLTLTGFVGRVGDPVGIVAADGSVHRAEWALTEAMRVLIADAVSSANFTAPPVLSASIPAHWSPQTVNTLRDAIDRVPAFAPGGRQLKLIPDARAALESLAAGPGTPDRGVMVVCDLGGSGSSITLADAARGFQQIGQTLRFADFSGQQIDQMLLTQVLTDLNQDPEGTTSVGALTRLRDQCRLAKERLSGDTATSVPVQLPGITTDVRLTRAELEGHLRGPLSNLINAIQDTVERNGIHPANITAVASVGGGASIPLVTQQLSERIRVPVITAPQPQLAAARGVALLATRPDLPPQDATAMRPVEQPPGDATMMRPVPTGTGTFAAPVAAAASEEPELAWSQDDSAPDLAPLQETGYQSGYTVDLDDEYQGPTEATNARPELRFSHGPYADGDDYDDYPPLPWYRRPLVWFIAAAAVAGIAFTGMMVSLTSSESPAPATTTPSVNVVPSTGDAPAEPPPSPEPPPPPQTHTVTQSVQPPPPSPEPPPPPPPTTTTTTTTPPTTTTTTTTTTTTTTTTTTPPTTTTTQPTTTTTQPTSTSRPAITIPGLPPIPIGPRN
>NZ_AP014547.1|WP_005071419.1|4390145_4392515_+|LuxR-family-transcriptional-regulator
MKVLVNGTAGSGKTFVLSRIREALGSAGTPAVNHVPEAAPGPNTGPFVIDDADSLTDRQLETLRAVVENDPAAIMVVAAAPRRNPALRALFQALERESPAITLGPVNATDIGRMSPLAAPFAEQIAAASGGVLALTTAAVERLGDPDPLQSALRAIDTRVDELLRRLSPMAQAAVLLMSLDPGIGASDVAAALALPDAADLVDGALASGLIAGPGHVAFAARVHGCAARLLGAARHLDLERSLLRTQLEMGSVSADLALALVAHGLRDLEVARLLSNWATTESDPLSAADLYRAALTAGAEPDPIRVPLAESLARAGDLAAAAAQADEALASTDPAQRTAGVRVAAAIACHNGDSGQAAALYSWLGADMDGLTALSASPVFVGTGQLTNGRKSLEDNVGAPPTTSATAMRNAALGVIASVEGRGQEALSLLGQAVTQQPSTSSFTPDSTVALAALTMLHSGDTARARSILTGAIRADRRHDVFGVRHRLLAAWIAMLSGDLSGAVQWLPGAEVVLSRRDRLFAESLRTGIARRHGDTGPLRQHWQASMDALSAYSIDLYTLLPVGELWVAAARLRTLDVMTHHLDRAFAVLAHLGDPIAWSAPLRWAGVHAAILTNSPENLAPHGQALAAGAGSSTYARTLATAGRTWLRVLANHVDGEEVDSAARMLADTGLGWDATRLASQAALHANDPKVAAAMLALARDLRSPSAAADGESTPSSAAHSPTSTRLSEREREVAELLLRGLPYRDIGAQLFISAKTVEHHVARIRRRLGAESRSDMFSMLRAILTP
>NZ_AP014547.1|WP_005071421.1|4392673_4395706_+|4Fe-4S-dicluster-domain-containing-protein
MSTATITLGIIGVIFSLVAWGSFFGGVVKMVRVILSGQPDRTRFRPFLPRLKQLVVEVVAHTRMNKFRTVGWAHWLVMVGFLGGFPLYFESYGQTFNPEFHWPIIGDTFLWHLWDELLGIGTVIGIVTLIIIRQLNHPRKPERLSRFGGSNFFAAYTIEMIVLVEGLGMVLVKSGKIATFHNSHPSSDFFTMNVAQLLPESPIMVSVFAFIKMMSGGLFLLLVGRKLVWGVAWHRFAAFFNIYFKRNADGSVALGAAKPMMSGGKVLEMESADPDVDAFGAGKVEDFSWKDLLDVTTCTECGRCQSQCPAWNTGKPLSPKLLITSLRDHTYAKAPYLLAGEDKSKLSEAEIAEGERQLVGGEGAVIDHEVLWSCTTCGACVEQCPVDIEHVDHIIDMRRYQVLIESEFPGELAGLFKNLENKGNPWGQNAKDRLNWIEEVDFDVPVFGQDVDSFADFEYLFWVGCAGAYEDRAKKTTKAVAELLALAGTKFLVLGADETCTGDSARRAGNEFLFQQLAMQNIELLNSVFEGVEQKQRKIVVTCAHCFNALGNEYPQVGGDYQVVHHTQLLNRLVRDKKLVPVAPVSQDVTYHDPCYLGRHNKVYTAPRELIGASGAAITEMPRHGERSMCCGAGGARMWMEEQLGKRINIDRVDEALSTPASKIATGCPFCRVMLTDGVTARDDSAAVEVVDVAQLLLESVGRTEDIRKALPAKGTAAAAAAERAATKTAEPEPVVAEEEAPATTKTEAAAPATEAKPVSGLGMATGAKRPGAKKAAAPAEAAPATEAAPAPVKGLGMATGAKRPGAKKTAAETSTAEAPAATPTAEAAPAAPVKGLGMAAGAKRPGAKKATAETGAATPAAPASPPASQAPAAAAPPAPPVKGLGMAAGAKRPGAKKTAPAAPAPPAPEATAVPSESEAPATTETSAVAEPPVKGLGIAAGARRPGAKKAALATESAPEPAQPAATASEPTEPATSAPKDEAPETGSTPEPPVKGLGIAPGARRPGRRN
>NZ_AP014547.1|WP_030142800.1|4395713_4397024_+|pyridoxal-phosphate-dependent-aminotransferase
MDSNATIETVSTDNLPIDVPPRVPGLSPRQHQRVFAQSTKLQDVLYEIRGPVHAHAARLEAEGHRILKLNIGNPAPFGFEAPDVIMRDIIQALPYAQGYSDSKGILPARRAVVTRYELVDGFPYLDVDDVFLGNGVSELITMTTQALLDNGDQVLIPAPDYPLWTAATSLAGGTAVHYLCDETNGWMPDIEDLESKITERTKALVIINPNNPTGAVYSREILTKMVELARKHQLLLLADEIYDKILYDDAEHISVASLAPDLLCFTFNGLSKAYRVAGYRSAWLAITGPKDHAASLLEGVNLLANMRLCPNVPAQHAIQVALGGHQSIEDLVLPGGRLLEQRDVAWTKLNEIPGVSCVKPQGALYAFPRLDPEVHHIHDDDQLVLDLLLNEKILLTQGTGFNWPEPDHLRIVTLPWARDLAVAIERLGNFLASYRQ

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Crispr_ID: NZ_AP014547_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014547_3

4690975-4691069

Orphan

Consensus_repeat	Method
GCCAGCCCGCTGAACCCCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014547_3

>merge|NZ_AP014547|3|4690975-4691069|CRISPRCasFinder
GCCAGCCCGCTGAACCCCAACAACCCCGCCAACCCGGCCAGCCCGCTGAACCCGAACAACCCGGCCAATCCCGCCAGCCCGCTGAACCCGAACAA

>NZ_AP014547|3|3|4690975-4691069|CRISPRCasFinder
GCCAGCCCGCTGAACCCCAACAA	CCCCGCCAACCCGGCCAGCCCGCTGAACCCGAACAACCCGGCCAATCCC
GCCAGCCCGCTGAACCCGAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014547.1\|WP_005071727.1\|4687996_4688416_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_AP014547.1\|WP_005071725.1\|4685289_4687560_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_AP014547.1\|WP_005063831.1\|4689051_4690641_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235731
NZ_AP014547.1\|WP_005101757.1\|4692955_4693804_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_AP014547.1\|WP_005063841.1\|4698597_4699014_+\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_AP014547.1\|WP_005063839.1\|4696634_4697225_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP014547.1\|WP_016343627.1\|4693808_4694669_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_AP014547.1\|WP_005138251.1\|4682766_4683603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005138254.1\|4695564_4696638_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|226326
NZ_AP014547.1\|WP_005063842.1\|4699100_4700144_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_AP014547.1\|WP_005071735.1\|4694760_4695552_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181131
NZ_AP014547.1\|WP_005071720.1\|4681573_4682695_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	unknown	unknown	gnl\|CDD\|237590
NZ_AP014547.1\|WP_005063840.1\|4697347_4698601_+\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	unknown	unknown	gnl\|CDD\|240084
NZ_AP014547.1\|WP_005138253.1\|4684283_4685177_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014547.1\|WP_005138247.1\|4680659_4681577_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|131370
NZ_AP014547.1\|WP_005103161.1\|4691131_4692229_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_AP014547.1\|WP_005071732.1\|4692280_4692946_+\|glyoxalase	unknown	unknown	gnl\|CDD\|372667
NZ_AP014547.1\|WP_005071728.1\|4688405_4689008_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP014547.1\|WP_005071722.1\|4683691_4684222_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_AP014547.1\|WP_005138245.1\|4679157_4680663_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|224990

Protein	Function_ID	Function_description	E-value
NZ_AP014547.1\|WP_005071727.1\|4687996_4688416_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.31723e-22
NZ_AP014547.1\|WP_005071725.1\|4685289_4687560_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_AP014547.1\|WP_005063831.1\|4689051_4690641_-\|AMP-binding-protein	gnl\|CDD\|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	0
NZ_AP014547.1\|WP_005101757.1\|4692955_4693804_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.65198e-41
NZ_AP014547.1\|WP_005063841.1\|4698597_4699014_+\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	4.81157e-11
NZ_AP014547.1\|WP_005063839.1\|4696634_4697225_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.72256e-07
NZ_AP014547.1\|WP_016343627.1\|4693808_4694669_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.90611e-09
NZ_AP014547.1\|WP_005138254.1\|4695564_4696638_+\|diacylglycerol-kinase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	4.32106e-115
NZ_AP014547.1\|WP_005063842.1\|4699100_4700144_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	6.54099e-114
NZ_AP014547.1\|WP_005071735.1\|4694760_4695552_+\|SDR-family-oxidoreductase	gnl\|CDD\|181131	PRK07814, PRK07814, SDR family oxidoreductase.	1.62564e-153
NZ_AP014547.1\|WP_005071720.1\|4681573_4682695_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	gnl\|CDD\|237590	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase.	0
NZ_AP014547.1\|WP_005063840.1\|4697347_4698601_+\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	gnl\|CDD\|240084	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	9.42384e-165
NZ_AP014547.1\|WP_005138247.1\|4680659_4681577_+\|methylisocitrate-lyase	gnl\|CDD\|131370	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.	1.72028e-143
NZ_AP014547.1\|WP_005103161.1\|4691131_4692229_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	2.09098e-76
NZ_AP014547.1\|WP_005071732.1\|4692280_4692946_+\|glyoxalase	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.98773e-08
NZ_AP014547.1\|WP_005071728.1\|4688405_4689008_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.85926e-07
NZ_AP014547.1\|WP_005071722.1\|4683691_4684222_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.65024e-30
NZ_AP014547.1\|WP_005138245.1\|4679157_4680663_+\|MmgE/PrpD-family-protein	gnl\|CDD\|224990	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only].	7.01114e-146

>NZ_AP014547.1|WP_005063831.1|4689051_4690641_-|AMP-binding-protein
MPDPFDPLHGSINSGHLLVSALKRNRDAPALVLGDVTLTGAQMADEISKYIQAFIELVPDPTDGQGMLALNRPEVLLVIGAGQLLGTRRTALHPLGSLDDHAYVLADAKITTLVIDPTPQFVERAAALVAKVPTLTRVLTLGPVPVELAEVGQDLVAAAAGFAARPLTPINLSPDHINGLTYTGGTTGKPKGVIGTSQSILTMTQIQLAEWEWPERPKFLMCTPLSHAGAAFFMPTLMKGGSMVVLPKFDAGAVLAAIEEHQITATMLVPSMIYALLDHPDSRTRDLSSLQTVYYGASAINPVRLAEAIERFGPIFAQYFGQSEAPMVISYLAKGDHDAKRLSSCGRPSAFLRTALLDENDRPVKQGEPGEICVAGPLVAGGYWGLPEQTAETFKNGWLRTGDVAREDEDGFWFIVDRTKDMIVTGGFNVFPREVEDVVAEHPSVAQVGVIGVPDEKWGEAVTAIVVLRSDASSDEEAVALMTSEIQSAVKERKGSVQSPKHVIVADSLPLTALGKLDKKALRQKYTTV
>NZ_AP014547.1|WP_005071728.1|4688405_4689008_+|TetR/AcrR-family-transcriptional-regulator
MGRKPQYSADDILDAALGLVAAGGPSAATATAIGRVLGAPSGSIYHRFPSRDELMARLWLRSIARYQDGVLAALALPDADDALAAAIDHAFDWTASNHNEALLLLQYEKADLVAHWPDTLATELKTLNSRVRKTLREYTDRRYGEVTTERIDKVMFALIDMPYAAVRRHLPDKGQPAPWLREFVHASAHALLARACPNKP
>NZ_AP014547.1|WP_005071727.1|4687996_4688416_+|PaaI-family-thioesterase
MITLDQAQQVLDAQPFSRLLGAAITRVDERGIQLSLQIRDELRQQSGFIHGGVLSYLADNAITYACGLGLGADIVTSGYTIEYVAPARDGARLVADASLVSAGRTKALGRCEISVEDHDGTATLVAVAQGTSMVRRSGT
>NZ_AP014547.1|WP_005071725.1|4685289_4687560_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTTQPLKATTLGSARIGPRRELKRATESYWAGRISRVELEDVAAGLRRDNWTALAAAGLDSVPVNTFSYYDQVLDTAVLLGALPPRVAGIADDLDRYFAAARGNTDVTPLEMTKWFDTNYHYLVPEIGPDTQFTLNPAKLFGELKEAQALDVPARPVVVGPITFLALSKSVDGASAPIERLDEVVALYEQLLVQLAEAGVGWVQIDEPVLVTDILPNGPELAERVYGRLGTVADRPAILVASYFGELGAALPALARTPIEAIAVDLVYGSASAVASVPELAGKTLVAGVVDGRNIWRTNLQSALGTLASLLGSAESVAVSTSCSTLHVPYSLEPETELDDQLRSWLAFADEKVKEVVVLARALGEGRDAVAAEIAASNAAAESRRTDPRLNNGQIRTRLDAVLADGVSRGDAAERRRRQDERLRLPALPTTTIGSFPQTVEIRKARQALTRGEIDDVEYVRQMRAEVADVIALQEKLGLDVLVHGEPERNDMVQYFAEQLDGFFATQNGWVQSYGSRCVRPPILYGDVARRKPMTVEWATYAQSLTQKHVKGMLTGPVTILAWSFVRDDQPLGDTANQIALAIRDETVDLQNAGIAIIQVDEPALRELLPLRNSEKQAYLDWAVGAFRLSTSGVSDATQIHTHLCYSEFGEVIGAIADLDADVTSIEAARSHMEVLDDLNAIGFSNSVGPGVYDIHSPRVPSTEEMATSLREALKAVPAQRLWVNPDCGLKTRKVDEVTSSLANLVAAAASVRADA
>NZ_AP014547.1|WP_005138253.1|4684283_4685177_-|hypothetical-protein
MSMNTVALEMVPPNVDGGLDRAADELRKLRQFSAEFGIDRRIAHVMIPSMIVEDGDRPLEMKPKLDVVDYWSIIRAELPAVRGLCTQVTSFSDETSLRGRLTDLTDAGMDGVIFVGVPRTMNDGDGAGIPPTDALSKFDDIVQNRGAILIPTRAGEQGRFSFKCDKGANFAMTQLLYSDAVVGFLHEFAHTSDHRPEVLLSFGFVPKLESKIGLIDWLIQDPGNEAVAREQDFVKALAAREPGERRPQLVDLYKRVVDGVAGLGFPLSIHFEAPYGLARPAFETFAEMLEYWSPAVS
>NZ_AP014547.1|WP_005071722.1|4683691_4684222_-|GNAT-family-N-acetyltransferase
MEPVELQTDRLMLRAVADADAAAIVDACNDPEILHYLPLPVPYTVGDARSFIAASTQEWAAGTRYGFGFFVMDTGELAGTCSLKPVTSGVLEVGYWSAAQHRRKGLTTEAVQRLCQWGFDVLDAHRIEWWAVVGNEGSRAVAEAAGFEMEGLLRQRACRRQEPADWWVGGLLPRPE
>NZ_AP014547.1|WP_005138251.1|4682766_4683603_-|hypothetical-protein
MRELINRVPVRNESLVYIGISHWEYQCCGQTPEIGQSVDWQICAYPAESGYLLASAAAVDWDEGREIIRFPYGCAGWDPALGDPAQRLVTLWATWHKGQNWPRLLGVVEELYDVSAVSYRDESDCIRCRPSSFQYRSVELATRWPEESSRGEPGRRVITGCVVGLRVISVVEPADADIQARQEERDRARRTLDLFGPPGVFGAVIPSRGDRVTVDLADPRLSVNDTRGYAGVVTGIAGQVSRAVHSPDGFYTGLLDINSEAPPPDELFIQLLCDRKPE
>NZ_AP014547.1|WP_005071720.1|4681573_4682695_+|bifunctional-2-methylcitrate-synthase/citrate-synthase
MTISTPTIHKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAVQCSFEQVAYLLWHGELPNEGELALFNQRERAQRRLDRSLMALLAKLPETCHPMDVVRTAISYLGAEDPSEDDNTPDANYAKSLRMFAVLPTIVASDMRRRRGLDPIQPHSHLGYSANFLRMCFGEIPDPAIVKAFEQSMILYAEHSFNASTFAARVVTSTQSDIYSAVTAAIGALKGSLHGGANEAVMHDMIEIGDASKASEWLQSKRSRKEKIMGFGHRVYKNGDSRVPTMRAALEDVARVRDGGQWLEIYKVLESEMDAATGIKPNLDFPTGPAYYLMGFDIPCFTPIFVMSRITGWTAHIMEQAAANALIRPLSEYSGKPQRRLAC
>NZ_AP014547.1|WP_005138247.1|4680659_4681577_+|methylisocitrate-lyase
MSTLLASATDAATKRAAFRQGLSSGELLRLPGAFSPLVAKLIEEIGFEGVYVSGAVLSADLALPDIGLTTLTEVSARGRQIASVTDLPTLIDADTGFGEPMSAARTVAVLEDSGVAGLHLEDQVNPKRCGHLDGKAVVETAEMVRRLHAAVSARRDPNFVICARTDAAGIEGLPAAIDRARAYADAGADLIFTEALTDIGEFEKFRAAVDIPLLANMTEFGKSELVTADRLREVGYNVVIYPVTTLRLAMYAVEQGLHEINSAGTQSGLLEQMQHRSRLYELLHYAEYNRFDTEIFNFSLDGGQQ
>NZ_AP014547.1|WP_005138245.1|4679157_4680663_+|MmgE/PrpD-family-protein
MHVHSVRTRRSAEAFPRDQHLAWKIAEIASDPVAVPADTAAMVINRVIDNAAVSAASVIRRPVTVARRQAQAHPAAPGAHVFGIGGGYSAEWAAWANGVAVRELDFHDTFLAADYSHPGDNIPPLVAVAQQLGIGGDDLIRGLATAYETQINLTRGICLHEHKIDHVAHLGPAVAAGLGTMLKLDTETIYQAIGQALHLTTATRQSRKGLISSWKAYAPAWAGKVAIEAVDRAMRGEGAPSPIWEGEDGVIAWLLGGPEKLYKVPLPGPGEEKRAILDSYTKEHSAEYQSQAPIDLARRMRERIGDLEQIATIVLHTSHHTHVVIGTGSNDPQKFDPDASRETLDHSVMYIFAVALEDGTWHHERSYAPERAHRPETIELWNKISTIEDPEWTRRYHSTDPDEKAFGCKAVVTLKNGEVIADELAIADAHPLGARPFARDNYVNKFTVLSDGVIAPREQERFLSVAQGLADLKPGSLGALNPLVDAVVLDKAPTTPEGIFK
>NZ_AP014547.1|WP_005103161.1|4691131_4692229_-|LLM-class-flavin-dependent-oxidoreductase
MRFQLLDIVFHLPNPATRALAPAAERLNRVIETAVLAENLGFDSFAVGERHAGDVLSSAPTVLLGAVAAATDRILLSTGVTVLSLLDPVRAAEDFATIDQLSRGRLEIVIGKGNEDRQYPLMGLDIAKQYEYLQENYELLRRLLREEHVDWVGAHRHPLADATTLPRPYDGPFRIWHGSATSTFAVELAAKWGDPIVTANALQPKENYRVLIDRYRELYAHHGHDPAQLYVGAGSGGLYLADTTEQAIAQYRPIYEARLAQMAKLKAHPQAVGKFPSFESIEDAADRGPVLAGSPERVAEKILDWHEAFGHEFQSISLSPEADFEEQKDTLRRFAEEVVPLVRAEVKSTLWGPLDTRRAKGFTAV
>NZ_AP014547.1|WP_005071732.1|4692280_4692946_+|glyoxalase
MITELDSVLLDVPNLGEAKAAYSRLFNSSAPHPQLHLGLPEWASHPGMLFRVDHLDCAARTVARRGLALTVHGDLATGASNGVTLGLSGQPPAAPQPDADSCRIDHLVLFSPNRDRIIATLCGRLGFDLRLDRLQSWGAHQLFFRGAGLVVEVVLRDDDPSGPDSLWGIAWRTADIEASHARLSGAGATLGDIRNGHKPGTRVVTVKDPALAVPTILIEQR
>NZ_AP014547.1|WP_005101757.1|4692955_4693804_+|AIM24-family-protein
MTTPNSGSWQPDPDGRYEFRWHDGQRWTDQVAHQGSVSTAPLGGAATQPAAPDQPAGNQFSGISGDLVDGRFSENEAKPISNQNAKLLRVRLGEPFLARQGSMVAYQGNVDFAFEGGGAAKFLKKALTGEGLPLMRCSGQGDVFLAERAFDVHLLNLNNAGLSISGKNVLAFSAGLNWNIERVRGASVVTGGLFNTTLRGTGWVALTTDGPPVVLNAAEAPTFADTNAVVAWSSNLQTQLKTSFKAGALIGRGSGEALQVSFQGQGFVIVQPSEGIPVVTAG
>NZ_AP014547.1|WP_016343627.1|4693808_4694669_-|helix-turn-helix-domain-containing-protein
MPASSPPTARVVRIVEMLAAAMQPKTVSEIAASTGISRATATAVVNELEAAGWVARDDELRYRIGASLPRAVDTSMPREAQQLLARIAAEAQAGVTVSCISAKALTVVAKAQAGRRAVTGFAVGQSIPLAFPAGSAVMPWRAAEEREQWLGTAAGLSARSGQRLLQQVSDCGYVVYRPDHDDTGMVDLLSDLLGSVGSEVMEAALRERLLRQLSRLTSRPYSPDELTSDEVLPISYLAAPIFDGAEARYELQLGPLLPRATRVVREALIATLMRGARELSGVLGDR
>NZ_AP014547.1|WP_005071735.1|4694760_4695552_+|SDR-family-oxidoreductase
MILDRFKLDGNVAVVTGAGRGLGAAIAEAFAQAGADVLIASRTESQLREVAEKVQAAGRQAEVVVADLSDTEASAALAQKAVDRFGRLDVVVNNVGGTMPKPFLDTTNDDLAEAFSFNVLSGHALLRAAVPHLLKSDNASVINITSTMGRLPGRAFLGYCTAKGALAHYTRTAAMDLSPRIRVNGIAPGSILTSALEVVAGNDEMRNTLEQNTPLHRLGDPDDIAAAAVYLASPAGSFLTGKVLEIDGGLIAPNLDIPLPDLA
>NZ_AP014547.1|WP_005138254.1|4695564_4696638_+|diacylglycerol-kinase
MTKTRVAVWGTGNVGQHALAGVITDPSMELVGVWVSGSNKAGKDAGALAGLDILTGITATTDAAQILALRPDCVVYTAMTDNRLMEALKDLTDLLSAGINVAASAPVFLQYPWGVLPENMLTPIENAAREGNSSIFVGGIDPGFANDLLPLALMGTCQRIDQVRCIEIVDYATYDSATVMFDVMGFGKPMEETPMLLQPGVLSLAWGSVVRQLAAGLGVELDEVTEAYEKLPAPEDFDISSGHIPAGTMAALHFEVRGIKDGRAVTVLEHFTRLREDLAPNWPQPAHEGGTYRVQITGEPSYLLDLGSFSARGDHNYANLIATAMRVVNAVPAVVAAEAGIRTTLDLPLITGKGRAV
>NZ_AP014547.1|WP_005063839.1|4696634_4697225_-|TetR/AcrR-family-transcriptional-regulator
MSARDTLIASVTGLVRRRGVAGTGLNALLEDSGVSRRTIYLNFPGGKQELVAEATRLAGNELTAIIKAAGDDVDPARGIQLFIELWKAQLAETEMQAGCPVVAAVLGRTEAPEAAAVAADAFESWRKILIDRLARYDVDGETARSLASTMIAAIEGAVIMSIAAQSTEALDDVGQRLVELVRLYVPAGAKPNPHVD
>NZ_AP014547.1|WP_005063840.1|4697347_4698601_+|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein
MPDIHDPLPLANGQVLRNRLMKSALSEALGNAEQGPDHRLVQLFSRWGAGGYGLIVTGNVMVDHNHLGEPGNVVIEDDRHLEGLSRWAKATKDGGGLIWMQVNHPGRQANPLATKHQPVAPSAVRMSVPGWQAPRELTDVEIEDIIDRYARTAVVADTAGFDGVQIHGAHGYLVAQFLSPNTNRRTDRWGGDAQRRMRFVLEIVRRTKAAVSPGFAVAIKLNSADFQRGGFTEEESRGVIAALAAEGIDLIEISGGTYESPAMEGRPVVVSTSTQAREAYFLEYATTARAVAGDVPLAVTGGFRTTAAMNEAIESGACDVIGLGRPTTVNPEAAIELLSTRRDRLTVPDAALPLPARLAATARAKAFLSAHELQWHGTQMHRLGAGSDPDPSIGPWITALRLLKNNGVEAFRKRRSS
>NZ_AP014547.1|WP_005063841.1|4698597_4699014_+|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MTDKTLRKFRRERAMGRYLLNPAVGALAKLGVRTALASELETTGRRTGQLRRVPVSVQFDSTGAWVICQHGTRSGWGSNIAANPNVRIRQGNRWRTGTAQFRPDDDVVARGRGFGVIGARVVKALETTPISVRIDFTD
>NZ_AP014547.1|WP_005063842.1|4699100_4700144_+|galactose-1-phosphate-uridylyltransferase
MADGREILYFDSTPTERAAVDRRDLPPVSTQSQIRFDPLLGDWVTLASHRQTRTFLPPTDLCPLCPSTPERPTEIPEHAYEVVAFENRFPSLSLHAQAATPPAGAGFGRCEVLCFTSEHDTSFAQLEPRRARLIVDVWAERTKELSAIDGVKQVYCFENHGEEIGVTLAHPHGQIYAYPFITAKTARVLSNVDTHRKQHGTNLFGEILAAERATGTRVVTANDEWTAFVPSFARWPYEVSLYPHRQVADIPDLDDAARSAFAELYLDVLQRFACRFDNPMPYIAGWNQAPTVASGAIRDNWWLHLQVFSIRRAPGKLKYLAGSESGMGAFISDTTPEQVAAELRDVM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014547_1	1.1\|891759\|26\|NZ_AP014547\|CRISPRCasFinder	891759-891784	26	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	418376-418401	5	0.808
NZ_AP014547_1	1.1\|891759\|26\|NZ_AP014547\|CRISPRCasFinder	891759-891784	26	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	678153-678178	5	0.808
NZ_AP014547_1	1.1\|891759\|26\|NZ_AP014547\|CRISPRCasFinder	891759-891784	26	NZ_CP029333	Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence	54049-54074	6	0.769
NZ_AP014547_1	1.1\|891759\|26\|NZ_AP014547\|CRISPRCasFinder	891759-891784	26	NC_022654	Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence	143457-143482	6	0.769
NZ_AP014547_2	2.1\|4382397\|31\|NZ_AP014547\|CRISPRCasFinder	4382397-4382427	31	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	166504-166534	6	0.806
NZ_AP014547_2	2.1\|4382397\|31\|NZ_AP014547\|CRISPRCasFinder	4382397-4382427	31	MN698244	Pelagibacter phage HTVC106P, complete genome	29757-29787	9	0.71
NZ_AP014547_2	2.1\|4382397\|31\|NZ_AP014547\|CRISPRCasFinder	4382397-4382427	31	NC_048170	Escherichia phage vB_EcoM_Goslar, complete genome	181507-181537	9	0.71

1. spacer 1.1|891759|26|NZ_AP014547|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.808

aaccccggccagggtggttggggcca	CRISPR spacer
gaccccggccagggtggtcgcggcgg	Protospacer
.*****************.* *** .

2. spacer 1.1|891759|26|NZ_AP014547|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 5, identity: 0.808

aaccccggccagggtggttggggcca	CRISPR spacer
gaccccggccagggtggtcgcggcgg	Protospacer
.*****************.* *** .

3. spacer 1.1|891759|26|NZ_AP014547|CRISPRCasFinder matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 6, identity: 0.769

aaccccggccagggtggttggggcca	CRISPR spacer
ttgcccggcgagggtggttggggcac	Protospacer
   ****** **************

4. spacer 1.1|891759|26|NZ_AP014547|CRISPRCasFinder matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 6, identity: 0.769

aaccccggccagggtggttggggcca	CRISPR spacer
ttgcccggcgagggtggttggggcac	Protospacer
   ****** **************

5. spacer 2.1|4382397|31|NZ_AP014547|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 6, identity: 0.806

gccgccaacagaacccgaaccacc-cagggca	CRISPR spacer
accgccaccagaacccaaaccaccaccaggc-	Protospacer
.****** ********.******* * .***

6. spacer 2.1|4382397|31|NZ_AP014547|CRISPRCasFinder matches to MN698244 (Pelagibacter phage HTVC106P, complete genome) position: , mismatch: 9, identity: 0.71

gccgccaacagaacccgaaccacccagggca	CRISPR spacer
accgccaccagaacctgaaccaccagcacct	Protospacer
.****** *******.******** . . *

7. spacer 2.1|4382397|31|NZ_AP014547|CRISPRCasFinder matches to NC_048170 (Escherichia phage vB_EcoM_Goslar, complete genome) position: , mismatch: 9, identity: 0.71

gccgccaacagaacccgaaccacccagggca	CRISPR spacer
accggcaacagaacctgaaccaccgctcaaa	Protospacer
.*** **********.********    . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1816266 : 1821912

Mycobacterium_phage(83.33%)

integrase

attL 1812599:1812613|attR 1820869:1820883

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1812599:1812613	attL	NA	NA	NA	NA
WP_005137005.1\|1816266_1817373_+\|integrase	site-specific integrase	A0A2P1JS61	Mycobacterium_phage	7.6e-108	55.1
WP_005137006.1\|1817369_1818143_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_005137008.1\|1818403_1818781_-	hypothetical protein	NA	NA	NA	NA
WP_005137010.1\|1818819_1819842_-	acyltransferase	A9YX16	Burkholderia_phage	1.1e-25	30.0
WP_024571065.1\|1820077_1820809_+	hypothetical protein	A0A068F4L5	Mycobacterium_phage	1.3e-60	53.4
WP_024571066.1\|1820786_1821140_-	helix-turn-helix transcriptional regulator	A0A1C9M0W4	Mycobacterium_phage	1.3e-21	49.0
1820869:1820883	attR	NA	NA	NA	NA
WP_005067362.1\|1821379_1821616_+	helix-turn-helix transcriptional regulator	A0A1C9M042	Mycobacterium_phage	6.0e-23	69.3
WP_005137013.1\|1821612_1821912_+	hypothetical protein	A0A220NS49	Mycobacterium_phage	5.9e-07	35.8

DBSCAN-SWA_2

1825504 : 1877749

Mycobacterium_phage(75.51%)

tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005067369.1\|1825504_1825822_+	hypothetical protein	A0A1J0MDS6	Mycobacterium_phage	9.7e-08	37.0
WP_005137029.1\|1825818_1826709_+	ATP-binding protein	G1BSI6	Mycobacterium_virus	1.9e-138	81.6
WP_005067371.1\|1826920_1827127_+	hypothetical protein	NA	NA	NA	NA
WP_024571068.1\|1827123_1827834_+	hypothetical protein	G1D0U2	Mycobacterium_virus	4.4e-24	33.3
WP_078061975.1\|1827974_1828592_+	site-specific DNA-methyltransferase	A0A142KC68	Gordonia_phage	4.3e-28	38.6
WP_005137034.1\|1828734_1829115_+	hypothetical protein	NA	NA	NA	NA
WP_005137037.1\|1829111_1829399_+	hypothetical protein	NA	NA	NA	NA
WP_131526252.1\|1829762_1830506_+	hypothetical protein	A0A097EYS9	Mycobacterium_phage	2.7e-48	67.9
WP_005067376.1\|1830502_1830856_+	hypothetical protein	A0A2L0HJY8	Mycobacterium_phage	1.2e-27	56.2
WP_074359886.1\|1832287_1833070_+	hypothetical protein	A0A2D1GG45	Gordonia_phage	2.2e-16	47.5
WP_032670028.1\|1833299_1833518_+	hypothetical protein	G1JX72	Mycobacterium_phage	2.1e-09	47.4
WP_005067380.1\|1833514_1833844_+	hypothetical protein	NA	NA	NA	NA
WP_024571072.1\|1834511_1834760_+	WhiB family transcriptional regulator	A0A097EWF7	Mycobacterium_phage	4.1e-14	50.0
WP_024571073.1\|1834759_1835074_+	WhiB family transcriptional regulator	A0A1B0XUI6	Freshwater_phage	5.2e-14	50.0
WP_005137042.1\|1835112_1835289_+	hypothetical protein	NA	NA	NA	NA
WP_005067383.1\|1835285_1835480_+	hypothetical protein	NA	NA	NA	NA
WP_005067385.1\|1835518_1835761_+	hypothetical protein	G1D3X4	Mycobacterium_virus	8.7e-09	51.6
WP_005137043.1\|1836082_1836364_+	hypothetical protein	G1BSK4	Mycobacterium_virus	2.2e-16	45.1
WP_005137046.1\|1836530_1837214_+	hypothetical protein	A0A2L0HK00	Mycobacterium_phage	8.4e-49	46.2
WP_005067387.1\|1837260_1838046_+	nucleotidyltransferase domain-containing protein	A0A2P1A0V3	Gordonia_phage	2.5e-73	54.5
WP_005067388.1\|1838047_1838248_+	hypothetical protein	NA	NA	NA	NA
WP_005067389.1\|1838319_1838598_+	hypothetical protein	A0A088FQJ6	Mycobacterium_phage	2.9e-16	51.2
WP_005067390.1\|1838594_1839047_+	hypothetical protein	A0A2P1JZV1	Mycobacterium_phage	4.4e-06	47.8
WP_005137049.1\|1839325_1839475_+	hypothetical protein	NA	NA	NA	NA
WP_005067391.1\|1839477_1839762_+	hypothetical protein	NA	NA	NA	NA
WP_024571076.1\|1840156_1840501_+	hypothetical protein	NA	NA	NA	NA
WP_012296468.1\|1840539_1840776_+	hypothetical protein	A0A088FBL5	Mycobacterium_phage	2.6e-05	92.3
WP_005067393.1\|1841295_1841667_+	hypothetical protein	A0A2D1GAQ7	Mycobacterium_phage	1.5e-07	34.6
WP_005137054.1\|1841957_1842239_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_005067396.1\|1842368_1843631_+	glycosyltransferase	G8I6V8	Mycobacterium_virus	2.2e-66	70.3
WP_005067397.1\|1843637_1844459_+	hypothetical protein	A0A2D1GAR3	Mycobacterium_phage	1.3e-83	56.2
WP_024571077.1\|1844455_1845151_+	hypothetical protein	A0A0A1ENE4	Mycobacterium_phage	1.0e-89	71.7
WP_005067399.1\|1845150_1845396_+	hypothetical protein	NA	NA	NA	NA
WP_005067400.1\|1845395_1845812_+	hypothetical protein	A0A068F2M6	Mycobacterium_phage	1.4e-22	49.6
WP_024571079.1\|1846749_1847034_+	hypothetical protein	NA	NA	NA	NA
WP_024571080.1\|1847017_1847365_+	HNH endonuclease	G1BSJ4	Mycobacterium_virus	9.9e-06	42.4
WP_131526253.1\|1847533_1848145_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	4.7e-11	32.4
WP_024571082.1\|1848145_1849798_+	hypothetical protein	A0A0S1S0L0	Mycobacterium_phage	5.3e-198	59.2
WP_024571083.1\|1849816_1851181_+\|portal	phage portal protein	A0A1C9LZY2	Mycobacterium_phage	2.7e-171	67.4
WP_024571084.1\|1851231_1851852_+	hypothetical protein	A0A088FVU5	Mycobacterium_phage	4.1e-26	46.1
WP_005067409.1\|1851867_1852698_+	hypothetical protein	A0A0A0RSP1	Mycobacterium_phage	4.5e-81	58.7
WP_005137062.1\|1852697_1853270_+	hypothetical protein	A0A1C9M013	Mycobacterium_phage	2.9e-42	51.1
WP_005110307.1\|1853368_1853602_+	hypothetical protein	G8I4C3	Mycobacterium_phage	8.9e-11	40.0
WP_024571085.1\|1853601_1853868_+	hypothetical protein	A0A068F3C1	Mycobacterium_phage	4.0e-15	51.2
WP_005067416.1\|1853867_1854245_+	hypothetical protein	NA	NA	NA	NA
WP_005067417.1\|1854311_1854899_+	hypothetical protein	A0A068F8K4	Mycobacterium_phage	1.6e-69	67.2
WP_005137063.1\|1854993_1855260_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	3.8e-13	43.5
WP_005067420.1\|1855376_1855688_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	4.0e-14	43.7
WP_005137064.1\|1855698_1859712_+\|tail	phage tail tape measure protein	A0A068F1L4	Mycobacterium_phage	1.5e-275	54.5
WP_024571086.1\|1859715_1860825_+	hypothetical protein	A0A068F3C3	Mycobacterium_phage	4.9e-155	67.9
WP_005067424.1\|1860827_1862624_+	hypothetical protein	A0A068F4H3	Mycobacterium_phage	3.1e-236	63.2
WP_005067425.1\|1862719_1863157_+	hypothetical protein	A0A068F2D2	Mycobacterium_phage	1.7e-34	51.8
WP_005067426.1\|1863149_1864235_+	hypothetical protein	A0A068F8L3	Mycobacterium_phage	1.4e-151	67.8
WP_005067428.1\|1864234_1868350_+	serine hydrolase	A0A0K1LLJ4	Mycobacterium_phage	2.3e-149	40.3
WP_005137067.1\|1868360_1868759_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	5.6e-29	48.9
WP_005137068.1\|1869019_1870159_+	hypothetical protein	G3MDN1	Mycobacterium_phage	4.5e-31	46.3
WP_005067432.1\|1870174_1870606_+	hypothetical protein	A0A2P1JR64	Mycobacterium_phage	2.1e-58	80.4
WP_005137072.1\|1870862_1872308_+	M15 family metallopeptidase	A0A2P1CEK6	Mycobacterium_phage	6.3e-163	63.3
WP_005067435.1\|1872310_1872751_+	hypothetical protein	NA	NA	NA	NA
WP_005067437.1\|1872801_1873716_+	cutinase family protein	A0A2D1GJ74	Mycobacterium_phage	6.5e-89	54.3
WP_005067438.1\|1874066_1875194_+	hypothetical protein	S5W0N6	Mycobacterium_phage	1.7e-118	57.8
WP_005137074.1\|1875219_1875519_+	hypothetical protein	A0A222ZPK3	Mycobacterium_phage	5.3e-08	41.1
WP_005067440.1\|1875554_1875917_+	hypothetical protein	A0A222ZMV8	Mycobacterium_phage	7.1e-23	53.8
WP_131526254.1\|1875955_1876240_+	hypothetical protein	NA	NA	NA	NA
WP_005067441.1\|1876318_1876558_-	hypothetical protein	NA	NA	NA	NA
WP_005067442.1\|1876573_1877749_-	hypothetical protein	G8I4U5	Mycobacterium_phage	1.5e-34	47.3

DBSCAN-SWA_3

2545792 : 2562528

Leptospira_phage(100.0%)

integrase,transposase

attL 2550838:2550855|attR 2559439:2559456

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005068399.1\|2545792_2547844_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_024571248.1\|2547840_2548596_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_005068404.1\|2549189_2550311_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.3e-11	21.0
WP_024571249.1\|2550303_2550669_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
2550838:2550855	attL	NA	NA	NA	NA
WP_005068407.1\|2552101_2552260_+	hypothetical protein	NA	NA	NA	NA
WP_005137354.1\|2554718_2555492_-	TniQ family protein	NA	NA	NA	NA
WP_005068412.1\|2555557_2556607_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_005093426.1\|2556594_2558667_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_076984159.1\|2558663_2559311_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_005068419.1\|2559662_2560889_+	hypothetical protein	NA	NA	NA	NA
2559439:2559456	attR	NA	NA	NA	NA
WP_005068421.1\|2560965_2561190_-	hypothetical protein	NA	NA	NA	NA
WP_005068424.1\|2561265_2562528_+\|transposase	IS256 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2850204 : 2858742

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005068898.1\|2850204_2850876_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
WP_005057567.1\|2850989_2851913_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
WP_005068900.1\|2851914_2852784_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.5e-55	46.0
WP_005068903.1\|2852885_2855252_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
WP_005068905.1\|2855282_2855816_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.1e-14	36.4
WP_005137446.1\|2855812_2857489_-	hypothetical protein	NA	NA	NA	NA
WP_005068908.1\|2857488_2858742_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_5

3962816 : 3974346

Mycobacterium_phage(58.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005061616.1\|3962816_3963647_-	NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.7e-07	29.1
WP_005061618.1\|3963774_3964065_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005070857.1\|3964185_3964377_+	hypothetical protein	NA	NA	NA	NA
WP_024571015.1\|3964373_3965141_+	phage antirepressor KilAC domain-containing protein	A0A142K8T5	Gordonia_phage	2.0e-54	50.8
WP_005137913.1\|3965243_3965630_+	hypothetical protein	NA	NA	NA	NA
WP_005070861.1\|3965626_3965947_+	hypothetical protein	NA	NA	NA	NA
WP_005070862.1\|3965946_3966234_+	hypothetical protein	NA	NA	NA	NA
WP_005070869.1\|3966433_3967327_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A2D1G8R5	Mycobacterium_phage	3.3e-77	50.3
WP_005070871.1\|3967323_3968445_+	hypothetical protein	A0A2P1CGD3	Mycobacterium_phage	3.2e-98	69.5
WP_005070872.1\|3968447_3968789_+	hypothetical protein	G8I4S2	Mycobacterium_phage	5.3e-36	69.0
WP_005070873.1\|3968816_3969653_+	DUF2303 family protein	G8I4S3	Mycobacterium_phage	1.2e-105	66.2
WP_005070874.1\|3969680_3970214_+	hypothetical protein	A0A0F6WF12	Mycobacterium_phage	5.9e-42	53.3
WP_005070875.1\|3970210_3970627_+	hypothetical protein	NA	NA	NA	NA
WP_005070877.1\|3970623_3971148_+	hypothetical protein	A0A1J0MDV9	Mycobacterium_phage	5.3e-11	31.4
WP_005070879.1\|3971144_3972164_+	site-specific DNA-methyltransferase	A0A166YCK5	Gordonia_phage	6.1e-120	61.4
WP_076984167.1\|3972160_3972364_+	hypothetical protein	NA	NA	NA	NA
WP_005061662.1\|3972491_3972941_+	hypothetical protein	Q6JIG5	Burkholderia_virus	3.2e-41	61.9
WP_024571018.1\|3972940_3973384_+	hypothetical protein	A0A142UM78	Mycobacterium_phage	2.2e-50	69.3
WP_005070883.1\|3973434_3974346_+	hypothetical protein	A0A1B3B1T0	Gordonia_phage	2.9e-41	63.5

DBSCAN-SWA_6

3981302 : 4007923

Mycobacterium_phage(91.3%)

terminase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024571023.1\|3981302_3981704_+	hypothetical protein	G3M5G1	Mycobacterium_phage	3.4e-34	59.7
WP_005070902.1\|3981700_3982036_+	hypothetical protein	A0A088F7V7	Mycobacterium_phage	1.7e-15	52.0
WP_005137920.1\|3982516_3982909_+	hypothetical protein	A0A1D8EX45	Mycobacterium_phage	5.1e-51	75.0
WP_005070908.1\|3982905_3983358_+	AAA family ATPase	A0A1D8EX78	Mycobacterium_phage	2.2e-53	66.7
WP_024571024.1\|3983518_3983920_+	hypothetical protein	A0A023ZWK1	Mycobacterium_phage	1.8e-06	33.0
WP_005070911.1\|3984068_3985481_+\|terminase	terminase	R4TCB6	Mycobacterium_phage	3.7e-152	57.2
WP_005070913.1\|3985495_3986944_+	hypothetical protein	A0A249XTF7	Mycobacterium_phage	1.1e-167	71.2
WP_005137921.1\|3986937_3988191_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1B3AZ47	Gordonia_phage	3.2e-86	51.0
WP_005070916.1\|3988194_3988572_+	hypothetical protein	W8EH90	Mycobacterium_phage	6.2e-46	82.4
WP_005070919.1\|3988588_3989500_+	hypothetical protein	A0A2K9VEV5	Mycobacterium_phage	1.2e-138	81.1
WP_005070921.1\|3989499_3989949_+	hypothetical protein	NA	NA	NA	NA
WP_005070923.1\|3989953_3990316_+	hypothetical protein	A0A218M9J6	Mycobacterium_phage	3.2e-31	58.3
WP_005070925.1\|3990315_3990723_+	hypothetical protein	NA	NA	NA	NA
WP_005070927.1\|3990722_3991082_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_005070930.1\|3991081_3991492_+	hypothetical protein	NA	NA	NA	NA
WP_005070932.1\|3991582_3992662_+	hypothetical protein	G1JTF7	Mycobacterium_virus	9.2e-58	44.1
WP_005061733.1\|3992761_3993208_+	hypothetical protein	A0A0A7RVK9	Mycobacterium_phage	1.3e-26	43.0
WP_005070934.1\|3993269_3993632_+	hypothetical protein	A0A2P1JR40	Mycobacterium_phage	1.7e-29	62.6
WP_005070937.1\|3993646_3997273_+\|tail	phage tail tape measure protein	A0A0B5H802	Mycobacterium_phage	3.7e-204	43.3
WP_005070939.1\|3997269_3999000_+	hypothetical protein	A0A1I9SC71	Mycobacterium_phage	8.8e-204	59.3
WP_005061742.1\|3999043_4000747_+	hypothetical protein	A0A097EYM8	Mycobacterium_phage	3.5e-269	77.8
WP_005070944.1\|4000762_4001602_+	hypothetical protein	A0A142K812	Mycobacterium_phage	1.6e-81	53.9
WP_005070948.1\|4001598_4004046_+	hypothetical protein	A0A2P1JZR8	Mycobacterium_phage	2.8e-46	29.8
WP_005070951.1\|4004129_4005101_+	hypothetical protein	A0A059VL91	Mycobacterium_phage	7.0e-25	55.0
WP_005070954.1\|4005123_4005579_+	hypothetical protein	NA	NA	NA	NA
WP_005070956.1\|4005598_4005961_+	hypothetical protein	A0A1C9EGR9	Mycobacterium_phage	1.8e-50	82.4
WP_005070959.1\|4005963_4006107_+	hypothetical protein	NA	NA	NA	NA
WP_005070960.1\|4006103_4006751_+	M15 family metallopeptidase	A0A0K1LIU2	Mycobacterium_phage	6.0e-97	76.3
WP_005070962.1\|4006747_4007923_+	hypothetical protein	A0A1X9SFG9	Mycobacterium_phage	2.8e-124	70.3

DBSCAN-SWA_7

4182526 : 4192025

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005071256.1\|4182526_4183651_-	acyltransferase	A9YX16	Burkholderia_phage	2.7e-20	28.7
WP_005071257.1\|4183647_4184916_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_005062157.1\|4184965_4185766_-	class I SAM-dependent methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_005071258.1\|4185982_4186717_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.0e-12	30.2
WP_005138044.1\|4186907_4188041_-	acyltransferase	A9YX16	Burkholderia_phage	7.0e-16	26.2
WP_005062162.1\|4188208_4189270_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	1.6e-17	25.8
WP_005138046.1\|4189433_4190693_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	2.1e-05	39.2
WP_005062166.1\|4191158_4192025_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	2.8e-89	57.5

DBSCAN-SWA_8

4884370 : 4892745

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005072016.1\|4884370_4885843_+	serine hydrolase	A0A1J0GRK9	Mycobacterium_phage	4.2e-13	28.8
WP_005082750.1\|4885970_4886783_+	DUF1906 domain-containing protein	A0A2D1GEF2	Gordonia_phage	3.1e-50	49.1
WP_005138308.1\|4886831_4888028_-	LysM peptidoglycan-binding domain-containing protein	A0A1W6JL93	Lactococcus_phage	2.6e-05	47.3
WP_005072022.1\|4888457_4889276_+	N-acetylmuramoyl-L-alanine amidase	A0A2D1GEV9	Mycobacterium_phage	3.3e-68	55.0
WP_005100873.1\|4890066_4890516_+	hypothetical protein	NA	NA	NA	NA
WP_005072025.1\|4890536_4891988_+	HAMP domain-containing histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	2.9e-06	33.6
WP_005064635.1\|4892067_4892745_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-26	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection