CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016357	Salmonella enterica subsp. enterica serovar Newport str. WA_14882 chromosome, complete genome	2 crisprs	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas14j,DinG,c2c9_V-U4	0	28	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016357_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016357_1

941222-942408

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

19 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP016357_1

>merge|NZ_CP016357|1|941222-942408|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAACGCCAGTGGCATGGTACAACCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGACCATGTTTAACTCTAAATCAGGCCGTGTGTTCCCAGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGTTTTGTCACCTCAACGGTCGGGAGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCCCGCGTTTCTCGGCTCGGCGCAATATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGTGCAACGCCGGTGATTTTACCAGTATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016357|1|1|941222-942408|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016357|1|1|941222-942407|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCG
TGTGTTCCCCGCGCCAACAAGGATAGCCG

>NZ_CP016357|1|1|941344-942347|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGTGCAACGCCGGTGATTTTACCAGTATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016357.1\|WP_000036734.1\|938819_940118_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP016357.1\|WP_000210923.1\|944176_945976_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP016357.1\|WP_001670772.1\|948710_949664_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP016357.1\|WP_000935104.1\|954656_955259_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP016357.1\|WP_000080403.1\|947763_948498_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016357.1\|WP_000981807.1\|932097_934797_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP016357.1\|WP_001670238.1\|955281_956340_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP016357.1\|WP_023165517.1\|930300_930771_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP016357.1\|WP_001208002.1\|942505_943303_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP016357.1\|WP_000210451.1\|936071_936872_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP016357.1\|WP_001044459.1\|931311_932085_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP016357.1\|WP_000178270.1\|930785_931292_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP016357.1\|WP_000842512.1\|934876_935464_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP016357.1\|WP_000366318.1\|953104_954640_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP016357.1\|WP_000192070.1\|950047_952747_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP016357.1\|WP_001290654.1\|945975_947688_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP016357.1\|WP_001079642.1\|929767_930304_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP016357.1\|WP_000210859.1\|937099_938737_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP016357.1\|WP_000108313.1\|943390_943753_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP016357.1\|WP_001199961.1\|940253_940925_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126

Protein	Function_ID	Function_description	E-value
NZ_CP016357.1\|WP_000036734.1\|938819_940118_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP016357.1\|WP_000210923.1\|944176_945976_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP016357.1\|WP_001670772.1\|948710_949664_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP016357.1\|WP_000935104.1\|954656_955259_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP016357.1\|WP_000080403.1\|947763_948498_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP016357.1\|WP_000981807.1\|932097_934797_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP016357.1\|WP_001670238.1\|955281_956340_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP016357.1\|WP_023165517.1\|930300_930771_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	6.02217e-99
NZ_CP016357.1\|WP_001208002.1\|942505_943303_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP016357.1\|WP_000210451.1\|936071_936872_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP016357.1\|WP_001044459.1\|931311_932085_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP016357.1\|WP_000178270.1\|930785_931292_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP016357.1\|WP_000842512.1\|934876_935464_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP016357.1\|WP_000366318.1\|953104_954640_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP016357.1\|WP_000192070.1\|950047_952747_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.74536e-141
NZ_CP016357.1\|WP_001290654.1\|945975_947688_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP016357.1\|WP_001079642.1\|929767_930304_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
NZ_CP016357.1\|WP_000210859.1\|937099_938737_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP016357.1\|WP_000108313.1\|943390_943753_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP016357.1\|WP_001199961.1\|940253_940925_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155

>NZ_CP016357.1|WP_001199961.1|940253_940925_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP016357.1|WP_000036734.1|938819_940118_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP016357.1|WP_000210859.1|937099_938737_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP016357.1|WP_000210451.1|936071_936872_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP016357.1|WP_000842512.1|934876_935464_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP016357.1|WP_000981807.1|932097_934797_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP016357.1|WP_001044459.1|931311_932085_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP016357.1|WP_000178270.1|930785_931292_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP016357.1|WP_023165517.1|930300_930771_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPAYTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP016357.1|WP_001079642.1|929767_930304_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP016357.1|WP_001208002.1|942505_943303_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP016357.1|WP_000108313.1|943390_943753_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP016357.1|WP_000210923.1|944176_945976_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP016357.1|WP_001290654.1|945975_947688_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP016357.1|WP_000080403.1|947763_948498_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016357.1|WP_001670772.1|948710_949664_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016357.1|WP_000192070.1|950047_952747_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLTSHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLIVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDINGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NZ_CP016357.1|WP_000366318.1|953104_954640_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP016357.1|WP_000935104.1|954656_955259_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP016357.1|WP_001670238.1|955281_956340_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ

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Crispr_ID: NZ_CP016357_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016357_2

959077-960630

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

25 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP016357_2

>merge|NZ_CP016357|2|959077-960630|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGAACGGCAGTATTTAAAAGGGGTTATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGCGCCCGGATTGTTTGCGTGCGGCGACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATTTACCCGCCACTTATTCCCCATTGCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGGACTATCAAACCATCTATGATGCCAATTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGGGCTGGTATTCGATACAGACCCGGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAAAAATGAATTTGAGTCAACTCTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTATCCCGGAAATCGTGATCAACTACGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTTATTGCGGTAACGGATAATTTATCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGATCGCATTTGGGTGCGGGAAACATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAATATGGTGATAATGTTGCACCTTCGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTCGGCCTGTTTTTTGATTTTGACAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGAAAATCAGCCCGCATATTCCGACACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGGTTTTAGGTTGTCGGTGCTGATCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAAACAACAGGATTTTGCAATTACTGTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGGCAGCAGCGTGAAACACGTCAGTATTGTGTTCCCCGCGCCAGCGGGGATAAACCACCAATAACCGAAATATCCACGGTGGAAATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTGTTCCATACTCACCCCCTGTGCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTATGCCGCGACGATCGAGAGCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016357|2|2|959077-960629|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATC	GGGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	ACCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACA

>NZ_CP016357|2|2|959077-960630|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016357|2|2|959077-960630|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016357.1\|WP_001219244.1\|966495_966975_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP016357.1\|WP_001173663.1\|964285_964891_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP016357.1\|WP_001221538.1\|968001_968763_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP016357.1\|WP_001670238.1\|955281_956340_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP016357.1\|WP_000490481.1\|960644_961691_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP016357.1\|WP_000935104.1\|954656_955259_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP016357.1\|WP_000080403.1\|947763_948498_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016357.1\|WP_000134243.1\|966971_968021_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP016357.1\|WP_001537530.1\|964941_965265_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP016357.1\|WP_000372384.1\|961941_962850_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP016357.1\|WP_000118676.1\|957778_958696_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP016357.1\|WP_001092268.1\|962859_964299_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP016357.1\|WP_000517480.1\|965455_965767_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP016357.1\|WP_000192070.1\|950047_952747_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP016357.1\|WP_000062285.1\|958698_958992_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP016357.1\|WP_000741641.1\|965785_966496_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP016357.1\|WP_000366318.1\|953104_954640_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP016357.1\|WP_000666422.1\|956349_957075_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP016357.1\|WP_000281416.1\|957074_957779_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP016357.1\|WP_001670772.1\|948710_949664_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP016357.1\|WP_001219244.1\|966495_966975_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP016357.1\|WP_001173663.1\|964285_964891_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP016357.1\|WP_001221538.1\|968001_968763_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP016357.1\|WP_001670238.1\|955281_956340_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP016357.1\|WP_000490481.1\|960644_961691_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP016357.1\|WP_000935104.1\|954656_955259_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP016357.1\|WP_000080403.1\|947763_948498_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP016357.1\|WP_000134243.1\|966971_968021_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP016357.1\|WP_001537530.1\|964941_965265_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP016357.1\|WP_000372384.1\|961941_962850_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP016357.1\|WP_000118676.1\|957778_958696_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
NZ_CP016357.1\|WP_001092268.1\|962859_964299_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP016357.1\|WP_000517480.1\|965455_965767_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP016357.1\|WP_000192070.1\|950047_952747_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.74536e-141
NZ_CP016357.1\|WP_000062285.1\|958698_958992_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
NZ_CP016357.1\|WP_000741641.1\|965785_966496_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
NZ_CP016357.1\|WP_000366318.1\|953104_954640_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP016357.1\|WP_000666422.1\|956349_957075_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NZ_CP016357.1\|WP_000281416.1\|957074_957779_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
NZ_CP016357.1\|WP_001670772.1\|948710_949664_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP016357.1|WP_000062285.1|958698_958992_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP016357.1|WP_000118676.1|957778_958696_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NZ_CP016357.1|WP_000281416.1|957074_957779_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP016357.1|WP_000666422.1|956349_957075_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP016357.1|WP_001670238.1|955281_956340_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP016357.1|WP_000935104.1|954656_955259_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP016357.1|WP_000366318.1|953104_954640_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP016357.1|WP_000192070.1|950047_952747_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLTSHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLIVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDINGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NZ_CP016357.1|WP_001670772.1|948710_949664_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016357.1|WP_000080403.1|947763_948498_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016357.1|WP_000490481.1|960644_961691_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP016357.1|WP_000372384.1|961941_962850_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP016357.1|WP_001092268.1|962859_964299_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP016357.1|WP_001173663.1|964285_964891_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP016357.1|WP_001537530.1|964941_965265_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP016357.1|WP_000517480.1|965455_965767_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP016357.1|WP_000741641.1|965785_966496_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP016357.1|WP_001219244.1|966495_966975_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP016357.1|WP_000134243.1|966971_968021_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP016357.1|WP_001221538.1|968001_968763_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016357_2	2.25\|960569\|33\|NZ_CP016357\|PILER-CR	960569-960601	33	NC_004313	Salmonella phage ST64B, complete genome	31960-31992	1	0.97
NZ_CP016357_2	2.25\|960569\|33\|NZ_CP016357\|PILER-CR	960569-960601	33	KU927493	Salmonella phage 118970_sal3, complete genome	69572-69604	1	0.97
NZ_CP016357_2	2.25\|960569\|33\|NZ_CP016357\|PILER-CR	960569-960601	33	AY055382	Salmonella typhimurium phage ST64B complete sequence	31960-31992	1	0.97
NZ_CP016357_2	2.50\|960570\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960570-960601	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NZ_CP016357_2	2.50\|960570\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960570-960601	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NZ_CP016357_2	2.50\|960570\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960570-960601	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90793-90823	4	0.871
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112082	4	0.871
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225001	4	0.871
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57601-57632	5	0.844
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271401-271431	5	0.839
NZ_CP016357_2	2.35\|959655\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959655-959686	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NZ_CP016357_1	1.11\|941861\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941861-941892	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53397-53428	6	0.812
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52151-52182	6	0.812
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
NZ_CP016357_2	2.10\|959654\|33\|NZ_CP016357\|PILER-CR	959654-959686	33	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10363	6	0.818
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP016357_2	2.35\|959655\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959655-959686	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NZ_CP016357_1	1.2\|941312\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	941312-941343	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	MG592417	Vibrio phage 1.033.O._10N.222.49.B8, partial genome	52046-52077	7	0.781
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052296-2052326	7	0.774
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343728-343758	7	0.774
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NZ_CP016357_2	2.6\|959410\|33\|NZ_CP016357\|PILER-CR	959410-959442	33	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30993	7	0.788
NZ_CP016357_2	2.10\|959654\|33\|NZ_CP016357\|PILER-CR	959654-959686	33	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5483	7	0.788
NZ_CP016357_2	2.20\|960264\|33\|NZ_CP016357\|PILER-CR	960264-960296	33	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304163-304195	7	0.788
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP016357_2	2.45\|960265\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960265-960296	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NZ_CP016357_2	2.45\|960265\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960265-960296	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NZ_CP016357_1	1.8\|941678\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941678-941709	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	KC206276	Escherichia phage EC1-UPM, complete genome	16171-16202	8	0.75
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NZ_CP016357_1	1.15\|942105\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942105-942136	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NZ_CP016357_1	1.16\|942166\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942166-942197	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NZ_CP016357_1	1.19\|942348\|32\|NZ_CP016357\|CRISPRCasFinder	942348-942379	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
NZ_CP016357_1	1.20\|942348\|31\|NZ_CP016357\|CRT	942348-942378	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654432	8	0.742
NZ_CP016357_2	2.5\|959349\|33\|NZ_CP016357\|PILER-CR	959349-959381	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888442	8	0.758
NZ_CP016357_2	2.5\|959349\|33\|NZ_CP016357\|PILER-CR	959349-959381	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888440	8	0.758
NZ_CP016357_2	2.6\|959410\|33\|NZ_CP016357\|PILER-CR	959410-959442	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294662	8	0.758
NZ_CP016357_2	2.20\|960264\|33\|NZ_CP016357\|PILER-CR	960264-960296	33	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194538	8	0.758
NZ_CP016357_2	2.45\|960265\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960265-960296	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NZ_CP016357_2	2.45\|960265\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960265-960296	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NZ_CP016357_1	1.11\|941861\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941861-941892	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NZ_CP016357_1	1.11\|941861\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941861-941892	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NZ_CP016357_1	1.11\|941861\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941861-941892	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3375065-3375096	9	0.719
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
NZ_CP016357_2	2.2\|959166\|33\|NZ_CP016357\|PILER-CR	959166-959198	33	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616355	9	0.727
NZ_CP016357_2	2.20\|960264\|33\|NZ_CP016357\|PILER-CR	960264-960296	33	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756037-1756069	9	0.727
NZ_CP016357_2	2.20\|960264\|33\|NZ_CP016357\|PILER-CR	960264-960296	33	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879042	9	0.727
NZ_CP016357_2	2.26\|959106\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959106-959137	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NZ_CP016357_2	2.27\|959167\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959167-959198	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NZ_CP016357_2	2.27\|959167\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959167-959198	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NZ_CP016357_2	2.27\|959167\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959167-959198	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NZ_CP016357_2	2.27\|959167\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959167-959198	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP016357_2	2.31\|959411\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959411-959442	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP016357_2	2.37\|959777\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959777-959808	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP016357_2	2.43\|960143\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960143-960174	32	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	90958-90989	9	0.719
NZ_CP016357_2	2.50\|960570\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960570-960601	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NZ_CP016357_1	1.6\|941556\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941556-941587	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
NZ_CP016357_1	1.13\|941983\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	941983-942014	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	429215-429246	10	0.688
NZ_CP016357_1	1.16\|942166\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942166-942197	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NZ_CP016357_1	1.17\|942227\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942227-942258	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NZ_CP016357_1	1.17\|942227\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942227-942258	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NZ_CP016357_1	1.17\|942227\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942227-942258	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NZ_CP016357_1	1.17\|942227\|32\|NZ_CP016357\|CRISPRCasFinder,CRT,PILER-CR	942227-942258	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NZ_CP016357_1	1.18\|942288\|31\|NZ_CP016357\|CRISPRCasFinder,CRT	942288-942318	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NZ_CP016357_1	1.21\|942288\|32\|NZ_CP016357\|PILER-CR	942288-942319	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NZ_CP016357_2	2.2\|959166\|33\|NZ_CP016357\|PILER-CR	959166-959198	33	NC_024369	Vibrio phage X29, complete genome	16391-16423	10	0.697
NZ_CP016357_2	2.2\|959166\|33\|NZ_CP016357\|PILER-CR	959166-959198	33	MK575466	Vibrio phage Rostov 7, complete genome	37606-37638	10	0.697
NZ_CP016357_2	2.2\|959166\|33\|NZ_CP016357\|PILER-CR	959166-959198	33	KJ545483	Vibrio phage phi 2, complete genome	16391-16423	10	0.697
NZ_CP016357_2	2.30\|959350\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959350-959381	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP016357_2	2.30\|959350\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959350-959381	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP016357_2	2.36\|959716\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	959716-959747	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP016357_2	2.45\|960265\|32\|NZ_CP016357\|CRISPRCasFinder,CRT	960265-960296	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688

1. spacer 2.25|960569|33|NZ_CP016357|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

2. spacer 2.25|960569|33|NZ_CP016357|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

3. spacer 2.25|960569|33|NZ_CP016357|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

4. spacer 2.50|960570|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

5. spacer 2.50|960570|32|NZ_CP016357|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

6. spacer 2.50|960570|32|NZ_CP016357|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

7. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

8. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

9. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

10. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 5, identity: 0.844

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
tcttcccccgtttctcggctcggcgcaatatc	Protospacer
  . *** ************************

11. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

12. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

13. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

14. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgc	Protospacer
 .**************.* ****** *****

15. spacer 2.35|959655|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

16. spacer 1.11|941861|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

17. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 6, identity: 0.812

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
tcttgcctcgtttctcggctcggcgcaatatc	Protospacer
  .  ** ************************

18. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 6, identity: 0.812

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
tcttcccccgtttctcggctcggcgcagtatc	Protospacer
  . *** *******************.****

19. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

20. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

21. spacer 2.10|959654|33|NZ_CP016357|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 6, identity: 0.818

gcctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
accaggcgatcgcatctgggtgcgggaggcctt	Protospacer
.** ***********.***********..* **

22. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

23. spacer 2.35|959655|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

24. spacer 1.2|941312|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

25. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MG592417 (Vibrio phage 1.033.O._10N.222.49.B8, partial genome) position: , mismatch: 7, identity: 0.781

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
tcttgccccgtttctcggctcggcgcagtatc	Protospacer
  .  ** *******************.****

26. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

27. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

28. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

29. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

30. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

31. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

32. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

33. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggccc	Protospacer
 ** ******* ************ . ***

34. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagt	Protospacer
********* ********** *.**  *  *

35. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

36. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

37. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

38. spacer 2.6|959410|33|NZ_CP016357|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 7, identity: 0.788

gggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
tataataaaaaagtatttgagtcaactgatata-	Protospacer
 . ******** * *************  ****

39. spacer 2.10|959654|33|NZ_CP016357|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 7, identity: 0.788

gcctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
cgtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
  ..***********.******** *******

40. spacer 2.20|960264|33|NZ_CP016357|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.788

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
ggcgatgtatgccgcgacgattgaatccacgct	Protospacer
*********************.**.  *. .**

41. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

42. spacer 2.45|960265|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gcgatgtatgccgcgacgattgaatccacgct	Protospacer
********************.**.  *. .**

43. spacer 2.45|960265|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
accattcatgccgcgacgaacaagagcgaaca	Protospacer
.* ** .************ *.*********

44. spacer 1.8|941678|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

45. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to KC206276 (Escherichia phage EC1-UPM, complete genome) position: , mismatch: 8, identity: 0.75

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
ttagacagcgtttctcggctaggagcaatagc	Protospacer
   * * ************* ** ****** *

46. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

47. spacer 1.15|942105|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

48. spacer 1.16|942166|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

49. spacer 1.19|942348|32|NZ_CP016357|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

50. spacer 1.20|942348|31|NZ_CP016357|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.742

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctggcggtcgcttcctcggcgc	Protospacer
 ** **************** *** . **

51. spacer 2.5|959349|33|NZ_CP016357|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

52. spacer 2.5|959349|33|NZ_CP016357|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

53. spacer 2.6|959410|33|NZ_CP016357|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.758

gggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttgtataaaaatgaatttgaggtaactccctac	Protospacer
  * ***************** .*****. **

54. spacer 2.20|960264|33|NZ_CP016357|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.758

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
caccattcatgccgcgacgaacaagagcgaaca	Protospacer
 .* ** .************ *.*********

55. spacer 2.45|960265|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

56. spacer 2.45|960265|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

57. spacer 1.11|941861|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

58. spacer 1.11|941861|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

59. spacer 1.11|941861|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

60. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
cacgcccgagcttctcggctcggcgcggggtg	Protospacer
 .****** *.***************.. .*

61. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

62. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

63. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

64. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

65. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

66. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

67. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

68. spacer 2.2|959166|33|NZ_CP016357|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.727

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
gccattggtcggattgtttgcgtgcggggccgg	Protospacer
*. . .* .****************** * ***

69. spacer 2.20|960264|33|NZ_CP016357|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

70. spacer 2.20|960264|33|NZ_CP016357|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

71. spacer 2.26|959106|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaacggcagtatttaaaaggggttattga	CRISPR spacer
cgtaaacggcagtaattaaaagcggtttgcaa	Protospacer
*  .********** ******* ****  ..*

72. spacer 2.27|959167|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
ccattggtcggattgtttgcgtgcggggccgg	Protospacer
. . .* .****************** * ***

73. spacer 2.27|959167|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

74. spacer 2.27|959167|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

75. spacer 2.27|959167|32|NZ_CP016357|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

76. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

77. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

78. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

79. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

80. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

81. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

82. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

83. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

84. spacer 2.31|959411|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

85. spacer 2.37|959777|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

86. spacer 2.43|960143|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccaataaccgaaatatccacggtggaaatttc	CRISPR spacer
ctttttacaggaatatccacggtggaaatagt	Protospacer
*.  * ** *.******************  .

87. spacer 2.50|960570|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.*********

88. spacer 1.6|941556|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

89. spacer 1.13|941983|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgcccgcgtttctcggctcggcgcaatatc	CRISPR spacer
ggcgcccgcgttactcgcctcgggatcgtcaa	Protospacer
************ **** ***** .. .*

90. spacer 1.16|942166|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

91. spacer 1.17|942227|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

92. spacer 1.17|942227|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

93. spacer 1.17|942227|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

94. spacer 1.17|942227|32|NZ_CP016357|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

95. spacer 1.18|942288|31|NZ_CP016357|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

96. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

97. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

98. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

99. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

100. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

101. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

102. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

103. spacer 1.21|942288|32|NZ_CP016357|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

104. spacer 2.2|959166|33|NZ_CP016357|PILER-CR matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

105. spacer 2.2|959166|33|NZ_CP016357|PILER-CR matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

106. spacer 2.2|959166|33|NZ_CP016357|PILER-CR matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

107. spacer 2.30|959350|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

108. spacer 2.30|959350|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

109. spacer 2.36|959716|32|NZ_CP016357|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

110. spacer 2.45|960265|32|NZ_CP016357|CRISPRCasFinder,CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tttgtccatgccgcgacgatcgataccgaaaa	Protospacer
 . .* .**************** * ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1126940 : 1135877

Enterobacteria_phage(83.33%)

integrase

attL 1129470:1129484|attR 1148209:1148223

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023165629.1\|1126940_1129274_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.9
WP_023165628.1\|1129288_1129609_-	DUF5375 domain-containing protein	NA	NA	NA	NA
1129470:1129484	attL	NA	NA	NA	NA
WP_001216602.1\|1129605_1129833_-	hypothetical protein	NA	NA	NA	NA
WP_065304909.1\|1129829_1130381_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.4e-32	72.2
WP_023165627.1\|1130377_1130644_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	8.9e-31	72.7
WP_023168253.1\|1131193_1131937_+	hypothetical protein	NA	NA	NA	NA
WP_023165625.1\|1131940_1132177_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.1e-19	58.0
WP_023165624.1\|1132192_1132759_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	6.7e-60	64.9
WP_023165623.1\|1133154_1134048_+	DUF4747 family protein	NA	NA	NA	NA
WP_077910011.1\|1134215_1134653_+	hypothetical protein	NA	NA	NA	NA
WP_023165621.1\|1134683_1135877_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.4e-107	50.1
1148209:1148223	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1661926 : 1671097

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1661926_1662874_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1662857_1663589_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1663569_1663677_-	protein YohO	NA	NA	NA	NA
WP_001240417.1\|1663736_1664468_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1664690_1666376_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1666372_1667092_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1667138_1667606_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1667662_1668193_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1668364_1668823_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195330.1\|1669063_1671097_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1739187 : 1749694

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111837.1\|1739187_1740591_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981471.1\|1740768_1741662_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1742038_1743124_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023659.1\|1743123_1744023_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857530.1\|1744070_1744949_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_000973714.1\|1744949_1745501_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000018224.1\|1745506_1746481_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1746496_1747270_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565902.1\|1747274_1748354_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000126351.1\|1748380_1749694_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_4

1846225 : 1853476

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1846225_1846645_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457658.1\|1846647_1847916_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000208509.1\|1848370_1848583_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1848593_1848782_+	hypothetical protein	NA	NA	NA	NA
WP_001080660.1\|1849039_1850236_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_000107431.1\|1850885_1851197_+	hypothetical protein	NA	NA	NA	NA
WP_000377036.1\|1851276_1851972_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
WP_001157313.1\|1852045_1853476_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

1956151 : 2044862

Enterobacteria_phage(32.69%)

integrase,transposase,terminase,head,protease,portal,tail,holin,lysis,capsid

attL 1958361:1958383|attR 2019923:2019945

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000856224.1\|1956151_1956382_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168395.1\|1956519_1956894_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000979686.1\|1956894_1957770_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|1957786_1958140_+	YebY family protein	NA	NA	NA	NA
1958361:1958383	attL	NA	NA	NA	NA
WP_000078710.1\|1958512_1959592_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	51.4
WP_031603794.1\|1959572_1959845_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
WP_023165615.1\|1959905_1960334_-	hypothetical protein	NA	NA	NA	NA
WP_000280164.1\|1960432_1960618_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
WP_001126028.1\|1960664_1961495_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_023168696.1\|1961487_1964178_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	2.0e-117	83.5
WP_000799629.1\|1964318_1964654_-	hypothetical protein	NA	NA	NA	NA
WP_023165608.1\|1964728_1965013_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
WP_001674119.1\|1965394_1965550_-	DUF1391 family protein	M4QQ57	Salicola_phage	4.7e-08	55.3
WP_023165607.1\|1965860_1966286_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
WP_023165606.1\|1966382_1966637_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_001534383.1\|1966623_1967118_+	hypothetical protein	NA	NA	NA	NA
WP_023165605.1\|1967162_1968032_+	hypothetical protein	A0A088CD36	Shigella_phage	9.1e-32	62.4
WP_000788954.1\|1968038_1968791_+	ATP-binding protein	A0A088CBP4	Shigella_phage	5.9e-104	76.5
WP_000089406.1\|1968808_1969204_+	DUF977 family protein	A0A088CBK9	Shigella_phage	5.4e-16	37.0
WP_000687977.1\|1969200_1969473_+	hypothetical protein	NA	NA	NA	NA
WP_001597144.1\|1969676_1969832_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
WP_001637498.1\|1970082_1970331_+	hypothetical protein	NA	NA	NA	NA
WP_023165603.1\|1970394_1970994_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.1e-96	82.9
WP_000784704.1\|1970990_1971185_+	hypothetical protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
WP_001736205.1\|1971166_1971475_+	hypothetical protein	G8C7V5	Escherichia_phage	6.5e-33	76.7
WP_001204682.1\|1971484_1971847_+	antitermination protein	Q777W5	Enterobacteria_phage	1.3e-53	80.8
WP_023165602.1\|1971959_1974416_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_023165601.1\|1974773_1974962_+	hypothetical protein	NA	NA	NA	NA
WP_023165600.1\|1975130_1975337_+	hypothetical protein	NA	NA	NA	NA
WP_023165599.1\|1975327_1975876_-	hypothetical protein	NA	NA	NA	NA
WP_001525456.1\|1976050_1976353_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_023165598.1\|1976330_1976870_+	lysozyme	S5MQK2	Escherichia_phage	2.0e-77	74.7
WP_134794495.1\|1977187_1977643_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.8e-55	78.1
WP_023165596.1\|1977869_1978271_-	PPC domain-containing protein	NA	NA	NA	NA
WP_001102153.1\|1978556_1979102_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000623088.1\|1979073_1981005_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
WP_000201416.1\|1980988_1981192_+	gpW family protein	K7PM10	Enterobacteria_phage	2.1e-16	70.8
WP_000831820.1\|1981188_1982769_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-188	62.8
WP_023165595.1\|1982758_1984255_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	9.6e-98	52.7
WP_000011260.1\|1984267_1984615_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_000522566.1\|1984669_1985698_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_023165594.1\|1985755_1986127_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000083292.1\|1986137_1986521_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
WP_000817265.1\|1986553_1987684_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	4.0e-213	98.1
WP_000677089.1\|1987792_1988371_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000033885.1\|1988367_1988769_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|1988776_1989523_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|1989573_1989969_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|1989965_1990304_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_023165593.1\|1990275_1993371_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.2e-277	61.8
WP_000447370.1\|1993373_1993703_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_001156291.1\|1993712_1994411_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	4.6e-103	75.4
WP_000662736.1\|1994417_1995155_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.0e-129	85.0
WP_000246124.1\|1995052_1995700_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
WP_023165592.1\|1995761_1999124_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.2
WP_000178851.1\|1999162_1999405_+	hypothetical protein	NA	NA	NA	NA
WP_023165591.1\|1999458_2002140_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1B0VFW4	Salmonella_phage	2.4e-147	64.2
WP_023165590.1\|2002154_2002673_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	4.5e-47	53.8
WP_023165589.1\|2002843_2003485_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_000836775.1\|2003759_2003993_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.8e-35	97.4
WP_125468752.1\|2004066_2004180_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	1.8e-09	91.9
WP_000842530.1\|2004240_2004642_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	4.7e-60	89.7
WP_001093795.1\|2004638_2004851_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	1.6e-27	92.9
WP_023165588.1\|2006171_2006867_-	T3SS effector NleG family protein	NA	NA	NA	NA
WP_023165586.1\|2008001_2008802_-	hypothetical protein	NA	NA	NA	NA
WP_000087646.1\|2009744_2010824_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
WP_000789530.1\|2013032_2013200_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|2013264_2013453_-	hypothetical protein	NA	NA	NA	NA
WP_023165585.1\|2013925_2014801_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.1e-64	74.3
WP_031604217.1\|2014904_2015105_-	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_000457876.1\|2015673_2015799_+	hypothetical protein	NA	NA	NA	NA
WP_000951652.1\|2016312_2016459_-	hypothetical protein	NA	NA	NA	NA
WP_000848072.1\|2016946_2017561_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_000480735.1\|2017570_2017729_-	hypothetical protein	NA	NA	NA	NA
WP_001233445.1\|2017861_2018776_-	DMT family transporter	NA	NA	NA	NA
WP_001617922.1\|2021902_2022043_-	hypothetical protein	NA	NA	NA	NA
2019923:2019945	attR	NA	NA	NA	NA
WP_001752421.1\|2022207_2022477_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
WP_000354410.1\|2022846_2023266_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_023168584.1\|2026338_2027352_-	acyltransferase family protein	NA	NA	NA	NA
WP_000774038.1\|2028048_2028252_-	outer membrane fimbrial usher protein	NA	NA	NA	NA
WP_000143844.1\|2028435_2028720_-	hypothetical protein	NA	NA	NA	NA
WP_000974708.1\|2029879_2030089_+	CZB domain-containing protein	NA	NA	NA	NA
WP_000030945.1\|2030316_2030793_-	hypothetical protein	NA	NA	NA	NA
WP_000422887.1\|2031108_2031504_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
WP_000182072.1\|2032187_2032910_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_001134856.1\|2033194_2033359_+	membrane protein	NA	NA	NA	NA
WP_000986175.1\|2033582_2034233_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.7e-57	50.9
WP_000457836.1\|2034251_2034443_-	YebW family protein	NA	NA	NA	NA
WP_024131167.1\|2034553_2034790_-	DUF1480 family protein	NA	NA	NA	NA
WP_001670762.1\|2034907_2036347_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001521100.1\|2036424_2039058_-	PqiB family protein	NA	NA	NA	NA
WP_001207294.1\|2039026_2040310_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001518229.1\|2040438_2040936_+	GAF domain-containing protein	NA	NA	NA	NA
WP_000431401.1\|2041033_2041720_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_001091239.1\|2041739_2043788_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000984498.1\|2043980_2044862_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2804716 : 2845113

Escherichia_phage(23.08%)

tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938182.1\|2804716_2805397_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
WP_000374046.1\|2806015_2806675_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2806761_2807091_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2807087_2807369_-	acylphosphatase	NA	NA	NA	NA
WP_000548080.1\|2807417_2808197_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859429.1\|2808222_2808771_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140482.1\|2808985_2810197_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2810254_2810572_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2810616_2811030_-	CoA-binding protein	NA	NA	NA	NA
WP_000847732.1\|2811203_2811866_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2811960_2812419_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420513.1\|2812454_2814509_-	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
WP_001261222.1\|2814632_2815079_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950876.1\|2815097_2817251_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2817237_2817843_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2818059_2818569_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2818925_2819978_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2820049_2820502_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_023165475.1\|2820687_2822448_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2822516_2823035_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2823134_2823302_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2823557_2824121_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|2824117_2825758_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2825762_2827016_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2827030_2828938_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086485.1\|2828950_2831059_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224072.1\|2831157_2832267_+	YcbX family protein	NA	NA	NA	NA
WP_001670452.1\|2832263_2832806_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2832971_2833982_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193770.1\|2834189_2836802_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
WP_000497461.1\|2837228_2837468_+	DinI family protein	K7PKM2	Enterobacterial_phage	2.1e-31	92.2
WP_000102290.1\|2837566_2838514_+	hypothetical protein	A5LH79	Enterobacteria_phage	2.6e-64	45.1
WP_000080923.1\|2838531_2838972_+	hypothetical protein	A5LH78	Enterobacteria_phage	1.3e-23	44.5
WP_102136365.1\|2838995_2839280_-	helix-turn-helix domain-containing protein	F1C5B3	Cronobacter_phage	8.1e-06	54.9
WP_000364380.1\|2839348_2839525_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000161710.1\|2840070_2840793_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000143178.1\|2840989_2841571_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.8e-92	87.4
WP_000583377.1\|2841570_2843280_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	7.6e-91	65.6
WP_000729405.1\|2843276_2843903_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	9.6e-92	71.2
WP_001281711.1\|2843886_2845113_-\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	3.6e-151	65.4

DBSCAN-SWA_7

2855126 : 2881689

Salmonella_phage(70.97%)

holin,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001110972.1\|2855126_2856158_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.5e-73	45.5
WP_023168991.1\|2856175_2857021_-	hypothetical protein	NA	NA	NA	NA
WP_000860554.1\|2857068_2858643_-	NUDIX domain-containing protein	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
WP_001084019.1\|2858643_2859519_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	2.0e-55	45.5
WP_001150141.1\|2859490_2860921_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	1.8e-93	38.1
WP_000179871.1\|2860920_2862192_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	6.1e-85	38.8
WP_001118139.1\|2862181_2863153_-\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	2.0e-24	33.2
WP_000971525.1\|2863596_2864067_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.7e-54	73.9
WP_001222798.1\|2864063_2864513_-	lysozyme	A0A0M4R365	Salmonella_phage	9.6e-78	96.0
WP_165798564.1\|2864499_2864844_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	5.1e-47	80.7
WP_000357058.1\|2865081_2865579_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	8.2e-38	53.3
WP_001047624.1\|2865881_2866691_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.2e-110	69.5
WP_000801753.1\|2866690_2866828_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.9e-09	81.6
WP_001096545.1\|2866824_2867436_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	7.9e-91	98.5
WP_000929789.1\|2867644_2868247_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	1.4e-108	98.0
WP_031606790.1\|2868281_2868530_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	8.0e-42	98.8
WP_001217669.1\|2868649_2868883_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000704096.1\|2869152_2870145_+	M85 family metallopeptidase	NA	NA	NA	NA
WP_000065482.1\|2870171_2870705_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	3.8e-41	67.9
WP_000113624.1\|2870701_2871049_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.3e-58	99.1
WP_000800012.1\|2871059_2871809_-	ATP-binding protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_001736365.1\|2871811_2872795_-	replication protein	H6WRX7	Salmonella_phage	2.0e-160	99.0
WP_065304520.1\|2872879_2873257_-	transcriptional regulator	S4TTD7	Salmonella_phage	2.4e-37	64.1
WP_001013670.1\|2873222_2873459_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.3e-38	100.0
WP_024136368.1\|2873562_2873946_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.3e-62	99.2
WP_001230760.1\|2873973_2874375_+	helix-turn-helix domain-containing protein	A0A0M4REM4	Salmonella_phage	6.8e-67	99.2
WP_000551859.1\|2874791_2874962_+	hypothetical protein	H6WRX3	Salmonella_phage	3.3e-15	78.8
WP_023165479.1\|2874983_2875334_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000014350.1\|2875460_2878661_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	78.7
WP_001539618.1\|2878623_2879781_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2879823_2880063_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2880103_2880352_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262307.1\|2880396_2881689_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0

DBSCAN-SWA_8

4302934 : 4347710

Burkholderia_phage(40.91%)

tail,plate,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182228.1\|4302934_4303933_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039337.1\|4304020_4305331_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4305577_4306093_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4306192_4306402_-	CsbD family protein	NA	NA	NA	NA
WP_001575282.1\|4306423_4306537_-	hypothetical protein	NA	NA	NA	NA
WP_001128103.1\|4306533_4307859_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4308037_4308646_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4308754_4309123_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4309293_4311714_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4311812_4312685_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019230.1\|4312698_4313196_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4313376_4314294_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973678.1\|4314457_4315816_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4315904_4317014_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4317375_4318566_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382575.1\|4318697_4320242_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252081.1\|4320256_4321147_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4321312_4321723_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750806.1\|4321865_4323962_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977959.1\|4323961_4324699_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_122821798.1\|4324695_4325364_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4325397_4325640_-	outer membrane protein	NA	NA	NA	NA
WP_000790036.1\|4326083_4327733_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4328077_4329427_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4329557_4329905_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226442.1\|4330482_4330770_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_001270441.1\|4330772_4331378_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_000777266.1\|4331390_4331705_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4331864_4332320_+	Gp37 family protein	NA	NA	NA	NA
WP_000875314.1\|4332316_4332514_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729849.1\|4332503_4333931_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
WP_000907495.1\|4333930_4334455_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|4334506_4334824_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185656.1\|4334783_4334912_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262484.1\|4335008_4337363_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
WP_000271429.1\|4337362_4338316_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001269716.1\|4338315_4338525_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818152.1\|4338512_4339556_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
WP_000679396.1\|4339565_4340288_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
WP_000593184.1\|4340611_4340974_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000703634.1\|4340970_4341900_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	6.7e-150	83.8
WP_000632048.1\|4341899_4343447_+	hypothetical protein	B9UDL6	Salmonella_phage	2.5e-48	29.9
WP_001093501.1\|4343610_4343970_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951728.1\|4343960_4345076_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
WP_000359503.1\|4345068_4345701_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000368212.1\|4345703_4347185_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.6e-52	52.7
WP_001177098.1\|4347194_4347710_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016357

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection