CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number
NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	1 crisprs	cas2,cas1,csx18,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csx3,WYL	14
NZ_CP007542	Synechocystis sp. PCC 6714 chromosome, complete genome	4 crisprs	DinG,RT,cas4,csx3,WYL,cas2,cas1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6,csx1,c2c9_V-U4,DEDDh,cas14j,cas3	1
NZ_CP007545	Synechocystis sp. PCC 6714 plasmid pSYLC, complete sequence	0 crisprs	NA	0
NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	1 crisprs	WYL,cas6,cas3,cas8b3,cas7,cas5,cas1,cas2	11

Cas Category Instructions

Results visualization

1. NZ_CP007543

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007543_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007543_1

56272-57341

TypeIII

Consensus_repeat	Method
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CRISPRCasFinder
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CRT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	PILER-CR

14 spacers

cas2,cas1,csx18,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7

The CRISPR arrays of NZ_CP007543_1

>merge|NZ_CP007543|1|56272-57341|CRISPRCasFinder,CRT,PILER-CR
GTTTTAAATCAGTTAATTTCTCCTACGAGTCGAGACACTGAAGCTGGAATTCTAAAAAAAGTATTAAGAACTGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACGAATCATGACTACATTAACCTTTGTTCAATCTCTAGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACTCAAAGTAAAAAAGAAAGATCGAATATTCCTAGAAGACGGGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACTACGGAATGTGAACATAGTAGTGCCGTGGGCGACTACGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACGAGTTGGGATCATTTACTCCCCAAGACTTCATCAGGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACTCCTTCTTTATAACTAAATTGTCACCGGCGTTTATCGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACCTTCTTTAGACAAAAAATCAATAAAAGAACTACGCAAGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACAACAACATGGACTTCCTCAATCTTCTGTTTGTTTAGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACAACAACATGGACTTCCTCAATCTTCTGTTTGTTTAGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACTGCATTGCAGCGAACAGATCGACTGGCTGGCGGCACATGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACATTGGTTGTGTGGCTGGAATCGCCTCAAGAACAACCTTTGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACACAGCGGGCTGTATCAGCCCAACGGCAAGGAAGTTATCTATTTCCTGGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACATGTTTGGCATCCATGCTGCTCCTTACAACCTTTTTGCGGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGACCCGTGCTAAAAACAGCGCTTGCACTGCCCGCCCGGTCGGTAGTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC

>NZ_CP007543|1|1|56272-57341|CRISPRCasFinder
GTTTTAAATCAGTTAATTTCTCCTACGAGTCGAGAC	ACTGAAGCTGGAATTCTAAAAAAAGTATTAAGAACT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAATCATGACTACATTAACCTTTGTTCAATCTCTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCAAAGTAAAAAAGAAAGATCGAATATTCCTAGAAGACGG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TACGGAATGTGAACATAGTAGTGCCGTGGGCGACTAC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAGTTGGGATCATTTACTCCCCAAGACTTCATCAG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCCTTCTTTATAACTAAATTGTCACCGGCGTTTATC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CTTCTTTAGACAAAAAATCAATAAAAGAACTACGCAA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TGCATTGCAGCGAACAGATCGACTGGCTGGCGGCACAT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATTGGTTGTGTGGCTGGAATCGCCTCAAGAACAACCTTT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ACAGCGGGCTGTATCAGCCCAACGGCAAGGAAGTTATCTATTTCCTG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATGTTTGGCATCCATGCTGCTCCTTACAACCTTTTTGCG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CCGTGCTAAAAACAGCGCTTGCACTGCCCGCCCGGTCGGTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC

>NZ_CP007543|1|1|56272-57341|CRT
GTTTTAAATCAGTTAATTTCTCCTACGAGTCGAGAC	ACTGAAGCTGGAATTCTAAAAAAAGTATTAAGAACT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAATCATGACTACATTAACCTTTGTTCAATCTCTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCAAAGTAAAAAAGAAAGATCGAATATTCCTAGAAGACGG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TACGGAATGTGAACATAGTAGTGCCGTGGGCGACTAC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAGTTGGGATCATTTACTCCCCAAGACTTCATCAG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCCTTCTTTATAACTAAATTGTCACCGGCGTTTATC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CTTCTTTAGACAAAAAATCAATAAAAGAACTACGCAA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TGCATTGCAGCGAACAGATCGACTGGCTGGCGGCACAT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATTGGTTGTGTGGCTGGAATCGCCTCAAGAACAACCTTT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ACAGCGGGCTGTATCAGCCCAACGGCAAGGAAGTTATCTATTTCCTG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATGTTTGGCATCCATGCTGCTCCTTACAACCTTTTTGCG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CCGTGCTAAAAACAGCGCTTGCACTGCCCGCCCGGTCGGTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC

>NZ_CP007543|1|1|56344-57341|PILER-CR
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAATCATGACTACATTAACCTTTGTTCAATCTCTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCAAAGTAAAAAAGAAAGATCGAATATTCCTAGAAGACGG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TACGGAATGTGAACATAGTAGTGCCGTGGGCGACTAC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	GAGTTGGGATCATTTACTCCCCAAGACTTCATCAG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TCCTTCTTTATAACTAAATTGTCACCGGCGTTTATC
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CTTCTTTAGACAAAAAATCAATAAAAGAACTACGCAA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	AACAACATGGACTTCCTCAATCTTCTGTTTGTTTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	TGCATTGCAGCGAACAGATCGACTGGCTGGCGGCACAT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATTGGTTGTGTGGCTGGAATCGCCTCAAGAACAACCTTT
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ACAGCGGGCTGTATCAGCCCAACGGCAAGGAAGTTATCTATTTCCTG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	ATGTTTGGCATCCATGCTGCTCCTTACAACCTTTTTGCG
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC	CCGTGCTAAAAACAGCGCTTGCACTGCCCGCCCGGTCGGTA
GTTTCCAATCAATTAATTTCTCCTACGAGTGGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007543.1\|WP_028946524.1\|52860_53733_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946534.1\|64279_64702_+\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NZ_CP007543.1\|WP_028946531.1\|59307_62250_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NZ_CP007543.1\|WP_028946526.1\|54490_54904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946528.1\|55548_55938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946532.1\|62252_63362_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP007543.1\|WP_028946521.1\|50092_50629_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946520.1\|48966_49983_-\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NZ_CP007543.1\|WP_028946523.1\|52163_52754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946536.1\|66770_67904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP007543.1\|WP_028946525.1\|53757_54384_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
NZ_CP007543.1\|WP_028946522.1\|50579_51929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_028946628.1\|67954_68914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372629
NZ_CP007543.1\|WP_081857712.1\|64793_66722_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187792
NZ_CP007543.1\|WP_011153761.1\|57547_57826_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007543.1\|WP_028946527.1\|55032_55530_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226986
NZ_CP007543.1\|WP_028946529.1\|57829_58819_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP007543.1\|WP_028946533.1\|63465_64245_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|274210
NZ_CP007543.1\|WP_158506527.1\|55986_56127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007543.1\|WP_051738958.1\|58815_59184_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007543.1\|WP_028946525.1\|53757_54384_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	7.2272e-31
NZ_CP007543.1\|WP_028946529.1\|57829_58819_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.7194e-105
NZ_CP007543.1\|WP_028946531.1\|59307_62250_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	4.90207e-43
NZ_CP007543.1\|WP_081857712.1\|64793_66722_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.97589e-16
NZ_CP007543.1\|WP_028946532.1\|62252_63362_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	2.63092e-88
NZ_CP007543.1\|WP_011153761.1\|57547_57826_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.21658e-35
NZ_CP007543.1\|WP_028946527.1\|55032_55530_-\|AAA-family-ATPase	gnl\|CDD\|226986	COG4639, COG4639, Predicted kinase [General function prediction only].	3.5038e-25
NZ_CP007543.1\|WP_028946520.1\|48966_49983_-\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	6.31504e-48
NZ_CP007543.1\|WP_028946628.1\|67954_68914_-\|hypothetical-protein	gnl\|CDD\|372629	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain. This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	0.00635908
NZ_CP007543.1\|WP_028946536.1\|66770_67904_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.48444e-07
NZ_CP007543.1\|WP_028946533.1\|63465_64245_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	9.63553e-37

>NZ_CP007543.1|WP_158506527.1|55986_56127_-|hypothetical-protein
MQLKHWQSQKQEQKKSAGAPKKVRRQKARLQALRKKLHSSRARNQP
>NZ_CP007543.1|WP_028946528.1|55548_55938_-|hypothetical-protein
MNSIFTINPYWTGSTWAFDAAEVGLLGEPFVSGADAILSAIVQRELTLETEQGSQFELIFSAEGFPSYHACFERQEAEYEGYWYKVVDAGNDYQNLDFGDRGWLCPATLHFFPGGHPEKLYIQVRAIDQ
>NZ_CP007543.1|WP_028946527.1|55032_55530_-|AAA-family-ATPase
MTSVFHVLIGCPASGKSTLAAHLHQAIPQSQIISTDQIRKDLFGDAATQGDWALINREISTQIAQAIAAGKEIIYDATNAEKAWRSELLDSLKKLDDLKIIGWYLQTPLEVCCQRNKNRLRQVPEDVIEIYAMALEKSPPSKDEGFTEFHHIPYDQLENIDFSQL
>NZ_CP007543.1|WP_028946526.1|54490_54904_-|hypothetical-protein
MRYKNNCRINRIRKDKMTTCINNSLFTIEPYWLGRTWAFDAPNLGVMAEPFVAGTNIVLTQLAKTRLGIEPNDGAKFQLIFSAQKFPGLHLSFRRQEPEFDGYWYISESQDWAWFSSTMTSFFSNGHPEELYLQVLR
>NZ_CP007543.1|WP_028946525.1|53757_54384_-|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MIKQLSLFDIYPNSSPEEIIIPDGHLQLYHSIFSDVEASRYYDRLEKEICWQQDSIILFGKSQPLPRLTAWYGDPERSYTYSGIAMEPTPWIPLLQAIKTKAETLAKATFNSVLLNFYRTGADGVSWHADDEPELKKDYPIASVSFGGTRRFLLKHKTDPTVEKVELILTSGSILLMLDTTQEYWLHQIPKTKKFVEPRINLTFRFIQ
>NZ_CP007543.1|WP_028946524.1|52860_53733_-|hypothetical-protein
MYDALLPIVMDSYGQNFRCMPSFLSGLQPAVKELRQRYRTNNVQVDYGQPQIQAAYLLTYYPYYVQQTHHNLSLASQHHYVAHLLRQRNLQVTLLGSGPMPEAAALATYRQKLRFASSLKAISYDLNVHQWRSACQITARLMADLAPNITYKYEGHPLNLAQRHALFPAEWNIQNSQLIIIQNCLNEIYRANLGAFKQNMQFLMNNMAPGSTLLLSDLDYPQTSRCLQLLKQLADATPGITTVFDHGDRLLKYENRFSLPFSIRRHLLTGQNGLIPKKWIRQFSLCLLKQ
>NZ_CP007543.1|WP_028946523.1|52163_52754_-|hypothetical-protein
MTDFKALIESKLSSILGKKIKVTDKAKECLQRLAESEQNFYSWHLKLLSIIFDVSPEIWDILKEVDEGFNNFNFAVLDAQVRDYFVKNESTPTVICDQISDFDDFLATLFFKAANTGGLGVVYTSPPPSKAEIIEDTVTIDHLVGMLFYVLYAGYYESDLAVALLIMNNFGIAFGRNNRRYLDELEHIMTKTKLRS
>NZ_CP007543.1|WP_028946522.1|50579_51929_-|hypothetical-protein
MTINTDAILITDGDRQQVRDLIQWLKTNRPDLVEKARNPDILQQEQNHAQTFRGKIEQLQKLVPGFTYVHPDSLHGHYHVTPDLKKSAKATAVVMTTSNWIDTVGNLPVFFFAFKSLFFLPALGMAVLLSIPVLASSNALSTAVAHGHKGRWKLAIAALVFGLIPLNILQTVTTGIGMEVINNQSALAQIAAGDALDNIVGAKQKNLQFAETNLHPDIAKCEEGRQELEAMPRSNAMEEKGFQSRYVRLYGTFSSQSQPMTVPIEQLPLCIRANRIQAEQQDQLQQLGQQLQDFKLERQTLGNDLMFLKQVAPQQYGKTFVEVRPFWRLGGGEPTVEVRNGLELVSLGVNSFQTKFATGQWDQLGISLFFVGISAITSAASVAMGISFPLGKDTQRSYDESHKEKVNRFFQRARMTLTQMHDEQQQELLEPGADDDNLLEDDYEFGRYN
>NZ_CP007543.1|WP_028946521.1|50092_50629_-|hypothetical-protein
MMIICWRMTMSLADITDFSEALALLGLYEREVMTTGVMEYVVPPKVLAKPAQVPESVANPPNEQASSPPPANIPQDTPALPEATPASSPVNNTTINEGIIIVNGVHDSEDGNEPPSQIQRVDASQETLPLPTPGPSELELLLEEQQVEKLLFYLFVEEIEQTGDLGKLPVALQPNGKS
>NZ_CP007543.1|WP_028946520.1|48966_49983_-|family-10-glycosylhydrolase
MKKLLESLKWPALFVGIVLLLAVCHRAPTRTAKETDKMKGVWLTDVGTMGLTYSTLLDETLHHISKSGYDRVYFSVYGLRGQLYPTRQRGDLIPKLPFPNAVGSMARESRRQGLKPYAWFEYGLMLPQFDSVAKNNPDWLLTMPNGEQVIENHGIPMVWLDPSHPEVEAYILGHIDDILKEKSLAGIQLDDHWAVPRQFGDYRRSLTALTTKVHEHIKTKNPEFELSLSPNPYQFSLREYNQDWLRWVKQGIVDEVVVQIYRSSPAEVQQAVNNSGIYTASHYVPVGVGIYTGRKIKPFNLQSIKDQVNAVEKQNLGHSLFVWEFMVLRVINIHLNIL
>NZ_CP007543.1|WP_011153761.1|57547_57826_-|CRISPR-associated-endonuclease-Cas2
MFLYVIAYDIPDDRRRKKMADLLEGYGQRVQYSVFECTLSKSKFNELQKRLRKIYQSEEDSLRFYPLSGHTLTQVDIWGEPPLTKPPGSVIV
>NZ_CP007543.1|WP_028946529.1|57829_58819_-|CRISPR-associated-endonuclease-Cas1
MKTLYVSQSDCYVSLRKEFLLVKRQDRILAEVQLLFLEQVLIFGKAQVTTQAIHACLSRNIPILYLSRMGFCYGRIIAIERGYRHLSRYQQELGWQQRLITARTIVTAKIKNARVFLQRQHRKHPTPSLQLAIDGLKHFVELTIKAERLEQLLGYEGTAANLYFQTWADCIKNSNFIFFGRSRRPPGNPVNAMLSFGYQVLWNHLLTLIELQGLDPYQACLHQGSERHAALASDLIEEFRVPIVDSLVLYMINRRLIDVGEDFVFQNGGCFLNSSGRRKWLGAFVGRMEKVLSFDQGDFPRWHCLIDQVKKYKAFIYSPSNSYSPFLIR
>NZ_CP007543.1|WP_051738958.1|58815_59184_-|hypothetical-protein
MFKKLHTIFVVRGVKISATFLTVSRSMYSPSRLLFARNLVLAIANGLITLVILLIAPLGLAAVIINTLLVACSTFMLSVFGDVVVRWLLQGTNPHGLPTNANPNVGITPQTSHQPIQRRDRW
>NZ_CP007543.1|WP_028946531.1|59307_62250_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEVYWQAKIWGLLHDPALKALHNNSGRGGEGAWQSLGCMQNWVSPKSSTEKKDGELSNSWLDHIGLSDLIASASDRGAIHYIGTPIDYDGNGLELSHLLSGAKLPLKLANHSEIIGQGNRRTYLDQKELELIQQMPAEFLQGTDKAQECFWWLWRCLPEVVAQQFGAESLLMPAETRLPDASIWSHGSMTAALAGALAGYDTNIEDIAKGARNTPKSQAYLAVFTFSPIQELIKASRKIKDFWAGSWILHYLSAKVCWELAQQYGPDCFLYPSLYSQPLIDHWLLEKYGGQGFSQWVPQPGDRQLLTAGFPNVIMLVLPKEKVSAAMQSAKNHLLNAWRNIAHLVFAQLQQRHWQKNLNQTDPTWKHWLDAQWQTYWSAMAIGAEGKTLKSVGIPTQTPESKAQRDQWVREQNEAFSASLFAQEELDFIEKSTDLFIQQRNRNYAGSLNVGSWWADIFGQTRFTLSAVKNARNWKIPTAFGPRSTISGLGPVVHPQAPSHQRDWVTEGDTQKYWQRQAGLFDGSEQLNATETVKRGLEKVLPALLGRGAKELKTYYPDLTVGIAGYLKTQPDGLPIFQQACSAISQKILGDRHKVADSVTQDWGIPWVEENMEKKYHPRLLNSGWLVEELEDLDQIELPSYRQALQTEIEKFYPQNNPTSWYVLAAGDGDGMSEWLKGTKMRTYGDYFPQVLTVLEDLKPTFEPFSKQPKRMGPATHNALSRALLDFSNQLVPYLTEQRYAGRLIYSGGDDVLAYTNLWEWDQWLWDIRQAFRGDHDEHNEFDSTGHYWRSKTARKNLPQRPLFTMGDGATISFGITIAHHSVPLAIALEHLWEAEEEAKEHEYEEEGSKKSKDAVQVRIIYGNGNSLKATSKFDTFRAWQELVAIDDLDASTYETAATVLDQHSIPVREAIMPWVNVLVERRSNLHKDQQATLRSHLACFLIKLWQTTNPNDREKEAKNWLKVAAFMKRNRHIKFPHS
>NZ_CP007543.1|WP_028946532.1|62252_63362_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MYWYSLTPLDILLLRDAKPFTPGDRAWAGSIFPPNGHTLAGAVRSLLPQNQTISLIGPLLCHKETLYFPRPLGFVGKTPLLPLPWHDATSPLQSQMLWDKTQPAPLAPLETVSQKDIKRDEKEARTWLPLDVMMGYLQTGTIKPEDWARPEDEDSQPWTMESRPHNSIEAGTRQVKDSDGYFVENGIRLKENWSLAIAVDQTTHQQLQSFPQPLSMRLGGEGHRVTLAHQPALDQQWQRLQILSDQNYQQRQKAIAYLMTPGIFERGRDGVSTCRPYPWEWKLTHNQGSFISMATDRAVSISPRIRDRQRNPGHSIPAPQVFAAPPGTVYYLNQPQGLFADQDNAPKHLQQTRKLGYSHLLWVNLLESR
>NZ_CP007543.1|WP_028946533.1|63465_64245_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNIQHLYLLSPLHTGGTTQEGNLLGIARESHTNFPYIPSSTIRGRLRAAVDDNKRDALFGNDLNSDNGNLTQGSVWVGDGSLLWLPVPSLSHGVIWISCPLLLNRYARVAKVTSQTAIVPYLYNFHQANEKVYLKDAIFDSSELINWDKGQAKKFTPHQSNVAIERALVLPDQHCATVIQMGLWRQVKIKLDQHKTVDGGFRYEEAIPPDTLMYFPWGITAQAKGNQEAGEQFQDLLTVNAIMQIGGQESLGRGFVECF
>NZ_CP007543.1|WP_028946534.1|64279_64702_+|hypothetical-protein
MPNFDPRTLNKCAFEALTNLRKEHQKLVPDFEKAKKGLKDQKNQAMEIYTYLSTWGLMRLKAEEKAISKEQDERRKVVKSFFKYLQELAERNDLAGDDDLKNFVKLSANEYLGLTGLAIELANEFGFWANAVYHDITGAQ
>NZ_CP007543.1|WP_081857712.1|64793_66722_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MATNSGGKATQKNLPKKKVITTPITGGDGGGKKGGGSGGHSGGGHGQNQPPSPWLQRENEPDPSPHKTASFVEYLRWMRQINCNPGQNGKDPTDPTTKVQILQMAMDNAKNYDARLSVCNQRTKAIAKETFEVTCPWRIRVGGHRGPESILLPAFDALGMPYIPSATLRGVARTQAIREVMQNTGKNWKDAEKDSLIVKHFGALDADKADQAGKVVFLDAYPTSGKCLAVDMANNIWSWEGNHLDYSPNPNPFLSLKEPTFLIGLRLISNCSDEQILTQVKKWLIAGLAAGVGSQVNTGYGQLLEDSKKLLNKPFLEVEFALEGQLIHGYQKFTQWQQNNHGDWQMRGKNEAEVRPTAFKSMLRYWFRVFALGVMSVGDVQEWEGKIFGAITPTQSHGFLRVNIINSSITRKEAQRNNDKSGEMAGTLILSFSPEAPEANQDLQALLKNLTWLMFNLGGLGQGARRPCYSRQNRQYAPWWRGSTLFIESDPDPWNDLDELSMKDFAKLLKRRLRSFYDALSGMTGQNINLNNLRNVGQVNRENWQEIADQNCRIVVTSGQGRNSKSYALSQLHSDKFKIQYRDELNYDGNLCGKVRGGVKPSPVWIADVGDYQVVTVFGATASPRSDYLQSLTGAIQIFPLS
>NZ_CP007543.1|WP_028946536.1|66770_67904_-|hypothetical-protein
MTSQNFISDQDTITALQQLTDLIHQGLQQAWDPNIITQAKAEINQTAEQCKRQFHTIHQDVEDLQGSLSEIDQRSGQLTDSIVTAEKVTEVITKMGGPDQLRQDFDRLEQLRSITGQIGEAQAMAQQLQQQTEQLRTDGDRLGQTLTQLGGADALLAQLAQLEEIASQLAGLDSHIDQVTTAVIDRYLPNFEAGKEQIAQWRSEVKDQLTSTLASLEQQKQEINGLIKDLTTKSGQIGSQLTDLEQQRLKLEPLLTAIAKLAEQLGGQDLLQKVATDLGLLDETIAQQQRELVSLKTDLRVEFQRIFDQELEQFKNEQLQVNQRLLSENRQLKEEITKMSQELNYNADQLRRLQAIKCDRPVWTLSNLRRPTPPYLP
>NZ_CP007543.1|WP_028946628.1|67954_68914_-|hypothetical-protein
MAAISQQISEWQEKHSLQWRLAARARLFCSDHYHVSPDRVKFLEFMPVSQAKGREFDSCIAFCLFDLPQNGGQMEAYTKWYTQLTRARSRLLIVTTEAQLAQMGEEIFENLTITKGEKTVNAIERLNYQNPQEVTDALGWITELTSSLDTSATGRQGLREIILESALQSDPILYYDLYYVLKSYDISSQETMAIEADIVNLLFNNAELQAPLKVYFQQPEVEEVPRLQTLIYRCLGQSWQAAEIAQSLKQSDPGTYQEVMTGIQQDLHHRNLPLEADRLARFYGLETSANEFDNASWFKTSDKLIPLLKNLTEERLKIS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP007543_1	1.1\|56308\|36\|NZ_CP007543\|CRISPRCasFinder,CRT	56308-56343	36	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56308-56343	1.0
NZ_CP007543_1	1.2\|56380\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56380-56414	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56380-56414	1.0
NZ_CP007543_1	1.3\|56451\|40\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56451-56490	40	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56451-56490	1.0
NZ_CP007543_1	1.4\|56527\|37\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56527-56563	37	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56527-56563	1.0
NZ_CP007543_1	1.5\|56600\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56600-56634	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56600-56634	1.0
NZ_CP007543_1	1.6\|56671\|36\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56671-56706	36	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56671-56706	1.0
NZ_CP007543_1	1.7\|56743\|37\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56743-56779	37	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56743-56779	1.0
NZ_CP007543_1	1.8\|56816\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56816-56850	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56816-56850	1.0
NZ_CP007543_1	1.8\|56816\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56816-56850	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56887-56921	1.0
NZ_CP007543_1	1.9\|56887\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56887-56921	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56816-56850	1.0
NZ_CP007543_1	1.9\|56887\|35\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56887-56921	35	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56887-56921	1.0
NZ_CP007543_1	1.10\|56958\|38\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	56958-56995	38	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	56958-56995	1.0
NZ_CP007543_1	1.11\|57032\|39\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	57032-57070	39	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	57032-57070	1.0
NZ_CP007543_1	1.12\|57107\|47\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	57107-57153	47	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	57107-57153	1.0
NZ_CP007543_1	1.13\|57190\|39\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	57190-57228	39	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	57190-57228	1.0
NZ_CP007543_1	1.14\|57265\|41\|NZ_CP007543\|CRISPRCasFinder,CRT,PILER-CR	57265-57305	41	NZ_CP007543	Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence	57265-57305	1.0

1. spacer 1.1|56308|36|NZ_CP007543|CRISPRCasFinder,CRT matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

actgaagctggaattctaaaaaaagtattaagaact	CRISPR spacer
actgaagctggaattctaaaaaaagtattaagaact	Protospacer
************************************

2. spacer 1.2|56380|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

gaatcatgactacattaacctttgttcaatctcta	CRISPR spacer
gaatcatgactacattaacctttgttcaatctcta	Protospacer
***********************************

3. spacer 1.3|56451|40|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

tcaaagtaaaaaagaaagatcgaatattcctagaagacgg	CRISPR spacer
tcaaagtaaaaaagaaagatcgaatattcctagaagacgg	Protospacer
****************************************

4. spacer 1.4|56527|37|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

tacggaatgtgaacatagtagtgccgtgggcgactac	CRISPR spacer
tacggaatgtgaacatagtagtgccgtgggcgactac	Protospacer
*************************************

5. spacer 1.5|56600|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

gagttgggatcatttactccccaagacttcatcag	CRISPR spacer
gagttgggatcatttactccccaagacttcatcag	Protospacer
***********************************

6. spacer 1.6|56671|36|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

tccttctttataactaaattgtcaccggcgtttatc	CRISPR spacer
tccttctttataactaaattgtcaccggcgtttatc	Protospacer
************************************

7. spacer 1.7|56743|37|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

cttctttagacaaaaaatcaataaaagaactacgcaa	CRISPR spacer
cttctttagacaaaaaatcaataaaagaactacgcaa	Protospacer
*************************************

8. spacer 1.8|56816|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacatggacttcctcaatcttctgtttgttta	CRISPR spacer
aacaacatggacttcctcaatcttctgtttgttta	Protospacer
***********************************

9. spacer 1.8|56816|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacatggacttcctcaatcttctgtttgttta	CRISPR spacer
aacaacatggacttcctcaatcttctgtttgttta	Protospacer
***********************************

10. spacer 1.9|56887|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacatggacttcctcaatcttctgtttgttta	CRISPR spacer
aacaacatggacttcctcaatcttctgtttgttta	Protospacer
***********************************

11. spacer 1.9|56887|35|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacatggacttcctcaatcttctgtttgttta	CRISPR spacer
aacaacatggacttcctcaatcttctgtttgttta	Protospacer
***********************************

12. spacer 1.10|56958|38|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

tgcattgcagcgaacagatcgactggctggcggcacat	CRISPR spacer
tgcattgcagcgaacagatcgactggctggcggcacat	Protospacer
**************************************

13. spacer 1.11|57032|39|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

attggttgtgtggctggaatcgcctcaagaacaaccttt	CRISPR spacer
attggttgtgtggctggaatcgcctcaagaacaaccttt	Protospacer
***************************************

14. spacer 1.12|57107|47|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

acagcgggctgtatcagcccaacggcaaggaagttatctatttcctg	CRISPR spacer
acagcgggctgtatcagcccaacggcaaggaagttatctatttcctg	Protospacer
***********************************************

15. spacer 1.13|57190|39|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

atgtttggcatccatgctgctccttacaacctttttgcg	CRISPR spacer
atgtttggcatccatgctgctccttacaacctttttgcg	Protospacer
***************************************

16. spacer 1.14|57265|41|NZ_CP007543|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007543 (Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence) position: , mismatch: 0, identity: 1.0

ccgtgctaaaaacagcgcttgcactgcccgcccggtcggta	CRISPR spacer
ccgtgctaaaaacagcgcttgcactgcccgcccggtcggta	Protospacer
*****************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP007542

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007542_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007542_1

384220-384329

Orphan

Consensus_repeat	Method
AAAGTCTTTACCAAAGAAGCTTTTAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007542_1

>merge|NZ_CP007542|1|384220-384329|CRISPRCasFinder
AAAGTCTTTACCAAAGAAGCTTTTAGCTCTGGTCAGTGTCTTACTTTTAATTATACTCAATTCAAATAAGATTGAGACGACTAAAGTCTTTACCAAAGACGCTTTTAGCT

>NZ_CP007542|1|1|384220-384329|CRISPRCasFinder
AAAGTCTTTACCAAAGAAGCTTTTAGCT	CTGGTCAGTGTCTTACTTTTAATTATACTCAATTCAAATAAGATTGAGACGACT
AAAGTCTTTACCAAAGACGCTTTTAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007542.1\|WP_028946645.1\|390872_392234_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP007542.1\|WP_028946654.1\|377931_380367_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP007542.1\|WP_028946647.1\|386202_386925_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP007542.1\|WP_028946653.1\|380504_381293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_144428709.1\|395142_396468_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227328
NZ_CP007542.1\|WP_028946652.1\|381372_382179_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238821
NZ_CP007542.1\|WP_028946641.1\|396545_397355_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007542.1\|WP_038529894.1\|373459_375130_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP007542.1\|WP_081857598.1\|394369_395080_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|161676
NZ_CP007542.1\|WP_028946644.1\|392309_394424_+\|acylase	unknown	unknown	gnl\|CDD\|225241
NZ_CP007542.1\|WP_028946649.1\|384454_385573_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226645
NZ_CP007542.1\|WP_028946655.1\|376667_377786_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP007542.1\|WP_028946651.1\|382327_382963_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP007542.1\|WP_028946650.1\|383135_384032_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|179469
NZ_CP007542.1\|WP_028946648.1\|385667_386216_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP007542.1\|WP_028946646.1\|387906_390606_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP007542.1\|WP_028946656.1\|375553_376369_-\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP007542.1\|WP_028946658.1\|372784_373447_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP007542.1\|WP_158506483.1\|397398_397539_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028946659.1\|371845_372745_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013

Protein	Function_ID	Function_description	E-value
NZ_CP007542.1\|WP_028946645.1\|390872_392234_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP007542.1\|WP_028946654.1\|377931_380367_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.63928e-63
NZ_CP007542.1\|WP_028946647.1\|386202_386925_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	3.72472e-148
NZ_CP007542.1\|WP_081857598.1\|394369_395080_+\|dTMP-kinase	gnl\|CDD\|161676	TIGR00041, Thymidylate_kinase, dTMP kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	1.9057e-71
NZ_CP007542.1\|WP_144428709.1\|395142_396468_+\|CHAT-domain-containing-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	2.03566e-128
NZ_CP007542.1\|WP_028946652.1\|381372_382179_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238821	cd01643, Bacterial_IMPase_like_2, Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate inositol monophosphate or similar substrates.	9.13251e-106
NZ_CP007542.1\|WP_028946641.1\|396545_397355_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.14236e-125
NZ_CP007542.1\|WP_038529894.1\|373459_375130_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	1.82786e-84
NZ_CP007542.1\|WP_028946644.1\|392309_394424_+\|acylase	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	2.83286e-138
NZ_CP007542.1\|WP_028946649.1\|384454_385573_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226645	COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].	7.38512e-59
NZ_CP007542.1\|WP_028946655.1\|376667_377786_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.8391e-61
NZ_CP007542.1\|WP_028946651.1\|382327_382963_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	4.6163e-36
NZ_CP007542.1\|WP_028946650.1\|383135_384032_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|179469	PRK02755, truB, tRNA pseudouridine synthase B; Provisional.	2.03957e-153
NZ_CP007542.1\|WP_028946648.1\|385667_386216_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.1519e-102
NZ_CP007542.1\|WP_028946646.1\|387906_390606_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP007542.1\|WP_028946656.1\|375553_376369_-\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	4.25435e-60
NZ_CP007542.1\|WP_028946658.1\|372784_373447_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	1.91838e-26
NZ_CP007542.1\|WP_028946659.1\|371845_372745_+\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.01164e-134

>NZ_CP007542.1|WP_028946650.1|383135_384032_-|tRNA-pseudouridine(55)-synthase-TruB
MFGFLNFHKPLQLTSHDCVAKVRRLLREKRVGHGGTLDPLAEGVLPMAVGQATRLLPYLPREKQYQAIIRFGIRTDSDDLAGQILENNIVQDLTLTDIERVLPTFLGNIEQIPPQYSAIQINGKRLYELARAGITQDVPSRIVEISNLQVLDWRSGDQPELDLQVTCGEGTYIRALARDLGDRLGVGATLAGLVRQQSGGLNLANSVTLGGLEELVAEGRNIPLLSPQQALNHLPTVQLDTELAKRWFHGQRLPLPDLPIGPVLITTELPPVKCLGVAIVTPEDHGTVLRPKVVFNGD
>NZ_CP007542.1|WP_028946651.1|382327_382963_-|HAD-family-hydrolase
MASTKIIVFDLDGVLIDSEEANYQAFAYGIEQLGLPKPDRQTLISLVGLKASLMLEKLGCPAEEGARIFRDFVQPFYIENLPRLAAPMPQAATVLQSLKQRGYRILACTSGDRRTQTAALKGVGLWSAIEGMHAADDSQFAKPDPRYLQELLAPYDYQTLLHVEDAEVGIRMGQACGAVSIFAEYGYGSLPADLPVDYRLTQLADILAIAT
>NZ_CP007542.1|WP_028946652.1|381372_382179_+|inositol-monophosphatase-family-protein
METFWPEVLGFCQSATKAIATELVAQSAKIPAQRKADGSLVTAADQWSDRELRQRIAAQFPDHGVLTEETAHIFPANDWCWIVDPIDGTTNFTRGIPIWGISLGLLYRGTPVFGFLHFPLLNQSFWGYWLKNSGLTGPHGAFLNGEPIQVSDAEPSQNHLFNLCARSSALLTNPFPCKLRLIGVSSYNIALVALGAALGGTEKTPKIWDIAGAWPILLAAGGEFLCLRPEPLFPLIPGQDYGDRPYPCITASCGELMQQFKGLVLAVG
>NZ_CP007542.1|WP_028946653.1|380504_381293_-|hypothetical-protein
MTQVWFPPKNSATTVKSAGQFLLTEVKALGRGRSYQRLLYRWGPWSGGAFLLTMLWATEWRLILATGLGIGSMRLVYWLLTHRQEIQAKHWRELFSGPQSSLILAGGSGGLTAVGSYMATMVWSEVENPWLATGIILQGLGSLATVGLLLWQRQKLSSPKLLTVPISDFDHCLHYLAHGDRLQKLIALRHLQQWQARQALTPNEQRELVLYLQAFLEVKQESSLQKSALYLLQQCHGFSGHREPLSIPQQQRQRQKIAQEDF
>NZ_CP007542.1|WP_028946654.1|377931_380367_+|transglycosylase-SLT-domain-containing-protein
MEANHGGPQGKKEEEAETNSSPRKRLSLPNLSSPSLGAEAENSDGVEQPESTYLSVPLGRSNQTNVAIAPLNSDYIAPEELDDQPRGFLGSKRWLWLGGILILLIGGTAITLPKALQMVNSWRQEAQLKAYEQEQHQDSEVLRLALLSPTERRARLEAIANQEELSLERSRARFLLAGDLLTEFEGGPAIRMLEGLEVQYPVLAPYILLMRGRGYQLSNENDQAQATWQSILDKYPDSPVVVNALENLGSLNEVYWQQAIADHPGHPRTLAILHQQLETDPNALEIQRQILQNHPTDGRTAAVISNLLANHPGELTPEDWQAVGDNFWHRRIYNQAIAPYEKAPANARNLYRLARAQQISKLDNEAKENYRQLIATYPDSEETALALRRLAELVPPPEGVQYLEQLEQQFPDQGASALAARIDLLAKFDTNQAQQARQILLQKYSNSDAAANYRWRQAQEFAKAGNYSEAWRWAKEIANQNPQSDITPKAIFWIGKWAQQLGRSADSKAAFETVLAKYPQSYYAWRSAVLLGWQVGDFNSVRFLNPPVTVPDQRPLPPAGSPTFRELYRLAQDQEAIELFNAEIRARVEEKATPELTVNEGFTEALLKLTQQEYLQGINQVLNLRNPENPEQRKQWEELRATREYWQTLFPFPYQQLIFEWSEKRQVNPFLVTALIRQESRFEKDIQSPVGATGLMQIMPATAAWIAPQIGLQQYSLTDPTDNVNMGTWYFDHTHKTYNNNSALAVASYNAGPGNVAKWLQEFNNADPDLFVERIPFAETKGYVESVFGNYWNYLRIYDPDVEKLMGQLGR
>NZ_CP007542.1|WP_028946655.1|376667_377786_+|HAMP-domain-containing-histidine-kinase
MAKLSLGSRLFLSHMLVMLVGLGSFVSMAKISSPRMFILRLEELESQGFITVRSAKTYLIRGFETAWNRSSLWAIIFGASAAGGLSFLAADRIMQPLDRLKLATKNLAEGDLQSRMLPSDIPELDELGQSFNRMADSLENVEQQRRELVSDLTHELRSPLTVVRGYLEELAEGRITADPELYQRLVGETRRLERLTVDLQELSKVEAGYLSIQRQPLDLYPLLVKLQQRFADQLLEDGPELILIAEPSLPTALADPDRTEQILVNLIGNAVRYTPSGSILINAHLGKDRKNKEKGNLLWVTVADTGIGIAEEDLPYIFERFWRADKSRSRYSGGTGLGLAIAKRLVELQGGSLIVTSTLGEGSEFSFSLPLV
>NZ_CP007542.1|WP_028946656.1|375553_376369_-|phytoene/squalene-synthase-family-protein
MSLRRNALKVLKETSRTFYIPISILPDQLLDAVASAYLCMRAIDEVEDHPDLDAETKARILNQISLNLQSATEHSQSEDFLRGLDSYKNLLPEVTLRVGEWALLAPESIAPRVWDATAAMSDRMAFWAIHNWQIKTENELDQYTFSVAGAVGLLLSDLWAWHDGTQTNRSHAIGFGRGLQAVNIVRNYKEDRQRGVSFFPQGWELADMHKYARYNLALADQYTKSLPHGPALNFCKIPLTLAYGTLDVLALGKEKLSRSDVMALVNRVIAS
>NZ_CP007542.1|WP_038529894.1|373459_375130_-|MBL-fold-metallo-hydrolase
MTFSVPTQGKPLADISFFPYGVGHRDGGVCLELNLGPYRILLDCGLADLTPLRKRDPGAIDLVVCSHAHGDHALGLWQLHQQFPHIPILTSGVTQRLLPLNWLGVDVPVFSQVLPWRSPQEILPNLKVELMPAGHLPGAALVLLEYHNGDRLYRVVYTGDYCLSHLQLVDGLALAQLRGLRPDVLILEGQYGSRRLPHRRQQEKQFIQAIEAVLAKGRNILLPVPPLGLAQEILKLLRTHHQFTGRQVNLWAGKGVAGGCDAYQEILAYLPDNVRNFAQHQPLFWDDKVYPHLRPLDGPQGKLSLSSPSLVVTESWPGAWPSPPALPGLWTVFLPRLVELPDCLVNFAWENLGQFPQYELADYLLADHSDGRNTTQLIHNLRPQHLVFVHGERSNIEDLTSLEELQSRYQLHSPAAGNWVALPIGDRFVQPTPPLPQIYEGEIHELEPDKNVHHLGEVAIHLDGQIMENSRWAKFGETGIVQARWQGEELILRGISQRELLRQSQTIRGLADGDCCTNCLYFQHYHCRNPESPLMGLQVRGDGHCPVFRSADNVQS
>NZ_CP007542.1|WP_028946658.1|372784_373447_+|HEAT-repeat-domain-containing-protein
MSDLLSQIQTLLSSEDFSDKVRGLNQLRVLEPAEAFPLLKPLVKDANPRIRYAAVSQLDPVGNADLEQALELLRDRLFNDPEIDVQSVAADVIGGLKLTAAYPDLQRAYEETPEWLLQMSIVATLGEMGDSRGFDLLKIALSSENSLIRTAAISALGELGNPEAFPLLVPLAQDEDWQVRYRLALAVGHLNHPDRQNLLQQLAQDRAEQVASTARELLGI
>NZ_CP007542.1|WP_028946659.1|371845_372745_+|prephenate-dehydratase
MPPLVVAHLGPRGTNTETVALVYGEQHQERTGQFVEFLPCPSIGKTLEAAAQGLVDVAIVPVENSTEGGIAITLDCLWSADNLKIQQELVLPITHVLLSRGQSLANLNRVVSHPQALGQCQKWLTAHLPQVSLVPANSTTEAIQIIGDDPTSAAIASPRAATLFDLPVLQTNIQDYPDNCTRFWAVSSEGHLNGSHTTLAFSVPRNVPGALVSPLQLLAQRNINLSRIESRPTKRSLGEYVFFMDLEASQTEPRLREALGQLKQYTEVLKIFGSYPTKVLQLADLQHFHPPGWPASYSP
>NZ_CP007542.1|WP_028946649.1|384454_385573_-|branched-chain-amino-acid-ABC-transporter-permease
MNFGYLIFLITSAATYGIFALGLNLQWGFAGLINFGHVAFMTLGAYATTLLSLRGWPIPLAVLVGMGLAMALGLLIGTSTLRLREDYLAIVTIGVSELIRLIANNEEWLTQGTFGVQSFPWPMDFNPTLLSRIVFVLWLTILAIYAEGILIKNLLRQWKEGKKIQDKSYQPRKPLALLIWGGIASILILIAYIPGVISLYNYSGKAGLMLLALTLLAITYAALEFWVHSPWGRILKAIREDEEIPRALGKNVFWYKLQAFMAGGAIAGLAGALFAWQLTSIYPNNFDTLLTFNAWIIVVLGGAGSNAGTLLGTIIFWAYDSLTRFYLPQIAFLDQSQTGALRVMIIGLILMVLMVWRPQGILGKKEELTLGR
>NZ_CP007542.1|WP_028946648.1|385667_386216_-|ribosome-recycling-factor
MKLAELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVAIRNIRREAVDEVRKQEKNSEISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDITTV
>NZ_CP007542.1|WP_028946647.1|386202_386925_-|UMP-kinase
MSYQRVLLKLSGEALMGDLGYGIDPAVVGTIAQEIKDVLQAGVQLAIVVGGGNIFRGVKASAAGMDRATADYIGMIATVMNAMTLQDALEQMGIPTRVLTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVVFKATKVDGVYDSDPKTNPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPIMIFDLGVPGNIVRAIKGEAVGTLVGENCEVS
>NZ_CP007542.1|WP_028946646.1|387906_390606_+|ATP-dependent-chaperone-ClpB
MQPTDPTKFTEQAWDAIVKSQEVARRYKNTNLEVEHILLALLEQDKGLAARIFQRAGVDGEGLRQQLEIFTNRQPKQAYVEQLYLGRSLDVMLDRADAARSSWEDKFISVEHLLMGFAEDDRMGRKTLRTFNLDPQDLELAIKAIRGSQKVTEPNQEEKYEALDKYGRDLTEQARQGKLDPVIGRDEEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPESLKNRQLISLDMGSLIAGAKYRGEFEERLRSVMKEVTNSDGQIILFIDEVHTVVGAGGREGSGSMDAGNLLKPMLARGELRCIGATTLDEYRKNIEKDPALERRFQQVYVKQPSVEDTISILRGLKEKYEVHHGVKITDSALVAAATLSHRYIQDRFLPDKAIDLVDEAAARLKMEITSKPVELEDIDRRLMQLQMEKLSLEGEEKRPGLGADKSSKERLEKIQQEITELEGQQQELSGQWLSEKQMLEEINILKEKEQELRLQVEKAERATDWEKAAKIKYGELEVLQHDIEEKESKLLEIQGSGNTLLREQVTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQTEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAGFLFDSEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSDHILNLSADDADYDKMQKQVMQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDSALDHIVSAGYDPTYGARPLKRAIQRQLENPIATKILENVFVAGDKILIDCLDNQLSFDKEKEPEPPSEGPGENLTTMEHQQEIKC
>NZ_CP007542.1|WP_028946645.1|390872_392234_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVCVIGTGYVGLVTGVCLAHIGHQVICVDNNEEKVKLMRAGQSPIYEPGLSELMVANMGNGRLIFTTDLGKGVRESEILFIAVGTPALADGSSDTRYVEAVARSIGEHLDSKYRVIVNKSTVPIGSGDWVRMIVTEGNETHQQQTGQAIAINFDVVSNPEFLREGSAVYDTFNPDRIVLGGNNPQALALMRELYTPLIERKVGENPDLPPVPVVMTDLSSAEMIKYAANAFLATKISFINEVANICDRVGADVTQVAQGIGLDSRIGSKFLSAGIGWGGSCFPKDVSALIHTAKDYGYTTSILNAVVEVNQVQRLIVVEKLQQELKILKGKVIGLLGLTFKPDTDDMRDAPALNIIQQLNRLGAKVKAYDPIVSQSGVSHGLSGVQIESTPIMLADQCDALILVTEWQEFLKLDFLALAGRMHQAVIIDGRNFLDKQALQRAGFRYLGIGRS
>NZ_CP007542.1|WP_028946644.1|392309_394424_+|acylase
MLVGMGRKLRRSIGGILLFLLALGLGLTNPVWANDKTEILWDSWGIPHIFAPNETQLMEAFGWAQAQNHGDLLLTLYGEARGKAAEYWGIDYLDNDQYVQTMDIPRRSEGWLNAQTPAMRSDLESFAQGINNYFQQHPDFSNGSLRQVLPITAQDVVAHVQRLLLFEFVTSPQTIASLARQIPEANVPIASNAWAIAPKKSQSGHTLLLTNPHLPWSGQFRLTEAQLVASGLDLTGAAFVGTPVPAMGFNNDLGWSLTVNYPHNVGKYALTLAEGGYEWDGEIKPFDRRINQVKILQGNGSYQTLQWETLESVAGIVVAQRGGNAYTIKIPGLDRSGTIGQFLQMGKAETLEQFEAAWQGQQIPMFNVLYGDRQGNIFYLYNALTPVREGNWQDWERLQPIKGSKDLNTDYYPYEQLPKLTNPASGWLQNTNDPPWTSTFPPELDPADYPPSLAAPDLGFAPSLLRTQRSIKLLENTASLTFEQFKQKVLNSQMELGDRIVPLLVSAAKALANPIGIEAAEVLQAWDKQANPDSRGAVLFMLWALTIGADNVLGGTWNPADPLHSPSGMADINKFMAVLEGVAAQVKFLYDDLAVSWGEVVQMQAGNFTAPANGAPSNLGSFRVLTLSTIANQRFQAVAGDTYLSLVEFADRPGAQSILVYGNASQPDSPHNGDQLELYSKNQLRPVWRSPKEIRAHLEKEEIL
>NZ_CP007542.1|WP_081857598.1|394369_395080_+|dTMP-kinase
MAIAKGDQGPSGKGRNSLKLGKTIMAALFIVLEGIDGSGKTTQGDRLLAYFHNKEIPAVLSPEPTNGPVGSLIRQALQGNLFAYNDPQQFEAQMGYLFAADRHYHLYNPVDGVRAKLAQQCHVITTRYYFSSLAYNCHTEADWQFVQRLNESFPQPDCVIYLDLPVDLALQRLGDRQQLSNQAPRECYEQREKLINVHRNYGRIFDHYQGQLCRLDASLSVEQLHQAIITKVEEML
>NZ_CP007542.1|WP_144428709.1|395142_396468_+|CHAT-domain-containing-protein
MSGIILGLLLFIALAPWVQAQIKFPRPTLVSLQPRSALNVQQVNELTTDLESKWAGIYENYFQEDFSSLGLTTEQIGQKLASLQQETGKKAAIFWINPEEDGVSICLLTGDRPTVGVKVLDTDDQSLMATVEMFSLQVSDPRNQDYRQTGKKLYDWLIAPVAEQLVANNIDTIIFCVGPRLRSLPFAALYDGEKFLAEKYAISRIPGFNLTEWESTDLSEAKILAMGSSEFIDAEPLPGVALEIANITPQPWPGVTMLNQEFTVQNLQSARQRQGFPLVHLATHAEFNAGSPADSYIQFINSRLNLKEIRSLQWQDPPVDLLVLSACTTALGNPQAELGFVGLALQSGVKSALGSLWRVSDLGTMALMSEFYWQLKAKSFKAQALQQAQIRMINGEINLDAGELHTSRGAIAVEDELLTLRNPELSHPYYWASFSLIGNPF
>NZ_CP007542.1|WP_028946641.1|396545_397355_+|nucleoside-triphosphate-pyrophosphohydrolase
MTATAPILQALEKLIAVVAQLRSPEGGCPWDLAQTQQSLIPYVVEEAYEVVHALQSQDQTAIAEELGDLLLQVVLQAQVARDLGHFDLQRVAEGITEKLIRRHPHVFAGVTVANAEEVRANWQVIKAEEKGLNANQSELLSTKLERYNSTYPPLMASAKISRQAAAVGFEWPDIDGVWAKFSEELDEFKQALITEDKEHQQAELGDLLFTLINLARWYNLDASLALHGTNQRFIQRLQLMEQFADRPLDEYDLGELELLWQRAKKQLNQ
>NZ_CP007542.1|WP_158506483.1|397398_397539_-|hypothetical-protein
MISIFKNSPQFLTIELSTVTGDRQGQGGNRAILELEKIDDGEIRGN

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Crispr_ID: NZ_CP007542_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007542_2

1018130-1018756

TypeIII

Consensus_repeat	Method
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CRISPRCasFinder
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CRT
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	PILER-CR

8 spacers

WYL,csx3,cas2,cas1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6

The CRISPR arrays of NZ_CP007542_2

>merge|NZ_CP007542|2|1018130-1018756|CRISPRCasFinder,CRT,PILER-CR
GTTTCTAACTAATCTGATTTAATTCCATTGATAGGTTTTCTTAACTATTAATTAAGATTTGACCATTTGTAACCCTTGCTGTTTCCGACTAATCCGATTTAATCCAATCGGTAGGGTAGGGAGTACGTTAGAGGTCTTCACTCTCGCGCCAGACGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGATTAACTTACGGGACAAAGATTAATCCCTTACGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGCGTGCTTAAAGCACCACTAGCAGTCAAAATGATATGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGCGCAGAGGCAATCGAGCGTAAAAGCTCAATTGTGGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGTGCGGAAATTCTACCAGGGGTTTAAGCCGTACACCACGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGGATTTTTGAGCCATGTTGTGGCAATGGGCAGATGGTTCAGGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGGAAGCAGTCGAGCTACACAGTTCCAGGGTAGATCTAAGGTAGAAGTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG

>NZ_CP007542|2|2|1018130-1018756|CRISPRCasFinder
GTTTCTAACTAATCTGATTTAATTCCATTGATAGGT	TTTCTTAACTATTAATTAAGATTTGACCATTTGTAACCCTTGCT
GTTTCCGACTAATCCGATTTAATCCAATCGGTAGGG	TAGGGAGTACGTTAGAGGTCTTCACTCTCGCGCCAGAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	ATTAACTTACGGGACAAAGATTAATCCCTTAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGTGCTTAAAGCACCACTAGCAGTCAAAATGATAT
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGCAGAGGCAATCGAGCGTAAAAGCTCAATTGTG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	TGCGGAAATTCTACCAGGGGTTTAAGCCGTACACCAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	GATTTTTGAGCCATGTTGTGGCAATGGGCAGATGGTTCAG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	AAGCAGTCGAGCTACACAGTTCCAGGGTAGATCTAAGGTAGAA
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG

>NZ_CP007542|2|1|1018130-1018756|CRT
GTTTCTAACTAATCTGATTTAATTCCATTGATAGGT	TTTCTTAACTATTAATTAAGATTTGACCATTTGTAACCCTTGCT
GTTTCCGACTAATCCGATTTAATCCAATCGGTAGGG	TAGGGAGTACGTTAGAGGTCTTCACTCTCGCGCCAGAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	ATTAACTTACGGGACAAAGATTAATCCCTTAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGTGCTTAAAGCACCACTAGCAGTCAAAATGATAT
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGCAGAGGCAATCGAGCGTAAAAGCTCAATTGTG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	TGCGGAAATTCTACCAGGGGTTTAAGCCGTACACCAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	GATTTTTGAGCCATGTTGTGGCAATGGGCAGATGGTTCAG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	AAGCAGTCGAGCTACACAGTTCCAGGGTAGATCTAAGGTAGAA
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG

>NZ_CP007542|2|1|1018210-1018756|PILER-CR
GTTTCCGACTAATCCGATTTAATCCAATCGGTAGGG	TAGGGAGTACGTTAGAGGTCTTCACTCTCGCGCCAGAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	ATTAACTTACGGGACAAAGATTAATCCCTTAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGTGCTTAAAGCACCACTAGCAGTCAAAATGATAT
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	CGCAGAGGCAATCGAGCGTAAAAGCTCAATTGTG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	TGCGGAAATTCTACCAGGGGTTTAAGCCGTACACCAC
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	GATTTTTGAGCCATGTTGTGGCAATGGGCAGATGGTTCAG
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG	AAGCAGTCGAGCTACACAGTTCCAGGGTAGATCTAAGGTAGAA
GTTTCCAACTAATCCGATTTAATCCAATCGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007542.1\|WP_028948933.1\|1022500_1023307_+\|CRISPR-associated-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP007542.1\|WP_028948940.1\|1016729_1017038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948928.1\|1026469_1027546_+\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP007542.1\|WP_038530214.1\|1021446_1022478_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP007542.1\|WP_028948937.1\|1018950_1019229_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007542.1\|WP_028948943.1\|1015354_1015744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948944.1\|1014494_1015088_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|379122
NZ_CP007542.1\|WP_028948929.1\|1025913_1026303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948942.1\|1015762_1016260_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379324
NZ_CP007542.1\|WP_028948938.1\|1017194_1017701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_051738676.1\|1017735_1017993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948946.1\|1011992_1012934_-\|hypothetical-protein	csx3	mkCas0115_csx3_CAS-I:CAS-III	unknown
NZ_CP007542.1\|WP_028948941.1\|1016281_1016695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948939.1\|1017028_1017217_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948931.1\|1023800_1025477_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213662
NZ_CP007542.1\|WP_028948936.1\|1019225_1019615_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP007542.1\|WP_028948930.1\|1025617_1025917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028948945.1\|1013035_1014466_+\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NZ_CP007542.1\|WP_028948935.1\|1019861_1021454_+\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP007542.1\|WP_028948932.1\|1023311_1023707_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007542.1\|WP_028948931.1\|1023800_1025477_+\|hypothetical-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.44434e-07
NZ_CP007542.1\|WP_028948942.1\|1015762_1016260_+\|AAA-family-ATPase	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	3.73256e-18
NZ_CP007542.1\|WP_028948933.1\|1022500_1023307_+\|CRISPR-associated-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.08595e-19
NZ_CP007542.1\|WP_028948935.1\|1019861_1021454_+\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.35892e-22
NZ_CP007542.1\|WP_028948928.1\|1026469_1027546_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.34697e-33
NZ_CP007542.1\|WP_038530214.1\|1021446_1022478_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.38558e-10
NZ_CP007542.1\|WP_028948944.1\|1014494_1015088_+\|HD-domain-containing-protein	gnl\|CDD\|379122	pfam13328, HD_4, HD domain. HD domains are metal dependent phosphohydrolases.	5.42803e-37
NZ_CP007542.1\|WP_028948945.1\|1013035_1014466_+\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	1.88014e-103
NZ_CP007542.1\|WP_028948937.1\|1018950_1019229_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.23012e-33
NZ_CP007542.1\|WP_028948936.1\|1019225_1019615_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.78494e-32

>NZ_CP007542.1|WP_051738676.1|1017735_1017993_+|hypothetical-protein
MVVQVYRATAGEVQKAVANSGIDSAFDYVPVGVGLYVGTKTKPFNLRAVEEQVRAVENQNLGHLLLVYEHLLLHYLCPHWLELTS
>NZ_CP007542.1|WP_028948938.1|1017194_1017701_+|hypothetical-protein
MNLVNITDFDQALALLGLYEQEVMKTSIWGYLAEWPQHPSPPPAKAEPMEENPTKAIAPSPDGESLKIAEVAPTPIPASVPPLPGNVNVDNAENLTVIVNKAPLCPNEPPAIVAVETTAAEPNFDAQREALSVEQEKERRLFYLFVQELEHTGDLRKLPTVLHPPARS
>NZ_CP007542.1|WP_028948939.1|1017028_1017217_+|hypothetical-protein
MGLSFAFSADTQKSYNDRHREKVNRFFQRARMALSAIHDEQQQTLLNPDQPLELEDELGKYN
>NZ_CP007542.1|WP_028948940.1|1016729_1017038_+|hypothetical-protein
MIPKKQGKIQQFKLDRQLLGNDVAFLKQVAPNQYNKTFVEKQPFFFSGDEAIVEVRSGMELVTLATENFLGKLTNGEWEKLGLNGFLVGLSASPVLLPLLWV
>NZ_CP007542.1|WP_028948941.1|1016281_1016695_+|hypothetical-protein
MRYNNKRRMNRIREEKMTTFINNSLFTIQPYWFGRTWVFNAPKLGVMAEPFVAGTNIVLTQLAKKHLGIEPGDGAKFQLIFSAQGFPGLHLSFQRQEPEFNGYWYVSEAKDWAWFSMAMTSFFTNGHPEELHLQVLR
>NZ_CP007542.1|WP_028948942.1|1015762_1016260_+|AAA-family-ATPase
MISVFHVLIGCPTSGKSTLAAYLHQAIPQSQIISTDQIREELFGDASKQENWPLIQAKISVDIQQAIAAGKQIIYDATNAKKAWRSELLHTLEQFNNLQVIGWYLETPLKICYQRNRKRQVPSEVIQTYYHALEQLPPSKDEGFTKLHHIPYDQLESIDFSRLIS
>NZ_CP007542.1|WP_028948943.1|1015354_1015744_+|hypothetical-protein
MNSIFTINPYWTGSTWAFDAEEVGLLGEPFVSGADAILSAIVKRELALETQQGSQFELIFSAEGFPGHHACFERQEAEYGGYWYKVMDADNNYQDLDHGDRGWLCPATLCFFPGGHPEKLYIQVRAINK
>NZ_CP007542.1|WP_028948944.1|1014494_1015088_+|HD-domain-containing-protein
MNPSKFNCPILISRFSNALVLANQLHINQLRKGSQVPYISHLLGVAALVLEMGGNEDEAIAALLHDAVEDQGGEATLKLIREQFGETVAELVLGCSDSQAIPKPPWEERKEKHLTKLRHSSLSVLKISVADTLHNARTIQIDLRRHGQEIWPKFSRGKSGILWYYQNLWEIYQDRNPNPWSMELANIIDDWRYENLK
>NZ_CP007542.1|WP_028948945.1|1013035_1014466_+|TIGR03985-family-CRISPR-associated-protein
MESTFEYSPTVDLLSHLVPRQSLTSHICLSKAVRLWVMLRSIYGHESDPIYCDLGHGFTFLDWRNTFFTDVPGYHQQFDGNSLEHLNPSCHCNKTLHNWLFEGHLREEEQKWHQDFINVCCLENDAPVASFLQSLTWDPKAPANPSKNRIFACVGKTLKNNLNDLVKLGYLDYESKTYYQKEDIAKIYQPPEIKNSSQKNIVIPIIHEDLSEVPGIFQETVGEKQRFFMHVDYAVARKDLDSDLLYQFKEIWQENPFPVVSLEYESISLHRLVKRIIHPVCIYYYQRALYLCGYGQTPKHKDAIDWYNYRLDRIRHCQTLDWSDDAIPNLLKDQQKKPFTPNYIDQQLRKALGFDFYKPQKTMILRFNQEFSEKYIDESFRHETFAKFSNPKALASWQKKQTLSARENQQLNQYLEQWQATDPENPTHSYYRMDYRVDDNNVIMRLRAWGPNVEVLFPLPLRQRMADDSHAMAILY
>NZ_CP007542.1|WP_028948946.1|1011992_1012934_-|hypothetical-protein
MSSYHLRLEGDTLYGAFNRAEPASGDCLVMDAAHGIDAMIQQGVLAGGNLLKIEGPQSVAVAYTLAQRLAPLYGAIAIMDPKACRRGYKVYIVAIRRVKEYPLGSLIEAPIKVSQQISRQIKVAICGFPQVGKSCLIEGIRQVISSQVGAPYPYVIRACPDGEGAWLHQTQVNNPPLAEDLRSQNRGHWSPAFAAMAAGWVRSANETINLTDTGGQPSPENRLIMAEATHGIIIYKTEAEQQQWLEFCQSLPLPIIAMVESRLGHADDKVNLGETITGIVYGLSRGDTQLRDKLMVQALGQRLIELTVHIPPP
>NZ_CP007542.1|WP_028948937.1|1018950_1019229_-|CRISPR-associated-endonuclease-Cas2
MMLYIICYDIPDDRRRKKVADLLEGYGVRVQYSVFECYLSAKKLKELQRRLRKQFNQNEDSIRFYPLSPSMLSQTMVWGSPPLSTPSSSVII
>NZ_CP007542.1|WP_028948936.1|1019225_1019615_-|CRISPR-associated-endonuclease-Cas1
MYLSPRAAFVRNLLDPYQGCLHEGSERHAALASDLIEEFRAPLIDSLVLYLVNNGTLKTDLHFQFHDGGCFLNESGRRCFLQAFVQRMEEEITVDNQLHPRWHLLLRQVKCYKRFVYAPSKGYEPYRIR
>NZ_CP007542.1|WP_028948935.1|1019861_1021454_+|hypothetical-protein
MTSTTYTAVTFAPVQGFIEKSRKLRDLYGSSFLLSYLAKAICNAAKDQNMTVISPALINVTQGTPNQIIIKGNFTKNDAKAALSKSWNYICDTVKQYIEDQLPDFQDQFHWQRNWNYTKSHTWEFFWEQSQVSIEDVRKRLSESKRERDWTGINWQGESSTLSGFDAVAWYGMADKTHPLNHSIPEQTRLIQQFYQQLDDKVQGGILDKTEQLSIPELIKRLITLPDIANLLNNLTPEEIPSVEYPRSFVDLNRKEQSLYTGWFQGDGDNIGKYLADQSRQLEEDIALEKFSRAMMNWGRDLKYYLPPLADPVPKVPERRLPQPLLNKDGRIIYAGGDDFLGVLYRVPPQDKLTAKECLDWLFRFNNNIWSQHKVTITVSIGFVWAAPNIPQRDVLQHCRETEKLAKDNGRDRLAIRILFNSGNHLDWHCPWWFLQKILEDYQDREGKQNWTHFYNDVAVLETRHAFSKDSDQVAKALFNIYFPHCFEDLKRNMLPNNKEYQTPILPDSEPETLNDWVRNLAKVGFQIYA
>NZ_CP007542.1|WP_038530214.1|1021446_1022478_+|CRISPR-associated-protein-Cmr3
MPNKTVSKPFSYLIQVTPLGLLYGSAGRFLSPENLVGRSGNHFPPSSATLSGLYAQQQTAETKEKFTHLQIAGPFWAKEREPQNFFVPTPLNYLVPKEKSEIAYKLSPEFPTTENETIQWLPQDPAKRKAYQEKPDKFSARHWLAIKDWNKAEKVHSSPWKFLPHLHPRLAEDQRRVEQDGDQGSLFLENSVQLGPDVCLIYLTNHPLEDGWYRFGGEGHMVDIRSLELDGKTQELLNEPVGEKFALITSAVWGSNRFSERFPEQWSVKALLTDRASPFRYRLGGTGKTKRLSRGRHTVPAGTVYVLEEPIDQPWHDWSEEWFPKEGYSFNRWGCGLALPIAV
>NZ_CP007542.1|WP_028948933.1|1022500_1023307_+|CRISPR-associated-protein-Cmr4
MYHKAYGIIETLAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRSDNPDATRTWYGHEAVTGQTDGRTTEAIVKFEYASLVWLPVFCPGQPVVWISCPRLLKRYSFLTGISATVPKPYTGSTNLKARAVGSKKILFFNLGFMEIEHSQDMSPWVPAGTTLDEANLVVVGDNDIAQLHDMALYRQSRVKLADDMKKVEGGAFFNVEALPEGSVLIFPIALKEKGWQPFGQSTTQDLYFGGLESIGFGHTSVTLGGDL
>NZ_CP007542.1|WP_028948932.1|1023311_1023707_+|hypothetical-protein
MAWKTYDLDQQAQNLVLTAKKRNSDSLNQAYKMRMAIAYGLERFWGEQLRLAKQDPDKAAFWKDTWAALVKIVDKAGITLPNDAVKADNTQAVQAMSEKLWKIPLEDQRVILAVLAQLCDAIVWWTQRYKD
>NZ_CP007542.1|WP_028948931.1|1023800_1025477_+|hypothetical-protein
MVNITDPHTKIPMMFRAQVGGRCQLNYINNKDDSDIDRWAKEWVERADDIPPQFSAQVQTKTYEIGWRFVTNGGQDDGVIRPVMGAQGVPFYPGSSMKGAFRRVCNLSQRERYCGKQTSSKDMEPGILRFHGGYPTDKSWQEKLVDIVHPQQGWQVQSSERPGSAFALMSLYQPELRFGISSTITLPEEEWDIIWQLWEKALTTGIGCRVSAGYGQPKTSAVKPLYQTQLKGQGIAPKLLDGSAEFRPNIFRAAIRGHALRIFGGLTNAENAEKAVGQLFGDTQRDGGVVGLLTMGFETTELELGTFGQGTWKVPTYEVEGKLNWFLTQKSLPLDHQKALLNLIAYLTRFAMILGGFGRSWRRVDHRLFYEEYYNPGPKGLIGCQWEWQGTQALMRDVKVRRPEHLSKFLAEVQTIASTWLELKGFPVNPNNYARNWREAWHPEKVKIFGCLTDGDYSEAIEWFHGPYREANSSLGTTQGSIYRTSVTGRMSQIGRIWHRMYPVVKVIPDPAAPNGRAPQETANYLEFLTIFPDDSPASRDFVDFLTAHEKFQLLWPN
>NZ_CP007542.1|WP_028948930.1|1025617_1025917_+|hypothetical-protein
MNTLEKLELLKENCVDQSELDRILGQLLQVMLTRYYQKLSVYNADIEKFEQEYNLNSDEFEQQFDSGELDDEMNFFEWFGLCQLRKEVSHKIEKLQQVL
>NZ_CP007542.1|WP_028948929.1|1025913_1026303_+|hypothetical-protein
MRNADDYLAWIKSVIALCPVVVDLSLIREETLADRGLWRYRLTLSDESLLELFEFFTIKFDKINAIKYSFHWQTKDGQLIKRWDNAAHHHEIITYPHHLHDGIKNLVFPHEPVDIQEILSMISAQITSS
>NZ_CP007542.1|WP_028948928.1|1026469_1027546_+|putative-CRISPR-associated-protein
MKLLITTTGTSLLTNAAKQYGKNKAEITDNELRHYFEIAGSEAASAETNSLLKIVEPNDFVSLLHTATPDGSRCAQQIKNYLQSNGWNNVSLRQLELEENESQFERHGLRNLVNTLIDEITTGQREGKDVMINATGGFKAQIAYTTMVGTIFQIPVKYIYQNFQKPVTFPPLPITWNLGLLIQYDHFFTWIDEEPRSMQLVWQRLQSIQPSDRIAIEQLLLFPNENDNSNEIFLSAAGDILWQRVQQQRQIPVGEPPPSDIPTVDKISNSLTRVRHHYPRGTREFAETVASLSAVEEIIGGHFENTTNRRIKNVFDDGTIRVLWADNEKATNLTIRTTARGQAQTLQFAERFIKPLLQ

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Crispr_ID: NZ_CP007542_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007542_3

2728884-2728991

Orphan

Consensus_repeat	Method
GAGCTAAAAGCATCTTTGGTAAAGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007542_3

>merge|NZ_CP007542|3|2728884-2728991|CRISPRCasFinder
GAGCTAAAAGCATCTTTGGTAAAGACTTTGGTTGTCTTAATCTTACTTTAATTGACTATAATTGAAAGTAAGACACTGACCGGAGCTAAAAGCCTCTTTGGTAAAGAC

>NZ_CP007542|3|3|2728884-2728991|CRISPRCasFinder
GAGCTAAAAGCATCTTTGGTAAAGAC	TTTGGTTGTCTTAATCTTACTTTAATTGACTATAATTGAAAGTAAGACACTGACCG
GAGCTAAAAGCCTCTTTGGTAAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007542.1\|WP_028947325.1\|2732053_2733415_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP007542.1\|WP_028947326.1\|2730880_2731957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376264
NZ_CP007542.1\|WP_028947337.1\|2720546_2720741_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|223286
NZ_CP007542.1\|WP_028947320.1\|2737621_2738356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028947332.1\|2724585_2725140_-\|cofactor-assembly-of-complex-C-subunit-B	unknown	unknown	gnl\|CDD\|371864
NZ_CP007542.1\|WP_028947329.1\|2726345_2727512_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|273473
NZ_CP007542.1\|WP_028947318.1\|2741049_2741955_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP007542.1\|WP_028947330.1\|2725769_2726279_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP007542.1\|WP_028947336.1\|2720964_2721780_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP007542.1\|WP_028947323.1\|2734214_2736038_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP007542.1\|WP_081857659.1\|2725169_2725562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028947335.1\|2721792_2722557_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_CP007542.1\|WP_028947322.1\|2736078_2736708_-\|CPP1-like-family-protein	unknown	unknown	gnl\|CDD\|371751
NZ_CP007542.1\|WP_028947334.1\|2722652_2723585_+\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|212494
NZ_CP007542.1\|WP_028947328.1\|2727702_2728740_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|177082
NZ_CP007542.1\|WP_028947324.1\|2733740_2734202_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_038530904.1\|2723679_2724396_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP007542.1\|WP_028947321.1\|2736894_2737503_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|184807
NZ_CP007542.1\|WP_028947327.1\|2729033_2730734_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NZ_CP007542.1\|WP_028947319.1\|2738440_2740363_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668

Protein	Function_ID	Function_description	E-value
NZ_CP007542.1\|WP_028947325.1\|2732053_2733415_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.55597e-101
NZ_CP007542.1\|WP_028947326.1\|2730880_2731957_+\|hypothetical-protein	gnl\|CDD\|376264	pfam18845, baeRF_family3, Bacterial archaeo-eukaryotic release factor family 3. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome.	1.91648e-45
NZ_CP007542.1\|WP_028947337.1\|2720546_2720741_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|223286	COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism].	1.60486e-13
NZ_CP007542.1\|WP_028947332.1\|2724585_2725140_-\|cofactor-assembly-of-complex-C-subunit-B	gnl\|CDD\|371864	pfam12046, CCB1, Cofactor assembly of complex C subunit B. Cofactor maturation pathways such as the CCB system (system IV) for cytochrome c-heme attachment are conserved in all organisms performing oxygenic photosynthesis. The CCB system consists of four protein, CCB1-4. The four CCBs are well conserved between green algae and plants.	1.09786e-74
NZ_CP007542.1\|WP_038530904.1\|2723679_2724396_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.90597e-10
NZ_CP007542.1\|WP_028947318.1\|2741049_2741955_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	5.66919e-161
NZ_CP007542.1\|WP_028947330.1\|2725769_2726279_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.60968e-11
NZ_CP007542.1\|WP_028947336.1\|2720964_2721780_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.20313e-62
NZ_CP007542.1\|WP_028947323.1\|2734214_2736038_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	4.70851e-171
NZ_CP007542.1\|WP_028947335.1\|2721792_2722557_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	3.10147e-113
NZ_CP007542.1\|WP_028947322.1\|2736078_2736708_-\|CPP1-like-family-protein	gnl\|CDD\|371751	pfam11833, CPP1-like, Protein CHAPERONE-LIKE PROTEIN OF POR1-like. This entry includes proteins from bacteria and eukaryotes. The plant member, CHAPERONE-LIKE PROTEIN OF POR1 (CPP1), is an essential protein for chloroplast development, plays a role in the regulation of POR (light-dependent protochlorophyllide oxidoreductase) stability and function.	6.21234e-77
NZ_CP007542.1\|WP_028947334.1\|2722652_2723585_+\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|212494	cd08946, SDR_e, extended (e) SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.65975e-54
NZ_CP007542.1\|WP_028947329.1\|2726345_2727512_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|273473	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	3.41313e-172
NZ_CP007542.1\|WP_028947328.1\|2727702_2728740_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|177082	CHL00180, rbcR, LysR transcriptional regulator; Provisional.	0
NZ_CP007542.1\|WP_028947321.1\|2736894_2737503_-\|dephospho-CoA-kinase	gnl\|CDD\|184807	PRK14730, coaE, dephospho-CoA kinase; Provisional.	9.76131e-100
NZ_CP007542.1\|WP_028947327.1\|2729033_2730734_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	0
NZ_CP007542.1\|WP_028947319.1\|2738440_2740363_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0

>NZ_CP007542.1|WP_028947328.1|2727702_2728740_+|LysR-family-transcriptional-regulator
MSDIPFTLDQLRILKAIATEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQLTEAGHLLLNYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDVTVQLQVHSTRRTAWGVANGQVDLAIIGGEVPAELQETLTVLPYAEDELALILPVFHPLAQAETIQKEDLYKLKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEAIKNAVQSGLGAAFVSTTAIEKELEMNVLHIAPIKNVEIRRVLSVIINPNRYRSKASAAFIREVLPQFSTHPDALDPERLLTNPYSTANGDRQTDNKDSKGGIEIDPVT
>NZ_CP007542.1|WP_028947329.1|2726345_2727512_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
METKLTTVGVVGGGQLAWMMAQEAPKLGLKLAVQTPQENDPAVALAEKVVLAAIADGEGTKQLAEHCGVITFENEFVDLLSLEKLAQQGVSFYPRLDSLAPLLDKWEQRHFLHSLNLPVPDFWALESLPSPLPAFPWVLKARRHGYDGQGTQIISSPADLPDLGKAPPGSWMVENFVPYERELAVIGARNAKGEVEIYPVVETHQVNQVCRWVVAPAPIDAAVAYKAQDYCRHILDHLDYVGILAIEFFLLPESPQNIAPEQRLLINELAPRTHNSGHFSLDACQTSQFALQLEAVTGKALGSSTLLCGQAVMVNLLGYEISAGDYQQQLERLAALPHSHVHWYGKGECRPGRKLGHVTMLNPNLDPYSSTAWAESTVKQLEAIWYPD
>NZ_CP007542.1|WP_028947330.1|2725769_2726279_+|pentapeptide-repeat-containing-protein
MLKVFRQSIIVVLTLACFLWSAPAIAASSSSVTGGASAFENMVLAETDFRDQDLLTAQFTNVDLTSSIFEAMDLRGSVFNGANLTDANLKGADLTNGLAYLTSFNGANLENAILAEAIMLRTSFKNAKIQGADFSLAVLDSEQVAALCEVADGVNPKTGNSTRESLGCS
>NZ_CP007542.1|WP_081857659.1|2725169_2725562_-|hypothetical-protein
MIRDVFYPFRLSMYYLPQPPYFLIAVGLFVGITCGAAFEATLKQKVKLWLNTPASTLADLDLQLPFLGICLGVCVFLASGVQIFLGNGWISYAISLPITIFIAALVWRQLDSLLKQLKTGGSAAIDLDIF
>NZ_CP007542.1|WP_028947332.1|2724585_2725140_-|cofactor-assembly-of-complex-C-subunit-B
MDVMDLPVLGSTLFFTIFSLIGLVFFIRSSVKDRTQRIQAWIDNPETGILDEIKTHFQNRAYRVTSIDPVQQAIAFEGNVQASPFLAVFLSLLAALGLLCLALVLAVFWPQRGFLFFFLLWLAPIAGIFYWQKAARVEAITLELGDPNQPAHPGQYPLTITAHRDELRELQAQFPLDWQGGSSH
>NZ_CP007542.1|WP_038530904.1|2723679_2724396_-|DUF2993-domain-containing-protein
MGLAVDSNLIGRILAPALRLWLRSQVETVESLELEIDGKDRQILRGYVPRVALSSEKAIYQGLQLGRVLLRGENIRINIGQVIKGKPLQLLEPIRVSGELQVSQRHLQASLTSTLLTSAFGELLVALLTEQGVEDPQGKLENYTFLWQAIALEDQSFQLKGKVQDAQGQSHELLVQARLQLASPKTLRLEDITLLGLPAIANRSLECLTVDLGEDVDLESLDLNNGELFCLGRVLIRP
>NZ_CP007542.1|WP_028947334.1|2722652_2723585_+|NAD-dependent-epimerase/dehydratase
MKILITGGGGYIGSVLTPTLLAAGYEVTVVDNFMFQQNSLAECCQYDGFNVIRGDCRKEDLIKEQLKTADVIIPLAALVGAPLCSRDQIGTKTTNQTAVEMICQLASPQQRILMPVTNSGYGIGEKGKFCTEESPLRPISLYGVTKVEAEKAVLARDNSMTFRLATVFGMAPRMRVDLLVNDFVYRAFYDRAVVIFEGHFKRNYIHIRDVAKVFLHGLENFESMKGKAYNVGLEDANLSKLELCEEIRKYLPNFVYLEAPIGEDPDKRDYIVSNQRILSTGFTPDWSLGRGIQELIKGYTILRNSVYSNV
>NZ_CP007542.1|WP_028947335.1|2721792_2722557_+|ABC-transporter-ATP-binding-protein
MSEVIRLDKVSLYRRTQEEFSYDLKRTVLSFIEGKYRKPSRKLILDNIDFTVVTGEKVGIIGSNGSGKSTLLKVICGILEPSAGSLRVRGEIAPLIELGAGFDPDLCVRDNIILYGVMLGFSRQEMLERVDSILDFAELQSLGDMPVKSLSSGMSARLGFAIATDVEPDILILDEVLSVGDESFKHKSQARMDKLWGHNTTILVVSHSLGFIQDACPTTIWLDRGVVRYMGKTSEAIGQYLEEVKRHDALTIPQ
>NZ_CP007542.1|WP_028947336.1|2720964_2721780_+|ABC-transporter-permease
MALSLPTRVNWSPIQRYLELLQILVERNLKGRYRGSFLGVYWSLLNPLIMTGIYAAIFGAAFASFYGSALNYVLAAFTGLLVINFFSASTSQALSSVVASGGLMNKIKLPISVFPLSMIVANVFQFVVGPLPLLAIVTIYKSWESGWWFVNAISLFFPLLALSLVCTGVGFFVSALYVFFRDLPYFYELVTFMLWIGSPIFYPSEIVPEQVRRFLVINPLLPIIDSIRQISLSGNLPELGLIVHGLLNGLILLALGWLCFRSWQKNFMDLL
>NZ_CP007542.1|WP_028947337.1|2720546_2720741_-|ribonucleoside-diphosphate-reductase
MVVSTVNPTAPMPVTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIK
>NZ_CP007542.1|WP_028947327.1|2729033_2730734_-|AarF/ABC1/UbiB-kinase-family-protein
MPNPKPLPPQSELDNIRRYDAQAIANYYRRRPWKVMGRALEVLWSFGFFLTCLLWDQWTHQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFRLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDPEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGGAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLIDVLFKDGKFQWQRLENMLSIARSDRQFDLLPTAQLGLQFLFSEEGLYLRRQILLALTEDDRLHTDEVQRIWGLVKDDFKPQELVNVAWNAVREFSLAGVSTILPQR
>NZ_CP007542.1|WP_028947326.1|2730880_2731957_+|hypothetical-protein
MINRQDLKQLQSLTPVPALSILLPTHRTSPDNKQDPIVVKNLVSEAKNRLGEEYSQRELEPLLKNLDGLVETIDYNYGLCGLALYVSHDFAKLYYLPFPVQARVVIDKTFATRDLVYGLHRQLQYWVLLLSRGSSRLLAGTGDILEEVVDDYFTLAMTGPGGTEALPADTDSSYRDDRQRRFIQEVDRVFSTYNGAENLPLVVGGVDRLVSFFQEVSQHSAAIAGTLLGNFDRASISELTPQVWEIMQTVREAKQNQALTALDEAVSARKFVSTVGETWRLAQEGRGKLLVVEKGYHEPAILSANGGIELVAEPGGTEVIDDAVDEIIEAVLANGGEVALVEDGTLPQHQRIALVLRY
>NZ_CP007542.1|WP_028947325.1|2732053_2733415_+|(Fe-S)-binding-protein
MSAPPSFTALAQAVNQPEIGFDSQNPPPQAVLDSCVHCGFCLNTCPSYRIIGKETDSPRGRIYLMNGINQGQASLDATTIQHFDSCLGCLACVSACPSGVQYDRLISATRPQVERNYNRPFGDRLLRGIIFNLFPYPWRLRLLLPLLWVYQNCGLQKLVQATGLLSRFFPRLAAMESILPRVTAASFRDNYPTEIPAQGEKRYRVGVILGCVQRLFFSPVNEATVRVLTANGCEVVIPKSQGCCAALPAHQGQTDQAQAIARQMIDSFADTEVDYIVINAAGCGHTLKEYHHILADDAEYLPKAQAFVSKVRDINEFLIEVGLTEDLQPVTTETIPVVYQDACHLIHGQKISLQPRQLIAQIPHLQLREPLDAALCCGSAGVYNMLQPAVAEELGQQKVNNLRQTGARLIISSNPGCSLQIQKHLKKQGHNLGVIHPIQLLDLSIRGEKLTNL
>NZ_CP007542.1|WP_028947324.1|2733740_2734202_+|hypothetical-protein
MSALPKPSFPPRRTAVISPVPTPIANSTRESLPTSLQVLLRFQQVTSCITLGVMATVLGVYGWTVYTPTLWSREYQQLKALQQTERQLITNTEAIKHQLAQEANQPSSGLVKASPSQNIFLPAQPTSVPSAENDVAAVASVANFNLATGPVAY
>NZ_CP007542.1|WP_028947323.1|2734214_2736038_+|penicillin-binding-protein-2
MDSSHLKLNSSKGNSSPFTKHISRQERQKQKSQQQGVPVFRLLLVWGILLLAMGGLAYRLYQLQVVQANRLQRMAKAQQSTSMQPYVPRRSIVDSQGNVLATDRLTYTLFVHPRYFEATKEITNPTDYIARELATILGDVTPEQLKEKFKEKESGIKLATGLNESQAVRIGALRMGGVDLEKQYSRYYPQDEMAADIVGYVDGEHQGQAGLELSQREILEREVETYAIRRTGKGVVLPDSLPDNLLQSNDWQLQLTIDMRLQRAARELLKAQVSQQKAKRGTVLVMDAQDGAILAMVNEPTFNPNEYYKARVEYFKNWAVSDLYEPGSTFKPVIVALAMNEGAVKPKDRLNDSGSIRVGPWTISNASKSGAGLITVTEAIRYSSNVVMVAIARRLKPERYYELLQEVGLDSRTGIDLPGEATNYLKPRQSFMDDPIEQATTSFGQGLSLTPIKLLQLNAMLANGGKLVTPHVVKGLVDARNHLHWQPDHPIKQVVKPEVAHSVVQMMESVVSGDGGTGKAALIPGYRVGGKTGTAQKAGPRGGYLANAKITSFVSVLPVDNPRYVVVAIIDEPKGANAYGGTVAAPVVKSVMEALIAIKGIPPSQAK
>NZ_CP007542.1|WP_028947322.1|2736078_2736708_-|CPP1-like-family-protein
MGEQTPYQMLGISEEATFEDIQAVKVRLLREYEGNTQLLEEVEAAYDAIIMERLRLRQEGKIKVPEKIRFPERQAESTGNGFPSIPAPTAPSWLANSLDTPSQNDILWPAAFFAGLILVSWFTQGAGGSIQSLLLVVGVFGNIFFLNRKQRKFGKALLLSLGALLVGIILGTVLGQLLLSANVAIGSNQEQISATITFIILWLISSFVR
>NZ_CP007542.1|WP_028947321.1|2736894_2737503_-|dephospho-CoA-kinase
MDNEPPRQRLIGLTGGIATGKTTVTDYLHQKYSAPILDADLYAHQAVEAGSAILTAIAERYGPEILDQQGQLRRQALGEIIFPNTQEKQWLESQIHPFVKQRFRSALTELQKKQIVVLSIPLLFEAQLTDWVTDIWVVTCEPAQQVQRLMQRNSLTEEQALARITSQMPLAEKVAQADVVLDNSGQIADLEQQIIKAWQSLL
>NZ_CP007542.1|WP_028947320.1|2737621_2738356_-|hypothetical-protein
MSTVIPTPQESVTLPNEILEISISIAVKELDPSLVNEQFLKFSGIVPNEWELNQQPVVSKAGSQLVFKNGLSIVAQPRSLMFLEGMNDKTAEVVTVGKVASAFVEKLPNAHYNGVVVTPKCLIPLPNQNDGARKFITGTLLASGAWQDLGKAPVQAAVEFTYLLEGCQFNLKVNQATLQIPDRQAVSALLFTGNFNYSLNNPNPQERVNVAKQYIEAWQSDLDTFRGIVHEKFLAEQQPQTVFG
>NZ_CP007542.1|WP_028947319.1|2738440_2740363_-|ribonuclease-J
MAKNTQPQALKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFPTDDMHGVNVVLPDMTYLRENREKIKGMVVTHGHEDHIGGIAYHLKQFDIPIIYGPRLAMALLRDKLEEAGMLERTNLQTVSPREMVRLGKSFVVEFIRNTHSIADSYCLAIHTPLGVVMHSGDFKIDHTPIDGEFFDLQKVAEYGEKGVLCLLSDSTNAEVPGITPSEASVIPNLDRVFSQAEGRLMVTTFASSVHRVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKCPDNLFVPLKAARNLPDQQQLILTTGSQGEPLAAMTRISNGEHPQIKIRQGDTVVFSANPIPGNTIAVVNTIDRLMMQGANVIYGKHQGIHVSGHASQEEHKMLLALTRPKFFVPVHGEHRMLVKHSQMAQAQGIPSENIVIVNNGDVIELTGDRIRVAGQVPSGIELVDQAGIVHESTMAERQQMAEDGLVTVATALSKTGKLLAYPEVHCRGVVMTIQPKLLEELIVRTIENFLTERWSEFTHGSNGSTEVSWNALQKELESSLQRLIKRELQSSPMVLLMLQTDTPIELDQVPQSVSTVGVASTTPAPRKKVVLTKTAEPKVKAKPEKKVVTTAEPSVQPVSTTKVYRRSRKRSTTSVSS
>NZ_CP007542.1|WP_028947318.1|2741049_2741955_-|4-hydroxy-tetrahydrodipicolinate-synthase
MADFVNASPFGPILTAMITPFNAEGGVDYGVAEKLADHLITHGSDGLVVCGTTGESPTLSWEEEHELFRVIKQTVGDRGSVIAGTGSNCTREAMEATQIAAKLGVDGSLQVVPYYNKPPQEGLLAHFQAIASCAPELPLMLYNIPGRTGQSLAPETVYRLAEVENIVAIKEATGSLEQASLIRVHTPDDFAIYAGDDVLTLPMLAVGGAGVVSVASHLVGDRLQTMVRHFAQGATNQALEIHLQLIPLFKILFCATNPIPVKTALGLQGWSVGSLRPPLCALSPSQIEQLQTVLENLALLS

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Crispr_ID: NZ_CP007542_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007542_4

3136522-3136681

Orphan

Consensus_repeat	Method
ATCACCGTATAGGAGATCATCGCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP007542_4

>merge|NZ_CP007542|4|3136522-3136681|CRISPRCasFinder
ACCACCGTATAGGGTGTCATTGCCAGCCTCACCGAACACACTGTCGTTCCCTAGATCACCGTATAGGAGATCATCGCCCTCTCCGCCATAGACAGTATCATTGTCCTTGCCTCCCCTGACGGTATCATTACCTATATCACCGTATAGGAGGTCATCGCCC

>NZ_CP007542|4|4|3136522-3136681|CRISPRCasFinder
ACCACCGTATAGGGTGTCATTGCCA	GCCTCACCGAACACACTGTCGTTCCCTAG
ATCACCGTATAGGAGATCATCGCCC	TCTCCGCCATAGACAGTATCATTGTCCTTGCCTCCCCTGACGGTATCATTACCTAT
ATCACCGTATAGGAGGTCATCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007542.1\|WP_038531035.1\|3142842_3143244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028946990.1\|3143325_3144636_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|227946
NZ_CP007542.1\|WP_028946997.1\|3131569_3133255_+\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|368297
NZ_CP007542.1\|WP_028946985.1\|3152123_3152321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028946992.1\|3138186_3142185_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|237117
NZ_CP007542.1\|WP_028946986.1\|3150410_3151943_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP007542.1\|WP_028946991.1\|3142242_3142809_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028946988.1\|3148244_3149153_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP007542.1\|WP_028946994.1\|3135132_3135933_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP007542.1\|WP_028946999.1\|3125578_3128698_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_CP007542.1\|WP_051738889.1\|3129419_3131363_-\|PP2C-family-protein-serine/threonine-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP007542.1\|WP_028947000.1\|3124939_3125449_+\|allophycocyanin-subunit-beta	unknown	unknown	gnl\|CDD\|273559
NZ_CP007542.1\|WP_028946996.1\|3133389_3134214_-\|photosystem-II-manganese-stabilizing-polypeptide	unknown	unknown	gnl\|CDD\|366770
NZ_CP007542.1\|WP_028946987.1\|3149364_3150321_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|275035
NZ_CP007542.1\|WP_051738890.1\|3134480_3134816_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007542.1\|WP_028947002.1\|3122799_3123378_-\|DUF3782-domain-containing-protein	unknown	unknown	gnl\|CDD\|372238
NZ_CP007542.1\|WP_028946989.1\|3145047_3145521_+\|nitrate-reductase-maturation-protein-NarM	unknown	unknown	gnl\|CDD\|378232
NZ_CP007542.1\|WP_028947001.1\|3123530_3124730_+\|chromate-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP007542.1\|WP_028946984.1\|3152381_3152945_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP007542.1\|WP_028946998.1\|3128802_3129399_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759

Protein	Function_ID	Function_description	E-value
NZ_CP007542.1\|WP_028946990.1\|3143325_3144636_-\|IS701-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	7.8793e-105
NZ_CP007542.1\|WP_028946997.1\|3131569_3133255_+\|DUF697-domain-containing-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	3.2584e-59
NZ_CP007542.1\|WP_028946992.1\|3138186_3142185_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|237117	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.	0
NZ_CP007542.1\|WP_028946986.1\|3150410_3151943_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP007542.1\|WP_028946988.1\|3148244_3149153_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	3.70586e-38
NZ_CP007542.1\|WP_028946994.1\|3135132_3135933_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	7.39993e-18
NZ_CP007542.1\|WP_028947000.1\|3124939_3125449_+\|allophycocyanin-subunit-beta	gnl\|CDD\|273559	TIGR01337, Allophycocyanin_subunit_beta-18, allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains. [Energy metabolism, Photosynthesis].	1.66296e-97
NZ_CP007542.1\|WP_051738889.1\|3129419_3131363_-\|PP2C-family-protein-serine/threonine-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	7.31768e-86
NZ_CP007542.1\|WP_028946984.1\|3152381_3152945_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.20572e-78
NZ_CP007542.1\|WP_028946996.1\|3133389_3134214_-\|photosystem-II-manganese-stabilizing-polypeptide	gnl\|CDD\|366770	pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.	2.86897e-149
NZ_CP007542.1\|WP_028946987.1\|3149364_3150321_+\|glycosyltransferase	gnl\|CDD\|275035	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family. Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers.	3.64542e-56
NZ_CP007542.1\|WP_028946999.1\|3125578_3128698_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	2.82554e-142
NZ_CP007542.1\|WP_028947002.1\|3122799_3123378_-\|DUF3782-domain-containing-protein	gnl\|CDD\|372238	pfam12644, DUF3782, Protein of unknown function (DUF3782). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.	0.00408247
NZ_CP007542.1\|WP_028946989.1\|3145047_3145521_+\|nitrate-reductase-maturation-protein-NarM	gnl\|CDD\|378232	pfam09655, Nitr_red_assoc, Conserved nitrate reductase-associated protein (Nitr_red_assoc). Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.	1.43103e-76
NZ_CP007542.1\|WP_028947001.1\|3123530_3124730_+\|chromate-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	9.42108e-129
NZ_CP007542.1\|WP_028946998.1\|3128802_3129399_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.14813e-19

>NZ_CP007542.1|WP_028946994.1|3135132_3135933_+|DUF2993-domain-containing-protein
MEWFAIALSTFLTFLAPINFIGDQVIANQIRQRVHRVEDLSVRVDNAPNYQLIQGKIQRVRLASRGLEILPSLRIEQLQLETDPIDVDLQALRENRNLPGLRQALRQPFQGAAELVLTEADVNKALQNPTVKERLQKQIDQRVPADVPRFQLLNAQVDFLEGDRLGINLELGQQLEPNAELEKLAIAIETGISIQNGDRLILVDPSAILNGRRINTNVLSSIIGSFSDNLSLKRLENRGITARILRYDISPDEFSFSAFGSIAPEK
>NZ_CP007542.1|WP_051738890.1|3134480_3134816_+|hypothetical-protein
MESINQKLSLTPELEALIATTEALAENYQDDHDRLLQLLRVLESLHRRIRIDYFEPALPNTRRGLYGLLRDIEESGGWPYIERGKLTHFIKNLQESLEQEVESLGELEELD
>NZ_CP007542.1|WP_028946996.1|3133389_3134214_-|photosystem-II-manganese-stabilizing-polypeptide
MRFRPSIMALLSVCFGLLTFFYSGSAFAVDKSQLTYDDILNTGLANVCPEISSFTRGTIEVEPNSKYFVSDFCMEPQEYFVKEEPVNKRQKPEYVKGKVLTRQTTSLEQIRGTIAVAADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAADNFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTDA
>NZ_CP007542.1|WP_028946997.1|3131569_3133255_+|DUF697-domain-containing-protein
MPLPRLLTIVLAVSFILGMVIWLIDAILRLYSQVAWTSPFLANIVILLIIGVLTLLIATFFYYFNLANQPKDSAGKKRRRIKLPEQKTETAAANLQAVRRQMQQIQDQVAQRALLEKTRLIEAQLKRGNLNLVVFGTGAAGKTSLVNALLGQIQGEVAPTMGTTTAGEKYYLYLDGVSRDLEITDTPGILEAGVRGTERETAARQLATEADLLLFVVDNDLRQSEYEPLRALAKIGKRSLLILNKADLYPPEEVEILLQTLRQRVKGFIPPEDVVAIAARPQDVAIQPGLMMRPDPEIEPLVKRLVAVLRSDGDDLMADNILLQSQRLGDEARQIIEQQRQREAMKIIDRYQWIGAGAIAVTPLPVIDLLATTAINAQMVVEIGRVYGCEIDGDRGKELAISLGKTFVGLGIVKGAVELMAQAMQLQLTTYIIGKAIQGITAGYLTRIAGKSFIQYFRQDQDWGDGGVAEVVQQQFQLSRKDEFIQAFVQQAIAKVVEPLEDFWVKETVDSPPEQLEPLPELENLIALEEELIEATPPEPEVYRTRYADWDSPPPQRQDDW
>NZ_CP007542.1|WP_051738889.1|3129419_3131363_-|PP2C-family-protein-serine/threonine-phosphatase
MEPVTLGQRVLKPAVGLINRLHYPQKFALISVCFLLPLGLAIFLLLSEIQGQIQFAQLERQGLAYLNPLQQLQQTVLMQPLTSLGSAHWQTPMDQLDQAQARWGEQLATATDYGDLEQALATVGEIRKQETLEHILQAIAVLRAKVGNQSNLILDPDLDSYYLMEALLLKLPQIQTDLAHLGDIIATHRGSGLSPGEESQLLVIKAQLDQLRTSLVNNLGVAFSHNANEQLQPRVDSGLNGLATALEALDQSLTRVITGQIKLDDPGLSQRSQWSLLNSLQFWRVLSPELDQLLSQRIQRFQQRQWLLSTFVLATLAIAVYLFWGFYASVMATIASLSSAAEKMVAGRETKAVELQTQDEMAEVVHAFNTVADALCCLTEKLQDENLRLEAEIDITRQLQQMLMPSEQELAAVAGLEIAGFMEPATEVGGDYYDVLQTNGQVRISIGDVTGHDLESSLVMIMAQTALRTLLEHGVTDPVKLLSAMNRTIYENTRRMGSSKNMTLSLLQYEAGLIRLSGQHEEVLIIRSTGETEQIDTFELGFPLGLEQDISAFVTEREISLNSGDLAVLYTDGITEAMNGQREFYGIERLQTVLSLYRHQTPEEIRHQAIADLKHFLGDQPAEDDVTLLILKQKSSSEESVGRQHHC
>NZ_CP007542.1|WP_028946998.1|3128802_3129399_+|rhomboid-family-intramembrane-serine-protease
MSQSTKTPLRATLQNQFSIIVSFLAIFWLLEILDAFVFQGSLDQFGIYPRSLEGLRGILFAPFLHADFGHLIANSVPFVVLAWLVMLQEVSDFWIVTIITMAVGGLGVWLIAPPNTVTVGASILIFGYLGFLLLRGWFQKNLASIVLSIVVLVLYGSALWGLLPGRPGVSWQGHLFGFIGGAIAAWLIAREKHYYGKN
>NZ_CP007542.1|WP_028946999.1|3125578_3128698_-|DEAD/DEAH-box-helicase
MATIHGNWQPSHGENSGKLFLWADTWGTPLPETVGDRHPFALDPPALVQTWSNVPLAFPPEDKVTEQTLTLHLPSHRQQKTSLPFVTGQDPVAMDAKYLHWRSWQVTGVNLTPSQTLTLLQSLPLGGQALANLGSEFYFYGQLQRWCLDLVLRGKFVPGLEQRGEDGNYYAQWIPILDSIQDQTHLAQFSQRVPACALANLAGPQETQMLVVDLLQQLLQAQIGTVSPSLANVKEAWLNDWLRGLTHGGQTSLGYGKALQRLATSLDHWYLPVQNYLGRKNNQALAQRQWRGALRLQPPVDDAEGTWRLDYGLQALDDGEFWLPAASLWAMAGDRLVWQGRRVDQGAESLLRGLGVAAQIYEPIAKSLTERCPTGCGLDAIQAYEFILAIAHQLRDRGLGVILPPGLERGGTAKRLGVKVVGEVQRQRGQRLTLQSLINYDLQLVMGSGDNARLLTAKDFEALLAQKSPLVVLDGEWITLQPADVRAAKAILQQQQSASPLTVEDALRLSIGDLQTVSKLPVTQFAARGILQELIDTLRNPEGVKAIATPPGFQGTLRPYQARGVGWLAFLERWGLGACLADDMGLGKTPQLLAFLLHLAAEDMLVKPVLIVCPTSVLSNWCHEINKFAPQLQTVLHHGDRRKKGQPLVKQVKDQQIVLTSYALLQRDFSSLKLVDWQGIVLDEAQNIKNPQAKQSQAARQLPAGFRIALTGTPVENRLTELWSILEFLNPGFLGNQSFFQRRFANPIEKFGDRQSLLILRNLVRPFILRRLKTDQTIIQDLPEKQEMTVFCDLSQEQAGLYQQLVEESLTAIADSEGIQRHGLVLTLLTKLKQVCNHPDLLLKKTKITHGHHSGKLIRLAEMLEEIISEGDRALIFTQFASWGHLLKPYLEKYFNQEVLYLHGGTPAAQRQALVERFQQDPHSPHLFILSLKAGGTGLNLTRANHVFHVDRWWNPAVENQATDRAFRIGQTRNVQVHKFVCTGTLEEKINAMMADKQQLAEQTVDAGENWLTRLDTDKLRQLLTLSATPVDYQAEASD
>NZ_CP007542.1|WP_028947000.1|3124939_3125449_+|allophycocyanin-subunit-beta
MRDAVTTLIKNYDLTGRYLDRNAMDELKAYFESGSARIAAAAMINANSATIVKRAAAQLFEEIPELIRPSGNAYTTRRFSACLRDMDYYLRYASYALIAGDNNVLDERVLQGLRETYNSLGVPIGPTVRGIQIMKEMIEAMAEDSNLRTADFIASPFDHMTRELSEVSV
>NZ_CP007542.1|WP_028947001.1|3123530_3124730_+|chromate-transporter
MSNEPPMETLEADYGTLTPLQKRQRLQELGLLFFRLGLFSFGGPAAHTAMMEEEVVRRRQWLSHGKFLDLIGVTNLIPGPNSTELAIHLGYERGKWAGLIIAGVSFILPAMVVVWLLAIAYVHYQSVPAVGNMLYGIQPMIIPLIGQALWKLGQKALKTPLAIGAAVLVMVGTVWGKPEILLLLLAGLALVLIQMGRGRFQSLPLIFLPLGQLNASPVLAVSGINAWSVFGIFLKIGCLLYGGGYVLFAFLQADLVDRLGWLTSQQLLDAIAIGQITPGPLFTTATFIGYLLAGNPGAIAATVGIFLPSFLLVALVNPWVNVLQKSLIFRAFLDGINAGAWGLMVVTTVGLARSALIDPLTICLALLGAIALGRFSISSHWLVVFGALVGLVRQSIPIS
>NZ_CP007542.1|WP_028947002.1|3122799_3123378_-|DUF3782-domain-containing-protein
MATTADEVWQLLAELVQTQKETERLMREKSQETDRRFQETDRQIQELGKQIGGLGKKFGSFTEGLALPSMETILYEKFAMEVVTPSVRASKQGKHIELDVMAYANGDVKTAIVVEVKSHARPESIGQLINHLQRFREFFPEHQDKKLYGILAAVDLSNALREEVLKAGLYAARIRDEIFELDTPATFQPRVW
>NZ_CP007542.1|WP_028946992.1|3138186_3142185_+|magnesium-chelatase-subunit-H
MFTNVKSTIRRVDPEALNGRKLLRVVYVVLESQYQSALSAAVRNINRTNSSLAIQLTGYLIEELRDPENYANFKHDVSEANLFIASLIFIEDLADKVVEAVTPYRDQLDAAIVFPSMPQVMRLNKMGSFSMAQLGQSKSAIAQFMKKRKENSSGAGFQDAMLKLLRTLPTVLKYLPVEKAQDARNFMLSFQYWLGGSQENLENFLLMLTDKYVYPDLGLDKLVNYQEPVVYPDMGIWHPLSMQMFENVTDYLNWYNQRSDINDDLKDPLAPCIGLIMQRTHLVTGDDAHYVGMVQELEAMGARVICVFSGGLDFSKPVNEYFWDKSVNGVEPLPIVDAVVSLTGFALVGGPARQDHPKAIESLKKLNRPYMCALPLVFQTTEEWEASDLGLHPIQVALQIAIPELDGAIEPIILSGRDGSTGRAIALQDRLEAIAQRAMKWANLRKKPKLDKKVAITVFSFPPDKGNVGTAAYLDVFGSIYEVMKGLQGNGYDVQDLPGSAKELMEAVIHDAQAQYNSPELNIAYRMSVEQYERLTPYSVRLEENWGKPPGHLNSDGQNLLVYGKEFGNVFIGVQPTFGYEGDPMRLLFSRSASPHHGFAAYYTYLNHIWKADAVLHFGTHGSLEFMPGKQMGMSGECYPDNLIGTIPNLYYYAANNPSEATIAKRRGYASTISYLTPPAENAGLYKGLQELNELIGSYQTLKDSGRGIQIVNTIMDQARICNLDQDVNLPDINAEEMTAEQRDTIVGSVYRKLMEIESRLLPCGLHVIGQPPTAEEAIATLVNIASLDREEEGIWALPTLIAESIGRNMEEIYRNSDKGILTDVELLQDITLATRAAVAALVQEQINADGRVSFVSKLNFFKIGKKAPWVKSLCDSGYSNVNEDKLKPLFEYLEFCLEQVCADNEFGGLLQALEGEYVLPGPGGDPIRNPNVLPTGKNIHALDPQSIPTLAAVQSAKVVVDRLLERQRAENGGNYPETIASVLWGTDNIKTYGESLAQIMWMLGAKPVPDALGRVNKIELVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDQAVKLAAEADEPLEMNFVRKHALEQAEEMGIGVREAATRIFSNASGSYSSNVNLAVENSSWEDESELQEMYLKRKSFAFNSDNPGMMDQNRDMFERALKTADATFQNLDSSEISLTDVSHYFDSDPTKLIATLRDDGKAPAAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSHGYEGVRELSKRLVNTMGWSATAGAVDNWVYEDANSTFIKDEEMCKRLMDLNPNSFRRMVSTLLEVNGRGYWETSDENLERLQELYQEVEDRIEGVVE
>NZ_CP007542.1|WP_028946991.1|3142242_3142809_+|hypothetical-protein
MKNTFRGVIWSSFNAINGWFLGASGILIGVVLIRFPFSMPIPLDLVLVVGLFTLLAFMVLINALNISLQEYHKLEKRNIPRILTAFKEQNTDSINCLLEYSEIFSHDMMVSVYYTNQDDIEVLIATGFVKNVQDNGKIMIKLNNLETGQKEILEKLSSNDKSIIGRTIIKPGIPQKIFNQLLFDNQFS
>NZ_CP007542.1|WP_038531035.1|3142842_3143244_+|hypothetical-protein
MEITSQTPLESPKGTFPAKVAKIIDDSKLVINRGRSHGIRKAQRVLVYCIDDDEIKDPDTGESLGFLEVVKGTGAVISVQENLATIQSDQEKTYTREFRNLYSQLPIMGGEVIRESRIIPFDNPQVGDFVKPI
>NZ_CP007542.1|WP_028946990.1|3143325_3144636_-|IS701-family-transposase
MTEAREAKKTVRCVDTYSELYKDIFPEVRFYEAFKYMIVVILSDTKRKSLPAIASSVGLENEQGLLHFVTDSPWESKELEARRLNIILKVIEGREKVVIIDETGDKKKGKGTDYVERQYIENLGKIENGIVSVNAYGYCDGMTLPLKLKVFKPKGRLKEGDKYKTKPELAIEIIEELKESGFKIKRVVSDSLYGESHGTFVSSLEKLKIEYAVGILSNHGVWLPKGAKVRANRWRKFDHIRWDDKQEDRYIREIIYGKRMLIRYWEIKTEKENKENKEGWFVMTKVPEIKYKDVGKIYGIREWIEYGFKQRKSELGWADFRVTHYEQIQKWWETITCAYCMICLYDEKFNPLVEPMPKSHGMHKKWNGEKGWKNWLNNIRLVTSVLNVINFIKDWVGVFSVTHLLEKLVKLFAKVDRLDRLKTLVSLWDIFCYSSA
>NZ_CP007542.1|WP_028946989.1|3145047_3145521_+|nitrate-reductase-maturation-protein-NarM
MFFQFEADFVDSLRCIPMVVRYKLDTCGVKLKLGHWHQLSLEQRQYLTEANCETPAEITQYGEKLQTWVTELTGQPASTLAVSALPDWLNPHQIPNQILTELTNKLPSVQSPGITLTQWQSLTPLQRFALIKLSPAGHENRNFLSALEEFGLTSNYP
>NZ_CP007542.1|WP_028946988.1|3148244_3149153_+|FkbM-family-methyltransferase
MQKFFKQLRRKLFGLDEQEAAMLRAIADTNDLIAGLQKSFDHLHLDYSRALVEIVAQGQPQTTLSCEINGVLLRVPVGILRAYAHCLETSQEFSFTYCIESHCVHWLGQHLRPGDVFLDVGAAYGVISIPLAEIVGNTGRIYAFEPARQTRQSLEQIIKGNHLENITVLPLAIADETGEAEFIEYSTDNRFSWAADTSTLAKDVEPSLDNYATYAVEISTIDKFTEENKVRPKAIKIDIEGFELYALQGAMETLKTCRPYLCIDIHADVKTKQSALLGVQPLLEDLGYRCDSDGHTLFASPV
>NZ_CP007542.1|WP_028946987.1|3149364_3150321_+|glycosyltransferase
MSTYFSSAYRLAVLVPCRNEALTIAQVVTDFRQQLPDATIYVYDNCSTDDTATIARQAGAIVRYERQPGKGNVIRRMFADIEADIYILVDGDHTYEAAAVGRLIDRLVNEQLDMVVGARRSEVKDKEAYRFGHRSGNQLLKGIVELQFGARLDDMLSGYRIFSRRFVKCFPAISNGFEIETELTIHTLELRLPFAEEPVLYQSRPSGSESKLNTISDGFRVLGTSFLLMKETRPFLFFGAFFALFSGAAIALMLPVLLTYLETGLVPRFPTVIIAASLMSLGFVFFTCGLILDSVARGRRELKRMAYLRIPRVEINKI
>NZ_CP007542.1|WP_028946986.1|3150410_3151943_-|lysine--tRNA-ligase
MADSHSHSSLEEIRATRLEKAEQLRQLGLNPYAYTWEITHQAQHLQDAYRELANGEEVDLKVAIAGRILARRVMGKLAFFTLQDESGTIQLYLEKQRLTENMPELENAFNLLKKITDVGDILGVTGTLKRTEKGELSVYVQTYAVLTKSLLPLPDKWHGLTDTEKRYRQRYVDLIVNPTVRQTFRRRAQITAAIRRYLDEQGFIEIETPVLQGESGGAEARPFITHHNTLDMSLYLRIATELHLKRLVVGGFEKVFELGRIFRNEGVSTRHNPEFTSIEVYQAYVDYNEMMALTEALITTAAEAVLGTLTITYQGEEINLTPPWKRITMHEAVEVETGIDFNQFTDLETAKQAATEAGIGVPEDCPSLGHLLNHAFEQKVEATLIQPTFITDFPVEISPLAKPHRSKPGLVERFELFVYGRELANSFSELTDPIDQRARLEAQAAKKAAGDLEAHGVDEDFLTALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLKNQEASGEG
>NZ_CP007542.1|WP_028946985.1|3152123_3152321_-|hypothetical-protein
MTPKSGILLLLSCVAAIAAVGCVFELSSGQPELGSTTTTAILLGSIPLTAIFFWIAVQDTRANMK
>NZ_CP007542.1|WP_028946984.1|3152381_3152945_-|peptide-deformylase
MTATLLVEKQKVDNPPLELHYLGDKVLRQPAKRIAKVDDSIRKLAREMLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHLNGVMFVDRVDNPLALAESLKKEGFSMQAVKPVA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	16349-16377	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013554	Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence	16350-16378	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013588	Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence	16349-16377	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	16345-16373	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	21220-21248	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	21220-21248	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	16357-16385	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	21220-21248	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	16468-16496	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	21220-21248	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013565	Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence	16350-16378	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	16357-16385	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	21220-21248	6	0.793
NZ_CP007542_4	4.1\|3136547\|29\|NZ_CP007542\|CRISPRCasFinder	3136547-3136575	29	NC_010998	Rhizobium etli CIAT 652 plasmid pA, complete sequence	16351-16379	6	0.793

1. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgat	Protospacer
** ****************** . ** *

2. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013554 (Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

3. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013588 (Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

4. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

5. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

6. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

7. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

8. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

9. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgat	Protospacer
** ****************** . ** *

10. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

11. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013565 (Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

12. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

13. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

14. spacer 4.1|3136547|29|NZ_CP007542|CRISPRCasFinder matches to NC_010998 (Rhizobium etli CIAT 652 plasmid pA, complete sequence) position: , mismatch: 6, identity: 0.793

gcctcaccgaacacactgtcgttccctag	CRISPR spacer
gcatcaccgaacacactgtcgacgccgac	Protospacer
** ****************** . ** *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP007544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007544_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007544_1

51055-51877

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	PILER-CR
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CRISPRCasFinder
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CRT

11 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3,cas6

The CRISPR arrays of NZ_CP007544_1

>merge|NZ_CP007544|1|51055-51877|PILER-CR,CRISPRCasFinder,CRT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACTTACAAATGGAACTAACACTTGTTTTGGATCGAAGTGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACACCTGGAATTTGGAGCCACCCAAACCCAGCGGGGGGGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACTTTATCACCGTGTCCCCAATCTGGATATTTTGTGTGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACTAACAATTACAGAAACTTCAAGCGGATTTGCTATAGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACACCGTAAGATTGGCAGATATTATCGTCCCTGATATGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACCATACCGTGCATCAGGATAATATCACAATGCTTTCTGGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACGCAGATCTGGACATTGACACGACCAGGGAAACCCTGTGTCCAAACCATTGATGCCATAAGGCGTTGAGCACGGATTTGCTCATGCCAATTGTGGGGGATTTTGCCCGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACGCGTGGCGGGCGGGGCAATTGTTAGTGCGATCGCCGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACTACGTTTTTCCGTCCCAGGCAACATAGCAGGCATGGGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCACCTTGGTTTGATGAGTCCACCGGCTGGGTTAAAGGTAGTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP007544|1|1|51055-51877|PILER-CR
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTACAAATGGAACTAACACTTGTTTTGGATCGAAGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCTGGAATTTGGAGCCACCCAAACCCAGCGGGGGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTTATCACCGTGTCCCCAATCTGGATATTTTGTGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TAACAATTACAGAAACTTCAAGCGGATTTGCTATA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCGTAAGATTGGCAGATATTATCGTCCCTGATAT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CATACCGTGCATCAGGATAATATCACAATGCTTTCTG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCAGATCTGGACATTGACACGACCAGGGAAACCCT
GTGTCCAAACCATTGATGCCATAAGGCGTTGAGCAC	GGATTTGCTCATGCCAATTGTGGGGGATTTTGCCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCGTGGCGGGCGGGGCAATTGTTAGTGCGATCGCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TACGTTTTTCCGTCCCAGGCAACATAGCAGGCATGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CTTGGTTTGATGAGTCCACCGGCTGGGTTAAAGGTA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP007544|1|1|51055-51877|CRISPRCasFinder
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTACAAATGGAACTAACACTTGTTTTGGATCGAAGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCTGGAATTTGGAGCCACCCAAACCCAGCGGGGGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTTATCACCGTGTCCCCAATCTGGATATTTTGTGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TAACAATTACAGAAACTTCAAGCGGATTTGCTATA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCGTAAGATTGGCAGATATTATCGTCCCTGATAT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CATACCGTGCATCAGGATAATATCACAATGCTTTCTG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCAGATCTGGACATTGACACGACCAGGGAAACCCT
GTGTCCAAACCATTGATGCCATAAGGCGTTGAGCAC	GGATTTGCTCATGCCAATTGTGGGGGATTTTGCCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCGTGGCGGGCGGGGCAATTGTTAGTGCGATCGCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TACGTTTTTCCGTCCCAGGCAACATAGCAGGCATGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CTTGGTTTGATGAGTCCACCGGCTGGGTTAAAGGTA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP007544|1|1|51055-51877|CRT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTACAAATGGAACTAACACTTGTTTTGGATCGAAGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCTGGAATTTGGAGCCACCCAAACCCAGCGGGGGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTTATCACCGTGTCCCCAATCTGGATATTTTGTGT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TAACAATTACAGAAACTTCAAGCGGATTTGCTATA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ACCGTAAGATTGGCAGATATTATCGTCCCTGATAT
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CATACCGTGCATCAGGATAATATCACAATGCTTTCTG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCAGATCTGGACATTGACACGACCAGGGAAACCCT
GTGTCCAAACCATTGATGCCATAAGGCGTTGAGCAC	GGATTTGCTCATGCCAATTGTGGGGGATTTTGCCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	GCGTGGCGGGCGGGGCAATTGTTAGTGCGATCGCC
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TACGTTTTTCCGTCCCAGGCAACATAGCAGGCATGG
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CTTGGTTTGATGAGTCCACCGGCTGGGTTAAAGGTA
GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007544.1\|WP_028946494.1\|53810_54026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007544.1\|WP_028946491.1\|55608_56031_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|377770
NZ_CP007544.1\|WP_028946500.1\|46803_47709_+\|CRISPR-associated-protein-Cas8	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP007544.1\|WP_028946493.1\|54009_54624_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP007544.1\|WP_028946489.1\|56709_57327_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198315
NZ_CP007544.1\|WP_040123008.1\|53440_53752_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225724
NZ_CP007544.1\|WP_071880939.1\|45064_46720_+\|type-I-MYXAN-CRISPR-associated-protein-Cmx8	cas8b3	mkCas0177_cas8b3_CAS-I-B	gnl\|CDD\|275206
NZ_CP007544.1\|WP_028946495.1\|52062_52413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007544.1\|WP_028946504.1\|41864_42062_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_CP007544.1\|WP_081857716.1\|52415_52940_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP007544.1\|WP_028946490.1\|56106_56700_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226105
NZ_CP007544.1\|WP_028946496.1\|50508_50802_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP007544.1\|WP_028946492.1\|54820_55243_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
NZ_CP007544.1\|WP_051738965.1\|47712_48426_+\|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NZ_CP007544.1\|WP_028946498.1\|48458_48671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007544.1\|WP_040123006.1\|42717_45072_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP007544.1\|WP_028946497.1\|48805_50500_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP007544.1\|WP_028946488.1\|57436_57982_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP007544.1\|WP_051738973.1\|42071_42740_+\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP007544.1\|WP_028946505.1\|41650_41872_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514

Protein	Function_ID	Function_description	E-value
NZ_CP007544.1\|WP_028946488.1\|57436_57982_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.05943e-11
NZ_CP007544.1\|WP_028946491.1\|55608_56031_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|377770	pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.	3.47387e-88
NZ_CP007544.1\|WP_028946500.1\|46803_47709_+\|CRISPR-associated-protein-Cas8	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.06819e-18
NZ_CP007544.1\|WP_028946490.1\|56106_56700_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226105	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only].	5.17015e-17
NZ_CP007544.1\|WP_028946489.1\|56709_57327_-\|glutathione-S-transferase	gnl\|CDD\|198315	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	3.74604e-46
NZ_CP007544.1\|WP_071880939.1\|45064_46720_+\|type-I-MYXAN-CRISPR-associated-protein-Cmx8	gnl\|CDD\|275206	TIGR04413, hypothetical_protein_LEP1GSC082_4029, CRISPR type MYXAN-associated protein Cmx8. Members of this family occur only in CRISPR/cas loci of the MYXAN type, but are present in a minority of such systems. This protein appears to replace the MYXAN system Cas8a1/Csx13 protein (TIGR03485/TIGR03486), compared to which it shows similar length and composition but only about 12 percent sequence identity.	0
NZ_CP007544.1\|WP_040123008.1\|53440_53752_-\|HNH-endonuclease	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	0.00121057
NZ_CP007544.1\|WP_028946504.1\|41864_42062_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	1.99869e-14
NZ_CP007544.1\|WP_081857716.1\|52415_52940_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	8.42379e-10
NZ_CP007544.1\|WP_028946496.1\|50508_50802_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.3268e-17
NZ_CP007544.1\|WP_028946492.1\|54820_55243_-\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	1.47357e-68
NZ_CP007544.1\|WP_051738965.1\|47712_48426_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.84656e-07
NZ_CP007544.1\|WP_028946493.1\|54009_54624_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	4.15268e-22
NZ_CP007544.1\|WP_040123006.1\|42717_45072_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.10468e-38
NZ_CP007544.1\|WP_028946497.1\|48805_50500_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP007544.1\|WP_051738973.1\|42071_42740_+\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.03695e-75
NZ_CP007544.1\|WP_028946505.1\|41650_41872_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.23361e-11

>NZ_CP007544.1|WP_028946496.1|50508_50802_+|CRISPR-associated-endonuclease-Cas2
MAELKNWYLICYDIRCPKRWRKAYKLLEGYGDRLQYSIFRCWLSQRMREKLRWELEKILTLEDDLILIRLSAQCVKDLPKYNRQNTWILEGGGFRVI
>NZ_CP007544.1|WP_028946497.1|48805_50500_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MYTLEPQETQQITEDTLRVCSLHAYAYCPRLFYLEEVEELYTQDAAVFAGRRLHEELEKNEDEEWLDLYLEDELLGLRGRVDALKTRNGETIPYEHKRGRCYRDENKQPQAWESDRLQILAYCYLLEVALGITVAEGRIRYHADNVLVHIPFDQAAKCSVETAIQEAKALRRTAKRISVRSPYRPAVTNNEHLCTRCSLAAVCLPEEARLAHNKEWHPTRLFPQDDEREVIHILEPGTRVGRTGEQLKITRRDQPIEKLSVQQVSQVVLHSFSQLSTQALHFLSYKDVGIHFISGGGRYVGSLDTRQGSIQRRIHQYQALTQPDFTLSLAKKLVYCRGESQRKFLMRGKRNRQESLPIVEQAIDQIKAVVRLVQHSESLASLLGYEGNMAALYFAALSELLSEDVPDNLRFAGRNRRPPKDRFNALLSFGYALLIKDVMNAILTVGLEPALGFYHQPRTQAPPLALDLMEVFRVPLVDMTIISSLNRGQWHESEDFDIRGQQVWLSESGRRKFIEIYEARKSEKWKHPATGYSLTYRRLFELEVRLLEKEWSGEAGLFGRLILR
>NZ_CP007544.1|WP_028946498.1|48458_48671_+|hypothetical-protein
MITREQFKAELDAVDDLTINILHGVMIALKQKVSTSPNQADWSTNNPLKNSIVYENDVLSPIDENWDAER
>NZ_CP007544.1|WP_051738965.1|47712_48426_+|CRISPR-associated-protein-Cas5
MAQLALALDTVTRYLRLKAPFAAFRPFQSGSFRSTTPVPSFSAVYGLLLNLAGIEQRQEVEGKVTLIKPKAELPKLAIAIGQVKPSSTSLINQQLHNYPVGNSGKEFASRTFGSKYWIAPVRREVLVNLDLIIGLQSPVEFWQKLDQGLKGETVINRYGLPFAGDNNFLFDEIYPIEKPDLASWYCPLEPDTRPNQGACRLTLWIDRENNTQTTIKVFSPSDFRLEPPAKAWQQLPG
>NZ_CP007544.1|WP_028946500.1|46803_47709_+|CRISPR-associated-protein-Cas8
MSNLNLFATILTYPAPASNYRGESEENRSVIQKILKDGQKYAIISPESMRNALREMLIELGQPNNRTRLHSEDQLAVEFKEYPNPDKFADDFLFGYMVAQTNDAKEMKKLNRPAKRDSIFRCNMAVAVNPYKYDTVFYQSPLNAGDSAWKNSTSSALLHREVTHTAFQYPFALAGKDCAAKPEWVKALLQAIAELNGVAGGHARAYYEFAPRSVVARLTPKLVAGYQTYGFDAEGNWLELSRLTATDSDNLDLPANEFWLGGELVRKMDQEQKAQLEAMGAHLYANPEKLFADLADSFLGV
>NZ_CP007544.1|WP_071880939.1|45064_46720_+|type-I-MYXAN-CRISPR-associated-protein-Cmx8
MPKTQAEILTLDFNLAELPSAQHRAGLAGLILMIRELKKWPWFKIRQKEKDVLLSIENLDQYGASIQLNLEGLIALFDLAYLSFTEERKSKSKIKDFKRVDEIEIEENGKNKIQKYYFYDVITPQGGFLAGWDKSDGQIWLRIWRDMFWSIIKGVPATRNPFNNRCGLNLNAGDSFSKDVESVWKSLQNAEKTTGQSGAFYLGAMAVNAENVSTDDLIKWQFLLHFWAFVAQVYCPYILDKDGKRNFNGYVIVIPDIANLEDFCDILPDVLSNRNSKAFGFRPQESVIDVPEQGALELLNLIKQRIAKKAGSGLLSDLIVGVEVIHAEKQGNSIKLHSVSYLQPNEESVDDYNAIKNSYYCPWFRRQLLLNLVNPKFDLASQSWLKRHPWYGFGDLLSRIPQRWLKENNSYFSHDARQLFTQKGDFDMTVATTKTREYAEIVYKIAQGFVLSKLSSKHDLQWSKCKGNPKLEREYNDKKEKVVNEAFLAIRSRTEKQAFIDYFVSTLYPHVRQDEFVDFAQKLFQDTDEIRSLTLLALSSQYPIKRQGETE
>NZ_CP007544.1|WP_040123006.1|42717_45072_+|CRISPR-associated-helicase/endonuclease-Cas3
MLKQLLAKSLPTDPQKKPLSLEQHLLDTETAALVIFKGRMLDNWCRFFKVKDPDEFLLHLRVAALFHDLGKANHEFIEAVTAKGFVPQTLRHEWISALVLHLPEVRQWLGKSNLNLEVVTAAVLSHHLKASPDGDYKWDEPQKSGDKVETKLYFNHEEVDRILNKIANLLDVDSKLPELPKKWIKGDIFLENIYKDANQIGRKFTRQAKKDDSLKGLLLAVKAGLIASDSVASGIYRTQDSEAIANWVNQTLHTNSITPEEIEEKILHPRYRQVEKSINEPFQLKRFQEKAETLSSRLLLMSGCGSGKTIFAYKWMQGVLNKHQAGRAIFLYPTRGTATEGFKDYVSWCPEADASLLTGTATYELQAIAKNPTEANEGKDYQADERLYALGYWGKRFFSATVDQFLSFLTHNYKSICLLPVLADSVVVIDEIHSFSPEMFDSLVCFLKTFDVPVLCMTATLPQTRIEDLTIQLDKDKDGLGLEVFPTSDRSELAELEKAEGMERYLIAHTNEEAALDLAVKAYQDSKRVLWVVNTVDRCREKARKLECLLKTEVLTYHSRFKLADRQNRHRETVEAFALHQAQGEKKAAIAVTTQVCEMSLDLDADVLITELAPISSLVQRFGRSNRGDKNDKTEPSKIYVYKPPKDKPYKQKDDLDPAEKFINDVLGRASQKLLAEKLKEHSPPGRYSDGSAPFVTQGYWASSDEPFRKIDDFAVNAVLTEDLGEITQYLNSNPPKPIDGFIVPVPKKYKFQGFSHRPPQLPKYLEIADSKFYSSKRGFGDDA
>NZ_CP007544.1|WP_051738973.1|42071_42740_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MMNFIDLAFPVKGTVLNADHNYYLYSAIAKEFPILHDLPDLAVNTISGKPDREGKILLVPGSKLWMRLPIDNITHIYQLAGKKLRIGQYSIELGNPSLHPLEPVESLKARIITIKGHTEPISFLEAVKRQLFALEITEGDVGIPANHEGIPKRLTLQIKKPERTYSIVGYSVLLSNLSAEDSLKIQQVGIGGKRRLGCGVFYPAVKKSTNSGNKKNVEATLG
>NZ_CP007544.1|WP_028946504.1|41864_42062_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPKIPRLTAKQAEKMLLDAGFELLRSEGSHRIYGKQSRRVVIPFHSGKILHPKIVKQVIQAIQND
>NZ_CP007544.1|WP_028946505.1|41650_41872_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MHQILTIIEKDEFGYYAYCPALEGCQTQGDSLEEVEQNIKEAIALYLSTLTKEEKQKLFDKELTAMMTEVQVA
>NZ_CP007544.1|WP_028946495.1|52062_52413_+|hypothetical-protein
MAQITLDLPDELLEQIVQAGENPSEWLRHRLPDILKPVPPLPAHLYRHILNFIASNPTPQQISDFRPTPEMQERLRNLLNREENLTPSEQAELEEYERIEHLVVMLKAGNLKNLVG
>NZ_CP007544.1|WP_081857716.1|52415_52940_+|HNH-endonuclease
MSKTYISLALRRLVTERANDQCEYCRLPANLSFFPHELDHIIAEKHGGQTISENLALTCWRCNRHKGSDLGSFDPHTNEFCFLFNPRTQSWSEHFSPSHHHIEGLTPEGRTTVKLLQLNTSERIAERKRLNPITRRSPKNSDYISPDRLYAESYTKTSKDQGYKAFFMVSNVPK
>NZ_CP007544.1|WP_040123008.1|53440_53752_-|HNH-endonuclease
MKDDRYPLNWSQIATAKKQSVGWVCERCGVQCLKPGEGKGLSKEERYRLRMAVHHCDYDPGNNTLSNLMALCSPCHLHYHRRQQGNITPGQLSLEFCYGIKNI
>NZ_CP007544.1|WP_028946494.1|53810_54026_-|hypothetical-protein
MGRLSKVFDTAKAESTPEPEITKARSSEFVNLNFKVTSEMRRKLKQYAAKHDLSLKDVFEAALDFYIEHHP
>NZ_CP007544.1|WP_028946493.1|54009_54624_-|ParA-family-protein
MKIIAVTGYKGGVGKTITSIHIARYLADQGKVLLIDSDPNRSVEKWAARSEKEPLFKVKNEKSAPAHIAGNDFLVLDTPARPDSNELKEISQEAHLTILPCVPDAISLDPMLQMFHDLYPSAIYRVLITIAPPYPSKSADELRSVLAENRIEVFKGFIRRSASVVKAIDMGVTTAEMKGRDHYPWQDYKTIGKEIMEVINGTAQ
>NZ_CP007544.1|WP_028946492.1|54820_55243_-|cytidine-deaminase
MVDICWEQLHRSAIEVRQNAYAPYSHFLVGAAGLVDDGRIVVGCNIENASYGLTLCAECGLVSHLMATGGGCLVAVVCVDSQDNYLAPCGRCRQVLLEHGGRELQIMTPIGPLSITELLPWSFGPEDLDRIGGLKANPKN
>NZ_CP007544.1|WP_028946491.1|55608_56031_-|nuclear-transport-factor-2-family-protein
MTEFISRPPLPPFTLETAKAKVQAAEDAWNTRDPERVILAYTQDSVWRNRAEFFQGRDKIREFLTRKWNTELDYRLKKELWSFTDNRISVKFEYEYHNDLGKWYRAYGNEQWEFASNGLMQRREASINDLSIQESERKFR
>NZ_CP007544.1|WP_028946490.1|56106_56700_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MPRKFGEIAFTPEVQAAQSDRGSRQTYERYIANGDSNDTITPKIADFIAQLDGFYLGTVGSNGYPYIQFRGGPPGFLKVLDEKTLGFADFSGNVQYITVGNLSGNDKAFLFLMDYRHRKRIKIWGRAHYLEGESELLQTLRQRDYSAPVERAILFQVEAISENCPQHIPIRYSEAEVTAMIAPLQARIAELEKSEMV
>NZ_CP007544.1|WP_028946489.1|56709_57327_-|glutathione-S-transferase
MIKLYGHELSGNTYKVKLLLSLLALDYEWIKVDLMVGAHKRPEFLALNPFGQLPALVDGETVLADAQAILVYLARQYGGDRWLPLEPLPLAQVVRWLSTAAGEIRQGPESARLYHLFSATNIDIERANQKADFILSQLDQHLTERTWLALAQTTIADVAVFPYVALAGDGQIDLRPYPNVLTWIERVKKLPGFVGMIGIEELVIT
>NZ_CP007544.1|WP_028946488.1|57436_57982_+|TetR/AcrR-family-transcriptional-regulator
MPKDNYLPCLLQLFRQYGYDGATLSKIAAATGLGKASLYHHFPGGKEEMMTSVLAYVEGWLDKNLLPSLQGDGTAQLKLQRMGDRLLELYEGGEQPCLFAILLSGSARDTFHAQVQRLFETWIVAIAKVLMAEGIEEKVAKQKAEKAVILVQGSLILSQGLNDIKIFKQTIDNLPTELLLS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP007544_1	1.1\|51091\|36\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51091-51126	36	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51091-51126	1.0
NZ_CP007544_1	1.2\|51163\|36\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51163-51198	36	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51163-51198	1.0
NZ_CP007544_1	1.3\|51235\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51235-51269	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51235-51269	1.0
NZ_CP007544_1	1.4\|51306\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51306-51340	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51306-51340	1.0
NZ_CP007544_1	1.5\|51377\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51377-51411	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51377-51411	1.0
NZ_CP007544_1	1.6\|51448\|37\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51448-51484	37	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51448-51484	1.0
NZ_CP007544_1	1.7\|51521\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51521-51555	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51521-51555	1.0
NZ_CP007544_1	1.8\|51592\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51592-51626	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51592-51626	1.0
NZ_CP007544_1	1.9\|51663\|35\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51663-51697	35	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51663-51697	1.0
NZ_CP007544_1	1.10\|51734\|36\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51734-51769	36	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51734-51769	1.0
NZ_CP007544_1	1.11\|51806\|36\|NZ_CP007544\|PILER-CR,CRISPRCasFinder,CRT	51806-51841	36	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	51806-51841	1.0

1. spacer 1.1|51091|36|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

ttacaaatggaactaacacttgttttggatcgaagt	CRISPR spacer
ttacaaatggaactaacacttgttttggatcgaagt	Protospacer
************************************

2. spacer 1.2|51163|36|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

acctggaatttggagccacccaaacccagcgggggg	CRISPR spacer
acctggaatttggagccacccaaacccagcgggggg	Protospacer
************************************

3. spacer 1.3|51235|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

tttatcaccgtgtccccaatctggatattttgtgt	CRISPR spacer
tttatcaccgtgtccccaatctggatattttgtgt	Protospacer
***********************************

4. spacer 1.4|51306|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

taacaattacagaaacttcaagcggatttgctata	CRISPR spacer
taacaattacagaaacttcaagcggatttgctata	Protospacer
***********************************

5. spacer 1.5|51377|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

accgtaagattggcagatattatcgtccctgatat	CRISPR spacer
accgtaagattggcagatattatcgtccctgatat	Protospacer
***********************************

6. spacer 1.6|51448|37|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

cataccgtgcatcaggataatatcacaatgctttctg	CRISPR spacer
cataccgtgcatcaggataatatcacaatgctttctg	Protospacer
*************************************

7. spacer 1.7|51521|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

gcagatctggacattgacacgaccagggaaaccct	CRISPR spacer
gcagatctggacattgacacgaccagggaaaccct	Protospacer
***********************************

8. spacer 1.8|51592|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

ggatttgctcatgccaattgtgggggattttgccc	CRISPR spacer
ggatttgctcatgccaattgtgggggattttgccc	Protospacer
***********************************

9. spacer 1.9|51663|35|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtggcgggcggggcaattgttagtgcgatcgcc	CRISPR spacer
gcgtggcgggcggggcaattgttagtgcgatcgcc	Protospacer
***********************************

10. spacer 1.10|51734|36|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

tacgtttttccgtcccaggcaacatagcaggcatgg	CRISPR spacer
tacgtttttccgtcccaggcaacatagcaggcatgg	Protospacer
************************************

11. spacer 1.11|51806|36|NZ_CP007544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 0, identity: 1.0

cttggtttgatgagtccaccggctgggttaaaggta	CRISPR spacer
cttggtttgatgagtccaccggctgggttaaaggta	Protospacer
************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage