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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP048273 Bacillus sp. NSP9.1 chromosome, complete genome 3 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 9 0

Results visualization

1. NZ_CP048273
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048273_1 1808137-1808267 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048273_2 3627825-3627931 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048273_3 3628004-3628111 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10419-10476 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70766-70823 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-895 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75882 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 255887-255944 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1320-1377 8 0.862
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1962-2019 9 0.845
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483848 11 0.81
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NC_004604 Bacillus megaterium QM B1551 plasmid pBM400, complete sequence 46420-46477 11 0.81
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64775-64832 12 0.793
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57418 13 0.776
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NC_048753 Lactobacillus phage 3-521, complete genome 13555-13612 14 0.759
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 5223-5280 15 0.741
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP041068 Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence 36191-36248 15 0.741
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 NZ_CP032535 Bacillus megaterium NCT-2 plasmid pNCT2_7, complete sequence 36091-36148 15 0.741
NZ_CP048273_2 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder 3627849-3627906 58 CP041516 Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence 17872-17929 15 0.741
NZ_CP048273_3 3.1|3628028|60|NZ_CP048273|CRISPRCasFinder 3628028-3628087 60 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 900398-900457 15 0.75
NZ_CP048273_3 3.1|3628028|60|NZ_CP048273|CRISPRCasFinder 3628028-3628087 60 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 1553407-1553466 15 0.75

1. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatgg-ggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagtggcgg-	Protospacer
******************************************* *. .* .* ****. 

2. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatgg-ggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagtggcgg-	Protospacer
******************************************* *. .* .* ****. 

3. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatgg-ggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagtggcgg-	Protospacer
******************************************* *. .* .* ****. 

4. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatgg-ggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagtggcgg-	Protospacer
******************************************* *. .* .* ****. 

5. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattatatacgacggt	Protospacer
******************************************* *...**. *.**.*

6. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 8, identity: 0.862

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatgg-ggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagtggcgg-	Protospacer
******************************************* *. .* .* ****. 

7. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.845

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccg	Protospacer
*********************************************..  *. ***   

8. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.81

cagcttggaaggctgaggttttaccactaaactacacccgca----------tttcgcat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgc--	Protospacer
******************************************          ***.**  

9. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NC_004604 (Bacillus megaterium QM B1551 plasmid pBM400, complete sequence) position: , mismatch: 11, identity: 0.81

cagcttggaaggctgaggttttaccactaaactacacccgcat-ttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccattaaactacacccgcatgttttcttaaaatgg-	Protospacer
**************************.**************** **. * *.....*. 

10. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.793

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccat	Protospacer
*******************************************  ..    . .* **

11. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 13, identity: 0.776

cagcttggaaggctgaggttttaccactaaactacacccgcat---------ttcgcatg	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttctta--	Protospacer
*************** .**************************         *** .*  

12. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NC_048753 (Lactobacillus phage 3-521, complete genome) position: , mismatch: 14, identity: 0.759

cagcttggaaggctgaggttttaccactaaactacacccgc-------atttcgcatggg	CRISPR spacer
cagcttggaaggctgtggttttaccactaaactatacccgcgtgaactactcgtcata--	Protospacer
*************** ******************.******       *.*.  ***.  

13. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 15, identity: 0.741

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccattaaactacacccgctttatttttaaaaaata	Protospacer
**************************.************** ** . . *.... .  

14. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 15, identity: 0.741

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaaatggc	Protospacer
**************************.************** * *. .  .....*..

15. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to NZ_CP032535 (Bacillus megaterium NCT-2 plasmid pNCT2_7, complete sequence) position: , mismatch: 15, identity: 0.741

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaaatggc	Protospacer
**************************.************** * *. .  .....*..

16. spacer 2.1|3627849|58|NZ_CP048273|CRISPRCasFinder matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 15, identity: 0.741

cagcttggaaggctgaggttttaccactaaactacacccgcatttcgcatggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaaatggc	Protospacer
**************************.************** * *. .  .....*..

17. spacer 3.1|3628028|60|NZ_CP048273|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 15, identity: 0.75

acggattttcagtccgttgctctaccaactgagctaccgagcctttttaaatggcggtcc	CRISPR spacer
gaggattttcagtcctctgctctaccaactgagctaccgagcctaacttgttgttgttta	Protospacer
. ************* .***************************  .* . ** .* *. 

18. spacer 3.1|3628028|60|NZ_CP048273|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 15, identity: 0.75

acggattttcagtccgttgctctaccaactgagctaccgagcctttttaaatggcggtcc	CRISPR spacer
gaggattttcagtcctctgctctaccaactgagctaccgagcctaacttgctgttgttta	Protospacer
. ************* .***************************  .* . ** .* *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1150667 : 1162056 17 uncultured_Caudovirales_phage(40.0%) integrase attL 1150293:1150307|attR 1156830:1156844
DBSCAN-SWA_2 1165797 : 1184638 29 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_3 1194189 : 1211720 19 uncultured_Caudovirales_phage(40.0%) tail,portal,integrase,protease attL 1193312:1193326|attR 1199143:1199157
DBSCAN-SWA_4 1601139 : 1756589 181 Bacillus_phage(32.91%) coat,integrase,terminase,plate,holin,capsid,portal,tail attL 1654608:1654658|attR 1708297:1708347
DBSCAN-SWA_5 2324705 : 2365286 56 Bacillus_phage(73.81%) integrase,plate,terminase,holin,capsid,head,protease,portal,transposase,tail attL 2326944:2326958|attR 2335072:2335086
DBSCAN-SWA_6 2541407 : 2550807 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 2871076 : 2877292 9 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_8 3849463 : 3859361 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_9 4255066 : 4261448 7 Caulobacter_phage(50.0%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage