CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007014	Pseudomonas syringae CC1557, complete sequence	0 crisprs	csa3,DEDDh,PD-DExK,DinG,cas3	0	0	6	0
NZ_CP007015	Pseudomonas syringae CC1557 plasmid pCC1557, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

550840 : 604741

Pseudomonas_phage(55.17%)

tRNA,plate,lysis,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024644715.1\|550840_551866_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.7e-104	56.1
WP_080274784.1\|551931_552510_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_025388776.1\|552574_552928_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_025388777.1\|552918_553443_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_025388778.1\|553627_554857_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	7.9e-82	46.8
WP_025388779.1\|554954_556517_-	SpoVR family protein	NA	NA	NA	NA
WP_024644721.1\|556513_557785_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.9e-10	40.4
WP_024644722.1\|557906_559829_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_025388780.1\|560116_560437_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_025388781.1\|560433_561339_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	5.0e-09	44.6
WP_024644725.1\|561338_561719_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_024644726.1\|561831_562638_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_024644727.1\|562634_563624_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_154219927.1\|563620_564949_-	molecular chaperone SurA	NA	NA	NA	NA
WP_025388783.1\|564923_567704_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_025388784.1\|567833_568859_+	phosphotransferase	NA	NA	NA	NA
WP_024644731.1\|568910_569582_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_025388785.1\|569582_570350_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_025388786.1\|570377_571391_-	DUF3530 family protein	NA	NA	NA	NA
WP_025388787.1\|571469_573518_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_024644735.1\|573514_574144_+	response regulator transcription factor	NA	NA	NA	NA
WP_025388788.1\|574522_575647_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
WP_024645973.1\|575729_576764_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_025388789.1\|576840_578088_+	ABC transporter permease	NA	NA	NA	NA
WP_024672805.1\|578099_578921_+	ABC transporter permease	NA	NA	NA	NA
WP_024645970.1\|579047_579722_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_025388790.1\|579718_580537_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_025388791.1\|580607_582089_+	anthranilate synthase component I	NA	NA	NA	NA
WP_025388792.1\|582182_584105_-	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_080265750.1\|584210_584477_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	8.1e-16	50.0
WP_024645965.1\|584574_584823_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_080265749.1\|584975_585665_-	helix-turn-helix domain-containing protein	Q8HAG7	Salmonella_phage	5.1e-54	48.8
WP_025388793.1\|585777_586215_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	2.0e-24	47.4
WP_003411734.1\|586526_586916_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_024645962.1\|586896_587235_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	1.8e-20	60.5
WP_025388794.1\|587280_587871_+	hypothetical protein	B5TK65	Pseudomonas_phage	5.4e-52	52.0
WP_024645960.1\|587867_588056_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	7.0e-14	71.4
WP_024645959.1\|588074_589571_+\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	1.9e-234	80.1
WP_024645958.1\|589631_589979_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	4.5e-43	70.4
WP_024645957.1\|589975_590272_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	1.6e-33	76.3
WP_025388795.1\|590402_592562_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	8.5e-79	40.8
WP_025388796.1\|592558_594004_+	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.7e-107	44.5
WP_025388797.1\|594007_595135_+	hypothetical protein	B5TK72	Pseudomonas_phage	6.7e-112	59.0
WP_025388798.1\|595131_595644_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.8e-65	74.4
WP_025388799.1\|595640_596039_+	hypothetical protein	B5TK74	Pseudomonas_phage	6.8e-43	63.6
WP_025388800.1\|596028_597069_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.2e-132	70.1
WP_025388801.1\|597056_597656_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	8.3e-85	71.9
WP_080265752.1\|597804_599127_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	6.5e-74	51.3
WP_024645948.1\|599134_599701_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	4.4e-43	46.2
WP_024645947.1\|600034_600532_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_025388802.1\|600772_601318_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	7.6e-69	71.7
WP_080274909.1\|601329_601824_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	4.5e-28	49.1
WP_024645944.1\|602237_602837_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-73	64.7
WP_024645943.1\|602858_603908_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.4e-111	57.7
WP_024645942.1\|603904_604741_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.4e-68	55.0

DBSCAN-SWA_2

869220 : 936824

Leptospira_phage(27.27%)

bacteriocin,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025388903.1\|869220_870189_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.3e-95	58.6
WP_154219930.1\|870870_871647_+	hypothetical protein	NA	NA	NA	NA
WP_025388904.1\|871950_873483_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.0e-87	38.0
WP_080265825.1\|873862_874219_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	39.2
WP_038400973.1\|875487_875877_+\|transposase	transposase	S5VTP8	Leptospira_phage	1.7e-22	44.1
WP_025388907.1\|877042_877504_-	hypothetical protein	NA	NA	NA	NA
WP_025388908.1\|877481_877871_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_025388909.1\|877900_878401_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_024644251.1\|879167_879455_-	hypothetical protein	NA	NA	NA	NA
WP_024644252.1\|879746_880229_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-25	41.4
WP_025388910.1\|880341_881745_+	sodium-dependent transporter	NA	NA	NA	NA
WP_024644254.1\|881752_882187_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_025388911.1\|882179_882494_+	RnfH family protein	NA	NA	NA	NA
WP_025388912.1\|882559_883081_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002555142.1\|883179_883587_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_025388913.1\|883634_885308_-	DNA repair protein RecN	NA	NA	NA	NA
WP_024644258.1\|885578_886142_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_024644259.1\|886252_888169_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.0e-149	49.4
WP_024644260.1\|888494_889637_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.0e-22	35.2
WP_007249034.1\|889658_890462_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_024644261.1\|890678_891815_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA
WP_024644262.1\|891952_895174_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_024644263.1\|895170_895647_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_002555133.1\|895726_896038_-	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_005888982.1\|896141_896792_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_024644264.1\|896985_898890_+\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	2.6e-116	49.0
WP_025388914.1\|898898_899750_+	dihydropteroate synthase	NA	NA	NA	NA
WP_024644266.1\|899766_901110_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_025388915.1\|901176_901932_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_024644268.1\|901936_902317_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_024644269.1\|902750_903209_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_024644270.1\|903268_904750_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_024673505.1\|904777_907303_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.5e-21	23.3
WP_024644272.1\|907463_907880_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_024644273.1\|907883_908801_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_002555121.1\|908959_909229_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_007249019.1\|909404_911510_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_002555119.1\|911799_912153_+	BON domain-containing protein	NA	NA	NA	NA
WP_025388916.1\|912302_912641_-	DUF2845 domain-containing protein	NA	NA	NA	NA
WP_080274787.1\|912637_915640_-	DUF748 domain-containing protein	NA	NA	NA	NA
WP_025388918.1\|915732_916749_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.2e-12	24.8
WP_024644277.1\|916911_918495_+	alkaline phosphatase	NA	NA	NA	NA
WP_024644278.1\|918599_919541_+	AEC family transporter	NA	NA	NA	NA
WP_024644279.1\|919537_919921_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_024644280.1\|919953_920985_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_025388919.1\|921048_921408_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.1e-22	58.4
WP_152531803.1\|921455_921584_+	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_154219931.1\|921896_922112_+	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_025388920.1\|922121_923567_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_024644283.1\|923577_925029_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_003418825.1\|925043_925331_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_007249007.1\|925536_926574_+	rod shape-determining protein	NA	NA	NA	NA
WP_080274788.1\|926757_927882_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003377527.1\|927874_928366_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_025388922.1\|928433_929036_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_024644286.1\|929032_930490_+	ribonuclease G	NA	NA	NA	NA
WP_025388923.1\|930672_934488_+	TIGR02099 family protein	NA	NA	NA	NA
WP_025388924.1\|934536_935382_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_024674731.1\|935384_936824_+\|protease	metalloprotease TldD	NA	NA	NA	NA

DBSCAN-SWA_3

1110825 : 1192031

Pseudomonas_phage(50.0%)

tRNA,terminase,protease,integrase,portal,head,capsid,tail

attL 1122975:1122991|attR 1153280:1153296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005745586.1\|1110825_1111059_-	hypothetical protein	A0A2H4J5U9	uncultured_Caudovirales_phage	1.5e-18	73.1
WP_025388992.1\|1111076_1111463_-	hypothetical protein	NA	NA	NA	NA
WP_025388993.1\|1111455_1111653_-	hypothetical protein	NA	NA	NA	NA
WP_025388994.1\|1111649_1111889_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	1.0e-09	61.0
WP_025388995.1\|1111875_1112073_-	carbon storage regulator	H2BD56	Pseudomonas_phage	2.3e-07	59.6
WP_025388996.1\|1112150_1112528_-	response regulator transcription factor	A0A1W6JTA9	Pseudomonas_phage	6.3e-22	49.2
WP_025388997.1\|1112613_1113384_-	LexA family transcriptional regulator	A0A1W6JTC8	Pseudomonas_phage	3.2e-49	48.4
WP_080274791.1\|1113491_1113779_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_025388998.1\|1113915_1114251_+	hypothetical protein	NA	NA	NA	NA
WP_025388999.1\|1114247_1114619_+	hypothetical protein	NA	NA	NA	NA
WP_025389000.1\|1114615_1114861_+	hypothetical protein	NA	NA	NA	NA
WP_025389001.1\|1114857_1115583_+	hypothetical protein	A0A1W6JTB2	Pseudomonas_phage	3.4e-40	44.7
WP_025389002.1\|1115579_1115957_+	hypothetical protein	NA	NA	NA	NA
WP_025389003.1\|1115953_1116709_+	helix-turn-helix domain-containing protein	A0A0P0ZC04	Stx2-converting_phage	8.4e-42	51.1
WP_025389004.1\|1116705_1117494_+	DNA replication protein DnaC	A0A0A0YRV1	Pseudomonas_phage	1.6e-64	49.6
WP_025389005.1\|1117490_1118873_+	AAA family ATPase	A0A2H4J8N1	uncultured_Caudovirales_phage	6.9e-143	56.8
WP_025389006.1\|1118865_1120221_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	6.4e-109	48.2
WP_025389007.1\|1120213_1120825_+	hypothetical protein	A0A2H4J2J2	uncultured_Caudovirales_phage	4.0e-58	49.8
WP_154219933.1\|1120974_1121667_+	hypothetical protein	NA	NA	NA	NA
WP_154219934.1\|1121644_1121818_+	hypothetical protein	NA	NA	NA	NA
WP_025389009.1\|1121970_1122342_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	4.4e-44	76.4
WP_025389010.1\|1122341_1122701_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	3.7e-24	66.7
WP_025389011.1\|1122828_1123158_-	hypothetical protein	NA	NA	NA	NA
1122975:1122991	attL	NA	NA	NA	NA
WP_025389012.1\|1123246_1123507_+	hypothetical protein	NA	NA	NA	NA
WP_025389013.1\|1123512_1123827_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	2.0e-29	63.0
WP_025389014.1\|1124034_1124511_+	hypothetical protein	A0A0F7L441	uncultured_marine_virus	2.6e-33	51.0
WP_025389015.1\|1124510_1126052_+\|terminase	terminase large subunit	Q9MCT1	Enterobacteria_phage	2.1e-193	68.2
WP_025389016.1\|1126059_1127271_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	8.1e-172	72.8
WP_025389017.1\|1127254_1127899_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	8.1e-86	73.4
WP_025389018.1\|1127895_1129101_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	4.8e-148	67.1
WP_025389019.1\|1129157_1129376_+	hypothetical protein	NA	NA	NA	NA
WP_025389020.1\|1129376_1129676_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	7.9e-36	74.7
WP_025389021.1\|1129675_1129996_+\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	5.9e-29	65.7
WP_025389022.1\|1130174_1130675_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	2.7e-60	68.5
WP_025389023.1\|1130667_1131054_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	1.5e-55	84.4
WP_025389024.1\|1131108_1131603_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	5.6e-71	80.9
WP_025389025.1\|1131614_1131950_+	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.2e-27	57.8
WP_025389026.1\|1131982_1132192_+	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	5.7e-09	63.3
WP_025389027.1\|1132213_1135717_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	3.1e-54	42.0
WP_025389028.1\|1135716_1136055_+\|tail	phage tail protein	NA	NA	NA	NA
WP_025389031.1\|1137278_1137740_+	hypothetical protein	NA	NA	NA	NA
WP_154219935.1\|1137803_1138163_+	hypothetical protein	NA	NA	NA	NA
WP_025389032.1\|1138219_1138831_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	2.6e-57	59.0
WP_025389033.1\|1138889_1142597_+\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	60.0
WP_025389034.1\|1142598_1142901_+	hypothetical protein	NA	NA	NA	NA
WP_025389035.1\|1142900_1143767_+	hypothetical protein	NA	NA	NA	NA
WP_025389036.1\|1143782_1145162_+\|tail	tail fiber domain-containing protein	A0A0S2SY45	Pseudomonas_phage	2.1e-22	39.7
WP_025389037.1\|1145226_1145760_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	8.7e-86	88.7
WP_080274913.1\|1145789_1146287_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	7.9e-57	83.4
WP_038401041.1\|1146343_1146523_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	9.9e-10	57.1
WP_080274914.1\|1147501_1147738_+	hypothetical protein	A0A059VA35	Pseudomonas_phage	3.5e-31	87.2
WP_025389040.1\|1147883_1148294_+	hypothetical protein	NA	NA	NA	NA
WP_025389041.1\|1148342_1149191_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_025389042.1\|1149187_1150453_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	3.0e-193	77.7
WP_025389043.1\|1150877_1151759_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_025389044.1\|1152054_1152747_-	pseudouridine synthase	NA	NA	NA	NA
WP_025389045.1\|1152782_1153019_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_025389046.1\|1153061_1156394_-	hypothetical protein	NA	NA	NA	NA
1153280:1153296	attR	NA	NA	NA	NA
WP_025389047.1\|1156505_1158320_-	allophanate hydrolase	NA	NA	NA	NA
WP_025389048.1\|1158354_1162056_-	urea carboxylase	NA	NA	NA	NA
WP_024645320.1\|1162165_1162783_-	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_024645319.1\|1162794_1163520_-	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_025389049.1\|1163516_1164299_-	ABC transporter ATP-binding protein	A0A140XAK6	Dickeya_phage	1.5e-17	50.5
WP_025389050.1\|1164295_1165111_-	ABC transporter permease	NA	NA	NA	NA
WP_025389051.1\|1165138_1166206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080265709.1\|1166777_1167233_+	hypothetical protein	NA	NA	NA	NA
WP_025389053.1\|1167376_1168069_+	uracil-DNA glycosylase	S4VYQ4	Pandoravirus	2.0e-53	45.6
WP_024645313.1\|1168093_1169128_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_024645312.1\|1169120_1170635_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_024645311.1\|1170636_1171095_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_024645310.1\|1171157_1172135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_024645308.1\|1172609_1173281_+	response regulator	NA	NA	NA	NA
WP_025389054.1\|1173273_1174656_+	sensor histidine kinase	W8CYF6	Bacillus_phage	6.1e-14	26.3
WP_024645306.1\|1174667_1175489_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	7.3e-23	32.5
WP_025389055.1\|1175601_1176549_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_024645304.1\|1176694_1176949_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_025389056.1\|1176932_1177400_+	hypothetical protein	NA	NA	NA	NA
WP_025389057.1\|1177368_1178985_-	L-aspartate oxidase	NA	NA	NA	NA
WP_002554912.1\|1179480_1180062_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_024645301.1\|1180095_1180686_+	RNA polymerase sigma-H factor AlgU	NA	NA	NA	NA
WP_025389058.1\|1180694_1181654_+	RNA polymerase sigma-H factor AlgU	NA	NA	NA	NA
WP_024645299.1\|1181933_1183367_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-28	30.7
WP_024645298.1\|1183538_1185335_+	elongation factor 4	A0A1S5SF82	Streptococcus_phage	2.5e-20	24.2
WP_024645297.1\|1185344_1186199_+	signal peptidase I	NA	NA	NA	NA
WP_024645296.1\|1186309_1186687_+	DUF4845 domain-containing protein	NA	NA	NA	NA
WP_007248792.1\|1186683_1187373_+	ribonuclease III	A0A1C9C5A7	Heterosigma_akashiwo_virus	4.7e-23	37.8
WP_024645295.1\|1187365_1188268_+	GTPase Era	NA	NA	NA	NA
WP_024645294.1\|1188328_1189012_+	DNA repair protein RecO	NA	NA	NA	NA
WP_024645293.1\|1189090_1189831_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_025389059.1\|1189838_1190798_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_024645291.1\|1190794_1191538_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_025389060.1\|1191638_1192031_-\|protease	protease inhibitor I42 family protein	NA	NA	NA	NA

DBSCAN-SWA_4

2798758 : 2812994

Pseudomonas_phage(40.0%)

integrase

attL 2789150:2789163|attR 2805227:2805240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2789150:2789163	attL	NA	NA	NA	NA
WP_025389829.1\|2798758_2799793_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	9.6e-97	55.5
WP_025389830.1\|2799793_2800009_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_025389831.1\|2800089_2800281_-	hypothetical protein	NA	NA	NA	NA
WP_025389832.1\|2800479_2800692_+	hypothetical protein	NA	NA	NA	NA
WP_025389833.1\|2800851_2801484_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	3.7e-67	63.1
WP_025389834.1\|2801480_2801813_-	hypothetical protein	A0A1B0VM42	Pseudomonas_phage	5.9e-40	65.5
WP_025389836.1\|2802267_2804322_-	DNA methyltransferase	Q5QF27	Pseudomonas_virus	1.4e-240	61.0
WP_025389837.1\|2804405_2805347_+	HNH endonuclease	NA	NA	NA	NA
2805227:2805240	attR	NA	NA	NA	NA
WP_025389838.1\|2805326_2806094_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_025389839.1\|2806198_2806417_+	hypothetical protein	NA	NA	NA	NA
WP_024641805.1\|2806577_2806784_+	hypothetical protein	NA	NA	NA	NA
WP_025389840.1\|2806767_2807121_-	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	3.0e-18	52.2
WP_025389841.1\|2807202_2807661_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	1.1e-41	55.3
WP_025389842.1\|2807657_2807894_-	hypothetical protein	NA	NA	NA	NA
WP_025389843.1\|2807893_2809555_-	hypothetical protein	A0A2H4J6P1	uncultured_Caudovirales_phage	4.3e-163	56.6
WP_025389844.1\|2809551_2810439_-	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	5.9e-79	65.9
WP_016567834.1\|2810767_2810959_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	7.8e-13	60.3
WP_025389845.1\|2810955_2811363_-	hypothetical protein	NA	NA	NA	NA
WP_080274836.1\|2811383_2811851_-	hypothetical protein	NA	NA	NA	NA
WP_025389847.1\|2812214_2812994_-	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	3.7e-93	65.5

DBSCAN-SWA_5

2818211 : 2857701

Pseudomonas_phage(57.89%)

tail,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025389856.1\|2818211_2818874_-	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	4.5e-39	42.9
WP_016567845.1\|2818970_2819156_+	hypothetical protein	NA	NA	NA	NA
WP_024683701.1\|2819284_2819707_+	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	7.2e-51	70.0
WP_025389858.1\|2820324_2821230_+	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	3.6e-47	66.2
WP_025389859.1\|2821216_2822014_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	7.9e-91	69.0
WP_025389860.1\|2822010_2822481_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	3.6e-51	60.9
WP_025389861.1\|2822477_2823098_+	bacteriophage lambda NinG family protein	A0A059VA66	Pseudomonas_phage	2.6e-73	73.1
WP_025389862.1\|2823094_2823676_+	hypothetical protein	A0A059VF83	Pseudomonas_phage	7.7e-104	93.3
WP_025389863.1\|2823793_2824537_+	hypothetical protein	NA	NA	NA	NA
WP_025389864.1\|2824596_2824968_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.2e-43	80.5
WP_025389865.1\|2824967_2825306_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	1.3e-31	80.5
WP_024691598.1\|2825361_2825592_+	hypothetical protein	A0A1S6UB66	Serratia_phage	2.2e-17	63.4
WP_080274838.1\|2825617_2825836_+	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	1.1e-18	67.6
WP_025389866.1\|2825976_2826222_+	hypothetical protein	NA	NA	NA	NA
WP_025389867.1\|2826255_2826447_-	hypothetical protein	NA	NA	NA	NA
WP_025389868.1\|2826565_2827189_+	hypothetical protein	A0A059VJU8	Pseudomonas_phage	2.9e-109	93.2
WP_025389869.1\|2827220_2827682_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.2e-46	74.2
WP_025389870.1\|2827668_2828970_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	5.3e-145	59.0
WP_025389871.1\|2828966_2830388_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.7e-217	78.0
WP_025389872.1\|2830362_2831451_+\|head	head morphogenesis protein	A0A1B0VMF3	Pseudomonas_phage	7.1e-151	73.8
WP_025389873.1\|2831458_2832040_-	hypothetical protein	NA	NA	NA	NA
WP_010430535.1\|2832197_2832926_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.1e-118	92.6
WP_002553404.1\|2832938_2833889_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.6e-157	88.2
WP_025389874.1\|2833913_2834363_+	hypothetical protein	NA	NA	NA	NA
WP_025389875.1\|2834366_2834867_+	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	6.5e-67	78.2
WP_025389876.1\|2834883_2835252_+	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.0e-41	70.0
WP_025389877.1\|2835248_2835905_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	5.7e-79	67.0
WP_025389878.1\|2835901_2836312_+	hypothetical protein	A0A2H4J130	uncultured_Caudovirales_phage	2.3e-33	54.1
WP_025389879.1\|2836383_2837040_+\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	2.6e-95	83.0
WP_025389880.1\|2837043_2837427_+	hypothetical protein	A0A2H4J9Y6	uncultured_Caudovirales_phage	4.7e-41	63.8
WP_025389881.1\|2837489_2837738_+	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	7.5e-24	67.1
WP_025389882.1\|2837748_2841213_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	4.6e-244	51.7
WP_025389883.1\|2841212_2841524_+	hypothetical protein	NA	NA	NA	NA
WP_025389884.1\|2841513_2841852_+\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	6.4e-50	80.4
WP_025389885.1\|2841861_2842611_+\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	3.1e-121	81.5
WP_025389886.1\|2842613_2843378_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	1.0e-127	79.7
WP_025389887.1\|2843529_2843790_-	hypothetical protein	NA	NA	NA	NA
WP_025389888.1\|2843872_2844145_-	hypothetical protein	NA	NA	NA	NA
WP_025389889.1\|2844300_2844759_+	hypothetical protein	NA	NA	NA	NA
WP_025389890.1\|2844801_2845380_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	5.5e-86	81.8
WP_025389892.1\|2845805_2849513_+\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	59.2
WP_025389893.1\|2849514_2849817_+	hypothetical protein	NA	NA	NA	NA
WP_025389894.1\|2849816_2850683_+	hypothetical protein	NA	NA	NA	NA
WP_025389895.1\|2850698_2852078_+\|tail	tail fiber domain-containing protein	A0A0S2SY45	Pseudomonas_phage	2.1e-22	39.7
WP_025389896.1\|2852142_2852676_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.3e-85	87.6
WP_025389897.1\|2852672_2853200_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	2.4e-67	87.4
WP_025389898.1\|2853212_2853425_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	1.7e-16	64.3
WP_080274935.1\|2854431_2854668_+	hypothetical protein	A0A059VA35	Pseudomonas_phage	1.1e-29	84.6
WP_025389899.1\|2854684_2855035_-	hypothetical protein	NA	NA	NA	NA
WP_025389900.1\|2855472_2856528_-	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	6.0e-38	30.6
WP_025389901.1\|2856612_2857701_-	molybdenum ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.0e-16	28.7

DBSCAN-SWA_6

3538038 : 3545873

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025390166.1\|3538038_3539340_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.5e-62	35.9
WP_024646593.1\|3539651_3540044_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.3e-57	82.3
WP_025390167.1\|3540045_3540408_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.7e-38	64.2
WP_025390168.1\|3540407_3540707_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.3e-26	59.6
WP_025390169.1\|3540703_3541039_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	76.6
WP_025390170.1\|3541035_3542037_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.2e-164	83.5
WP_025390171.1\|3542145_3543144_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_025390172.1\|3543197_3544592_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_024646600.1\|3544592_3545873_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-98	53.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage