CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021839	Listeria monocytogenes, complete sequence	2 crisprs	WYL,casR,RT,cas3,DEDDh,DinG,csa3	0	0	6	0
NC_022046	Listeria monocytogenes plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021839_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021839_1

264835-265419

Orphan

Consensus_repeat	Method
GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NC_021839_1

>merge|NC_021839|1|264835-265419|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NC_021839|1|1|264835-265419|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021839.1\|WP_003740435.1\|269211_269517_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NC_021839.1\|WP_003725203.1\|272596_273574_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_021839.1\|WP_003725196.1\|268205_268679_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003725190.1\|256808_257909_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NC_021839.1\|WP_003725186.1\|249383_251543_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NC_021839.1\|WP_003734774.1\|272271_272514_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003740432.1\|260087_261626_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NC_021839.1\|WP_003740428.1\|253795_255391_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_021839.1\|WP_003740437.1\|273677_273983_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003725195.1\|266382_268140_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021839.1\|WP_003725191.1\|257901_259452_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NC_021839.1\|WP_003725202.1\|271520_271865_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003725199.1\|269592_269859_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003734772.1\|270593_271211_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003725185.1\|248511_249267_-\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NC_021839.1\|WP_003725193.1\|261888_264042_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021839.1\|WP_003721242.1\|252692_253640_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_021839.1\|WP_003721253.1\|268698_269184_+\|hypothetical-protein	unknown	unknown	unknown
NC_021839.1\|WP_003725187.1\|251539_252688_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_021839.1\|WP_003725189.1\|255524_256808_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377

Protein	Function_ID	Function_description	E-value
NC_021839.1\|WP_003740435.1\|269211_269517_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.51255e-05
NC_021839.1\|WP_003725190.1\|256808_257909_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NC_021839.1\|WP_003725186.1\|249383_251543_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NC_021839.1\|WP_003740432.1\|260087_261626_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	3.38659e-18
NC_021839.1\|WP_003740428.1\|253795_255391_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NC_021839.1\|WP_003725195.1\|266382_268140_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	9.55447e-30
NC_021839.1\|WP_003725191.1\|257901_259452_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	8.20791e-106
NC_021839.1\|WP_003725203.1\|272596_273574_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.27048e-44
NC_021839.1\|WP_003725185.1\|248511_249267_-\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.72643e-122
NC_021839.1\|WP_003725193.1\|261888_264042_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.0912e-32
NC_021839.1\|WP_003721242.1\|252692_253640_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NC_021839.1\|WP_003725187.1\|251539_252688_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	8.61251e-53
NC_021839.1\|WP_003725189.1\|255524_256808_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96

>NC_021839.1|WP_003725193.1|261888_264042_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELSSLDTSNIIAEEVAQEKPAEVENLEEIPTTDELMQNPDVREQPVADSDNPDLTVVSSGAYWTIYRNTVNGEYSLHMFGNVPSSIPSAWKSYLSNIKHIEIEEATLTGSFETYFKSKIGGFLALESVRIERSNLSGVTSFREAFFNPILQKVIIRDNDYPTVPSLLTMESMFENSYNLTELDVSGLDTSAVTNMKNMFYKCSVLKELDLSNWDTSAVNNMNSMFGYCESLEKLNVSNFDTSSVNDMHYMFRDCKALEKLDVSDFDTSSVTTMYGMFVNSTSLKELDVSNFNTSSVTTMQGMFSTCRALEKLDVSNFDTSSVTTMLGMFAACNSLEELDVSNFDTSSVTNMYSMFADCELLEKLDVSHFDTSSVTDMRTMFNNCQSLEKLDVSNFDTSLVTNMQGMFQNCTALKSLYLDNFTTAKTMTDMFTGTTSLTYLFVSHNLQSFYGLANTNWYDEKNWVQFSNLSQLQTYHRNQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVVIPASISLNETSELKVEGINRGSKTLSVGLNQLATSISESNKLTLANTADTTVQCLAPLSWDGSENNPENAILTLAPGSEITEGDAVVEIESPENIQAGKYTGNLVFSINYE
>NC_021839.1|WP_003740432.1|260087_261626_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELSERNLYISTGNQVEITGDEFSLRIFYTFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMDSLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEILNQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NC_021839.1|WP_003725191.1|257901_259452_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSLVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NC_021839.1|WP_003725190.1|256808_257909_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVNFEPLEELVKKEERRHV
>NC_021839.1|WP_003725189.1|255524_256808_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NC_021839.1|WP_003740428.1|253795_255391_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NC_021839.1|WP_003721242.1|252692_253640_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NC_021839.1|WP_003725187.1|251539_252688_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSKLQDISTAFAEIAPVDNLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKSMDAPAIFLEPASLLSRWEREAK
>NC_021839.1|WP_003725186.1|249383_251543_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NC_021839.1|WP_003725185.1|248511_249267_-|DUF4866-domain-containing-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NC_021839.1|WP_003725195.1|266382_268140_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSLDTSNIIAEEVAQEKPAEVEQLEEIPITDELMQNPDVLEQPVADSDDTDLTVVSSGDFWTIYRNTVNNEYSLCMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFEAYFRGTVFTVLESVRIEQCNLSGVTSFDMAFYNSGIEKVIIRDNDYPTAPSLLATTYMFSLCRNLSELDLSGLDTSAVTNIYGMFQNCISLEELDLSNFDTSSVTNMYSTFSGCRSLEKLDVSNFDTSSVTNMQFMFEKCSSLEELDLSNFDTSSVTTMSYMFQLCPALKSLYLDNFTDAAIMTGMFGGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPTGYRKGAFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWDEIVPVKEGHYFDGWYLNQDCTNKFDFSLPADASITIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTAMSVSESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNVVFSIKYE
>NC_021839.1|WP_003725196.1|268205_268679_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NC_021839.1|WP_003721253.1|268698_269184_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NC_021839.1|WP_003740435.1|269211_269517_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NC_021839.1|WP_003725199.1|269592_269859_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NC_021839.1|WP_003734772.1|270593_271211_+|hypothetical-protein
MLMSLSVLPLATYASETENTPTESYDGENFIATQTGNTLVIEDKKTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIATQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMGAKTLYVRVKQYRTSGYQFYKYDSYYYANASLTKLVKKTSQTKRMW
>NC_021839.1|WP_003725202.1|271520_271865_+|hypothetical-protein
MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYAPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTME
>NC_021839.1|WP_003734774.1|272271_272514_+|hypothetical-protein
MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLICFLATGIVNVKKKEYLWSTMLFEGVLVVLLSLIIVLV
>NC_021839.1|WP_003725203.1|272596_273574_-|HD-domain-containing-protein
MKMTDPLYGTFEIEPVLAELIQSPLVSRLAHVHQGGASYLVNPLWDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQIFEDFVKTSTIPAILEKYGYSFEGIFEDISKWKILEQEAPELCADRIDYTLQDLYRHRKISLAEVEGFLQALVMVNGRLYLANISSAEWFVKQYYSEVIDYFYDPLNVYSYEILAEAMRIAFQQETITTDDLRLTDAELLAKLNANSDAREKIQLLASVHLEENEVDFTYHHKKKMRLINPSVLVDGRLIPADELSEKVREMNDWASERSKHGIYIKATKKSKQ
>NC_021839.1|WP_003740437.1|273677_273983_+|hypothetical-protein
MAEDAIDKMKTNSGSVIIPDETSVVVKIFRDKIDLVANAIGTSIYQIKRDEALQDAEQKAREQPTLAGSVTDSIEVVEEIPLVHHLANAPRLRMKVVGNLV

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Crispr_ID: NC_021839_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021839_2

2918469-2918623

Unclear

Consensus_repeat	Method
TTTCCACCACCGCCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_021839_2

>merge|NC_021839|2|2918469-2918623|CRISPRCasFinder
TTTCCACCACCGCCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

>NC_021839|2|1|2918469-2918623|CRISPRCasFinder
TTTCCACCACCGCCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	ACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTCATTCGAA
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021839.1\|WP_003725734.1\|2921028_2921490_+\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NC_021839.1\|WP_003722728.1\|2910838_2911795_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_021839.1\|WP_003725737.1\|2924641_2925226_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_021839.1\|WP_003725733.1\|2920572_2920896_+\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NC_021839.1\|WP_003740375.1\|2912824_2913778_-\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497
NC_021839.1\|WP_003722739.1\|2922693_2923635_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NC_021839.1\|WP_003725507.1\|2906400_2907609_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_021839.1\|WP_003725735.1\|2921542_2921875_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NC_021839.1\|WP_003725738.1\|2925332_2925893_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_021839.1\|WP_003734712.1\|2919631_2920501_+\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NC_021839.1\|WP_003722740.1\|2923928_2924552_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NC_021839.1\|WP_003722723.1\|2905711_2906404_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_021839.1\|WP_003740377.1\|2921941_2922661_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NC_021839.1\|WP_023558301.1\|2926006_2929546_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_021839.1\|WP_003722725.1\|2908292_2908601_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021839.1\|WP_003740376.1\|2914020_2915610_+\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NC_021839.1\|WP_003722729.1\|2911838_2912552_-\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NC_021839.1\|WP_003722726.1\|2908719_2909028_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021839.1\|WP_003725730.1\|2915944_2917477_+\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NC_021839.1\|WP_003740374.1\|2909414_2910788_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643

Protein	Function_ID	Function_description	E-value
NC_021839.1\|WP_003725734.1\|2921028_2921490_+\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.52192e-59
NC_021839.1\|WP_003722728.1\|2910838_2911795_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_021839.1\|WP_003725737.1\|2924641_2925226_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9401e-09
NC_021839.1\|WP_003725733.1\|2920572_2920896_+\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	2.43993e-44
NC_021839.1\|WP_003740375.1\|2912824_2913778_-\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	6.72035e-112
NC_021839.1\|WP_003722739.1\|2922693_2923635_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NC_021839.1\|WP_003725507.1\|2906400_2907609_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.06393e-62
NC_021839.1\|WP_003725735.1\|2921542_2921875_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NC_021839.1\|WP_003725738.1\|2925332_2925893_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.72721e-108
NC_021839.1\|WP_003734712.1\|2919631_2920501_+\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	6.38793e-86
NC_021839.1\|WP_003722740.1\|2923928_2924552_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NC_021839.1\|WP_003722723.1\|2905711_2906404_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NC_021839.1\|WP_003740377.1\|2921941_2922661_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	9.75553e-22
NC_021839.1\|WP_023558301.1\|2926006_2929546_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_021839.1\|WP_003722725.1\|2908292_2908601_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NC_021839.1\|WP_003740376.1\|2914020_2915610_+\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	3.16652e-179
NC_021839.1\|WP_003722729.1\|2911838_2912552_-\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NC_021839.1\|WP_003722726.1\|2908719_2909028_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NC_021839.1\|WP_003725730.1\|2915944_2917477_+\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	3.62455e-140
NC_021839.1\|WP_003740374.1\|2909414_2910788_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0

>NC_021839.1|WP_003725730.1|2915944_2917477_+|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKIAFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NC_021839.1|WP_003740376.1|2914020_2915610_+|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFHKENLISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNSVDNPIE
>NC_021839.1|WP_003740375.1|2912824_2913778_-|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKYGMQFGASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NC_021839.1|WP_003722729.1|2911838_2912552_-|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NC_021839.1|WP_003722728.1|2910838_2911795_+|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NC_021839.1|WP_003740374.1|2909414_2910788_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIEPGVMLHGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYAKHLNHGK
>NC_021839.1|WP_003722726.1|2908719_2909028_+|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NC_021839.1|WP_003722725.1|2908292_2908601_+|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NC_021839.1|WP_003725507.1|2906400_2907609_+|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NC_021839.1|WP_003722723.1|2905711_2906404_+|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NC_021839.1|WP_003734712.1|2919631_2920501_+|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRFCSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NC_021839.1|WP_003725733.1|2920572_2920896_+|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKEIECLGSCKIKNTNQKIHFFSIKKNLFEEKGNMAGILNEHERKGADKSIFIVILDDEKGIANEE
>NC_021839.1|WP_003725734.1|2921028_2921490_+|YehR-family-lipoprotein
MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NC_021839.1|WP_003725735.1|2921542_2921875_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NC_021839.1|WP_003740377.1|2921941_2922661_-|DNA-alkylation-repair-protein
MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQIEKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NC_021839.1|WP_003722739.1|2922693_2923635_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NC_021839.1|WP_003722740.1|2923928_2924552_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NC_021839.1|WP_003725737.1|2924641_2925226_+|GNAT-family-N-acetyltransferase
MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEKYVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA
>NC_021839.1|WP_003725738.1|2925332_2925893_+|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NC_021839.1|WP_023558301.1|2926006_2929546_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSRMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

874845 : 881768

Bacillus_virus(33.33%)

integrase

attL 864256:864269|attR 882347:882360

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
864256:864269	attL	NA	NA	NA	NA
WP_003724632.1\|874845_876336_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.8e-113	49.5
WP_003727000.1\|876347_877172_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003724634.1\|877184_877493_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003724635.1\|877552_877957_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012681222.1\|878085_879642_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1
WP_003724637.1\|879837_880317_-	helix-turn-helix transcriptional regulator	A0A2H4JDE4	uncultured_Caudovirales_phage	7.3e-07	34.3
WP_003724638.1\|880494_880692_+	LysR family transcriptional regulator	Q8SBM7	Clostridium_phage	1.5e-06	46.3
WP_003740555.1\|880694_881768_+\|integrase	site-specific integrase	A0A0A8WF08	Clostridium_phage	5.5e-87	46.5
882347:882360	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1032800 : 1089653

Bacillus_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003734523.1\|1032800_1033940_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1034019_1034415_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1034565_1034781_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|1034904_1035438_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|1035453_1036119_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|1036380_1037319_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1037433_1038717_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1038901_1040161_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003726393.1\|1040279_1040846_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003726394.1\|1040880_1041450_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003727520.1\|1041551_1042094_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726396.1\|1042103_1042967_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727519.1\|1042963_1043749_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003727518.1\|1043882_1044743_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003727517.1\|1045015_1047094_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003726401.1\|1047156_1048461_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003731303.1\|1048743_1049646_+	tyrosine recombinase XerC	A0A142K7N4	Mycobacterium_phage	1.8e-14	29.5
WP_003724001.1\|1049666_1050206_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003727514.1\|1050219_1051629_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	7.5e-44	27.8
WP_003726695.1\|1051649_1052429_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003726696.1\|1052532_1052952_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1052974_1053286_+	hypothetical protein	NA	NA	NA	NA
WP_003726697.1\|1053288_1054161_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003726698.1\|1054202_1054799_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003726699.1\|1054956_1055364_+	CoA-binding protein	NA	NA	NA	NA
WP_003727510.1\|1055544_1057512_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003734522.1\|1057508_1059968_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.6
WP_003726814.1\|1060051_1060519_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_020830742.1\|1061145_1062966_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003734520.1\|1062998_1064885_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	2.9e-43	32.2
WP_003726657.1\|1065097_1065796_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_003723738.1\|1066028_1067705_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003726658.1\|1067831_1068749_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1068870_1069104_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_012681271.1\|1069214_1070438_+	GTPase HflX	NA	NA	NA	NA
WP_003727505.1\|1070430_1071657_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1071858_1072227_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1072297_1073632_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003726564.1\|1073775_1075071_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	2.5e-147	62.6
WP_003726565.1\|1075104_1075629_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1075659_1076274_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003726566.1\|1076430_1076760_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003726567.1\|1076853_1077081_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003734516.1\|1077227_1079222_+	transketolase	NA	NA	NA	NA
WP_003726667.1\|1079442_1079682_+	YneF family protein	NA	NA	NA	NA
WP_003726668.1\|1079730_1080462_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726669.1\|1080483_1080990_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003726670.1\|1080999_1082304_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	4.7e-133	51.9
WP_012681273.1\|1082293_1083499_-	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003726672.1\|1083476_1083851_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1084143_1084872_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1084871_1085429_+	ribosome recycling factor	NA	NA	NA	NA
WP_031642179.1\|1085659_1086418_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	3.3e-22	42.1
WP_003727496.1\|1086431_1087220_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003726414.1\|1087234_1088377_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003726415.1\|1088390_1089653_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1580756 : 1589042

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1580756_1581323_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1581319_1582369_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_023557534.1\|1582387_1583815_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.6e-54	32.2
WP_003726211.1\|1583799_1586019_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.5e-158	40.7
WP_003726212.1\|1586011_1586695_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003726213.1\|1586698_1586944_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726214.1\|1586955_1587669_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
WP_003726215.1\|1587749_1589042_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_4

2121068 : 2161568

Listeria_phage(91.38%)

terminase,plate,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725136.1\|2121068_2121302_-	hypothetical protein	A8ATC5	Listeria_phage	1.2e-34	92.2
WP_003725049.1\|2121547_2122372_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_003725050.1\|2122373_2123174_-	hypothetical protein	NA	NA	NA	NA
WP_003740832.1\|2123297_2124167_-	N-acetylmuramoyl-L-alanine amidase family protein	A8ASL5	Listeria_phage	7.1e-170	98.3
WP_020830702.1\|2124166_2124448_-\|holin	phage holin	A0A059T664	Listeria_phage	5.1e-45	98.9
WP_003733957.1\|2124447_2124753_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003740843.1\|2124793_2124940_-	XkdX family protein	A0A0B5CYN8	Listeria_phage	1.5e-19	100.0
WP_003725055.1\|2124940_2125282_-	hypothetical protein	A8ASL1	Listeria_phage	4.2e-57	100.0
WP_003740845.1\|2125278_2126352_-\|plate	BppU family phage baseplate upper protein	A0A0B5D119	Listeria_phage	2.5e-196	100.0
WP_010991151.1\|2126348_2127377_-	hypothetical protein	A0A0B5D0C2	Listeria_phage	2.2e-194	100.0
WP_003740854.1\|2127373_2128387_-\|tail	phage tail protein	A0A0B5CYL4	Listeria_phage	1.2e-187	100.0
WP_003740856.1\|2128399_2129224_-\|tail	phage tail family protein	A0A0B5CTY7	Listeria_phage	8.6e-157	98.9
WP_023558327.1\|2129227_2134030_-\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	87.0
WP_041197791.1\|2134034_2134310_-	hypothetical protein	A0A0B5D116	Listeria_phage	2.2e-40	94.5
WP_020830700.1\|2134342_2134774_-	hypothetical protein	A8ATV7	Listeria_phage	7.8e-69	94.4
WP_041197790.1\|2134822_2135062_-	Ig-like domain-containing protein	A8ASK3	Listeria_phage	4.0e-30	88.6
WP_003723782.1\|2135084_2135516_-	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	8.1e-58	82.9
WP_003740885.1\|2135487_2135892_-	hypothetical protein	A8ATV5	Listeria_phage	1.2e-63	99.2
WP_003740887.1\|2135888_2136206_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	1.6e-47	91.4
WP_003740888.1\|2136195_2136561_-	hypothetical protein	A8ATV3	Listeria_phage	2.7e-62	95.0
WP_003740890.1\|2136560_2136914_-	hypothetical protein	A8ATV2	Listeria_phage	2.4e-60	98.3
WP_003723786.1\|2136914_2137070_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_023558325.1\|2137083_2137971_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	3.5e-156	95.3
WP_003740894.1\|2137993_2138548_-	hypothetical protein	A8ATU9	Listeria_phage	1.7e-84	89.1
WP_003725070.1\|2138642_2139686_-	hypothetical protein	A0A0B5D111	Listeria_phage	4.8e-197	98.0
WP_003740896.1\|2139690_2141247_-	hypothetical protein	A8ATU7	Listeria_phage	4.8e-294	96.7
WP_043993229.1\|2141261_2142608_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	2.9e-263	99.1
WP_003740918.1\|2142573_2143314_-	hypothetical protein	A0A0B5CTX0	Listeria_phage	1.2e-133	98.8
WP_003740921.1\|2143353_2143581_-	hypothetical protein	A8AU06	Listeria_phage	6.8e-32	93.3
WP_020830697.1\|2143851_2144424_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	1.3e-90	88.4
WP_003722548.1\|2144511_2144667_-	hypothetical protein	A0A0B5D186	Listeria_phage	3.3e-22	96.1
WP_020830696.1\|2144685_2145099_-	DUF2481 family protein	A8ASP8	Listeria_phage	1.6e-18	44.2
WP_041197789.1\|2145102_2145507_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	9.9e-58	85.8
WP_003727772.1\|2145451_2145634_-	hypothetical protein	A8ASP6	Listeria_phage	8.5e-17	79.4
WP_020830694.1\|2145653_2146136_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.1e-76	92.5
WP_020830693.1\|2146135_2146414_-	hypothetical protein	NA	NA	NA	NA
WP_020830692.1\|2146410_2146812_-	hypothetical protein	A0A059T6C9	Listeria_phage	1.9e-53	76.7
WP_003725081.1\|2147029_2147218_-	SAM--benzoic acid carboxyl methyltransferase	D7RWG4	Brochothrix_phage	4.4e-08	49.1
WP_003725082.1\|2147221_2147605_-	hypothetical protein	D2IZL0	Enterococcus_phage	2.3e-19	66.7
WP_003725137.1\|2147591_2147798_-	hypothetical protein	NA	NA	NA	NA
WP_003725083.1\|2147794_2148355_-	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	9.2e-70	72.0
WP_003725084.1\|2148351_2148624_-	hypothetical protein	A0A059T6G3	Listeria_phage	3.6e-35	91.6
WP_003740958.1\|2148620_2149535_-	hypothetical protein	I1W658	Staphylococcus_phage	5.1e-17	39.3
WP_003740960.1\|2149564_2150380_-	recombinase RecT	A0A0B5CTU3	Listeria_phage	1.3e-149	98.9
WP_003740962.1\|2150379_2151339_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.3e-177	98.7
WP_003727753.1\|2151571_2151760_-	hypothetical protein	A0A0B5CU43	Listeria_phage	1.0e-28	98.4
WP_020830690.1\|2151862_2152069_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020830689.1\|2152058_2152589_-	hypothetical protein	A8ATY1	Listeria_phage	1.9e-77	86.7
WP_020830688.1\|2152710_2153487_-	phage antirepressor KilAC domain-containing protein	A0A0B5D0I2	Listeria_phage	1.1e-142	100.0
WP_003727749.1\|2153550_2153793_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.8e-38	100.0
WP_003727748.1\|2153785_2153947_-	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
WP_003727747.1\|2153978_2154260_-	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
WP_003733634.1\|2154256_2154493_-	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_003733687.1\|2154504_2154699_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003725143.1\|2154872_2155175_-	hypothetical protein	NA	NA	NA	NA
WP_003725096.1\|2155191_2155368_-	hypothetical protein	Q9T184	Listeria_phage	3.7e-09	98.3
WP_003741072.1\|2155371_2155590_-	helix-turn-helix transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	1.2e-06	44.0
WP_003725140.1\|2155736_2155970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020830686.1\|2155984_2156248_+	hypothetical protein	NA	NA	NA	NA
WP_003725144.1\|2156207_2156393_-	hypothetical protein	NA	NA	NA	NA
WP_003725098.1\|2156397_2156667_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	3.9e-34	86.5
WP_003725099.1\|2156815_2157124_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	1.6e-47	99.0
WP_003725100.1\|2157154_2157646_+	hypothetical protein	A8ATX4	Listeria_phage	7.0e-90	98.2
WP_003725101.1\|2157668_2157887_+	zinc ribbon domain-containing protein	A0A059T6E3	Listeria_phage	2.3e-32	95.8
WP_020830685.1\|2157901_2158507_+	hypothetical protein	NA	NA	NA	NA
WP_003725102.1\|2158568_2159276_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	4.8e-116	93.6
WP_020830684.1\|2159340_2160699_+	recombinase family protein	Q9T193	Listeria_phage	1.8e-252	97.1
WP_003741076.1\|2160689_2161166_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|2161220_2161568_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_5

2304626 : 2312471

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2304626_2305598_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003725408.1\|2305605_2306574_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.9e-68	43.3
WP_003722606.1\|2306575_2307451_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003725409.1\|2307558_2309289_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
WP_003741152.1\|2309330_2310392_-	galactose mutarotase	NA	NA	NA	NA
WP_003725411.1\|2310408_2311392_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.0e-52	38.1
WP_003722610.1\|2311511_2312471_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_6

2834897 : 2841424

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|2834897_2835350_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|2835355_2835691_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|2835907_2836336_+	hypothetical protein	NA	NA	NA	NA
WP_003724947.1\|2836347_2836764_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	38.6
WP_003728212.1\|2837043_2837433_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|2837445_2837958_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|2838005_2838308_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|2838349_2838754_+	hypothetical protein	NA	NA	NA	NA
WP_003731178.1\|2838740_2840609_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003724951.1\|2840605_2841424_+\|tail	phage tail family protein	A0A2H4JAE4	uncultured_Caudovirales_phage	1.7e-40	34.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_022046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 42938

Streptococcus_phage(22.73%)

integrase,transposase

attL 3712:3729|attR 42185:42202

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023558755.1\|371_644_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_023558757.1\|686_1058_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_023558759.1\|1072_1567_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_031642114.1\|2327_3638_-	MATE family efflux transporter	NA	NA	NA	NA
3712:3729	attL	NA	NA	NA	NA
WP_003759224.1\|3766_4447_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.5e-93	69.9
WP_023558764.1\|4506_5010_+\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	6.6e-19	35.9
WP_003726382.1\|5041_5422_+	hypothetical protein	NA	NA	NA	NA
WP_003726381.1\|5654_7772_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.3e-235	62.6
WP_003726380.1\|7768_8128_-	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	5.4e-23	48.2
WP_003725299.1\|8401_9001_-	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	1.8e-15	31.8
WP_003725298.1\|9159_10596_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	9.4e-18	24.8
WP_023558766.1\|10588_10969_+	AAA family ATPase	NA	NA	NA	NA
WP_023558770.1\|12072_12996_+	EamA family transporter	NA	NA	NA	NA
WP_023558772.1\|13515_14664_+	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	3.1e-11	24.6
WP_106490519.1\|14976_15864_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.9e-69	51.6
WP_023558776.1\|15860_16115_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	9.4e-14	47.6
WP_023558780.1\|16308_16722_+	hypothetical protein	NA	NA	NA	NA
WP_023558782.1\|16765_17332_-	hypothetical protein	NA	NA	NA	NA
WP_023558784.1\|17600_17945_+	hypothetical protein	NA	NA	NA	NA
WP_023558786.1\|17932_19213_+	Y-family DNA polymerase	O64031	Bacillus_phage	1.8e-92	45.1
WP_003728502.1\|19263_19560_-	hypothetical protein	NA	NA	NA	NA
WP_003728501.1\|19537_20512_-	AAA family ATPase	F0PIG8	Enterococcus_phage	2.4e-33	35.0
WP_003728500.1\|21251_22886_+	primase C-terminal domain-containing protein	NA	NA	NA	NA
WP_023558788.1\|22986_23151_+	hypothetical protein	NA	NA	NA	NA
WP_023558793.1\|23602_24190_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.9e-33	41.7
WP_031642142.1\|24281_25037_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-80	62.8
WP_003755396.1\|25047_26274_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.2e-135	60.6
WP_171878362.1\|26782_27208_+	hypothetical protein	NA	NA	NA	NA
WP_023558800.1\|27210_28128_+	hypothetical protein	NA	NA	NA	NA
WP_003728492.1\|28492_28732_+	hypothetical protein	NA	NA	NA	NA
WP_012952171.1\|28743_29184_+	hypothetical protein	NA	NA	NA	NA
WP_023558802.1\|29176_30517_+	hypothetical protein	NA	NA	NA	NA
WP_023558804.1\|30527_30890_+	hypothetical protein	NA	NA	NA	NA
WP_023558806.1\|30909_31674_+	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4
WP_003728487.1\|31787_32318_+	hypothetical protein	NA	NA	NA	NA
WP_023558808.1\|32354_32690_-	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_011011011.1\|32863_33262_+	hypothetical protein	NA	NA	NA	NA
WP_012952173.1\|33974_34319_+	TnpV protein	NA	NA	NA	NA
WP_072235488.1\|34360_34768_+	hypothetical protein	H2DE57	Erwinia_phage	1.4e-11	46.0
WP_013315180.1\|36087_36843_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.4e-81	63.2
WP_011011055.1\|36920_37214_-	DUF3116 family protein	NA	NA	NA	NA
WP_011011054.1\|37230_38385_-	cation:proton antiporter	NA	NA	NA	NA
WP_023558820.1\|38531_39770_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.3e-121	55.5
WP_031642122.1\|39791_40151_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.7e-08	31.7
WP_023558824.1\|40150_40537_-	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	6.2e-09	34.4
WP_023558827.1\|40548_41184_-	DUF190 domain-containing protein	NA	NA	NA	NA
WP_176723416.1\|42039_42210_+	hypothetical protein	NA	NA	NA	NA
42185:42202	attR	NA	NA	NA	NA
WP_011011045.1\|42257_42938_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.5e-93	69.5

DBSCAN-SWA_2

49483 : 51558

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023558842.1\|49483_50164_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-35	36.2
WP_023558844.1\|50163_51558_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	9.4e-39	32.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021839

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_022046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection