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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018202 Pseudomonas syringae pv. actinidiae ICMP 9853, complete genome 4 crisprs DEDDh,csa3,RT,PD-DExK,cas3,DinG 1 1 31 2
NZ_CP018203 Pseudomonas syringae pv. actinidiae ICMP 9853 plasmid p9853_A, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018204 Pseudomonas syringae pv. actinidiae ICMP 9853 plasmid p9853_B, complete sequence 1 crisprs NA 0 1 5 0

Results visualization

1. NZ_CP018202
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018202_1 1622395-1622559 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018202_2 3906795-3906958 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018202_3 4646973-4647074 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018202_4 5452145-5452305 Orphan NA
1 spacers
RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP018202_2 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder 3906849-3906904 56 NZ_CP018202.1 4657824-4657879 2 0.964

1. spacer 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder matches to position: 4657824-4657879, mismatch: 2, identity: 0.964

ccaactatcgtgcgacgctctgcgtcgcatgcctttctggacgctccgcgtcctct	CRISPR spacer
ccaaccatcgtgcgacgctctgcgtcgcatgccgttctggacgctccgcgtcctct	Protospacer
*****.*************************** **********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018202_2 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder 3906849-3906904 56 LT985194 Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP3 59779-59834 6 0.893
NZ_CP018202_2 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder 3906849-3906904 56 NZ_CP026560 Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence 39931-39986 6 0.893
NZ_CP018202_2 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder 3906849-3906904 56 NZ_LT963413 Pseudomonas syringae isolate CFBP3840 plasmid PP4, complete sequence 69403-69458 6 0.893

1. spacer 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder matches to LT985194 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP3) position: , mismatch: 6, identity: 0.893

ccaactatcgtgcgacgctctgcgtcgcatgcctttctggacgctccgcgtcctct	CRISPR spacer
tcgactatcgtgcgacgctccgcgtcgcatgccgttctggacgctccgcgtccgat	Protospacer
.*.*****************.************ *******************  *

2. spacer 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder matches to NZ_CP026560 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence) position: , mismatch: 6, identity: 0.893

ccaactatcgtgcgacgctctgcgtcgcatgcctttctggacgctccgcgtcctct	CRISPR spacer
tcgactatcgtgcgacgctccgcgtcgcatgccgttctggacgctccgcgtccgat	Protospacer
.*.*****************.************ *******************  *

3. spacer 2.1|3906849|56|NZ_CP018202|CRISPRCasFinder matches to NZ_LT963413 (Pseudomonas syringae isolate CFBP3840 plasmid PP4, complete sequence) position: , mismatch: 6, identity: 0.893

ccaactatcgtgcgacgctctgcgtcgcatgcctttctggacgctccgcgtcctct	CRISPR spacer
tcgactatcgtgcgacgctccgcgtcgcatgccgttctggacgctccgcgtccgat	Protospacer
.*.*****************.************ *******************  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 91100 : 142910 46 Mannheimia_phage(15.38%) tRNA,holin,protease,transposase NA
DBSCAN-SWA_2 275652 : 336320 53 Thermus_phage(25.0%) tRNA,holin,transposase NA
DBSCAN-SWA_3 341430 : 463741 114 Acinetobacter_phage(15.15%) tail,tRNA,transposase,integrase,lysis,plate attL 403807:403822|attR 454308:454323
DBSCAN-SWA_4 474852 : 534552 59 Leptospira_phage(22.22%) tRNA,integrase,transposase attL 491154:491168|attR 539409:539423
DBSCAN-SWA_5 748825 : 816827 59 Bacillus_virus(18.18%) transposase,bacteriocin NA
DBSCAN-SWA_6 918851 : 1060376 109 uncultured_Caudovirales_phage(14.29%) protease,transposase NA
DBSCAN-SWA_7 1081695 : 1123418 41 Acidithiobacillus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_8 1190220 : 1200408 10 Burkholderia_virus(37.5%) NA NA
DBSCAN-SWA_9 1287805 : 1294254 6 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_10 1406858 : 1478052 55 Acidithiobacillus_phage(37.5%) transposase NA
DBSCAN-SWA_11 1853317 : 1863268 8 uncultured_Mediterranean_phage(28.57%) transposase NA
DBSCAN-SWA_12 2168590 : 2233869 65 Pseudomonas_phage(57.14%) tail,transposase NA
DBSCAN-SWA_13 2469733 : 2514981 37 uncultured_Caudovirales_phage(46.67%) tRNA,integrase,transposase,protease attL 2459364:2459380|attR 2487453:2487469
DBSCAN-SWA_14 2719254 : 2796082 59 Bacillus_phage(18.18%) protease,transposase,plate NA
DBSCAN-SWA_15 2964761 : 3048448 57 Tupanvirus(12.5%) tRNA,protease,transposase NA
DBSCAN-SWA_16 3167010 : 3228833 49 Planktothrix_phage(16.67%) tRNA,integrase,transposase attL 3166534:3166551|attR 3196562:3196579
DBSCAN-SWA_17 3322424 : 3389151 54 Planktothrix_phage(27.27%) integrase,transposase attL 3342465:3342479|attR 3390045:3390059
DBSCAN-SWA_18 3478756 : 3509011 22 Leptospira_phage(66.67%) protease,transposase NA
DBSCAN-SWA_19 3512161 : 3672397 111 Planktothrix_phage(26.09%) transposase NA
DBSCAN-SWA_20 4016444 : 4032495 15 Pseudomonas_phage(83.33%) NA NA
DBSCAN-SWA_21 4226366 : 4290686 52 Staphylococcus_prophage(12.5%) transposase NA
DBSCAN-SWA_22 4370712 : 4400729 26 Leptospira_phage(54.55%) integrase,transposase attL 4372300:4372331|attR 4399120:4399151
DBSCAN-SWA_23 4467369 : 4534573 59 Acidithiobacillus_phage(28.57%) protease,transposase NA
DBSCAN-SWA_24 4614756 : 4681776 60 Bacillus_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_25 4687713 : 4744325 46 uncultured_Caudovirales_phage(18.18%) tRNA,integrase,transposase,protease attL 4681773:4681832|attR 4742737:4743203
DBSCAN-SWA_26 4780986 : 4821895 26 uncultured_Mediterranean_phage(28.57%) transposase NA
DBSCAN-SWA_27 5858965 : 5923408 57 Leptospira_phage(36.36%) transposase NA
DBSCAN-SWA_28 5926723 : 5981240 49 Bacillus_virus(33.33%) tRNA,integrase,transposase attL 5921780:5921839|attR 5965662:5967329
DBSCAN-SWA_29 5990825 : 6092191 100 uncultured_Caudovirales_phage(52.5%) integrase,holin,tail,protease,head,transposase,capsid,portal,plate,terminase attL 6022880:6022939|attR 6086060:6087726
DBSCAN-SWA_30 6225454 : 6290160 46 uncultured_Caudovirales_phage(28.57%) protease,transposase NA
DBSCAN-SWA_31 6343627 : 6412228 59 Bacillus_phage(35.71%) tRNA,integrase,transposase attL 6372232:6372247|attR 6409081:6409096
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Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP018202.1|WP_007245145.1|4616609_4616792_-|hypothetical-protein 4616609_4616792_- 60 aa aa NA NA NA 4614756-4681776 yes
NZ_CP018202.1|WP_003378916.1|4619052_4619358_+|hypothetical-protein 4619052_4619358_+ 101 aa aa NA NA NA 4614756-4681776 yes
2. NZ_CP018204
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018204_1 29791-29881 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP018204 Pseudomonas syringae pv. actinidiae ICMP 9853 plasmid p9853_B, complete sequence 29815-29857 0 1.0
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP019874 Pseudomonas syringae pv. tomato strain B13-200 plasmid pB13-200C, complete sequence 65595-65637 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP032632 Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 plasmid pM228, complete sequence 65377-65419 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP011973 Pseudomonas syringae pv. actinidiae ICMP 18884 plasmid unnamed, complete sequence 61079-61121 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP012180 Pseudomonas syringae pv. actinidiae ICMP 18708 plasmid unnamed, complete sequence 63507-63549 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP019733 Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 plasmid unnamed, complete sequence 51707-51749 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP017010 Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180a, complete sequence 61078-61120 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP017008 Pseudomonas syringae pv. actinidiae strain ICMP 20586 plasmid pPsa20586, complete sequence 61079-61121 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP019731 Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 plasmid unnamed, complete sequence 51708-51750 1 0.977
NZ_CP018204_1 1.1|29815|43|NZ_CP018204|CRISPRCasFinder 29815-29857 43 NZ_CP032870 Pseudomonas syringae pv. actinidiae strain P220 plasmid pLKQG722, complete sequence 59947-59989 1 0.977

1. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP018204 (Pseudomonas syringae pv. actinidiae ICMP 9853 plasmid p9853_B, complete sequence) position: , mismatch: 0, identity: 1.0

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
*******************************************

2. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP019874 (Pseudomonas syringae pv. tomato strain B13-200 plasmid pB13-200C, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

3. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP032632 (Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 plasmid pM228, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

4. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP011973 (Pseudomonas syringae pv. actinidiae ICMP 18884 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

5. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP012180 (Pseudomonas syringae pv. actinidiae ICMP 18708 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

6. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP019733 (Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

7. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP017010 (Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180a, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

8. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP017008 (Pseudomonas syringae pv. actinidiae strain ICMP 20586 plasmid pPsa20586, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

9. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP019731 (Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

10. spacer 1.1|29815|43|NZ_CP018204|CRISPRCasFinder matches to NZ_CP032870 (Pseudomonas syringae pv. actinidiae strain P220 plasmid pLKQG722, complete sequence) position: , mismatch: 1, identity: 0.977

cgaaccgacttaaggtggtggcgatccgtttttctcagaattt	CRISPR spacer
ccaaccgacttaaggtggtggcgatccgtttttctcagaattt	Protospacer
* *****************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6941 5 Morganella_phage(50.0%) NA NA
DBSCAN-SWA_2 12830 : 14397 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_3 23061 : 23607 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_4 27867 : 28848 1 Escherichia_phage(100.0%) transposase NA
DBSCAN-SWA_5 32344 : 32920 1 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage