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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_020291 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete sequence 12 crisprs RT,DEDDh,cas3,csa3,PD-DExK,WYL,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,cas14j 1 7 12 0
NC_020292 Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence 0 crisprs PD-DExK 0 0 0 0

Results visualization

1. NC_020291
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_1 629602-629699 Orphan II-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_2 629945-630175 Orphan NA:II-B
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_3 634173-634260 Orphan II-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_4 638183-638343 Orphan II-B
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_5 1174106-1174207 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_6 2066409-2066536 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_7 4306294-4306455 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_8 4341559-4341685 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_9 4375620-4375720 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_10 5276834-5278564 Unclear I-A:NA
26 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_11 5278601-5280855 Unclear I-A
34 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020291_12 6007076-6007161 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_020291_6 6.1|2066435|20|NC_020291|CRISPRCasFinder 2066435-2066454 20 NC_020291.1 2722980-2722999 1 0.95
NC_020291_6 6.1|2066435|20|NC_020291|CRISPRCasFinder 2066435-2066454 20 NC_020291.1 910586-910605 2 0.9
NC_020291_6 6.1|2066435|20|NC_020291|CRISPRCasFinder 2066435-2066454 20 NC_020291.1 4561423-4561442 2 0.9
NC_020291_6 6.1|2066435|20|NC_020291|CRISPRCasFinder 2066435-2066454 20 NC_020291.1 5926267-5926286 2 0.9

1. spacer 6.1|2066435|20|NC_020291|CRISPRCasFinder matches to position: 2722980-2722999, mismatch: 1, identity: 0.95

tagctgctctttttataagg	CRISPR spacer
tagctgctctttttataggg	Protospacer
*****************.**

2. spacer 6.1|2066435|20|NC_020291|CRISPRCasFinder matches to position: 910586-910605, mismatch: 2, identity: 0.9

tagctgctctttttataagg	CRISPR spacer
tagctgctctctttataggg	Protospacer
**********.******.**

3. spacer 6.1|2066435|20|NC_020291|CRISPRCasFinder matches to position: 4561423-4561442, mismatch: 2, identity: 0.9

tagctgctctttttataagg	CRISPR spacer
tagctgctttttttgtaagg	Protospacer
********.*****.*****

4. spacer 6.1|2066435|20|NC_020291|CRISPRCasFinder matches to position: 5926267-5926286, mismatch: 2, identity: 0.9

tagctgctctttttataagg	CRISPR spacer
tagctgctctctttataggg	Protospacer
**********.******.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 LT615366 Enterococcus phage VPE25 genome assembly, chromosome: VPE25 41134-41166 6 0.818
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 LT546029 Enterococcus phage VFW genome assembly, chromosome: VFW 41065-41097 6 0.818
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 LT546030 Enterococcus phage VPE25 genome assembly, chromosome: I 41134-41166 6 0.818
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 MT119361 Enterococus phage vipetofem, complete genome 44143-44175 6 0.818
NC_020291_11 11.12|5279349|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5279349-5279384 36 KJ019082 Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome 173350-173385 8 0.778
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 GQ478082 Enterococcus phage phiFL1B, complete genome 27079-27111 9 0.727
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 GQ478083 Enterococcus phage phiFL1C, complete genome 26807-26839 9 0.727
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 GQ478085 Enterococcus phage phiFL2B, complete genome 24911-24943 9 0.727
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 NC_013646 Enterococcus phage phiFL1A, complete genome 26855-26887 9 0.727
NC_020291_1 1.1|629634|33|NC_020291|CRISPRCasFinder 629634-629666 33 NC_013643 Enterococcus phage phiFL2A, complete genome 24355-24387 9 0.727
NC_020291_6 6.2|2066481|30|NC_020291|CRISPRCasFinder 2066481-2066510 30 CP046596 Acinetobacter indicus strain FS42-2 plasmid pFS42-2-1, complete sequence 74266-74295 9 0.7
NC_020291_12 12.1|6007102|34|NC_020291|CRISPRCasFinder 6007102-6007135 34 NZ_CP043762 Paenibacillus sp. 37 plasmid pART37, complete sequence 25632-25665 9 0.735
NC_020291_12 12.1|6007102|34|NC_020291|CRISPRCasFinder 6007102-6007135 34 NC_012961 Photorhabdus asymbiotica plasmid pPAU1, complete sequence 15903-15936 9 0.735
NC_020291_10 10.3|5276993|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5276993-5277029 37 LR721753 Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence 14844-14880 10 0.73
NC_020291_10 10.13|5277648|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5277648-5277684 37 NC_014557 Bacillus sp. BS-02 plasmid pBS-02, complete sequence 1095-1131 10 0.73
NC_020291_10 10.13|5277648|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5277648-5277684 37 NC_013963 Bacillus sp. BS-01 plasmid pBS-01, complete sequence 6898-6934 10 0.73
NC_020291_11 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5280594-5280629 36 NZ_CP007767 Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence 30031-30066 11 0.694
NC_020291_11 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5280594-5280629 36 NC_012040 Campylobacter lari RM2100 plasmid pCL2100, complete sequence 25962-25997 11 0.694
NC_020291_11 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder 5280594-5280629 36 NZ_CP044261 Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence 28716-28751 11 0.694

1. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 6, identity: 0.818

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ataaattatttttagctttgaataagattaatg	Protospacer
 *. ****** ************** ***** *

2. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 6, identity: 0.818

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ataaattatttttagctttgaataagattaatg	Protospacer
 *. ****** ************** ***** *

3. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 6, identity: 0.818

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ataaattatttttagctttgaataagattaatg	Protospacer
 *. ****** ************** ***** *

4. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to MT119361 (Enterococus phage vipetofem, complete genome) position: , mismatch: 6, identity: 0.818

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ataaattatttttagctttgaataagattaatg	Protospacer
 *. ****** ************** ***** *

5. spacer 11.12|5279349|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to KJ019082 (Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome) position: , mismatch: 8, identity: 0.778

tgattataattctttcaattctttaatttcttcaat	CRISPR spacer
ttctacttcttctttcaattctttgattgcttcaat	Protospacer
*  *  *  ***************.*** *******

6. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to GQ478082 (Enterococcus phage phiFL1B, complete genome) position: , mismatch: 9, identity: 0.727

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ctagctttttattagctttaaataacattccat	Protospacer
.*.  ** ***********.*********  * 

7. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to GQ478083 (Enterococcus phage phiFL1C, complete genome) position: , mismatch: 9, identity: 0.727

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ctagctttttattagctttaaataacattccat	Protospacer
.*.  ** ***********.*********  * 

8. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to GQ478085 (Enterococcus phage phiFL2B, complete genome) position: , mismatch: 9, identity: 0.727

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ctagctttttattagctttaaataacattccat	Protospacer
.*.  ** ***********.*********  * 

9. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to NC_013646 (Enterococcus phage phiFL1A, complete genome) position: , mismatch: 9, identity: 0.727

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ctagctttttattagctttaaataacattccat	Protospacer
.*.  ** ***********.*********  * 

10. spacer 1.1|629634|33|NC_020291|CRISPRCasFinder matches to NC_013643 (Enterococcus phage phiFL2A, complete genome) position: , mismatch: 9, identity: 0.727

ttgtattattattagctttgaataacattaaag	CRISPR spacer
ctagctttttattagctttaaataacattccat	Protospacer
.*.  ** ***********.*********  * 

11. spacer 6.2|2066481|30|NC_020291|CRISPRCasFinder matches to CP046596 (Acinetobacter indicus strain FS42-2 plasmid pFS42-2-1, complete sequence) position: , mismatch: 9, identity: 0.7

ttcttatatgcagatagtttccgtattgca	CRISPR spacer
ccagctgctgtagatagtttccgtattgca	Protospacer
..  .   **.*******************

12. spacer 12.1|6007102|34|NC_020291|CRISPRCasFinder matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 9, identity: 0.735

tggtt--gtaagtaataccaagttccattgtcattt	CRISPR spacer
--gtcagataagtcataccaagttccattctcacaa	Protospacer
  **.  .***** *************** ***.  

13. spacer 12.1|6007102|34|NC_020291|CRISPRCasFinder matches to NC_012961 (Photorhabdus asymbiotica plasmid pPAU1, complete sequence) position: , mismatch: 9, identity: 0.735

tggttgtaagtaataccaagttccattgtcattt	CRISPR spacer
acgtacccagtaataccaagtttcatcgtcatta	Protospacer
  **  . **************.***.****** 

14. spacer 10.3|5276993|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to LR721753 (Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence) position: , mismatch: 10, identity: 0.73

caacaact-----ggtggaagtagtggtggttcacatcattc	CRISPR spacer
-----gctttgaatgtggaaatagtggtggttctcatcatgc	Protospacer
     .**      ******.************ ****** *

15. spacer 10.13|5277648|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to NC_014557 (Bacillus sp. BS-02 plasmid pBS-02, complete sequence) position: , mismatch: 10, identity: 0.73

ttgtacaaaaatatcatcaatgataatgttataatca	CRISPR spacer
taattttacaatatcatcaatggtaaagttataatat	Protospacer
* .* . * *************.*** ********  

16. spacer 10.13|5277648|37|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to NC_013963 (Bacillus sp. BS-01 plasmid pBS-01, complete sequence) position: , mismatch: 10, identity: 0.73

ttgtacaaaaatatcatcaatgataatgttataatca	CRISPR spacer
taattttacaatatcatcaatggtaaagttataatat	Protospacer
* .* . * *************.*** ********  

17. spacer 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 11, identity: 0.694

ttgatgaacataaaattgatatgaataatatccatg	CRISPR spacer
aaaatgaaaataaaattgatatcaataattttagct	Protospacer
  .***** ************* ****** *. .. 

18. spacer 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to NC_012040 (Campylobacter lari RM2100 plasmid pCL2100, complete sequence) position: , mismatch: 11, identity: 0.694

ttgatgaacataaaattgatatgaataatatccatg	CRISPR spacer
aaaatgaaaataaaattgatatcaataattttagct	Protospacer
  .***** ************* ****** *. .. 

19. spacer 11.31|5280594|36|NC_020291|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044261 (Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence) position: , mismatch: 11, identity: 0.694

ttgatgaacataaaattgatatgaataatatccatg	CRISPR spacer
aaaatgaaaataaaattgatatcaataattttagct	Protospacer
  .***** ************* ****** *. .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 789315 : 862261 65 Clostridium_phage(83.33%) tRNA,plate,tail NA
DBSCAN-SWA_2 1066247 : 1197944 118 Clostridium_phage(74.58%) head,portal,terminase,capsid,integrase,transposase,protease,coat,tail attL 1087378:1087399|attR 1179522:1179543
DBSCAN-SWA_3 1269739 : 1279487 7 Cyanophage(28.57%) NA NA
DBSCAN-SWA_4 1358860 : 1367652 10 Pseudomonas_phage(12.5%) NA NA
DBSCAN-SWA_5 1497531 : 1507486 7 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_6 2672466 : 2682606 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_7 2907642 : 2937657 46 Clostridium_phage(18.75%) portal,capsid,integrase,coat,tail attL 2902083:2902099|attR 2938828:2938844
DBSCAN-SWA_8 2942215 : 2952705 12 Clostridium_phage(90.0%) plate,tail NA
DBSCAN-SWA_9 3970653 : 3980546 13 uncultured_Caudovirales_phage(28.57%) integrase attL 3962867:3962884|attR 3987312:3987329
DBSCAN-SWA_10 5934548 : 5943292 6 Catovirus(50.0%) NA NA
DBSCAN-SWA_11 6024362 : 6032530 7 uncultured_Caudovirales_phage(16.67%) NA NA
DBSCAN-SWA_12 6045223 : 6052500 7 Enterobacteria_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage