CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020212	Serratia marcescens WW4 plasmid pSmWW4, complete sequence	0 crisprs	NA	0	0	0	0
NC_020211	Serratia marcescens WW4, complete sequence	0 crisprs	RT,DEDDh,DinG,csa3,cas3,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2093135 : 2133377

uncultured_Caudovirales_phage(33.33%)

capsid,terminase,plate,integrase

attL 2093034:2093056|attR 2137341:2137363

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2093034:2093056	attL	NA	NA	NA	NA
WP_041922215.1\|2093135_2094218_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-99	51.0
WP_161727346.1\|2094192_2094456_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.2e-08	38.5
WP_015377486.1\|2094543_2095611_-	recombinase RecT	A0A2R9YJJ1	Escherichia_phage	3.0e-77	59.3
WP_015377487.1\|2095625_2098268_-	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	1.2e-143	39.4
WP_151262562.1\|2098430_2098661_-	hypothetical protein	NA	NA	NA	NA
WP_041922216.1\|2098772_2098934_-	DUF3927 family protein	A0A0A0YRI9	Escherichia_phage	4.9e-08	62.7
WP_015377488.1\|2098933_2099359_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.6e-58	84.4
WP_144062351.1\|2099453_2099762_-	hypothetical protein	NA	NA	NA	NA
WP_041922217.1\|2099843_2101295_-	ATP-binding protein	X5I2M2	Pseudomonas_phage	2.0e-193	69.7
WP_015377490.1\|2101405_2101600_-	hypothetical protein	NA	NA	NA	NA
WP_151262564.1\|2101737_2101917_-	hypothetical protein	NA	NA	NA	NA
WP_015377491.1\|2102254_2102443_-	hypothetical protein	NA	NA	NA	NA
WP_151262565.1\|2102552_2102981_-	hypothetical protein	NA	NA	NA	NA
WP_041922219.1\|2102977_2103367_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	2.1e-36	61.3
WP_041922220.1\|2103470_2103716_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	1.2e-26	74.4
WP_015377493.1\|2103727_2104189_+	hypothetical protein	H9C162	Pectobacterium_phage	2.8e-16	42.6
WP_041922221.1\|2104317_2105253_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	3.2e-35	39.8
WP_147095333.1\|2105203_2105740_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.9e-41	50.7
WP_015377495.1\|2105754_2106135_+	hypothetical protein	NA	NA	NA	NA
WP_015377496.1\|2106134_2106335_+	DUF1482 family protein	NA	NA	NA	NA
WP_015377497.1\|2106592_2106769_+	hypothetical protein	NA	NA	NA	NA
WP_015377498.1\|2106828_2107425_+	DUF1367 family protein	H9C173	Pectobacterium_phage	7.8e-59	55.6
WP_041922222.1\|2107421_2107706_+	DUF1364 domain-containing protein	H9C174	Pectobacterium_phage	4.1e-34	73.4
WP_015377499.1\|2107702_2108263_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.0e-49	52.8
WP_151262566.1\|2108401_2108683_+	hypothetical protein	NA	NA	NA	NA
WP_049810920.1\|2108856_2109555_+	hypothetical protein	A0A0C4UQZ7	Shigella_phage	2.5e-88	68.1
WP_015377501.1\|2109618_2109891_+	hypothetical protein	A0A1V0E5R8	Salmonella_phage	4.1e-31	74.4
WP_015377502.1\|2109890_2110385_+	lysozyme	A0A2H4FND7	Salmonella_phage	2.4e-61	72.4
WP_015377503.1\|2110381_2110768_+	DUF2570 family protein	NA	NA	NA	NA
WP_015377504.1\|2110799_2110937_+	hypothetical protein	NA	NA	NA	NA
WP_015377505.1\|2110923_2111154_+	hypothetical protein	NA	NA	NA	NA
WP_015377506.1\|2111401_2112094_+	DUF4145 domain-containing protein	A0A1S5S8Y9	Streptococcus_phage	1.5e-40	56.2
WP_015377507.1\|2112235_2112967_+\|terminase	terminase small subunit	NA	NA	NA	NA
WP_049811600.1\|2112978_2114214_+\|terminase	PBSX family phage terminase large subunit	A0A2H4J196	uncultured_Caudovirales_phage	1.7e-153	66.1
WP_015377509.1\|2114210_2115674_+	DUF1073 domain-containing protein	A0A2H4IYV2	uncultured_Caudovirales_phage	9.8e-188	65.3
WP_049811601.1\|2115621_2116284_+\|capsid	minor capsid protein	A0A2H4J8F5	uncultured_Caudovirales_phage	7.8e-68	60.0
WP_015377511.1\|2116287_2117511_+	DUF2213 domain-containing protein	A0A2H4J159	uncultured_Caudovirales_phage	2.5e-112	57.8
WP_015377512.1\|2117522_2118014_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	1.4e-50	63.4
WP_015377513.1\|2118028_2118973_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	7.3e-152	82.7
WP_015377514.1\|2119007_2119400_+	hypothetical protein	NA	NA	NA	NA
WP_015377515.1\|2119386_2119791_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.8e-44	67.4
WP_015377516.1\|2119787_2120351_+	hypothetical protein	A0A0M4S631	Salmonella_phage	2.5e-46	54.8
WP_015377517.1\|2120337_2120727_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	1.4e-53	81.4
WP_041922223.1\|2120701_2121265_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	3.5e-61	61.1
WP_015377519.1\|2121267_2122749_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	6.3e-134	51.3
WP_015377520.1\|2122760_2123201_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.5e-46	64.4
WP_015377521.1\|2123211_2123640_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.9e-38	59.9
WP_015377523.1\|2123818_2125825_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	2.6e-207	57.4
WP_015377524.1\|2125824_2126430_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.3e-61	68.6
WP_015377525.1\|2126426_2126732_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.7e-20	48.5
WP_015377526.1\|2126735_2127797_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.5e-142	69.3
WP_015377527.1\|2127806_2128151_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	9.8e-22	46.4
WP_015377528.1\|2128289_2128850_+	hypothetical protein	NA	NA	NA	NA
WP_041922224.1\|2128846_2129086_+	hypothetical protein	NA	NA	NA	NA
WP_041922225.1\|2129095_2129458_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_015377529.1\|2129514_2130285_+\|plate	phage baseplate assembly protein V	A0A0M5M1K7	Salmonella_phage	2.9e-82	62.4
WP_015377530.1\|2130281_2130632_+	hypothetical protein	A9YX11	Burkholderia_phage	1.6e-32	61.1
WP_015377531.1\|2130624_2131815_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	4.0e-107	54.1
WP_015377532.1\|2131811_2132390_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	5.4e-41	46.2
WP_015377533.1\|2132390_2133377_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	9.4e-17	49.5
2137341:2137363	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2289189 : 2315452

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015377659.1\|2289189_2290608_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_004931526.1\|2290755_2290965_-	hypothetical protein	NA	NA	NA	NA
WP_004931524.1\|2291122_2291275_+	hypothetical protein	NA	NA	NA	NA
WP_004931522.1\|2291743_2292136_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_015377661.1\|2292140_2292740_+	hypothetical protein	NA	NA	NA	NA
WP_004931517.1\|2292795_2293035_-	YebV family protein	NA	NA	NA	NA
WP_004931514.1\|2293170_2294103_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_193378551.1\|2294123_2296544_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_015377663.1\|2296611_2297376_-	molecular chaperone	NA	NA	NA	NA
WP_166445048.1\|2297400_2297949_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033633239.1\|2297954_2298458_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015377665.1\|2298460_2299000_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_041922228.1\|2299274_2300711_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_015377667.1\|2300813_2303444_-	PqiB family protein	NA	NA	NA	NA
WP_031300492.1\|2303412_2304660_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_015377669.1\|2304915_2305413_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|2305509_2306220_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_015377670.1\|2306239_2308288_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	3.4e-85	33.7
WP_015377671.1\|2308355_2309201_-	DMT family transporter	NA	NA	NA	NA
WP_015377672.1\|2309197_2310505_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_004931490.1\|2310497_2311295_-	hypothetical protein	NA	NA	NA	NA
WP_015377673.1\|2311282_2312068_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-10	27.6
WP_151262586.1\|2312064_2313081_-	iron ABC transporter permease	NA	NA	NA	NA
WP_015377675.1\|2313107_2314199_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004931482.1\|2314567_2315452_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

4576811 : 4615707

Erwinia_phage(39.47%)

lysis,plate,head,integrase,capsid,portal,tRNA,terminase,tail

attL 4583442:4583490|attR 4616528:4616576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015379097.1\|4576811_4577825_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-109	59.5
WP_001144069.1\|4578150_4578366_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_015379098.1\|4578502_4580251_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.7e-74	38.8
WP_004937194.1\|4580408_4582250_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_041922282.1\|4582305_4582749_-	ester cyclase	NA	NA	NA	NA
WP_015379100.1\|4582775_4583264_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4583442:4583490	attL	NA	NA	NA	NA
WP_071824297.1\|4583890_4584121_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.9e-21	64.5
WP_015379101.1\|4584218_4585367_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	7.6e-127	63.9
WP_015379102.1\|4585363_4585849_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
WP_015379103.1\|4585848_4588626_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.1e-98	39.6
WP_026142543.1\|4588618_4588741_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	3.0e-10	75.0
WP_015379104.1\|4588773_4589055_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-26	70.1
WP_015379105.1\|4589109_4589619_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	4.9e-70	75.6
WP_015379106.1\|4589634_4590804_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	9.9e-183	81.2
WP_015379107.1\|4591080_4591602_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	8.6e-38	48.0
WP_015379108.1\|4591603_4594138_-\|tail	phage tail protein	Q858V4	Yersinia_virus	1.3e-57	53.3
WP_015379109.1\|4594147_4594681_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	4.3e-77	76.6
WP_015379110.1\|4594673_4595582_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	6.2e-108	67.9
WP_015379111.1\|4595586_4595937_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	1.1e-36	66.4
WP_154231760.1\|4595933_4596074_-	hypothetical protein	NA	NA	NA	NA
WP_015379112.1\|4596084_4596714_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.5e-76	73.8
WP_015379113.1\|4596786_4597233_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.7e-40	59.9
WP_015379114.1\|4597219_4597696_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.6e-49	64.7
WP_015379115.1\|4597791_4598220_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	5.5e-14	36.6
WP_015379116.1\|4598216_4598729_-	lysozyme	A0A218M4K3	Erwinia_phage	7.4e-58	67.1
WP_015379117.1\|4598712_4598922_-	hypothetical protein	B6SD15	Bacteriophage	9.2e-07	48.2
WP_015379118.1\|4598924_4599128_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
WP_015379119.1\|4599127_4599616_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.9e-39	54.3
WP_015379120.1\|4599709_4600369_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	5.2e-80	69.4
WP_015379121.1\|4600371_4601583_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	9.7e-157	78.2
WP_015379122.1\|4601625_4602441_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	2.3e-69	53.0
WP_041922283.1\|4602583_4604356_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	4.4e-291	81.9
WP_015379124.1\|4604355_4605390_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	2.6e-163	80.4
WP_041922374.1\|4605434_4605776_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_071605322.1\|4605775_4606030_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	5.9e-16	47.6
WP_015379126.1\|4606506_4607274_-	RloB domain-containing protein	NA	NA	NA	NA
WP_015379127.1\|4607212_4608490_-	ATP-binding protein	NA	NA	NA	NA
WP_015379128.1\|4608897_4609122_-	hypothetical protein	NA	NA	NA	NA
WP_015379129.1\|4609160_4611377_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	9.8e-240	58.0
WP_015379130.1\|4611373_4611754_-	hypothetical protein	NA	NA	NA	NA
WP_015379131.1\|4611743_4612025_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
WP_015379132.1\|4612147_4612372_-	TraR/DksA C4-type zinc finger protein	Q6K1F5	Salmonella_virus	2.2e-14	58.3
WP_041922285.1\|4612371_4612665_-	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-06	54.4
WP_031221632.1\|4612729_4613032_-	hypothetical protein	NA	NA	NA	NA
WP_041922375.1\|4613043_4613223_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	3.0e-06	53.1
WP_015379133.1\|4613233_4613743_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	4.2e-45	53.6
WP_071824299.1\|4613773_4613992_-	regulator	NA	NA	NA	NA
WP_041922286.1\|4614101_4614686_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	5.3e-28	31.1
WP_041922287.1\|4614690_4615707_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.0e-123	64.0
4616528:4616576	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage