CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number
NC_020269	Staphylococcus warneri SG1 plasmid clone pvSw7 genomic sequence	0 crisprs	NA	0	0
NC_020267	Staphylococcus warneri SG1 plasmid clone pvSw5 genomic sequence	0 crisprs	NA	0	0
NC_020266	Staphylococcus warneri SG1 plasmid clone pvSw4 genomic sequence	0 crisprs	NA	0	0
NC_020164	Staphylococcus warneri SG1, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3,DinG	1	6
NC_020165	Staphylococcus warneri SG1 plasmid pSZ4, complete sequence	0 crisprs	NA	0	0
NC_020274	Staphylococcus warneri SG1 plasmid clone pvSw1 genomic sequence	0 crisprs	WYL	0	1
NC_020265	Staphylococcus warneri SG1 plasmid clone pvSw3 genomic sequence	0 crisprs	NA	0	0
NC_020268	Staphylococcus warneri SG1 plasmid clone pvSw6 genomic sequence	0 crisprs	NA	0	0
NC_020264	Staphylococcus warneri SG1 plasmid clone pvSw2 genomic sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3926 : 13130

Streptococcus_phage(66.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001106019.1\|3926_4601_-\|transposase	IS6 family transposase IS257R2	A0A0N9RU54	Staphylococcus_phage	8.1e-129	100.0
WP_015388807.1\|4616_5312_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.8e-22	34.1
WP_001086633.1\|5313_6444_+	ABC transporter permease	NA	NA	NA	NA
WP_001070743.1\|6453_7104_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000084169.1\|7164_7371_+	DUF1413 domain-containing protein	NA	NA	NA	NA
WP_000228166.1\|7473_8343_+	hypothetical protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_000662263.1\|8323_9058_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_001255866.1\|9090_9999_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	E4ZFP8	Streptococcus_phage	2.8e-177	100.0
WP_000627290.1\|9995_10538_+	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001096887.1\|10630_11425_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_001079938.1\|11700_12273_+	transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
WP_001105987.1\|12455_13130_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	6.8e-128	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_020164

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CRISPR-Cas detection and classification

Crispr_ID: NC_020164_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020164_1

544808-544894

Orphan

Consensus_repeat	Method
AAGTACTTCCATTTTAATGGTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020164_1

>merge|NC_020164|1|544808-544894|CRISPRCasFinder
AAGTACTTCCATTTTAATGGTTAGTACTTCTTACGCAGTAGTGAAAGCTACTGTGATCCTTAAAAGTACTTCCATTTTAATGGTTAG

>NC_020164|1|1|544808-544894|CRISPRCasFinder
AAGTACTTCCATTTTAATGGTTAG	TACTTCTTACGCAGTAGTGAAAGCTACTGTGATCCTTAA
AAGTACTTCCATTTTAATGGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020164.1\|WP_002465461.1\|541832_542510_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NC_020164.1\|WP_002467269.1\|550603_550948_-\|DUF4889-domain-containing-protein	unknown	unknown	gnl\|CDD\|374445
NC_020164.1\|WP_002467277.1\|551310_551733_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|226389
NC_020164.1\|WP_015364729.1\|539718_541272_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NC_020164.1\|WP_002450328.1\|547053_547500_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_020164.1\|WP_002465465.1\|534931_535858_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NC_020164.1\|WP_015364730.1\|544047_544701_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
NC_020164.1\|WP_002467268.1\|545193_546345_+\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NC_020164.1\|WP_015364733.1\|554848_555220_-\|DUF1722-domain-containing-protein	unknown	unknown	gnl\|CDD\|377982
NC_020164.1\|WP_002467273.1\|548422_548788_+\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NC_020164.1\|WP_015364726.1\|531426_532149_+\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NC_020164.1\|WP_002467272.1\|549037_550315_+\|proton/sodium-glutamate-symport-protein-GltT	unknown	unknown	gnl\|CDD\|183075
NC_020164.1\|WP_015364732.1\|551809_553912_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_020164.1\|WP_002465468.1\|542531_542984_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056
NC_020164.1\|WP_002465469.1\|532218_534624_+\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|224171
NC_020164.1\|WP_015364731.1\|546398_546815_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_020164.1\|WP_002465459.1\|529006_529543_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NC_020164.1\|WP_002465474.1\|534626_534941_+\|nitrite-reductase-(NAD(P)H)-small-subunit	unknown	unknown	gnl\|CDD\|239606
NC_020164.1\|WP_002467276.1\|547664_548294_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NC_020164.1\|WP_002465466.1\|541264_541840_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091

Protein	Function_ID	Function_description	E-value
NC_020164.1\|WP_002465461.1\|541832_542510_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	2.02622e-111
NC_020164.1\|WP_002467269.1\|550603_550948_-\|DUF4889-domain-containing-protein	gnl\|CDD\|374445	pfam16230, DUF4889, Domain of unknown function (DUF4889). This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.	3.95214e-24
NC_020164.1\|WP_002467277.1\|551310_551733_-\|general-stress-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	3.62764e-44
NC_020164.1\|WP_015364729.1\|539718_541272_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NC_020164.1\|WP_002450328.1\|547053_547500_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.30635e-17
NC_020164.1\|WP_002465465.1\|534931_535858_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	1.36101e-107
NC_020164.1\|WP_015364730.1\|544047_544701_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.24849e-78
NC_020164.1\|WP_002467268.1\|545193_546345_+\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	2.58924e-113
NC_020164.1\|WP_015364733.1\|554848_555220_-\|DUF1722-domain-containing-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.09318e-21
NC_020164.1\|WP_002467273.1\|548422_548788_+\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	1.20166e-10
NC_020164.1\|WP_015364726.1\|531426_532149_+\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	3.15949e-35
NC_020164.1\|WP_002467272.1\|549037_550315_+\|proton/sodium-glutamate-symport-protein-GltT	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	4.56813e-168
NC_020164.1\|WP_015364732.1\|551809_553912_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.88912e-20
NC_020164.1\|WP_002465468.1\|542531_542984_+\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	1.14511e-05
NC_020164.1\|WP_002465469.1\|532218_534624_+\|nitrite-reductase-large-subunit	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NC_020164.1\|WP_015364731.1\|546398_546815_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.34688e-25
NC_020164.1\|WP_002465459.1\|529006_529543_+\|N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.53237e-07
NC_020164.1\|WP_002465474.1\|534626_534941_+\|nitrite-reductase-(NAD(P)H)-small-subunit	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.88053e-53
NC_020164.1\|WP_002467276.1\|547664_548294_+\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.50759e-56
NC_020164.1\|WP_002465466.1\|541264_541840_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	9.15113e-50

>NC_020164.1|WP_015364730.1|544047_544701_+|DNA-binding-response-regulator
MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVMEFKPDVLLMDLSMPPGESGLIATSKIHESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYNGETYVDMKLTTSLVNEFVNSSNQEYTDTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKLLEF
>NC_020164.1|WP_002465468.1|542531_542984_+|GAF-domain-containing-protein
MMPDSMFESQNFQENIDRIRLEQGFDFAALAFYESASTFSPIKWQYVSGNKNDRYKLIILRKGRGLAGNVMKTGKRMVIANVDMALTPDEKVKFPILLSENLTAVIAIPLWYQQQVYGVMLFGQRNHKPLPINVYDIDIYEQLGIFNEEI
>NC_020164.1|WP_002465461.1|541832_542510_+|respiratory-nitrate-reductase-subunit-gamma
MINQFLWVIYPYLCIAIFIIGHIARFKYDQFSWTAKSSELIEKKRLKWGSLLFHLGVIPVFFGHVVGLVIPKYWMDSLGVSEHMYHFGAVYIGSIFGIMTLIGMLLLTARRITIKNVRRLSSFSDIFVNILLLIIIFMGCYSTIVTNMMHIEFNYRETISVWFRQLFMFKPHADLMTNVPLQFKLHMLLGFTIFACWPFTRLVHVWSVPLSYTNRRYIIYRKNKL
>NC_020164.1|WP_002465466.1|541264_541840_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MINFDNLYRYQDSLGYIAMQLCFPEKKTFNENIFNEVIDPSHPGYQDLLAFREQMMQYTLSEIQQIYTDTFDFSKKAPLYMTYNQFDTQKERGQMLAKLKVLYEMFGLKMVDNELSDYLPLMLQFLQTIEWRGDERAEENIQLVIMIIEDGTYVMANELGKLNHPYGYVIQALRKTLKLCLQVPEGVALHD
>NC_020164.1|WP_015364729.1|539718_541272_+|nitrate-reductase-subunit-beta
MKIKAQIAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGTGYPKRWEDQEHYKGGWVLNRKGKLQLKSGSKWSKIALGKIFYNPDMPLIQDYYEPWNYNYEHLTTAKAGQHSPVARAYSVISGENMDIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVEEMASTENEKELYEKQLELFLDPFDEAIIAQAEKDGINHEWIEAAQQSPIYKLAIEYKLAFPLHPEYRTMPMVWYCPPLSPIMSYFEGKNSEQNPDMIFPAIEEMRLPIEYLANMFTAGATKPVKQALQKMAMMRSYMRAQVTQKDFDVERLTQLGLTERQTKDMYRLLGLAKYEERFVIPTTHKETYLDTYHAQGSQGYGGENFGVNCEGCGVAVATDKSGQDIYNERFYGGIFRD
>NC_020164.1|WP_002465465.1|534931_535858_+|uroporphyrinogen-III-C-methyltransferase
MPLNRYGTVYLVGAGPGDPNLLTKRAQRLIENADIILYDRLVNPFILQYAKPDIEIIDVGKKPYTKHIQQEAINQKMIEAASKHHHVVRLKGGDPAIFGRVQEEVEALVELNINFEIVPGITSASAAAQSMNLGLTMRSIAKNVTFSTGHFKDSKDNDIDISTLINKGTLAVYMGVKRLPRIISQIRQYTSYDYPIAIVFRASLFDEQVLTGNISNIEQKLNQYKVEGLPGICIIGDIISYSQPQIKTKNKEKIYIVKGDRNQALEKCELLYEQGYGCMIEVDETYHYSQQALYKSVLKQYTHQFIEL
>NC_020164.1|WP_002465474.1|534626_534941_+|nitrite-reductase-(NAD(P)H)-small-subunit
MKHMEKIKVSRIDELTPLIGKKVFVNDKEIGLFLTNEGEIFAVNNICPHKEGPLSEGTVSGNYVYCPLHDQKIDLKTGDVQEPDTGCVETYPVEVVDGDIFICL
>NC_020164.1|WP_002465469.1|532218_534624_+|nitrite-reductase-large-subunit
MTKNKLVMIGNGMAGLRTIEEILDRDPQRFEITIIGKEAYPNYNRIMLSNILQNKMTVEETIMNSYDWYAEHDIKLVNNDPVTILDREKKTVLTESGQSFEYDQCIIATGSKAFVLPIPGSDLPSVIGWRTIDDTKRMMEIAQTKHKAIVIGGGLLGLECARGLLDQGMEVTVVHLAEWLMEMQLDRKAGQMLKNDLEQQGMRFELQANTQEILGHEDVESVRLADGRVLEADLVVMAVGIRPYTEVAKAAGLDVNRGIIVNEFMQTNDPNIFAVGECAECEGKVYGLVAPLYEQGIVLADYLTNKETNGYHGSTTFTSLKVSGCDLYSAGIIEETDDIHGIEIFNSIDNNYKKVFLKDGEVVGAVLYGNTDDGSRFYNMMKKHESIEDYTLVSLLTKGGEAANVSIEDMADDETICGCNGVNKGTIVEAITKNGLTSVAEVTKMTKAGNSCGKCKGQIADILQYALGDDFIASKPTGICACTDLSRDQIVTQIRAKGLKTSKEVRHVLNFKDKNGCPKCRPAINYYLNMIYPYEHKDEKESRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYNVPLVKVTGSQRVGLYGLKKEELPSVWEDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTQLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGVKDFGVISVENGFQLYIGGNGGTEVTKGQLLTTVETEDEVIRICGALMQYYRETGIYAERTAPWLERLGFENVKEVLLDPERQQALFDRVMEAKQAIQEEPWQAIVNDKASQKIFEVERV
>NC_020164.1|WP_015364726.1|531426_532149_+|sirohydrochlorin-chelatase
MVGNILVAHGMRKGNQNKALEEFITTLLKEEEYHYELAFLESDTQSLEITMEKMIEKGITQFRIVPLLIFRAMHYIGDIPNILSEMKVKYPQISSQMSEPLGTHPYMKSLVERRIEDVHLADQASKTATVIIAHGNGSGRFTKAHDELKAFVETIDSKRPVYARALYGVLTFRNDLDEISKQYDELIIVPLFLFDGRLVNKVKRFIDDMDIHCKLHITPSINFDDALRLIIRERLEALQF
>NC_020164.1|WP_002465459.1|529006_529543_+|N-acetyltransferase
MSNVNIRIADQNDVVPIHQLMYEAFTPLRELGIDWPSVNATEEMVADNIKHNTTFVLELNDTIISTITVRYPWGSVRSISGYPFVWWFATQPEFDGQGYGSQLLKYVEEDFLRDTLKASAVTLGTSARLHPWLLSIYEKRGYEIYAEHENDDGDLGVIMRKILIPERFEEKILGQPPF
>NC_020164.1|WP_002467268.1|545193_546345_+|NarK/NasA-family-nitrate-transporter
MDKTKGGFQLTLQTLSLVVGFMAWSIISPLMPFISQDIKISAGQLSIILAIPVILGSILRVPFGYLTNIVGAKWVFFCSFIVLLFPIYFLGQAQSPKMMMISGFFLGVGGAIFSVGVTSIPKYFPKDKVGLANGIYGMGNIGTAISSFLAPPIAGIIGWQATVRSYLVIIAIFAVLMFIFGDNREPKVKVPLIAQMKILFKNYKLYYTSLWYFITFGAFVAFGLFLPNYLVQHFGIDKVDAGIRSGIFIALATFLRPVGGILGDKLNAVKVLMVDFVIMIIGALILGFSNHIALFTIGCLMISVCAGIGNGLIFKLVPSYFAKEAGSANGIVSMMGGLGGFFPPLVITYVTGMTGSSHLAFIFLAVFGLIALITMVHLNKKEA
>NC_020164.1|WP_015364731.1|546398_546815_-|Hsp20/alpha-crystallin-family-protein
MPSNDFFNNSFLKNDPTDMFRDLGKQVFNQFSTQAFPANLYNESDHYLIEAELAGVKKENISLTFDHHTLTIKANKYLEPHNGQAQLNERSNGELVRRFELEDVDKDLIKATFEDGVLNIRLPKQQQESEDATTISIL
>NC_020164.1|WP_002450328.1|547053_547500_-|MarR-family-transcriptional-regulator
MYVENSYLSKQLCFLFYVSSKEIIKKYSSYLKEYELTYTGYIVLMAIEEDEKLNIKTLGDRVFLDSGTLTPLLKKLEKKNYVVRTREEKDERNLQISLTDHGKSIKKPLSEVSLKVFGEFDIDVNEAKELINHLQMFVSKNFDKSTEK
>NC_020164.1|WP_002467276.1|547664_548294_+|nitroreductase-family-protein
MERISKFDDVLKGRKSVKVFDTEYKISHEEMDEMIQKATKAPSSVNMQPWRIMVVDSDEGKEKILPSFGMNSRQVNTSSAMIIVFGDLKNYEKAEQIYSDAVSKKHMTEEIKDKMLSWVLPHYKGLSREGMKDIVNIDSSLMAMQFMLVAKSHGYDTNPIGGFDKANIADVLGLDSERFVPVVAIAVGKGAQEAHDSVRLPLEDVRQYL
>NC_020164.1|WP_002467273.1|548422_548788_+|DUF3139-domain-containing-protein
MSRKQKLIRIAIILIISLVLAFAFFFALKTYQGHKNIEMVDSYLKEHHLKDKIKKEETLYSAKKGVYYKEVIYKDEPKVTYVIQPISTRKGIFAEGFDTETKKSLKSAKHNYFNKNYKPSN
>NC_020164.1|WP_002467272.1|549037_550315_+|proton/sodium-glutamate-symport-protein-GltT
MALFKRKISLPVQVLIALVLGVVVGLILYGNEEAANYIKPFGDVFLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEIITTIAIGLGIIFGNLFKPGSGLDPSKLPKGDISKYQSSAHAAEQSTYGNHFIDTIVNIVPTNFFEALTKGELLPIIFFAVFFGLGLAAIGEKAEPVKSFLNGTLEAVFWMINKILKLAPLGVFAFICTTIITFGASALLPLLKLVLVVVFAMVFFVVVVLGIVARMCGISIFSIMKILKSEILLAFSTSSSEAVLPVMMKKMEKFGSPKEITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLTLTEQIVLMLTLMLTSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRLLDMVRTVVNVMGNALSTVVIAKWENLYDKKQGQEYLKSL
>NC_020164.1|WP_002467269.1|550603_550948_-|DUF4889-domain-containing-protein
MKSKKGLGFGLIAIMLIVCIVLVVVMMAGGKKETYYGVMKNDTTIDKMISEKDEKIEKNVKLPSDAKVSVKKEDFVMITKNEKTGKIAKVKKVDHDDVPHGLMTQIHDMGHMHM
>NC_020164.1|WP_002467277.1|551310_551733_-|general-stress-protein
MDNQKATEAIEKVLDHSKVGVLSTAYNNKPNSRYMVFYNDELTLYTKTNVNSIKVEEIEDNPYAYILLGYNETTNHSFVEIDATIEVVKDQKVIDWLWETQDKSFFDSNKDPELCVLKVTPKSIKLMNDKDLDTPFTIEL
>NC_020164.1|WP_015364732.1|551809_553912_-|AraC-family-transcriptional-regulator
MSCHLTLSTQHQTQPCRNINQIIILFSLSHELSIKINGERKDLDAHIAIINHGDIYEIENATHLVQLSIPIFYFYIEDTSFFQCYFDRHLLQSSDYIKTLLLQLLQQDSKNNIDQQVCPKIIQTLYKEAVVKLEDDYIPNMAVNYPLFANCLQFLEEHLSQPISLKDVATHSSISESYCSNVFNRYLNMNFKDYFTSLKLCHSIQLLMTSHLSINAISEISGFTSHTNFTNQFKNYLQFSPKQYRTYINQIDTMPQLNIGDYDHAAFLPLIEKFNFNDQLTTEITKIDIEHFDPKDHSKASKAFIRLDNFNELFHFTFNDYFDIDFSFLPEPVILINDIKDLTTNQINYHLLYRCFDKLFERHIGLAMTIKSKVDFKAVNQFILTFLQGHTDYQLNKKTVKLMLIFDSATMTIHDIHLCHLKIKNKNRDIKYGVTIDGLLHQHQTLDKTYDILRRLHFDYYLLDIENIETTSLLINKSKTYNRTTSHFDNYKQFIIDSGIESTRFVYDYLSLKCFKYTNNGVNPLQLADLVCHIIALLRYGGGISYQLIATGSIYISLFNEFGNALPLIHIYKMAHAFVDEPIQISNNYIMSRKDGNYHFILFNKINDRYLSDTHLEFILKNNLKANSLITVQTLNNEHGTIDNLLPQNRQQLFLDKEMIEQLDRSNHPKTELSLLELDNQDIKIILKHDEVKYICIKPN
>NC_020164.1|WP_015364733.1|554848_555220_-|DUF1722-domain-containing-protein
MKERGRIEQLWREEKYRVLLHSQKQYDAIREKLKTQTSYEEIRMMIEHAITIDPSQGSVINAYDHMWGYFKKLATDEEKQKSQTLKQQFVNHEVSIHDLMSFLNVLANKYEVHYIQQSTVLKE

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Crispr_ID: NC_020164_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020164_2

2240505-2240597

Orphan

Consensus_repeat	Method
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020164_2

>merge|NC_020164|2|2240505-2240597|CRISPRCasFinder
TGCATTTTAATGCTTAGAGTTTCTTATGCATGAGCTATGCTCAGGCACTCCTTAATCTAATGCATTTTAATGCTTAGAGTTTCTTATGCATGA

>NC_020164|2|2|2240505-2240597|CRISPRCasFinder
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA	GCTATGCTCAGGCACTCCTTAATCTAA
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020164.1\|WP_002451223.1\|2229611_2230082_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NC_020164.1\|WP_002465553.1\|2238593_2239202_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NC_020164.1\|WP_002451212.1\|2242869_2243052_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NC_020164.1\|WP_015365356.1\|2244023_2244551_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|226213
NC_020164.1\|WP_002451216.1\|2239769_2240270_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NC_020164.1\|WP_002465568.1\|2227410_2229492_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NC_020164.1\|WP_002451213.1\|2242310_2242859_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NC_020164.1\|WP_002465583.1\|2244550_2245297_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NC_020164.1\|WP_002451221.1\|2230656_2230917_-\|50S-ribosomal-protein-L7ae-like-protein	unknown	unknown	gnl\|CDD\|184172
NC_020164.1\|WP_002451217.1\|2239361_2239730_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NC_020164.1\|WP_002451215.1\|2240795_2241491_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NC_020164.1\|WP_037540614.1\|2245301_2245691_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|224850
NC_020164.1\|WP_015365355.1\|2243371_2243953_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_020164.1\|WP_015365353.1\|2234824_2238376_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NC_020164.1\|WP_002465572.1\|2231065_2234689_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NC_020164.1\|WP_015365358.1\|2245692_2247093_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_020164.1\|WP_002465546.1\|2243103_2243247_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NC_020164.1\|WP_002451225.1\|2225994_2227179_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NC_020164.1\|WP_002451222.1\|2230153_2230567_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NC_020164.1\|WP_002451214.1\|2241707_2242130_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661

Protein	Function_ID	Function_description	E-value
NC_020164.1\|WP_002451223.1\|2229611_2230082_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.88667e-112
NC_020164.1\|WP_002465553.1\|2238593_2239202_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	6.13886e-78
NC_020164.1\|WP_002451212.1\|2242869_2243052_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	1.16587e-12
NC_020164.1\|WP_015365356.1\|2244023_2244551_-\|NYN-domain-containing-protein	gnl\|CDD\|226213	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only].	8.66026e-80
NC_020164.1\|WP_002451216.1\|2239769_2240270_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	9.07084e-72
NC_020164.1\|WP_002465568.1\|2227410_2229492_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NC_020164.1\|WP_002451213.1\|2242310_2242859_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.09504e-86
NC_020164.1\|WP_002465583.1\|2244550_2245297_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	8.69202e-88
NC_020164.1\|WP_002451221.1\|2230656_2230917_-\|50S-ribosomal-protein-L7ae-like-protein	gnl\|CDD\|184172	PRK13600, PRK13600, putative ribosomal protein L7Ae-like; Provisional.	1.88201e-44
NC_020164.1\|WP_002451217.1\|2239361_2239730_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	4.12734e-48
NC_020164.1\|WP_002451215.1\|2240795_2241491_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.1535e-150
NC_020164.1\|WP_037540614.1\|2245301_2245691_-\|ribonuclease-III	gnl\|CDD\|224850	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and repair].	1.10319e-56
NC_020164.1\|WP_015365355.1\|2243371_2243953_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	9.00983e-21
NC_020164.1\|WP_015365353.1\|2234824_2238376_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NC_020164.1\|WP_002465572.1\|2231065_2234689_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NC_020164.1\|WP_015365358.1\|2245692_2247093_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_020164.1\|WP_002465546.1\|2243103_2243247_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	1.84723e-13
NC_020164.1\|WP_002451225.1\|2225994_2227179_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NC_020164.1\|WP_002451222.1\|2230153_2230567_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	7.89944e-85
NC_020164.1\|WP_002451214.1\|2241707_2242130_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	1.17994e-97

>NC_020164.1|WP_002451216.1|2239769_2240270_-|50S-ribosomal-protein-L10
MSAIIEAKKQLVDTIADQLKNSVSTVIVDYRGLTVAEVTELRKQLREAGVEYKVYKNTMVRRAAEKAGIEGLDEFLTGPTAIATSTEDVVAPAKVIAGFAKEHEALEVKSGVMEGNVISAEEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAVGEQKEESAE
>NC_020164.1|WP_002451217.1|2239361_2239730_-|50S-ribosomal-protein-L7/L12
MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAAGGGEAAAEKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPKVIKEAMPKEDAEKLKEQLEEVGATVELK
>NC_020164.1|WP_002465553.1|2238593_2239202_-|class-I-SAM-dependent-methyltransferase
MSHYYDENPEVKSDEKQITYECYQHSINLITDNGVFSRDKVDFGSDLLIQTFLKANPPGPSKTIADVGCGYGPIGLMIAKVSPHHHITMLDVNRRALELAKKNKKKNHIENADIFESDGMTQVDNNQFDFVLTNPPIRAGKTVVHRIFEEAYQKLKSNGELFVVIQKKQGMPSAKKKMDELFNNVEVVNKSKGYYILKSVKA
>NC_020164.1|WP_015365353.1|2234824_2238376_-|DNA-directed-RNA-polymerase-subunit-beta
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRENYDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDSEYLRNMLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETGEIVVEEGTVLDRRKLDEIMDVLEANANSEVFELEGTVIDEPVEIQSIKVYVPNDDEGRTTTVIGNALPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTNAITDQIDYLTADEEDSYVVAQANSRLDENGRFIDDEVVCRFRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITANHRGRVEHVESNEILVRRLVEQDGQEYEGELDRYPLAKFKRSNSGTCYNQRPIVAAGDIVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQDNEIEMADIEDEDVTERKVDLQQKDAPESQKETTD
>NC_020164.1|WP_002465572.1|2231065_2234689_-|DNA-directed-RNA-polymerase-subunit-beta'
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIRDLLSEIDLDEELKILRDELESATGQRLTRAIKRLEVVESFRNSGNDPAWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIVEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERTDAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVHASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQTNLEGTTPDKYFVDPTELGEGGLKEFFETKELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVVLPDKKDILDEHEKLVERVTKQFNRGLITEEERYNAVVEIWTDAKDQIQGELMQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEGRYSKETIRHPETDEVIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRHGVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGENETRSYLASGTSRLKVEVGQSVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVQYDKNVAPVASSEEEVEVTE
>NC_020164.1|WP_002451221.1|2230656_2230917_-|50S-ribosomal-protein-L7ae-like-protein
MSNEKVARFNKQQYVVGLKETLKALNKDQVTSLIIARDVEVHLMTRVLSQINQKNIPYTLFSSKKELGEYVGINVNATIVAILNEN
>NC_020164.1|WP_002451222.1|2230153_2230567_-|30S-ribosomal-protein-S12
MPTINQLVRKPRQSKSKKSDSPALNRGFNSKKKQFTELNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN
>NC_020164.1|WP_002451223.1|2229611_2230082_-|30S-ribosomal-protein-S7
MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEERSGRQAIEVFEEAIENIMPVLEVKARRVGGSNYQVPVEVRPERRSTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW
>NC_020164.1|WP_002465568.1|2227410_2229492_-|elongation-factor-G
MAREFSLKNTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWDGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFINKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIDEIEIPEDHKERAEEARSTLIEAVAETNDELMEKYLGDEEISVEELKNAIRQATTDVEFYPVLCGTAFKNKGVQLMLNAVIDYLPSPLDVKPIVGHRANDPEEEVIAKPDDSAEFAALAFKVMTDPYVGKLTFFRVYSGTLSSGSYVKNSSKDKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKETGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKQSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGGGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLFDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTARRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSISEEIIKKNKGE
>NC_020164.1|WP_002451225.1|2225994_2227179_-|elongation-factor-Tu
MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERGITINTAHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDEKYEEKILELMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVQLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIHE
>NC_020164.1|WP_002451215.1|2240795_2241491_-|50S-ribosomal-protein-L1
MAKKGKKYQEAANKVDRTQYYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIRGAVVLPNGTGKSQRVLVFAKGDKITEAEEAGADYVGESDYVQKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFSDEKLVENFKALQDVLAKAKPSSSKGTYFKSVAVTTTMGPGVKVDTASFKL
>NC_020164.1|WP_002451214.1|2241707_2242130_-|50S-ribosomal-protein-L11
MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKNKVASVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGITVE
>NC_020164.1|WP_002451213.1|2242310_2242859_-|transcription-termination/antitermination-protein-NusG
MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGLKEKTIDVELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL
>NC_020164.1|WP_002451212.1|2242869_2243052_-|preprotein-translocase-subunit-SecE
MAKKESFFQGVKSEMEKTSWPTKEELFKYTVIVVSTVIFFLVFFYALDLGITALKNLLIG
>NC_020164.1|WP_002465546.1|2243103_2243247_-|50S-ribosomal-protein-L33
MKKVPLNCEECGNRNYHVPKKEGSAVRLTLKKYCSRCNAHTVHKESK
>NC_020164.1|WP_015365355.1|2243371_2243953_-|sigma-70-family-RNA-polymerase-sigma-factor
MTHKNNNLKQQLLLSKSQQLDIELKAILQQFNSFIMRRINYISQNDFEKDDLYQEVLIKIYLALERHHFQYDDSFIKYISRLIKSVKCDYYRRHYTQKKRYTNVVNDAVVEYQTNLLNRDRVEREILTCEAIKLLNTACEKLTKQEREVFEFYSKGYKPKEIAHLLGIKDKVVYNAIQRCKMKIRHHLEYKLK
>NC_020164.1|WP_015365356.1|2244023_2244551_-|NYN-domain-containing-protein
MKERYLIIDGYNMIGQSPTLSKIAKENLEEAREQLIDAIANYNAVIADEIVCVFDAYEQSGIEREYMYHSVKTVFTKEKETADSFIERYVYELYDKHTTHITVVTSDMSEQHAIFGSGAYRVSSREMWRDLRENQITVSKSLEDITETKPRTRIPLSEDILAEFEKIRRGNHKKD
>NC_020164.1|WP_002465583.1|2244550_2245297_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MEDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFLSTAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGDK
>NC_020164.1|WP_037540614.1|2245301_2245691_-|ribonuclease-III
MNIKLLNPLTLAYMGDAVLDQHVRKYIVLKLRSKPNRLHQMSKLYVSAKSQAQTLETLIEEPWFTEEEMDILKRGRNAKSYTKAKNTDVQTYRKSSALESVIGFLYLEHREERLKVLLDKIIEIVNERS
>NC_020164.1|WP_015365358.1|2245692_2247093_-|cysteine--tRNA-ligase
MITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYEVIYVSNFTDVDDKLIKRSKELNESVPEIADKYIKAFYEDVGALNVKKATSNPRVMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDDLKVGARIEAGDQKEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQSEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEIDPDVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQIDQILENFEAVMDDDFNTANAVTAWYDLAKLANRYVLENVTSSKVIAKFKEVYQIFSDVLGVPLKGNQQDDLLDEEIEQLIEERNEARKNKDFARADEIRDHLKEQNIILEDTPQGVRFKRG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_020164_1	1.1\|544832\|39\|NC_020164\|CRISPRCasFinder	544832-544870	39	NC_020164.1	550470-550508	2	0.949

1. spacer 1.1|544832|39|NC_020164|CRISPRCasFinder matches to position: 550470-550508, mismatch: 2, identity: 0.949

tacttcttacgcagtagtgaaagctactgtgatccttaa	CRISPR spacer
tacttcttacgcagtagcgcaagctactgtgatccttaa	Protospacer
*****************.* *******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1014235 : 1050697

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002466826.1\|1014235_1015645_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.9e-172	63.0
WP_002466818.1\|1015634_1016648_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.4e-102	55.9
WP_002452125.1\|1016631_1016871_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	8.8e-38	90.1
WP_002466823.1\|1016931_1017405_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	8.1e-51	62.4
WP_002466801.1\|1017391_1018165_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	4.0e-108	76.5
WP_071561341.1\|1018317_1018404_+	hypothetical protein	NA	NA	NA	NA
WP_002466245.1\|1018640_1020233_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.7e-290	90.4
WP_015364877.1\|1020610_1021810_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.3e-195	87.1
WP_002466230.1\|1021929_1022838_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.3e-109	80.2
WP_002466227.1\|1022990_1023827_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-106	68.8
WP_002466240.1\|1023886_1024246_-	CrcB family protein	NA	NA	NA	NA
WP_002466225.1\|1024242_1024605_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.4e-33	65.0
WP_002466223.1\|1024744_1025050_-	hypothetical protein	NA	NA	NA	NA
WP_015364878.1\|1025305_1026019_+	transaldolase	E3SM94	Prochlorococcus_phage	6.5e-20	34.5
WP_002466233.1\|1026220_1026676_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	8.1e-24	59.2
WP_002466246.1\|1026650_1027097_-	competence protein ComK	NA	NA	NA	NA
WP_015364879.1\|1027101_1027590_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.3e-34	52.0
WP_015364880.1\|1027782_1028007_+	hypothetical protein	NA	NA	NA	NA
WP_015364881.1\|1028269_1029124_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNR1	Staphylococcus_phage	1.3e-38	42.3
WP_002466241.1\|1029446_1030946_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	4.7e-20	82.5
WP_002466226.1\|1031437_1032481_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-137	66.8
WP_002466238.1\|1032487_1033120_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.8e-83	73.8
WP_015364882.1\|1033134_1034316_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.3e-178	77.4
WP_002466232.1\|1034328_1034787_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-61	86.7
WP_002466244.1\|1035058_1036060_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	7.7e-144	78.4
WP_002466222.1\|1036292_1037120_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015364883.1\|1037523_1037925_+	transcriptional regulator	NA	NA	NA	NA
WP_002466231.1\|1037978_1038542_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	7.6e-72	70.3
WP_002452150.1\|1038538_1039492_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.0e-68	84.0
WP_002466235.1\|1039598_1040789_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.6e-175	78.8
WP_015364884.1\|1041072_1043487_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.3
WP_002466229.1\|1043510_1043822_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.1e-32	65.0
WP_015364885.1\|1044127_1050697_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	2.5e-126	49.0

DBSCAN-SWA_2

1174948 : 1183972

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002467511.1\|1174948_1175953_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.0e-06	30.8
WP_015364934.1\|1175954_1176980_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002451802.1\|1177001_1178141_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-85	46.1
WP_002451803.1\|1178156_1178417_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.3e-06	42.6
WP_015364935.1\|1178755_1181035_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	34.1
WP_015364936.1\|1181156_1183439_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	9.6e-65	29.4
WP_002467522.1\|1183453_1183972_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.3e-29	45.8

DBSCAN-SWA_3

1646661 : 1715486

Staphylococcus_phage(61.67%)

protease,tRNA,tail,capsid,integrase,terminase,head,portal

attL 1669093:1669114|attR 1715548:1715569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015365100.1\|1646661_1649412_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	3.1e-86	26.8
WP_002465492.1\|1649639_1650293_-	DivIVA domain-containing protein	NA	NA	NA	NA
WP_037539754.1\|1650316_1651087_-	S4 RNA-binding protein	NA	NA	NA	NA
WP_002450621.1\|1651226_1651520_-	YggT family protein	NA	NA	NA	NA
WP_019235873.1\|1651531_1652116_-	cell division protein SepF	NA	NA	NA	NA
WP_002465498.1\|1652127_1652799_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002465496.1\|1652798_1653602_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_002465489.1\|1653840_1655016_-	cell division protein FtsZ	NA	NA	NA	NA
WP_002465486.1\|1655048_1656446_-	cell division protein FtsA	NA	NA	NA	NA
WP_002465495.1\|1656549_1657947_-	cell division protein FtsQ	NA	NA	NA	NA
WP_002465497.1\|1657963_1659313_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002450629.1\|1659314_1660280_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_015365102.1\|1660464_1662705_-	PASTA domain-containing protein	NA	NA	NA	NA
WP_002450631.1\|1662685_1663087_-	cell division protein FtsL	NA	NA	NA	NA
WP_002450632.1\|1663100_1664036_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002450633.1\|1664051_1664483_-	transcriptional regulator MraZ	NA	NA	NA	NA
WP_002465501.1\|1664626_1666240_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
WP_015365103.1\|1666456_1666897_+	hypothetical protein	NA	NA	NA	NA
WP_002466011.1\|1667011_1667698_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_002466004.1\|1667813_1667948_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_015365104.1\|1668000_1668135_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_015365104.1\|1668187_1668322_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_002450638.1\|1668365_1668500_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_002450639.1\|1668535_1668670_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
1669093:1669114	attL	NA	NA	NA	NA
WP_015365105.1\|1669426_1670635_-	Fic family protein	Q9AZ49	Lactococcus_phage	1.0e-33	28.9
WP_015365106.1\|1671613_1673026_-	CHAP domain-containing protein	A0A2H4J1Y5	uncultured_Caudovirales_phage	5.6e-281	97.4
WP_015365107.1\|1673037_1673289_-	hypothetical protein	A0A1W6JPX4	Staphylococcus_phage	3.4e-40	98.8
WP_015365108.1\|1673328_1673880_-	hypothetical protein	A0A1W6JPW1	Staphylococcus_phage	2.6e-101	100.0
WP_015365109.1\|1673879_1674377_-	hypothetical protein	A0A2H4J3H3	uncultured_Caudovirales_phage	1.3e-88	97.0
WP_015365110.1\|1674422_1674836_-	hypothetical protein	U3PG18	Staphylococcus_phage	3.6e-39	54.0
WP_015365111.1\|1674845_1675169_-	hypothetical protein	A0A2H4J862	uncultured_Caudovirales_phage	1.9e-06	31.8
WP_015365112.1\|1675209_1675350_-	XkdX family protein	NA	NA	NA	NA
WP_015365113.1\|1675333_1675690_-	hypothetical protein	A0A060AFE4	Staphylococcus_phage	2.4e-23	42.0
WP_015365114.1\|1675703_1677452_-	DUF2479 domain-containing protein	W5RV89	Staphylococcus_phage	5.7e-126	58.5
WP_015365115.1\|1677451_1680136_-	hypothetical protein	A0A060AKF8	Staphylococcus_phage	4.6e-284	63.6
WP_015365116.1\|1680147_1680588_-	hypothetical protein	Q4ZCD3	Staphylococcus_virus	7.1e-17	41.5
WP_015365117.1\|1680580_1682173_-	hypothetical protein	A0A2H4J2R7	uncultured_Caudovirales_phage	2.6e-202	64.7
WP_015365118.1\|1682182_1683019_-\|tail	phage tail family protein	A0A2H4J7E0	uncultured_Caudovirales_phage	2.3e-80	54.9
WP_015365119.1\|1683021_1689348_-\|tail	phage tail tape measure protein	A0A0K1LKC4	Staphylococcus_phage	0.0e+00	53.2
WP_015365121.1\|1689561_1689912_-	hypothetical protein	A0A0K1LKJ0	Staphylococcus_phage	4.9e-29	59.5
WP_015365122.1\|1689952_1690183_-	fibronectin type III domain-containing protein	A0A220BYP1	Staphylococcus_phage	9.8e-10	56.9
WP_015365123.1\|1690196_1690862_-\|tail	phage major tail protein	A0A2I6PE59	Staphylococcus_phage	5.4e-85	76.6
WP_015365124.1\|1690900_1691296_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	6.5e-46	69.5
WP_015365125.1\|1691292_1691700_-	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	3.8e-41	61.8
WP_015365126.1\|1691690_1692029_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	1.0e-39	68.8
WP_015365127.1\|1692037_1692316_-\|head,tail	phage gp6-like head-tail connector protein	R4WAL3	Staphylococcus_phage	2.1e-35	77.2
WP_015365128.1\|1692384_1693551_-\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	3.5e-196	91.1
WP_015365129.1\|1693564_1694338_-\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	2.0e-115	82.1
WP_037540523.1\|1694288_1695551_-\|portal	phage portal protein	Q4ZD19	Staphylococcus_virus	3.2e-211	87.5
WP_015365131.1\|1695564_1697256_-\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	93.4
WP_015365132.1\|1697245_1697551_-\|terminase	phage terminase small subunit	A0A2I6PEQ6	Staphylococcus_phage	1.3e-41	85.1
WP_015365133.1\|1697675_1697990_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.6e-45	80.8
WP_015365134.1\|1698119_1698566_-	hypothetical protein	A0A2H4JC45	uncultured_Caudovirales_phage	4.3e-70	87.2
WP_015365135.1\|1698576_1698819_-	XRE family transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	1.7e-20	77.9
WP_037540516.1\|1698957_1699137_-	hypothetical protein	A0A1W6JPS6	Staphylococcus_phage	2.1e-12	67.8
WP_015365136.1\|1699197_1699419_+	hypothetical protein	NA	NA	NA	NA
WP_015365137.1\|1699440_1699584_-	DUF1381 domain-containing protein	M1T303	Staphylococcus_phage	4.2e-11	71.7
WP_015365138.1\|1699583_1699853_-	hypothetical protein	A0A1W6JNJ2	Staphylococcus_phage	4.8e-40	88.6
WP_015365139.1\|1699867_1700068_-	hypothetical protein	A0A0D3MVJ6	Staphylococcus_phage	4.2e-25	86.2
WP_015365140.1\|1700104_1700608_-	phage protein	A0A2H4JCG3	uncultured_Caudovirales_phage	1.4e-80	89.8
WP_015365142.1\|1700764_1701145_-	hypothetical protein	A0A2H4J5T5	uncultured_Caudovirales_phage	5.4e-05	64.1
WP_015365143.1\|1701146_1701542_-	hypothetical protein	A0A1X9I9D5	Staphylococcus_phage	2.2e-17	40.0
WP_015365144.1\|1701553_1701790_-	PVL orf 51-like protein	A0A1W6JPP2	Staphylococcus_phage	5.3e-35	89.7
WP_015365145.1\|1701779_1702142_-	phage protein	A0A1W6JPT5	Staphylococcus_phage	3.7e-64	99.2
WP_015365146.1\|1702138_1702339_-	hypothetical protein	A0A2H4J620	uncultured_Caudovirales_phage	1.2e-27	93.9
WP_015365147.1\|1702328_1702583_-	DUF3310 domain-containing protein	A0A2H4J205	uncultured_Caudovirales_phage	4.5e-40	95.2
WP_015365148.1\|1702589_1702772_-	hypothetical protein	A0A1W6JPR6	Staphylococcus_phage	2.8e-28	98.3
WP_015365149.1\|1702776_1703034_-	hypothetical protein	NA	NA	NA	NA
WP_015365150.1\|1703030_1703570_-	hypothetical protein	NA	NA	NA	NA
WP_015365151.1\|1703570_1703762_-	hypothetical protein	A0A2H4J834	uncultured_Caudovirales_phage	8.0e-26	96.8
WP_015365152.1\|1703766_1704171_-	DUF1064 domain-containing protein	A0A1W6JPS8	Staphylococcus_phage	2.1e-68	94.0
WP_015365153.1\|1704180_1704405_-	phage protein	A0A2H4J9V2	uncultured_Caudovirales_phage	5.7e-31	91.5
WP_015365155.1\|1704571_1705357_-	ATP binding phage protein	A0A1W6JPS4	Staphylococcus_phage	1.5e-142	96.9
WP_015365156.1\|1705369_1706185_-	hypothetical protein	A0A2H4JEZ8	uncultured_Caudovirales_phage	1.3e-83	62.5
WP_015365157.1\|1706177_1706399_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015365158.1\|1706388_1707063_-	phi PV83 orf 19-like protein	A0A1W6JPR0	Staphylococcus_phage	1.5e-122	95.5
WP_011276639.1\|1707074_1707620_-	hypothetical protein	A0A0H4IPV5	Staphylococcus_phage	3.2e-83	83.1
WP_015365159.1\|1707941_1708376_+	DUF4145 domain-containing protein	A0A1X9I5M7	Streptococcus_phage	3.5e-24	40.3
WP_015365160.1\|1708559_1709345_-	hypothetical protein	A0A0H4ITW3	Staphylococcus_phage	1.1e-134	94.5
WP_015365161.1\|1709345_1709831_-	hypothetical protein	A0A1W6JPS5	Staphylococcus_phage	9.1e-82	99.4
WP_015365162.1\|1709823_1710051_-	hypothetical protein	A0A1W6JPR3	Staphylococcus_phage	2.4e-37	98.7
WP_015365163.1\|1710321_1710567_-	hypothetical protein	A0A1W6JPQ6	Staphylococcus_phage	1.1e-40	100.0
WP_015365164.1\|1710569_1710887_-	DUF771 domain-containing protein	A0A2H4JAF6	uncultured_Caudovirales_phage	8.1e-55	100.0
WP_015365165.1\|1710942_1711323_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	3.0e-32	56.3
WP_015365166.1\|1711309_1711507_-	hypothetical protein	NA	NA	NA	NA
WP_015365167.1\|1711520_1712276_-	hypothetical protein	A0A2H4J8U5	uncultured_Caudovirales_phage	1.7e-127	92.0
WP_015365168.1\|1712300_1712528_-	hypothetical protein	A0A1Q1PVU3	Staphylococcus_phage	2.4e-32	97.3
WP_015365169.1\|1712699_1713311_+	helix-turn-helix domain-containing protein	A0A2H4JCV3	uncultured_Caudovirales_phage	1.2e-107	96.6
WP_015365170.1\|1713546_1713735_+	hypothetical protein	NA	NA	NA	NA
WP_015365171.1\|1714460_1715486_+\|integrase	site-specific integrase	A0A2H4JB04	uncultured_Caudovirales_phage	4.0e-196	99.7
1715548:1715569	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1789900 : 1798370

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002465399.1\|1789900_1790467_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-29	40.3
WP_015365199.1\|1790469_1791498_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.7e-67	45.0
WP_002465406.1\|1791490_1792975_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-46	32.8
WP_002465405.1\|1792953_1795143_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.8e-138	38.8
WP_015365200.1\|1795135_1795807_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_002450716.1\|1795808_1796069_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002465403.1\|1796068_1796773_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.5e-48	43.8
WP_078103911.1\|1796773_1797940_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002465404.1\|1797887_1798370_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.4e-20	42.7

DBSCAN-SWA_5

2054270 : 2061473

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015365293.1\|2054270_2055419_-	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	3.2e-24	39.6
WP_002466647.1\|2055402_2055996_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.9e-37	40.4
WP_015365294.1\|2056320_2056992_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.2e-65	55.1
WP_002466648.1\|2056993_2057413_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.7e-07	26.9
WP_002466643.1\|2057412_2058126_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	6.5e-52	42.7
WP_015365295.1\|2058228_2058828_+	hypothetical protein	NA	NA	NA	NA
WP_015365296.1\|2059294_2060401_-	glycosyltransferase	A8CG95	Salmonella_phage	1.4e-61	41.0
WP_002467169.1\|2060630_2061473_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.6e-52	41.7

DBSCAN-SWA_6

2394582 : 2412953

Staphylococcus_phage(66.67%)

terminase,integrase

attL 2389350:2389365|attR 2405615:2405630

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2389350:2389365	attL	NA	NA	NA	NA
WP_015365387.1\|2394582_2395104_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	4.9e-57	64.4
WP_015365388.1\|2395108_2395450_-	MarR family transcriptional regulator	A0A2H4JEH8	uncultured_Caudovirales_phage	5.1e-15	39.3
WP_015365389.1\|2395452_2395911_-	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	5.1e-34	59.3
WP_015365390.1\|2395971_2396682_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	7.4e-32	32.2
WP_015365391.1\|2396711_2397053_-	hypothetical protein	A0A1W6JQF3	Staphylococcus_phage	1.6e-32	62.4
WP_015365392.1\|2397500_2398142_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	8.6e-88	73.2
WP_015365393.1\|2398146_2398665_-	hypothetical protein	NA	NA	NA	NA
WP_015365394.1\|2398975_2400676_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	8.2e-279	83.8
WP_015365395.1\|2400690_2401563_-	hypothetical protein	A0A2H4JEH3	uncultured_Caudovirales_phage	1.3e-131	77.9
WP_015365396.1\|2401656_2401965_-	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	2.9e-33	68.6
WP_015365397.1\|2401964_2402327_-	hypothetical protein	NA	NA	NA	NA
WP_015365398.1\|2402328_2402541_-	hypothetical protein	Q4ZE76	Staphylococcus_phage	7.6e-17	64.2
WP_015365399.1\|2402689_2402962_-	hypothetical protein	Q4ZE77	Staphylococcus_phage	2.8e-16	41.1
WP_015365400.1\|2403117_2403711_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015365401.1\|2403855_2404350_+	hypothetical protein	I6SAW2	Staphylococcus_virus	1.0e-27	45.7
WP_015365402.1\|2404385_2405603_+\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	1.4e-176	78.7
WP_015365403.1\|2405604_2405988_+	hypothetical protein	NA	NA	NA	NA
2405615:2405630	attR	NA	NA	NA	NA
WP_015365404.1\|2406009_2406843_+	hypothetical protein	Q4ZC41	Staphylococcus_virus	1.1e-132	85.2
WP_002451519.1\|2407018_2407261_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_002466536.1\|2407305_2407821_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	2.7e-60	73.1
WP_002451521.1\|2407842_2408139_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_002466546.1\|2408514_2409336_+	lysozyme	A0A291I9H5	Lactobacillus_phage	1.8e-37	46.4
WP_002451523.1\|2409397_2409589_+	hypothetical protein	U3PCX8	Staphylococcus_phage	2.2e-23	81.7
WP_002451524.1\|2409754_2410852_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002451525.1\|2410863_2411067_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_002466537.1\|2411087_2411966_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_002466534.1\|2412113_2412953_-	chromosome partitioning protein ParB	A0A1C9EHY8	Gordonia_phage	2.5e-10	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020274

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_020164

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection