CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019676	Nostoc sp. PCC 7107, complete sequence	27 crisprs	PD-DExK,cas3,csa3,cas2,cas1,cas4,cas6,2OG_CAS,csc1gr5,csc2gr7,cas10d,WYL,c2c9_V-U4,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,DinG,DEDDh,csx3,csm4gr5,csm5gr7,csm6,RT,c2c5_V-U5	3	25	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019676_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_1

426065-426177

Orphan

Consensus_repeat	Method
TCTGTCATATCTGTCGTTTCTGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019676_1

>merge|NC_019676|1|426065-426177|CRISPRCasFinder
TCTGTCATAACGATCATTTCGATCATTTCGGTTATATCTGTCGTCTCTGTCATATCTGTCGTTTCTGTCATATCTGTCGTTTCGGTTATATCTGTCATTTCGGTCATAGCGAT

>NC_019676|1|1|426065-426177|CRISPRCasFinder
TCTGTCATAACGATCATTTCGAT	CATTTCGGTTATATCTGTCGTC
TCTGTCATATCTGTCGTTTCTGT	CATATCTGTCGTTTCGGTTATA
TCTGTCATTTCGGTCATAGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015111280.1\|410783_414884_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015111290.1\|426909_428277_+\|cysteine-desulfurase-like-protein	unknown	unknown	gnl\|CDD\|273906
NC_019676.1\|WP_015111298.1\|436843_437077_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015111282.1\|416646_417411_+\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|226692
NC_019676.1\|WP_015111284.1\|418774_420214_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	unknown	unknown	gnl\|CDD\|274644
NC_019676.1\|WP_015111286.1\|421435_424138_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237425
NC_019676.1\|WP_015111294.1\|433126_433963_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_019676.1\|WP_015111295.1\|433989_434673_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015111283.1\|417476_418595_+\|TIGR00303-family-protein	unknown	unknown	gnl\|CDD\|235300
NC_019676.1\|WP_015111285.1\|420393_420726_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015111299.1\|437083_437482_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350220
NC_019676.1\|WP_015111296.1\|434746_435376_-\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|180325
NC_019676.1\|WP_015111281.1\|415932_416634_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_019676.1\|WP_015111297.1\|435558_436368_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377378
NC_019676.1\|WP_015111291.1\|428322_429552_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
NC_019676.1\|WP_015111288.1\|424878_425610_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NC_019676.1\|WP_015111287.1\|424382_424847_+\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143629
NC_019676.1\|WP_015111293.1\|432498_433038_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019676.1\|WP_015111279.1\|408617_410696_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NC_019676.1\|WP_015111292.1\|430107_432432_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015111290.1\|426909_428277_+\|cysteine-desulfurase-like-protein	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	1.86793e-156
NC_019676.1\|WP_015111282.1\|416646_417411_+\|DUF2232-domain-containing-protein	gnl\|CDD\|226692	COG4241, COG4241, Predicted membrane protein [Function unknown].	8.56134e-58
NC_019676.1\|WP_015111284.1\|418774_420214_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	gnl\|CDD\|274644	TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_019676.1\|WP_015111286.1\|421435_424138_+\|PAS-domain-S-box-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.99174e-77
NC_019676.1\|WP_015111294.1\|433126_433963_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	7.00428e-111
NC_019676.1\|WP_015111283.1\|417476_418595_+\|TIGR00303-family-protein	gnl\|CDD\|235300	PRK04447, PRK04447, hypothetical protein; Provisional.	1.68213e-167
NC_019676.1\|WP_015111299.1\|437083_437482_+\|PIN-domain-containing-protein	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.48354e-17
NC_019676.1\|WP_015111279.1\|408617_410696_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.16693e-63
NC_019676.1\|WP_015111281.1\|415932_416634_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.42995e-47
NC_019676.1\|WP_015111296.1\|434746_435376_-\|precorrin-8X-methylmutase	gnl\|CDD\|180325	PRK05953, PRK05953, Precorrin-8X methylmutase.	3.49252e-143
NC_019676.1\|WP_015111297.1\|435558_436368_-\|TPM-domain-containing-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	1.07446e-08
NC_019676.1\|WP_015111291.1\|428322_429552_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	3.04303e-118
NC_019676.1\|WP_015111288.1\|424878_425610_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	5.35327e-60
NC_019676.1\|WP_015111287.1\|424382_424847_+\|CYTH-domain-containing-protein	gnl\|CDD\|143629	cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.	1.95944e-82
NC_019676.1\|WP_015111293.1\|432498_433038_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.19938e-40
NC_019676.1\|WP_015111292.1\|430107_432432_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.41458e-61

>NC_019676.1|WP_015111288.1|424878_425610_-|cation-transporter
MQSSQVKQKFQALWTALVLLSVFFCVELSVGIWSHSLSLLADAEHILTDVGALGLALTASWLSQSISKHNIFGRYRLDILAALVNGISLACVAGWIIKEALVRLQSPDIEILGLPMLTTALIGLGINSFNAFYLHGCSHQDLNIRGAFLHLLADVASSVGAVLAAIAVIWLNWTWADGVISLLVAVLIACFAAYLLIQSVQCLRGQITDITNAACMCNLPTAECGDRNQAEKMLFPSLEELIK
>NC_019676.1|WP_015111287.1|424382_424847_+|CYTH-domain-containing-protein
MAKEIERKFLVKGDGWRNLGVGSVYRQGYIATQKAVTVRVRIANSRGYLTIKSPSVNYSRAEFEYEVPLADAQEMLDTLCDRPLIEKVRYKVKLGDLTWEIDEFDGDNKGLIVAEVELSNEKQQIELPEWIGEEVSHESRYFNSNLARFPFSKW
>NC_019676.1|WP_015111286.1|421435_424138_+|PAS-domain-S-box-protein
MPLQNQLINWPNLYHLINHDPLTINPDSYLVDAIILMSQKQAQSLSLSSLDRYFKTDICNQQKNSCILVVEAGYLLGIITAKDVLNIIAAGVNITQTKVAEVMVTALITLRQSYATDIFTAWSLLRHYQISYLPIVDNQGKLTGIVTDSILLQAFNRDIIVGIKTACQQTKKNYRKINGISCSIHHHLQPGIEQKSSTFLSTHQEFPETRKKLQMVEEKLHQTQDELEKLVAENQRLQQKIFEYQQAEIAWQNREKLYCQQKEESLRESEARLSLALEAADMGIWDWKLQTDETLWSANMGLLYGLADGTACPTKEDFLELIHPEDRQAFTQAVTATIQQGVKFVVEYRAVWPDSSIHWLNSTGQLYYNEDGQPSRLTGTTRDISEQQAALRERKQAEQKILEQAALLDIVTDAIVVRDLQNRILFWNQGAEHLYGWSEQEAVDQNADELLFKQPSAKILAAIEKVIDSGTWQGELHKVTKFGTEIIVASRWTLMQDSTGKPQSILIVDTDITQKKQLEEQCFRTQRLESLGTLAGGIAHDLNNILTPILAASQLLQLKFSQDTDHYYQLMAIIENNAKRGADLVKQVLSFARGFKGERTIILIKHLISEMLLIAKQTFPKSIEFAIAIPDNLLAVSGDVTQLHQVLMNLVVNARDAMPDGGKIAISAENRLIDEAYAQMNLDAQAGHYIELTVADNGMGMSPEILDRIFEPFFTTKDMGTGTGLGLSTVLGIIKSHGGFINVSSKVGKGTKFKLFLPAIEGRQVIKSENLVVPLGEGELILVVDDEAKILEIATIVLENYNYKILTASNGIEAIALYAQHKHQIKAVLMDMIMPEMDGMTAIRTLQKMNPQVQIIACSGFNHQENLTEVVNANIQLVLPKPFTAQDLLNSLQHVLRNQN
>NC_019676.1|WP_015111285.1|420393_420726_-|hypothetical-protein
MDFQDFLRHKFTHVAIGEFKPGKFETAKQLYEEAVLTYTTGFKGAYLLQEPGTDRGISIIFWESVEDMEANQNQVYQHILKKMMPLFVEPPKTVVYELVCEINPKETEEV
>NC_019676.1|WP_015111284.1|418774_420214_-|deoxyribodipyrimidine-photo-lyase,-8-HDF-type
MSELILFWHRRDLRISDNTGLATARSQSPKVVGVFCLDRNILERDDIAPVRVTYMIGCLQALQERYAQIGSQLLILHADAMEVIPALAEALNAKAVFWNWDVEPYSQIRDRNIIDALKAKGIQFLSENWDQTLHSPAEIRTGSNTPYTVYTPFWKNWTSKPKAPPVATLQTVEGLTPAEQEIAQNAGAIPLPTAKDLGFIWDSDLILSPGEASAQARLAEFTYKTITEYQEQRNFPATDGTSQLSAALKFGAIGIRTVWQATVAAQENSRSEETTTSIRTWQQELAWREFYQHAMYSFPELAEGAYRDAFKNFPWETNDAHFQAWCEGKTGYPIVDAAMRQLNQSGWMHNRCRMIVASFLTKDLLISPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQTQKFDPDGEYIRRWLPELRSIDNEYLVTGKITPLERRAVSYPEPIVDHKQRQQQFKQLYQQQKEIMR
>NC_019676.1|WP_015111283.1|417476_418595_+|TIGR00303-family-protein
MISIYSQIEQGKAWINKYRGNLPVFACVLGFTETALIPGISAAGSTPEDRKYTACADAEFLYYGAEHQPQYSLPPLTAGASPVLISRAVVEALKIPVYLFNAGLPQFPAVPAIDLGGSLAQCVSTGKAMELATVKHLLEQGMIWGDRLAAEVPQSYVILSECVVGGTTTALAILTALGIDAIGKVNSSHPICNHQQKWQIVQSGLQKIPHSSHPLEIVAAVGDPMQVVVAGMAIAASRRCGVILAGGTQMLAVYALTTAISQALNLFWQPTEVIVGTTRWVAEDPTGKTVDLALSLDKISNTQGTNPPLLSTQLSFANSRYTQLQAYEQGFVKEGVGAGAACIAAYLYQNWSQSQLLVAIEDQFQRLCQSKV
>NC_019676.1|WP_015111282.1|416646_417411_+|DUF2232-domain-containing-protein
MSIVDSLPEEPEESPSSESQLSNQEQLQQNHSPNHAGNHSQLQSPHLKAVAPLRMVETAFLASTASLIWFINFYFPLGPVLRIFFSVPIALVYLRWGQRAAWMAAVTSGLLLSVLMGPVRSLLFVMPYAFMGVLLGATWHRRVPWIVSITLAALLGTLGFFFRMWLLSILSGEDLWIYLINQVTEITEWIFLKLGLLNTPSVFLIQVGAFALVVINNFIYLFVVHLAAWLLLDRLGNPIPRPPRWVQVMMDYEA
>NC_019676.1|WP_015111281.1|415932_416634_+|Crp/Fnr-family-transcriptional-regulator
MGDRYSLQEEPIHPWIRTAPFFQGLPESVVEAALIHLVTRTHPANQVILLENDWGGSVYFIFEGWVKIRTYNLEGKEVTLNILGKGELFGEMAALDEVPRSTDVITLTPTVIGSLPSQDFVKLLQIEPLAGVRLSKLMARRLRQVNRRLRLRESDSQSRVADTLLFLAEGQGKRSLTGTEIPNLPHRELSSLSGLARETVTRVLTRLEKKGLIQRDQDTISIPDVLALERLIV
>NC_019676.1|WP_015111280.1|410783_414884_-|hypothetical-protein
MTSRADEIQKLIADIDNLLTNNGKRLPKLLSGQAPEAREVLERVRNFLVNLKETEDLQGYIPQPTGQMQTSPLLAKFAEQVNHQSSGELSPSESAENNVLSSQFKSELAILIQPLQAELTALLQERSTLMQEIRQLEQKRLQNYSLSQQLSHQEQIIGEFLQVLMSRLVPTVAPHIKEHQANELNAVSSSQHNSIERTAATGVSALESSTQVERLTQFAKELDQRLLSLDGTVNVVFDALQRNINTYHESLSQALARMHSTGLQGEQLLVSFLNNWTQQLQQLPAIIPAATVQETSKRSPFPTKEDTVTVETVPPAITKTVATNPALELPQPEVEFADDLAANDLDAMLLELTGIVTQAVDSSTTPPELEGFEDWDELADDTPQQPLSSPSLLPTPEAVTPPPELFEMFSDSAPQNLELTDTDEVDQLYASLFNISSVNQPSVEPTLEEPTPDFSANIVDTAPLSTPVKEPETSPDARENSTKLNTHDYPPLTPLFDGNVGLPESIFTQSDAGLFEPSHTPPLNIPTDSPQFIDLSSDFQQELFFEEEPELFSTTLSYSPALRENIPVQPEHSDTITSLSELFAEASSEENLWPGLSPAEIALTLDEPTSEIAYTSDVEPQENLSDIYIAASPQENLLAPEVIQSANLPEISLNESQLQQLNQDLANFDELINYQSADVYSLADSEPPDITFPHPQTVDHTPNVAFSRPAVPPVAPISLPQTQADLNFSPANEKKKEATTGSISPSQIELTVDVHNSVWYLGIDLGTTGISAALLNRSQSVVYPIYWSAENIPGANSFQHSFRLPAEVYLPNASVSNGGINVKSSQCSAQLKPYLQVAIPYKNEEQKWEPVLQFNEFSAGPLIWVVRSLSKLLLTLKSDRQSTTQGLVAMAVGINQPTFHTIVGKIAGVICTCPSSWSEQYRFNVREALLTSKLIQHPQQVFFVEEAIASLISLFDQSHGEIIQVSDRTGLQPVQTTEPLLGNTLVINIGATATEMALVDVPENLLQLAHQDFMLHSFPYASKGIEQDIICQLLIPPKYRQSRKDIAENGKNNTSNPWHWQTAFPDIDKMQWQSLGLDKFDLPRAGEPDIGVRIRLQQRLESSILGQAALESALALKLILQHQENFTLDLADQQWKLQRRDLENQVFVPFVRRLNRELNKLLVARGIPTEAINQAILTGGVASLGVVHHWLKQKLPNAKIMQDAYLGENGAPNCSRVALGLAMLPLHPQILEEPRQQYTDYFLFTELLRLLPERSLSFNEVLQLFEGRGINTSICQQRLLAFLEGELPAGLIPSPPESAWLTQNSSQNLDYQAIASAPLFEKQGNLSYRPNSQQLSALRRYLAAVKASTQQSLEEPYTVNFANVPL
>NC_019676.1|WP_015111279.1|408617_410696_+|cation:proton-antiporter
MALQSLAESPIVAFTILLTVIFTVPPIFEKLRLPGLVGLLVAGVILGENGLKLLNSESDTIKLLSDIGKIYLMFVAGLEIDLEQFRKTKNRSIGFGTLTFLVPLIAGICVGRLFNFSWNASFLIGSLLASHTLLAYPIVSRLGVVTNEAVTVTIGATIFTDTGALLVLAICVGIHEGEFSALSLATLLGGLAIYSLVVLFGFDWAGKEFFRRSGDEQSNQFLFILLALFLASVGAQVIGVEKIVGAFLAGLAVNDVLGRSPVKEKIEFIGSVLFIPCFFVDMGLLINIPAFLKTLSSVWLTVVIVVALIGSKFIAAFLAKLFYRYNTAEMLTMWSLSLPQVAATLAAALVAYQTVNPAGERLINEGVLNSVIVLMLVTAILGPVITSRFATALQVSEADLATDSLSTWWESHEPEIEEQQERFTVVVPIYNPQTQRYLIEMAALLARHESGRIVPLAITKALIQMDDPQLVTALEQSQKRLQLAKEISQEFDVEVAPAIRIDDDAALGISRASRERNANLVVMGWSQTTGFRARLFGSVLDSVFWSAHCPVAVTRLLSSPTTIQRILVPVGDLTRQTIGAVRFAQILADVNQAEVVLLHVSDRKTRPALVEKFTSQLSEIVTKSQLQVKTNIQTVKGDDIARVIIREAQSFDLAVLRSVRYRTAGGLAVSQVTTQILRELKCSIVLLGEPHS
>NC_019676.1|WP_015111290.1|426909_428277_+|cysteine-desulfurase-like-protein
MEPLDLKWIRSQFPALTQKINGQPAIFFDGPGGTQVPGAVLDAMNDYLVRSNANAHGYFATSARTDATIASARAAIADFLGCHSDEVVFGANMTTLTFAFSRAIGRELHPGDEIIVTRLDHYANVSSWYALEEQGATIRVVDINVEDCTLDMNELERLINPKTRLVAVTYASNAVGTINDIAAIARLAHAVGAWVFVDAVHYAPHAPINVHSLDCDFLACSAYKFFAPHVGILYGKREHLERLQPYKVKPAPDEVPSRWETGTLNHEGLAGVVAAINYLTKLGCHVSPAIDNELVAALIEADKEGLQTFSCPRFLKSSEQPSITSAYHSRRAALVTAMSAIQQYERELSHKLISGLLEIPGLSCYGITDITRFAWRTPTVGVRLANKTPESIAKALGDRGIFTWHGHFYALGLIERLGVEASGGLLRIGLAHYNTVEEIHQLLYMLHEIAALPDD
>NC_019676.1|WP_015111291.1|428322_429552_+|amidohydrolase/deacetylase-family-metallohydrolase
MENYIKYYDLVLLDALVIDPSQSLNGRFDIAIRDGKIAAISQQLKTYKSKLKFAAGNYLICPGFIDLHVHVYEWKTNFGVPADDVGINAGVTTIVDQGSSSPFTFSEFKSDIVEKSQTDVRSFLLVNHAATQTIGNIVSGLENPEKIDRETLIKVAQANPEIVRGFKVHADSGSISRWGMGVLKLAREVGDRTNLPLYVHTGELFPVDETNRPNPEKVVENALSYMKAGDILGHCYSCQPDGLMGNRTQVPEWLFAAIERGILLDLGHGLKFSFETARRMIAQGVLPHTISSDAHGNFKQMHDDSTLNYSLCGGISKLLALGLNLADAIAAVTINPSRVLKAEAELGTLKVGSIADITILKLVEGDWLFVDALEQPLKAKHKLIPIGVIRSGELIQPNCRLLRDLVAIA
>NC_019676.1|WP_015111292.1|430107_432432_+|CHAT-domain-containing-protein
MNYKLLFLPLLLSSLLLSDAVRATSKTQDLQIAQQPTQSNATRAAAEQALNEGLELYKQGTAESLKQALAKLQIALPLWQKLGDKSYEAVTLLSIGRVYDALGEKQQALSYYNQALPIWLAVGDRFGEATTLNNIGKVYDDLGKKQQALSYYNQALLLRRDVGDRSGVATTLNNVGGVYDDLGKKQQALSYYNQALPIRRALGDRSGEANTLYNVAFLELSKGNLQTALTQIEASIKIIEELRTKIDDKELRTSYFATVQDYYQFYIDLLMQLHKKEPTKGYAAQALHISERSRARVLLELLTEANAKIRKGVDPKLLAQEQSLQEQIDAKDKLRRDLMSKSAPATAVKKLEQEIANLLSQYQQLQTQIRTTSPKYAALKYPEPLKLAQIQQQLDANTVLLQYSLGAERSYLWVVTPNSLDSYELPPQAQIEKAANDFRQSIVRVVASPKQQAAAAKQLSQIILAPVANKLANKRLVIVADGALQNIPFAALTEPTAQESYQPLLVNHEIVNLPSASTIAILRQETQKRPKAPKAIAILADPVFSTDDSRVTGKPENNSITPDLDLQRSALSRSARNLNRNGWDRLNGTRQEAEAILKLGSPTDSLAVFDFDANYDWVTNSKLSQYRVIHFATHGFADDTNPELSGIVLSLIDKQGKPQRGYLRLNDIFNLDFPADLIVLSACQTGQGKEVQGEGLVGLTRGLMYAGSPRLVLSLWNVDDQGTKELMSEFYRQMWQEGKSPVAALRAAQLSLWQNPNWRKPLYWAAFTLQGEWR
>NC_019676.1|WP_015111293.1|432498_433038_+|Uma2-family-endonuclease
MSLNIQDLENMQVDYPDYRMELVDGNIVVMSPSGYESEEVGTEFARILGNWVRPRKLGRVVGSSAGFKLPNTNLRAPDVSFIKAERLKRSTEDYAELVPDLVVEVKSKTDSVDKLREKIQEFIGLGTQIGILINPKTRTMEVYGSGEQVILRDGDVLTLPDLFPGWEVAISEIWSPVFE
>NC_019676.1|WP_015111294.1|433126_433963_+|4-hydroxy-tetrahydrodipicolinate-reductase
MTNQAPIPLIINGAAGKMGREVVKAVAQAPDLTLMGAIDRNPEHQGKDAGELAGLTEPLEVPITDQLEPMLGYVAGERQLPPGVIIDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAEKASTGCLIIPNFSIGMVLLQQAAITASKYFDHVEIIELHHNQKADAPSGTAIQTAQLLAELGKTFNQVIVEETEKIPGARGSLADEGIRIHSVRLPGLIAHQEVIFGAAGQIYTLRHDTSDRACYMPGVLLAIRKVSQLKSLVYGLEKIL
>NC_019676.1|WP_015111295.1|433989_434673_+|hypothetical-protein
MLVPLTRQKFEQVIPLIATGQQYKYYWGKFSNFLQRLLVSVVSVVVILLVKALFGLDFGPILFFLGVLGAMFWLWFPVFQASIRNAKCRRYKYCGFFRGRILDWWITDKLMGKQETVNSKGELVIVENREKRINLEVGDNTGFSVELDAPLRPFHKAIARGQIAEMIVMSNRPDLSTIEDFSDVYIPSRDIWVNDYPYLRRDFFSEVSRRLREGQNDKPRRRRKYED
>NC_019676.1|WP_015111296.1|434746_435376_-|precorrin-8X-methylmutase
MEWHVTDAQSLAIIDSEIGDHAFSPAEYEIVRRVIYATADFEYKSLIRFSEHALQAGAAALAARTTIVVDVPMVQVGIAYDIQNTFANPVYCSMETVTRPQKEKTLAAWGIETLAKRYPEGIFVVGQAQTALTALMDLIEAEEILPALIIATPVGFVDVDTAKSRLQDSLVPCITIESRKGNAVVAAAVVDGLVDLAWQAYGQNGNRQS
>NC_019676.1|WP_015111297.1|435558_436368_-|TPM-domain-containing-protein
MQSCFWRRILVSIAIFFVAGSIWVANPSAALAYDNPELLPNFQTPVIDLAKTLTDIQEDKLVSDLKQFETETGWKLRVLTQYDRTPGRAVINYWGLDDKSILLVADSRGGNILSFSVGDAVYELLPRTFWIELQTRFGNLYFVREQGEDQSILQALDSVKGCLIKGGCNVVPGLPREQWILTLVTSIIGGIICGFAAQPRNDKQIVAWQWALIFSPLWGMLFIAFGIGPVVTRTSDWLPLVRNISGFFIGALVAYLSPVFSRPSSSPEL
>NC_019676.1|WP_015111298.1|436843_437077_+|hypothetical-protein
MLQSIEGVYKNGKVELTELPPGISESMVIVTFLESKKTQQPTQIMHFGMFSGNQQSTEADFHITEFHGDSEDSLDWS
>NC_019676.1|WP_015111299.1|437083_437482_+|PIN-domain-containing-protein
MQYVIDTHALIWFLEGNTRLGAKAKAILSHPDSQLVIPATTLAEAVWIVERGRTSIPHPQDVISVVEADPRVVIYPLDKDIIAMTMSLSAINEMHDRQIVATALVLASKGDVVQLLTCDQNITASALVAIVW

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Crispr_ID: NC_019676_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_2

532634-532730

Orphan

Consensus_repeat	Method
ATGATTTGGGATAATTATCTGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_2

>merge|NC_019676|2|532634-532730|CRISPRCasFinder
ATGATTTGGGATAATTATCTGCGTCCATCTCCGTTGTCAAAAGCAAATTGCTGATTTGCGCGGATAGGCACCAATGATTTGGGATAATTATCTGCGT

>NC_019676|2|2|532634-532730|CRISPRCasFinder
ATGATTTGGGATAATTATCTGCGT	CCATCTCCGTTGTCAAAAGCAAATTGCTGATTTGCGCGGATAGGCACCA
ATGATTTGGGATAATTATCTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015111364.1\|528121_528808_+\|magnesium-protoporphyrin-IX-methyltransferase	unknown	unknown	gnl\|CDD\|236059
NC_019676.1\|WP_015111363.1\|526505_527795_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_019676.1\|WP_015111369.1\|532774_534088_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_019676.1\|WP_015111362.1\|525386_526445_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NC_019676.1\|WP_015111367.1\|531051_531438_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015111374.1\|539931_541578_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NC_019676.1\|WP_015111359.1\|520300_521116_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NC_019676.1\|WP_015111372.1\|537464_538637_+\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180967
NC_019676.1\|WP_015111376.1\|548406_549285_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_019676.1\|WP_015111373.1\|538744_539935_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340871
NC_019676.1\|WP_015111370.1\|534243_536889_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238504
NC_019676.1\|WP_015111371.1\|536925_537402_+\|M67-family-metallopeptidase	unknown	unknown	gnl\|CDD\|163701
NC_019676.1\|WP_015111366.1\|530061_530874_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_019676.1\|WP_015111377.1\|549543_550707_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274465
NC_019676.1\|WP_015111375.1\|541694_542438_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NC_019676.1\|WP_015111368.1\|531612_532476_+\|Tab2/Atab2-family-RNA-binding-protein	unknown	unknown	gnl\|CDD\|368938
NC_019676.1\|WP_015111378.1\|550850_551357_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_019676.1\|WP_044499578.1\|523200_524925_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	unknown	unknown	gnl\|CDD\|236465
NC_019676.1\|WP_015111365.1\|528915_529884_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236011
NC_019676.1\|WP_015111360.1\|521180_522791_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|227621

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015111364.1\|528121_528808_+\|magnesium-protoporphyrin-IX-methyltransferase	gnl\|CDD\|236059	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated.	2.15755e-147
NC_019676.1\|WP_015111363.1\|526505_527795_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_019676.1\|WP_015111369.1\|532774_534088_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	3.67646e-102
NC_019676.1\|WP_015111362.1\|525386_526445_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_019676.1\|WP_015111374.1\|539931_541578_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.4597e-19
NC_019676.1\|WP_015111359.1\|520300_521116_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	1.66362e-62
NC_019676.1\|WP_015111372.1\|537464_538637_+\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180967	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB.	0
NC_019676.1\|WP_015111376.1\|548406_549285_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_019676.1\|WP_015111373.1\|538744_539935_+\|MFS-transporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.15114e-09
NC_019676.1\|WP_015111370.1\|534243_536889_+\|chloride-channel-protein	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	9.53194e-153
NC_019676.1\|WP_015111371.1\|536925_537402_+\|M67-family-metallopeptidase	gnl\|CDD\|163701	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	1.02621e-46
NC_019676.1\|WP_015111366.1\|530061_530874_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	9.38529e-22
NC_019676.1\|WP_015111377.1\|549543_550707_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274465	TIGR03169, selenide_water_dikinase_putative, pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.	0
NC_019676.1\|WP_015111375.1\|541694_542438_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.92197e-120
NC_019676.1\|WP_015111368.1\|531612_532476_+\|Tab2/Atab2-family-RNA-binding-protein	gnl\|CDD\|368938	pfam06485, DUF1092, Protein of unknown function (DUF1092). This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.	1.75869e-156
NC_019676.1\|WP_015111378.1\|550850_551357_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	4.47061e-64
NC_019676.1\|WP_044499578.1\|523200_524925_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	gnl\|CDD\|236465	PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA.	0
NC_019676.1\|WP_015111365.1\|528915_529884_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236011	PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated.	2.57815e-170
NC_019676.1\|WP_015111360.1\|521180_522791_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	1.64284e-97

>NC_019676.1|WP_015111368.1|531612_532476_+|Tab2/Atab2-family-RNA-binding-protein
MGSIWEIDFYSRPILDENQKKVWEVVVCESPLDIRAQTDSLFRYAQYCPSTEVNSGWLRTALQEAIDKAGEAPIKVRFFRRQMNNMITKACQDLGIPAQPSRRTLLLNQWLQQRMEEVYPQEPGYQGGNNPSVRLDSPLPQRLPDALEGQQWVFVSLSAGELAEMPEWDIGFGEAFPLEMAQLSPEARIPGVLIFSPRALPLAGWMSGLELAFLRVDQSVGTRLILETGATESWIVANIKNPQLLVEAKGFAESKQQANGVHFIGVQSSPQAESFAGFWLLQEVILP
>NC_019676.1|WP_015111367.1|531051_531438_-|hypothetical-protein
MSKMGCTCGHSIIDRTDKIPYKGHLIKDQDKDVIFEGIASDVSLYIESLLTENQEEWLKRFPWLQGKDHRAVVWGIITQYYLKYIPHIYECENCGRLLIQENAKSQKFLCYLPSNPEIKGVLRSDQLS
>NC_019676.1|WP_015111366.1|530061_530874_+|IS5-family-transposase
MSKAYPSNLTRVQYEFLSDMIPEPKPGGRKREVDIWEVLNGIFYVLVEGVRWRCLRRATPTLPGDFPVWQTVYSYFRKWRKDGTWLKIHDSLRQWTRIEEERHRSPSEAIIDSQSVKSAAMVSQSVGFDAGKKIKGRKRFMTVDTLGLVLRVLVTAANVGEREGGKLVLKRVKQSQKQVSRLTTLWVDGGFDGEPFMQWVMNFCRWIVQVVLRPEQTKGFVLLKKRWVVERTFGWVMGCRRLVRDYELLPETSETFIYLAMIRIMVRRLA
>NC_019676.1|WP_015111365.1|528915_529884_+|DNA-polymerase-III-subunit-delta'
MSTNLFAQLVGQQQAIELLTEAVRQNRVAPAYLFVGTDGVGRSLAARCFVELLFSSTVETRLVASVQNRVRQGNHPDLLWVQPTYQYQGQRLTAAEAAEKKLKRKAPPLIRLEQIREITQFLSRPPLEASKNVVVLEEAQTMAEPAANALLKTLEEPGQATIILIAPSPESVLPTLVSRCQKIPFYRLDTASLAQVLLQTNHQEVLQHPAVLNIAAGSPGNAIASYEQLQAIPPELLTNLTSAPKSSRHALELAKKIDKDLDTEAQLWLIDYLQHSYWQQWHQSGIVHQLEQARKALLVYAQPRLVWECTLLSVYQQCNLQN
>NC_019676.1|WP_015111364.1|528121_528808_+|magnesium-protoporphyrin-IX-methyltransferase
MNAADDKTIVREYFNSTGFDRWKRIYGDGEVNKVQLDIRYGHQQTVDKVIGWLKNDGNLSTLSICDAGCGVGSLSIPLATEGAKVYASDISEKMVEEGKQRALEALGNSTNPSFAVQDLESLSGKYHTVICLDVLIHYPQDKADEMISHLCSLAESRIILSFAPKTCALSLLKKIGGFFPGASKTTRAYLHREADVVKIIEKNGFTVQRQEMTKTRFYYSRLLEATRN
>NC_019676.1|WP_015111363.1|526505_527795_-|phosphopyruvate-hydratase
MSNIVDTAIEAIVAREILDSRGRPTVEAEVHLLNGAVGLAQVPSGASTGTFEAHELRDDDKSRYGGKGVLKAVQNVKEVLTPKLLNLDALNQELIDRTMIAVDGSANKSNLGANAILAVSLAAAKAGAESLGIPLYRYLGGPLANLLPVPLMNVINGGAHAANNVDFQEFMIVPVGASSFKEALRWGAEVFATLSKVLDEKGLLTGVGDEGGFAPNLESNQVALELLVAAIKKAGYKPGEEVALALDVAASEFYKNGQYVYDGKPHSPAEFIDYLGQLVDQYPIVSIEDGLHEEDWSNWQLLTQKLGSRVQLVGDDLYVTNATRLRKGIDEKAGNAILIKLNQIGSLTETLETIDLATRNSFRSVISHRSGETEDTTIADLAVATRAGQIKTGSLCRSERVAKYNRLLRIEDELGDRAIYAGAVGLGAK
>NC_019676.1|WP_015111362.1|525386_526445_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MGNFRRVPVGIVGASGYGGVQLVRLLMEHPEVELVYLGGESSAGKSFGDLYPQLAHLVNLPIEAVDPEVMAHRCEVVFLSLPNGLACQITPQLLEKGCKVLDLSADYRFSNLATYTSWYGQERSDRTAAATAVYGLPELYRDRISEAQLVGCPGCYPTASLLALSPLLKQGLIVPETAIIDAKSGTSGGGRQAKVNLLLAEADNSLAAYGVVRHRHTPEIEQICSELAGHEVTVQFTPHLIPMVRGILATVYATLRDPGLARDDLITIYNAFYRNSPWVKVCGSGVYPQTKWACGSNLCFIGVEVDPRTGRVIVMSAIDNLIKGQAGQAIQCMNLMLGWEETLGLPKLGFYP
>NC_019676.1|WP_044499578.1|523200_524925_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA
MSVAPQAGETTDHAAANPTFKFDSIDAALADLKAGRVIVVVDDENRENEGDLICAAQFATPDMINFMAVQARGLICLAMTGDRLDELDLPLMVTNITDTNQTAFTVSIDAGPHLGVSTGISAEDRARTIQVALNPATTPLDLRRPGHIFPIRAKAGGVLKRAGHTEAAVDLSRLAGLYPAGVICEIQNPDGSMARLPQLIEYARNYNLKIISIADLISYRLQHDRLVIRESIAELPTQFGHFKIYAYRHTLDNCEHVAIVKGDPATFKDEPVMVRMHSECLTGDALGSLRCDCRMQLQAALNMIESAGQGVVVYLRQEGRGIGLINKLKAYSLQDMGLDTVEANERLGFPADLRDYGMGAQMLMDLGVKNIRLITNNPRKIAGVKGYGLEVVDRVPLLIESNDYNSYYLATKAKKLGHMLLQTYLVTIAIHWQDDPQSVTKRYERLEKLRHFAKTNDLLLQEEARPLAIALFDEPSLTVHLGFDQAKVASCDWYKQTGHPYLQAVFQVLDNLATLPYIQKLEFLISSGCDPLTNLQIQLDRQIFSLDTLPSSVSHSLEKQKIYSFTKKSEYSIS
>NC_019676.1|WP_015111360.1|521180_522791_+|glycosyltransferase-family-39-protein
MQQNTIIHSWVRFLIIVLLVMAVLFRFFNLDSKIYSHDETYTSLRISGYTVAEVKQQLFNGHVITPESFAKFQGVNQQKGLSDTIMSLAKEDPQHPPLYYAIARFWLGIFGNSVTAIRSLSACISLLVFPGIYWLCRELFVVPLSLPWLAIAITAVSPIYLIYATEAQEYILWLVTIIISSAALLRALRLESKFPGKLPPDQFTIWSLYTVTLVLSLYTSLWSGFLAIAHSTYVITIARFQLNKTVRAYLLASIVAFFAFIPWMIIGLAKFLQFLLSNQGRQTELLPIPLLPFLLKQITRIFFDLDLVLDNNLNYLICAFLVILVGCAIYLLCRTTNYKVWLFIVILIVVPSLPLILPALMSGEIKLGSEPYFLPSYLGMQIAVTYLLATQLYNGSLTRRRIWQTIIALLIIGGLVSSRVYYQAETWWHKGVSYNNLQAAQIISRSARPLLISNVEGINYGNVFSLSYLVEPRVRFKLVNNQIIPNISDTYTQVFFLNISHTWRQQLSTQYQSPINLVYRNEYYSLWELRKSPSSP
>NC_019676.1|WP_015111359.1|520300_521116_+|GNAT-family-N-acetyltransferase
MEISYRNINYSLNSSSLADFPVLQTDKYILRLASTEEELESIFHLRFEVFNRELGLGFSSSSLTQMDRDKFDEVCHHLMLISKQTGQTIGTYRMQTYQMASQGLGFDAADVFNLSTIPDNVLQASVEVGRACIAKEFRNSQALLLLWEGLANYLIWSQNKYFFGCASLMTQSPRDAACTYHFFQKNNFIHSSILVYPNSQYGLKIDQYCLDKYEVDIPKIVKAYLSIGAKICSLPAIDRQFKTIDFLTISNLENFTRWHLPKCFAKKPNLP
>NC_019676.1|WP_015111369.1|532774_534088_+|TldD/PmbA-family-protein
MGSENFSHDTLAEQLLELAIKSGAEAAEVYQSHSLSRPVFFEANRLKQLETSQSEGTTLRLWRNGRPGLTVAYGDVSPQAMVERALALSELNPPETIELVSNSKPDYPDLGESVPIEVLVNWGKEAISIIRDTYPDVLCNSDWECDVETTRLVNSQGLDCYYTDTTLSCYMSAEWVRGDDFLSVSDGQTQRNILDPEKLAYQILQRLVWAKENVAPPNGRIPVLFTSKAADMLWGTAQAALNGKRVLEAASPWGERVNKQIVAPSLTLYQDPEAGPYSCPFDDEGTPTTALVFVKDGILQHFYGDRTTGRQLGVGSTGNGFRPGLGSYPTPGLFNFLIQPGSVPLRDLIRQLDNGLVVDQMLGGSGGISGDFSINIDLGYCVKNGQVIGRVKDTMVAGNVYTALKHVVELGNDADWNGSCYTPSLIVEGLSTTSRNP
>NC_019676.1|WP_015111370.1|534243_536889_+|chloride-channel-protein
MSLPVLSQRLLRWWQPRKGLAIAEASIIGIVAALSAVLLKVGSGWLGAWRVHTSHVFPAWLALPIVGLVFGYLAGWLVQRFAPEASGSGIPQVKATLANVPTQLSWRVAAVKLLSAMIVIGSGLTLGRQGPTVQVGASLAAGMSRFVPTSPDHRRQMIAAGAGAGLAAAFNAPLAGVIFIVEELLQDLSGITLGTAIIASFIGGVVSRLLGGGSLQLNQQLMHSSSQFSLPELPFFLLLGIFAGLLGALFNRGLIFSIKFYRTLHISLPLKVALAGFISGIIVAILPDYFRNNTGLREYIITSNSSGSVAAIAFIAQFILTLIAFGSGAPGGLFAPSLILGSCLGHVVGVWESHLLGIGSLPTYALAGMGGFFSAVSKVPITAIVIIFEMTTDFNLVLPLMIVAVVAYLVADKVMPGSLYDTLLQLKGISITKVASAEAILTTLTAKDVMQQQVETLDADMTLEETKQAFSSSHHRGFPVVKNSKLVGIVTQSDLTKTPNRNLPNDTLLKEIMNPAPITVTPLHNLSNVLYLLDRYQISRLPVIDRRKLIGIITRADIIRAEADHLNGGNVTPTPQAEPSYIVYQTRSPSIGRGRLLVPIANPETAATLLQIATAIARDRHYEIECVQIMLVSRHSSPCETPVRTAKSRRLLRHAEVLAKKWGIPLHTQIRVAHDPAQAILETIKECHIDMILMGWKGNTSTPGRIFGNVVDTIIRQATCEVLLVKLSNSQESIVKSQLSEITLTPQFNRWLIPTAGGPNAKFAMKLLPALLTLGNNPEIHLTQVFKPSELNPDMQILDQAIHQLTRHRQLSGTIFLATPVQADSVAEGVINLVKKQGFDVVILGATREGLLQQAIQGNIPEAIASGVESTVILVRGAINN
>NC_019676.1|WP_015111371.1|536925_537402_+|M67-family-metallopeptidase
MNTAVINILPQHIQIIRSHAESTYPEECCGIILGYINNQTKTVVEIIPTANAWSTESNNFAHNETEYSERRRYAIAPQVMLQVQKTARDKSLNIIGIYHSHPDNPAIPSECDRQYAWPAYSYIIVSVQNGTANELLSWSLDNQHQFQPETIYPINLAT
>NC_019676.1|WP_015111372.1|537464_538637_+|molybdopterin-synthase-adenylyltransferase-MoeB
MLNPNLEEIQLTKDDYERYSRHLILPEVGVDGQKRLKSASVLCIGTGGLGAPLLLYLAAAGVGRIGIVDFDVVDTSNLQRQVIHGTSWVGKPKIESAKNRIHEINPHCQVDLYETRLSSENALDIIRPYDIVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGMIGVIQATETVKIILGNGNTLSGRLLLYNALEMKFRELKLRPNPIRPVIEKLIDYEQFCGITQAKAEEAKQQQEIAEMTVTELKALLDSGAKDFVLLDVRNPHEYDIANIPGSVLVPLPDIENGNGVAKVKEVLNGHRLIAHCKMGGRSAKALSILKDAGITGTNVKGGITAWSREVDPSVPEY
>NC_019676.1|WP_015111373.1|538744_539935_+|MFS-transporter
MSIARSPSQVLWLQVFALAAVQGSISLAWLIYNLYLPQLLTQFGFSASLAAGLLVIENALSAVLEPVMGGLSDKSQRWVGSRFPFISVGVILSSTLFIAIPCIVTFVQPTVIWRSLLPITLVAWALAMTIFRSPAMVLLGKYATPPQLPSAVSVVTCVGGMIGAFRPIANQYILSFGAIFAFAVASFVMLAAAGILRWVNPPETPNFQHDTKVGKFPYPELSLMFATGLGVAWGTRLMMNSLTQLLKVQFHTNNIDMLLVYIGLAIAISTLPAGVLATKIGNCQAMLLGVGTTIISILAIAFTGAILPLIVLLVAGFSTIINGAIPLALGLISPKWAGLGIGTYFGGFALAMSLFGWLFPQVPKMTPVISALFCGLAFLLVGICLIIATVQINAKA
>NC_019676.1|WP_015111374.1|539931_541578_-|glycosyltransferase-family-39-protein
MQIAQKWLTSKANQSVLILLVGGLLFRAIIAFWLYPTFDEAYYYLYSLHLNWSYFDHPAIVAFTTGFGTWLTGDVSQFTIRLGAILCHTGSLIFLYLTSQKIFSPKAAYFTLAIATICPIFQIGFGILSLPDSPLMFFWSASLYCAVTEFLRQPLQDESYSSNSYTPSYRLAILGILVGLACNSKYHGFILGLGLLGFCLTSPAHRVVVRSPWAWFSLGLFIITISPIVFWNMQHNWVSFSFQSARAVPKTGYNLLNVLLVYLAQVAYLFPTLGFPLWRVSLQPILRKIKQIFTQKPITYKDNLKTEKLLILWVSLPLILGFTFIGGYRQILPAWTMPGFWGITLLLGQQAVIWEQKSRLWVRRWLLGSGIMVASIVIILLLQLTLGIFQKPSQYAVLGGFLPVQNDPSTELIDIQQLRRTFSESPILKTALQNSSFIFTNRYYLGGPIAMSLEPVAQIPITCFDIGNDNRGFAFWSRAEQWLGKDALYITIAPFNLREDLMASYRNHFRSVEEIEQIVIRRGGVAVNIVYVYQAKTLLKPYPRSYGV
>NC_019676.1|WP_015111375.1|541694_542438_-|ABC-transporter-ATP-binding-protein
MSGSVDHTAPILEVNNVHAGYIQDVDILQGVNFRVDAGELVTVIGPNGAGKSTLAKTIFGLLTPHTGTITFKGENISGLKSNQIVKKGLSYVPQIANVFPSLSVEENLEMGAFVSNAPLKPVKDKIFAMFPKLSDRRRQRAGTLSGGERQMLAMGKALMLEPSLLLLDEPSAALSPILVTQVFAQIKQINQSGTAIVLVEQNARKALEMAHRGYVLESGRDAISGPGQELLTDPKVGELYLGAGKGH
>NC_019676.1|WP_015111376.1|548406_549285_+|glycine--tRNA-ligase-subunit-alpha
MNFQSVISSLHHFWRDFGCLIGQPYDIEKGAGTKNPHTFLRALGPEPWAVAYVEPCRRPTDGRYGENPNRFQHYYQYQVLIKPSPDNIQEIYLDSLRALGIRPEDHDIRFVEDNWEDATVGAWGTGWEVWLDGMEITQFTYFQQCGGIDCRPVSIEITYGLERLTMYLQQVEAFTKLQWTDNITYGDVFLQNEIEQSTYNFEASNPEMLLTLFNLYEQEANQLTERGLVLPSLDYVMKCSHTFNLLDARGVISVTERTRYIAKIRHLARKVAQLYVEQREKLGYPLLKKTAV
>NC_019676.1|WP_015111377.1|549543_550707_-|FAD-dependent-oxidoreductase
MQQDSLKDLVLVGGGHSHAIVLRMFAMKPLQGVRLTLITPAPNTPYSGMLPGHIAGLYSYEQCHINLPRLTRFAHAQLYIDSMVNLDLDNHKVICANRPAVNFDVLSIDIGSTPATKDVLGAAEYAIPAKPVAELLENWYKLLQNINNNPQQQWNIVIVGGGAGGVELALSMQTHIQRILIANQQPIQNLEIHLFNRHQEILPYHHSLVQRQVKQILTSRDIFLHLGESVSQIAQINEESLAVKCESGLAVECQKVFWVTQASAPDWLIATGLGTDEQGFILVNDTLQSQTHPQVFAAGDIATMVNYPRPKAGVFAVRQGKPLFENLRRIILGKPLKPYLPQQQYLSLIGTGDKRAIATKGAFTLPAHPLIWRWKDWIDRRFMEQFR
>NC_019676.1|WP_015111378.1|550850_551357_+|N-acetyltransferase
MTIRHATETDLPAIVAIYNTAIPSRLATADLKPVSVESRRLWFHGRSPNFRPLWVIEQEGVIAGWLSFQSFYGRPAYNSTAEISIYIAPAFHHCGLGRQLLTQAINESPNLGLKTLLGFIFAHNHPSLKLFETLGFQRWGHLPQVADLDGVERDLIIMGLRIGEKPKP

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Crispr_ID: NC_019676_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_3

2044433-2044519

Orphan

Consensus_repeat	Method
TTTCATTTGCAGTTTGTCTTCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_3

>merge|NC_019676|3|2044433-2044519|CRISPRCasFinder
TTTCATTTGCAGTTTGTCTTCATCTTCAGGCATTTCTTGGCGTTGAATATTACCTGAGATTGATTTCATTTGCAGTTCGTCTTCATC

>NC_019676|3|3|2044433-2044519|CRISPRCasFinder
TTTCATTTGCAGTTTGTCTTCATC	TTCAGGCATTTCTTGGCGTTGAATATTACCTGAGATTGA
TTTCATTTGCAGTTCGTCTTCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015112635.1\|2049372_2050539_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019676.1\|WP_044499856.1\|2054670_2055162_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019676.1\|WP_015112632.1\|2044998_2046966_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NC_019676.1\|WP_015112637.1\|2051605_2053276_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NC_019676.1\|WP_015112631.1\|2044544_2044883_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112625.1\|2037143_2037539_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_019676.1\|WP_015112627.1\|2039888_2041208_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224938
NC_019676.1\|WP_015112638.1\|2053531_2054017_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019676.1\|WP_015112639.1\|2054073_2054541_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019676.1\|WP_015112634.1\|2048564_2049248_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019676.1\|WP_157373998.1\|2043177_2043345_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112620.1\|2031034_2031670_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237191
NC_019676.1\|WP_015112622.1\|2032435_2032870_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NC_019676.1\|WP_015112623.1\|2033078_2035721_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_019676.1\|WP_015112621.1\|2031952_2032162_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112624.1\|2035968_2037039_+\|LOG-family-protein	unknown	unknown	gnl\|CDD\|224527
NC_019676.1\|WP_015112629.1\|2041331_2043053_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_019676.1\|WP_015112636.1\|2050991_2051534_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NC_019676.1\|WP_015112633.1\|2047041_2048307_-\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NC_019676.1\|WP_015112626.1\|2037635_2039462_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015112635.1\|2049372_2050539_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.65202e-42
NC_019676.1\|WP_015112632.1\|2044998_2046966_-\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	7.75979e-36
NC_019676.1\|WP_015112637.1\|2051605_2053276_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.09829e-49
NC_019676.1\|WP_044499856.1\|2054670_2055162_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.17265e-27
NC_019676.1\|WP_015112625.1\|2037143_2037539_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00128537
NC_019676.1\|WP_015112627.1\|2039888_2041208_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	5.87753e-69
NC_019676.1\|WP_015112638.1\|2053531_2054017_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.8715e-22
NC_019676.1\|WP_015112639.1\|2054073_2054541_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.47687e-18
NC_019676.1\|WP_015112634.1\|2048564_2049248_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44844e-63
NC_019676.1\|WP_015112620.1\|2031034_2031670_+\|hypothetical-protein	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	0.00744714
NC_019676.1\|WP_015112622.1\|2032435_2032870_+\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	4.31732e-81
NC_019676.1\|WP_015112623.1\|2033078_2035721_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_019676.1\|WP_015112624.1\|2035968_2037039_+\|LOG-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.10637e-59
NC_019676.1\|WP_015112629.1\|2041331_2043053_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	8.85396e-37
NC_019676.1\|WP_015112636.1\|2050991_2051534_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	1.32062e-19
NC_019676.1\|WP_015112633.1\|2047041_2048307_-\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	1.01713e-39
NC_019676.1\|WP_015112626.1\|2037635_2039462_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	9.96445e-27

>NC_019676.1|WP_157373998.1|2043177_2043345_-|hypothetical-protein
MGNNSINSSDRAIIVFHPNQQPELLQGSDRLLNLPEIDITLSVEQVFSWLKMQSM
>NC_019676.1|WP_015112629.1|2041331_2043053_-|DUF4157-domain-containing-protein
MYKRQHRTGKTPANHSDVPANQFAPRRFVIQPQTEESEQSPADLQAKSTSTETSGNNFANIPLFPPGYQPPPAPRIQMKLSIGEPGDKYEQEADRLAADVVERINSPETPPVQPQLQPEEELRKKSLIQRLSNADETSATPDLEASIQRSKGGGQSLAETIKQPMEQAFGADFSGVKIHTDAQSDQMNQSIQAKAFTTGRDIFFRQGTYDPGSRGGQELIAHELTHVVQQTGSGKVQKSADAEILSVSRAEKQIQRITDDEEGEVAKQYKRMWRFVQQAIERTVIIQGYKDYEDYKEQVTLEQFKADCEIAAKAENKLSNNDKNVMANDIIVPQSYYHVTKSFNEINGLVTTGAATCTGLAMSASNADGETIYALTHIDANNDIKGVIDGMINDMTTQIGNIVGNINAYIASAGVGSKGQLKDTPKDVVKHLESKPVTINFASGLQQIRIGGNSETGDLVRVSESVDIIHRKEGNKNVDGLIQQVTALPKMKGGHDWEKLEENQDYTSGKHDPMEESIKQVLERALQLQEETKNDESQQEKFQTLKKVVKNEKDWYGKYVFGRKLLIWAGNEN
>NC_019676.1|WP_015112627.1|2039888_2041208_+|D-alanyl-D-alanine-carboxypeptidase
MLELLSSGLVSLWLEMAGVEIKPSDALEALAGQVNPGLVLASDPNPTGVNTVQQYLQGLIKSKLVAQNLAESQGIWLQSGPILMANHEGTTPLPAASLTKIATSLVSLKTWGPDHQFETLIGTTGPVVNGVLQGDLVIAGGGDPMFVWEEAIALGNTLNKMGIKQIKGNLLITGNFAMNFQRHPLLAGQMVKQALNHKVWTRPANYIYSIMPKGTPKPEVVITGAVKAVPQPPQQTLLVRHKSLPLRQLLKEMNVYSNNEMAEMLAESVGGASVVQSTAAYMARVPESEIQLINGSGLGQENRISPRAVCAMLMAIQQQASAHDLNLADLFPMSGFDHRGTLHSRHMPVGTVMKTGTLRDVSALAGVVPTRDRGLVWFAILNRGPFVSNYRLEQDKLLQNLVKQLEVVPAVPTAITPHSPANSLPELGATSRNEILFRG
>NC_019676.1|WP_015112626.1|2037635_2039462_-|HEAT-repeat-domain-containing-protein
MSLLTDALDRIETWLVKNQPEFALSLAPGLTRQEIDAIVENFPYRLPEELYEFYGWHNGCQYGYIVPKFDNFFSLQEALKWYADFLSWGFDWNPHWLTILDFNGDYRYAVVTGEDSAPIWFIDPEGCIKEIRWDSLTDLMLATAECYETGAYYFDDEGYIKEDKQKVAEIHRKYNYRGRETSTTNESYNPEPPTVASEVDLSNPNALEELIQALQAAPLSPDAGMLQAMAANTLDNLANLGLVNQVGAEPLVIGLQNILYDNAGHALAAKKLGELGDIRAVEPLLQALSHPSGKVRTNAIESLVKLGDSRAVEPLIQCLQDSDFFVRTKAAWALAEFGDTKAIEPLIEALSHENQSTACGAIASALGKFGDVRAIEPLIAVFRSNGSFLRDAFSFPHVQLAVVHALRLIDDSRTTDILVEFLRDREGLLQAINRDWLRSEQATHQVIETLLTRQHPDLLEILTQLLQASESRIQTNTLSAIAKITNPLMIDLLILTLANENNWLRKSAIYYLGERVDTRAIEPMISILQDVNADVRITAVYALAKMNDERVVKALIEMLKDEDFRVRGAAALNLGNLGNLRAVEPLNQCLEDENSIVRKIVQQALNKL
>NC_019676.1|WP_015112625.1|2037143_2037539_+|nuclear-transport-factor-2-family-protein
MTLRDRVQELLDFQKTNPTTAQIYEEFYDENVVVQENLQPPRVGRALSIERQKQMNANVKEVHDFKIGAVLVDGDRSVIQMRIEVTTVDGYRILIEELGLQTWKDGKIIHEQYFYDPVNIQGKTKEINEIH
>NC_019676.1|WP_015112624.1|2035968_2037039_+|LOG-family-protein
MTSSASFDTLESLQSDIADLIDRLPTLKHRQFIQQALATVIRLADSDIDRLDWKILSSALADMELGFELFYNYRHVRKVTIFGSARLSPETPEYQMALEFGRAVTQLGFMVMTGGGGGIMQAGHEGAGRENSFGLNIQLPFEQQANPIIEGDPKLIHFKYFFTRKLFLLKESDAVALFPGGFGTQDEAFECMTLSQTGKFGPVPLVLIDHPGGDYWRSWSDYIDRQLVQKGLVSPEDPSLYMVTDNLEVACNAITDFYKVYHSSRYVSNQLVIRLNCDLSNAEVEQLNADFSDILVKGKIEKSQALPQEAQDETLELPRLILHFNQRDLGRLYQMIATINQMGRPSQQEIAHPERK
>NC_019676.1|WP_015112623.1|2033078_2035721_+|ATP-dependent-chaperone-ClpB
MQPTDPNKFTDKAWDAIVKSQDIVRGYNQQQLDVEHLIIALLEEPTSLAIRILVRAEIDPIRLQQQLEAYTQRQPKVANNDQLYLGRTLDVLLDHAEEARVKMKDTYISVEHILLGFAEDERVGRRILKGFNADSGTLEAAIKAVRGSQKVTDQNPESRYEALQKFGRDLTEQAKAGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIINGDVPESLKNRQLISLDIGSLIAGAKYRGEFEDRLKAVLKEVIDSNGQIVLFIDELHTVVGTGSNQQGAMDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVFVDQPNVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYISDRFLPDKAIDLVDEAAAQLKMEITSKPSELETIDRRLMQLEMEKLSLAGEEKVPTQTRERLQRIEEEIDTLKVKQQEFNEQWQGEKQLLEAISVLKKEEEALRVQIDQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQVTEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQHEAVEAVAAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAQFLFDSDDALVRLDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNTVIVMTSNIGSEHILDVSGDDSKYDMMRNRVTDALRSHFRPEFLNRVDDIILFHTLSRSEMRHIIRIQLKRVENLLKEQKISFEITQAACDYLVEMGYDPIYGARPLKRAIQREVENPIATKLLENTFIAGDTILIDKDEDNLTFNKKVTVKVSVPQVIT
>NC_019676.1|WP_015112622.1|2032435_2032870_+|lactoylglutathione-lyase
MRLLHTMLRVGNLEESLKFYCDLLGMKLLRRKDYPGGEFTLAFVGYGDESDHAVIELTYNWGVEKYELGNAYGHIALGVDDIYTTCEAIKNRGGKVVREPGPMKHGSTVIAFVEDPDGYKIELIQLGSQGSAVKQTSQDQLVSP
>NC_019676.1|WP_015112621.1|2031952_2032162_+|hypothetical-protein
MRSHLVNLIQVAPNIVLPTKISTKTIAGTVFDALINLMDSLRNFNKARTAIQHRDMRKYSWERLRLNFY
>NC_019676.1|WP_015112620.1|2031034_2031670_+|hypothetical-protein
MTNSGDRETHNNETRQESYTDNYGNTHTNLTRTSETVNNNPNNVNSYRNGYANGREIERNYQQANLAARDNDNASRGLLLGILLTSLAGLIVGAFWYFNQPRETVVNETRPIVNPSPNNNLPTPQPQQTTIIERTREVPVVVPQQQVPSVNVPSPPDINITVPPQQPVTSGTQTTPPKDNPAPVDNSPANKTSNTDSSTTGDTSTDKSNSR
>NC_019676.1|WP_015112631.1|2044544_2044883_-|hypothetical-protein
MYTRQYKTKKTSTNSAEILTSNQFAPRRFVAQPQAEEITNNQTPDLQTQSDKKKQSGNNLRNISVFPSNVTQPQPPRIQMKLTIGQAGDKYEQEADRLAADVVQRINAPESE
>NC_019676.1|WP_015112632.1|2044998_2046966_-|ATP-binding-protein
MENKLLTQNYEWQSANYDYLINALNIVRQALLAEEPKENRNPHFPNLSPPALHTLCQIFGLSEFESHILLLCVGMELDANWGILCANAQGSLGKPYPTFMLAKASLPQPHCNALIPTAPLRKWQLIQISEGSVLNLSHLRVDERILHYLLGLNHVDERLQSIVQPVVIPDSEIVPSHQQLVEQLATTWIETQTALPIIQLCGDEIASKKAIASTACKLLNLNLHQMSAGAITNLRQNEMNDLLRLWERESMLNNSVLLLDCDEVDYTEPAKENAIARLITSITSPLIITSLERKRSLQRSLIAIDVHKPNITEQQIIWQNTLGEAATSLNGHVDKLVSHFSLNASTIQTVCAEAKGKLKVKSQKAKEVEELSTLLWDTCRFQARSRLDELAQPMETSATWDDLVLPEAQRQVLRDITAHVRQRTKVYEKWGFGNKGGRGLGISALFAGASGTGKTMAAEVIAHELRLDLYRIDLSQVVSKYIGETEKNLRRVFDAAEAGGAILLFDEADALFGKRSEVKDSHDRHANIEVGYLLQRMESYRGLAILTTNLKASLDQAFLRRIRFVVQFPFPDITQRTEIWQRVFPRQTPTQDLDASKLAKLNVSGGNIRNIALNAAFLAADSGDAVEMKHLLQAAKSEYTKLERQLTDAEVKGWV
>NC_019676.1|WP_015112633.1|2047041_2048307_-|DUF4255-domain-containing-protein
MSNYLAIATITATLQRTLQVNVQVDVDGARVTTVRPDRLNNATPEAGVNIYLYDVLLNSAWRSADLRQRHSEDKYIKRSQTGLDLYYLITCYGNDVELEPQRLMGSIVSTLNSKSIITQEMIRETVADSTFTFLADSNLAEQVEAITISPVDMNIEEISKIWTVFFQTPYSLSLGYKASVILIDSGDIPKKPLPVRNIQRHITPYQPAIAHIKVAEELAKLWKTQSTATPLILASSTLLIQGNNLNAEITQIRLGKVTIIPQTVTEKQITLDLSRIPTESLRAGVQSLQVIHPQQRVNSNVVPILLRPTIQEVTVSNLHGRGNDLRSADVNVIVNFTIEKTQQVTLVLTELSLTQFTGYSYEQTKHRRNNSNSITFAITDCLPGNYLVRLVVDGAESLLSVDTDPHSPTYESYIGPVIAIA
>NC_019676.1|WP_015112634.1|2048564_2049248_-|response-regulator-transcription-factor
MNTKKEVISVLLVDDEPHFRKGIRTLLNFYTNSSGLGLNVVGEAASVEQAVKLTAEQHPALILLDLELPPEDGIMALQRLGELSYNGKVLILSAHQQDEWIFRAMQAGACGYVFKDQLATQLCEAITTVINHQVYLPPDVATAFFRLFHYYTGHSLNSNHSSIHLTEREQEVLNWLVQGASNEQIAGNLYITVATVKAHLTAIFDKLSVTSRTQAIVKALKLGLVSP
>NC_019676.1|WP_015112635.1|2049372_2050539_-|HAMP-domain-containing-histidine-kinase
MRVATQKLTSQFPLPLLVNNSESKLPESDFNQICQLIIQQLTALLPIVAIWIVYHDLAKGNRHLVAEYLSEQSWQTNNFVSVNSNLDFASLRAETWWREDFPVLKITELAASDFYHSYVCRISKQSVKIAEYLLICTSKSLSDEQQNLLLSNAQILSNYLAMYRERSRQQQEIAALSQALGQAEHQLRNPLALINLYAENLRLALPQGDLQEQASLIRQTVDELSAKLTDLLYRGQQANLNFKQHNLQTIIGECIKTLQHLLKEKELKINYPEKPVYVTVDNWQMKQVFDNLLSNAIHFSHRGGTITCNWYAYSNEVLIEIGDRGSGIAPEELKQIFKPYYSRRLGGTGLGLAIAQKIILAHQGNLWAENLPEGGAQFSFTLPYKRQK
>NC_019676.1|WP_015112636.1|2050991_2051534_+|DUF4255-domain-containing-protein
MIPAATQTLAKILAGGISLLSTEQIDFSHPGVEQNINPRLNLYCYNIQESVEKQQSNCQQPVDKRKLVLFTPRWFDVSFLVSAWDFTSLGEQRLLSEALILLLHHHSLREEVLAPALRGHGELAMTVSAIHPLDAAALWNALGVPLRPALYVTLTIPLNLESYSVTESSSVDCSKPTQKV
>NC_019676.1|WP_015112637.1|2051605_2053276_+|phage-tail-sheath-family-protein
MPRLDYFAPGVYVEEVDRGSRPIEGVSTNIAGFIGFTEDVRGDAELFKPMLVTSWNEYLEYYAKQGSDGFTDFDAYLPFAVNGWFLNGGGRCWVASIGTKLPGSQPPPAEETALKLRTTGNRPSLSFALKPAEDDDNSGAEGRINVSVTESQPRPPESPEAEPPANTGEFFKVIISRNGEILEEYDNLSMNPQVEAPLGAYAVTALQESQFVTVADLETPGQPLSRRPANGTYEVSPPPLVSTPDRFPRDVQGVRDDRTGMQGIFEIDEVTMIAFPDLMRAYQNGILDLDQVHGIMEAMVSMCENTAPNRMVVLDPPPCKGGGAPVPPTQVKPQHIAQWLSAFNRRSQFAALYYPWIKVPNPRNGGRPILIPPAGHMLGVWCRTDETRGVYKAPANDTPRGVIGLAYETNLREQELLNPLGINCIRTFPNRGIRIWGARTLVEPDNLQWRYISVRRLMSYIEKSVELGTQWVVFEPNDQDLWARVTRTVSNFLERLWREGALFGASAAEAFYVKCDASINTHETMMLGRLYIEVGVCPVRPAEFVIFRFSQWSPNQ
>NC_019676.1|WP_015112638.1|2053531_2054017_+|phage-tail-protein
MPELKPIAASNFYFEIDSMTDMAFSKIGGVKFEAKVQGQDKPLMSTKGGNTVRQINSAGFEGLFNIEVTTLMSGDSDSTSKKMYDWFKKCMPKTEKGEGKWAEGKKTGSIVAYDTDGNEVMRWDLKEAWPSQYKIGDFDVSGNGYVEETYTLTCENINRKK
>NC_019676.1|WP_015112639.1|2054073_2054541_+|phage-tail-protein
MAEFVSNAKFYFEADGLTDILIQKISGMQMKMVVAGGDAPIGVTKDGKTQTNATIGSVECSEITVECVATADSKQLLDWYNKCHAEALSGGKAEGRSSRKLAKLAIYDGDGNEKVQYEFTDIFPTSYGTGDFTAGSGDLLTETVTIGFTYFERKK
>NC_019676.1|WP_044499856.1|2054670_2055162_+|phage-tail-protein
MTDFPEILTNSRFYLELKLTGSQEPVDGYFMECQGFKVNQQVIEVAEVTPQTWGKKGNTSGRVIRTKIPGNISYSNIVLRRGLTISMTMWNWLAAVQESKWGDEKRDGSLVIYNQAAEEKFRLAFKNAWPASYKINDVNAAGSEHEIEEIEVVVEELKRVKVA

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Crispr_ID: NC_019676_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_4

2133534-2133831

Orphan

Consensus_repeat	Method
TCTGTCAACTTTCCAACTTGAC	CRT

4 spacers

The CRISPR arrays of NC_019676_4

>merge|NC_019676|4|2133534-2133831|CRT
TCTGCCAACTTTCTAACTTAACAGCGTTGTATCTCTCTAATAATCAACTCAGTAGTCTGCCATCAGAAATCTGTCAACTTTCCAACTTGACAGAACTGTACCTGAATGGAAATCAACTCAGTAGTCTGCCACCAGAACTCTGTCAGCTCTCCAACTTGAAGTTGTTAGACCTCTCTAACAATCAACTGAGCCACTTACCATCAGAAATCCGTCAACTTTCCAACTTGACGGAACTGTACCTGAATGGAAATCAACTCAGCACTCTGCCACCAGAACTCTGTCAACTTTCCAACTTGAC

>NC_019676|4|1|2133534-2133831|CRT
TCTGCCAACTTTCTAACTTAAC	AGCGTTGTATCTCTCTAATAATCAACTCAGTAGTCTGCCATCAGAAA
TCTGTCAACTTTCCAACTTGAC	AGAACTGTACCTGAATGGAAATCAACTCAGTAGTCTGCCACCAGAAC
TCTGTCAGCTCTCCAACTTGAA	GTTGTTAGACCTCTCTAACAATCAACTGAGCCACTTACCATCAGAAA
TCCGTCAACTTTCCAACTTGAC	GGAACTGTACCTGAATGGAAATCAACTCAGCACTCTGCCACCAGAAC
TCTGTCAACTTTCCAACTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_172641481.1\|2132040_2132250_+\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NC_019676.1\|WP_015112708.1\|2134404_2137530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_019676.1\|WP_083889693.1\|2124197_2125322_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225829
NC_019676.1\|WP_015112710.1\|2139409_2140393_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|234850
NC_019676.1\|WP_015112714.1\|2143129_2145565_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_019676.1\|WP_015112700.1\|2126215_2126788_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_019676.1\|WP_015112697.1\|2122723_2123881_-\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225825
NC_019676.1\|WP_015112696.1\|2121630_2122716_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NC_019676.1\|WP_015112699.1\|2125404_2126187_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NC_019676.1\|WP_015112707.1\|2133871_2134204_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NC_019676.1\|WP_015112702.1\|2127723_2131287_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NC_019676.1\|WP_015112703.1\|2131588_2131933_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112716.1\|2148117_2149014_+\|bile-acid:sodium-symporter-family-protein	unknown	unknown	gnl\|CDD\|223462
NC_019676.1\|WP_015112715.1\|2145864_2147868_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NC_019676.1\|WP_015112712.1\|2142122_2142548_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112709.1\|2137843_2139394_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277318
NC_019676.1\|WP_015112701.1\|2127094_2127406_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112711.1\|2140877_2141543_+\|phytochelatin-synthase	unknown	unknown	gnl\|CDD\|368247
NC_019676.1\|WP_015112713.1\|2142779_2143049_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183801
NC_019676.1\|WP_015112705.1\|2132246_2132669_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350263

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_172641481.1\|2132040_2132250_+\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	3.18444e-06
NC_019676.1\|WP_015112696.1\|2121630_2122716_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	9.39571e-45
NC_019676.1\|WP_083889693.1\|2124197_2125322_+\|transcriptional-regulator	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	2.76038e-119
NC_019676.1\|WP_015112710.1\|2139409_2140393_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|234850	PRK00861, PRK00861, putative lipid kinase; Reviewed.	5.46136e-178
NC_019676.1\|WP_015112714.1\|2143129_2145565_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_019676.1\|WP_015112700.1\|2126215_2126788_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.7589e-54
NC_019676.1\|WP_015112697.1\|2122723_2123881_-\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	3.2895e-88
NC_019676.1\|WP_015112708.1\|2134404_2137530_-\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	9.06904e-07
NC_019676.1\|WP_015112699.1\|2125404_2126187_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	3.23212e-159
NC_019676.1\|WP_015112707.1\|2133871_2134204_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	9.8162e-35
NC_019676.1\|WP_015112702.1\|2127723_2131287_-\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NC_019676.1\|WP_015112716.1\|2148117_2149014_+\|bile-acid:sodium-symporter-family-protein	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	5.61407e-70
NC_019676.1\|WP_015112715.1\|2145864_2147868_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NC_019676.1\|WP_015112709.1\|2137843_2139394_-\|metallophosphoesterase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	0.000122205
NC_019676.1\|WP_015112711.1\|2140877_2141543_+\|phytochelatin-synthase	gnl\|CDD\|368247	pfam05023, Phytochelatin, Phytochelatin synthase. Phytochelatin synthase is the enzyme responsible for the synthesis of heavy-metal-binding peptides (phytochelatins) from glutathione and related thiols. The crystal structure of a member of this family shows it to possess a papain fold. The enzyme catalyzes the deglycination of a GSH donor molecule. The enzyme contains a catalytic triad of cysteine, histidine and aspartate residues.	1.26049e-11
NC_019676.1\|WP_015112713.1\|2142779_2143049_-\|YciI-family-protein	gnl\|CDD\|183801	PRK12864, PRK12864, YciI-like protein; Reviewed.	1.94206e-60
NC_019676.1\|WP_015112705.1\|2132246_2132669_+\|PIN-domain-containing-protein	gnl\|CDD\|350263	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins. Mycobacterium tuberculosis VapC26 cleaves 23S rRNA in the Sarcin-Ricin Loop, it is inhibited by the cognate VapB26 antitoxin. This subfamily belongs to the VapC (virulence-associated protein C)-like nuclease family of the PIN domain-like superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.75478e-10

>NC_019676.1|WP_015112705.1|2132246_2132669_+|PIN-domain-containing-protein
MKHQVIIDTGPLVAFINRREHLHDWVINTLATIEQPLLTCEAVIVETCFLLRNIYGGQEAVMSLLSTGNILIPIHLSESAAEIKELLRQYQSVPMSLADACLVRMTQLYPKSELLTFDSDFRIYRKNRNQLISVIMPEDA
>NC_019676.1|WP_172641481.1|2132040_2132250_+|DUF2281-domain-containing-protein
MRSLPPQQQQEVLDFIEFLQNKIAGQNTNQEHQEPISFLSAAQQLAGCVDGGPGDLATNKQYLEGLGSE
>NC_019676.1|WP_015112703.1|2131588_2131933_+|hypothetical-protein
MSVIKRPIKPATYISFLYIYETTWGKTGDICLIRESVANASTTKFIGHKIRLVVPKRLERDRVANFPVVKVAGNVGDGHPKDHPYEWEAYEGVDLEIAIAALRPWGFKLIENTD
>NC_019676.1|WP_015112702.1|2127723_2131287_-|methionine-synthase
MTHPFLERLRSPDSPVLVFDGAMGTNLQTQNLTAEDFGGAQYEGCNEYLVHTKPEAVAKVHRDFLAAGADVIETDTFGSTSIVLAEYDLADQAYYLSKKAAELAKSVAAEFSTPEKPRFVAGSIGPTTKLPTLGHIDFDTMKASFAEQAEALIDGGVDLLLVETCQDVLQIKAALNGIEEAFAKKGDRLPVMVSVTMESMGTMLVGTEISAVVTILAPYNIDILGLNCATGPDLMKPHIKYLAEHSPFVVSCIPNAGLPENVGGQAHYRLTPLELRMSLMHFVEDLGVQVIGGCCGTRPEHIQQLAEITKELKPKVRQPSLEPAAASIYTTQPYTQDNSFLIVGERLNASGSKKCRDLLNAEDWDGLVSMARAQVKEGAHILDVNVDYVGRDGVRDMHELVSRIVNNVTLPLMLDSTEWEKMEAGLKVAGGKCLLNSTNYEDGESRFLKVLELAKKYGAGVVIGTIDEEGMARTAERKFQIAQRAYRQAVEYGIPPTEIFFDTLALPISTGIEEDRENGKATIAAIRRIRQELPGCHVILGVSNISFGLSPASRIVLNSVFLHEAMAAGMDAAIVSANKILPLSKIEPQHQEICRHLIYDERKFEGNVCVYDPLGELTTVFAGVSAKRDKGVDENLPIEEILKRHIIDGERIGLEKHLTKALETYKPLEIINTFLLDGMKVVGELFGSGQMQLPFVLQSAETMKTAVAYLEPFMEKSEAGNNAKGTMIIATVKGDVHDIGKNLVDIILSNNGYKVINLGIKQPVENIIESYNQNKADCIAMSGLLVKSTAFMKENLEIFNEKGITVPVILGGAALTPKFVHDDCQKAYQGKVIYGKDAFSDLHFMDKLMPAKAAHNWDDLQGFLDEVGDEPETTQHSTLITQHPARAERPATALSAAMPAGLYSTEIDTRRSEAVAVDIERPTPPFWGTQLLQPTDIPWEEIFWHLDLQALVAGQWQYRKPKEQSKEEYQAFLAEKVYPILETWKQRIIEENLLHPQVIYGYFPCQAEGNTLYVYETNNSAQVKASFEFPRQKSLRRLSIADFFAPKESGIIDVFPMQAVTVGEIATEFAQKLFADNQYTDYLYFHGLAVQVAEALAEWTHARIRRELGFVAEEPDNIRDILAQRYRGSRYSFGYPACPNIQDQYKQLDLLETGRINLYMDESEQLYPEQSTTAIIAYHPVAKYFSA
>NC_019676.1|WP_015112701.1|2127094_2127406_-|hypothetical-protein
MSEKFEEKSFPEEPEKFYPTQHLKVYQTSDAGQLLICECRNCLTALSIDVVFLTPQNSKPKPKNKPDTQQDDVMKCPNCGRIPIFLEGCVVQSINQLPSSPWK
>NC_019676.1|WP_015112700.1|2126215_2126788_-|signal-peptidase-I
MIPQETDAKEATASSKIWRSWRENLTLVAIALLLAVLIRTFVAEPRYIPSDSMVPTLYEGDRLVIEKISYHFQPPVTGDIVVFQAPAELQRRGYPKDQAFIKRVIGTPGEIIKVADGKVYLNNQPLQEDYIAEPPNQPFPAVKVPADELFVMGDNRNDSNDSRYWGFLPRQNIIGRAVFRFWPLNRIGFI
>NC_019676.1|WP_015112699.1|2125404_2126187_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MPVTTQQLIQWKQQGRAIAALTAWDYAIAQLIDAAGVDLILVGDSMAVVLGYETTLPITLDEMLYHAKAVRRGVKRALVVVDLPFLTYQESVAQAMNSAGRILKETGAQAVKLEGGYPAMVETIARLVQVGIPVMGHVGLTPQSVHQLGLRQQGKTEAQAERILNEAIALEQAGVFAIVLEHIPADLARNITEKLSIPTIGIGAGSYCDGQVLVTSDILGLSAKQPPFAKTYTNLRETITQAVQDYAVEVRERKFPNSEQ
>NC_019676.1|WP_083889693.1|2124197_2125322_+|transcriptional-regulator
MVVLCRKRTSFLITSILLGLITLPNMGFVLMTSSVKAQVSGNTSPSNTPDIKPSELTPSYPASAPPPQVKPLPDERTVEERSIETDYRVSNLLKDFKGNLWVGSWRGLSRIDPKTGKILARVNLPNIAIGALAQDKVGRLWVGTYEGLMRVDPRTNEITAQNLFLPSKRVLSMLIDKRGYLWVGTDSGLALISPDQGLIMTTVKNLPGVSANTLTLDAEGQLWVGTLDGLVRVNTANAYIMKRIDGLPGTTVQTLAISPEGLIWAGMANNLLVIDPKTDKVLRSVTALRGRNVTAVNFAQDGSVWVGTNNGLLRLNPHTGALLDQVAGLPSSRVLALVPDIGNKLWIGTSEGLAWLMPKMNGAKPHLAFSRAVK
>NC_019676.1|WP_015112697.1|2122723_2123881_-|FIST-C-terminal-domain-containing-protein
MFQVVVGHSDDPDSQNAIAEVLQKCQSSLSGLIPQAGILFTAIDFDHALILQYIQDTFPEIELIGGTTNGEISSILEFQQDSLTLMLFATDEVEIKAGVGREASKNPALAAENAIAQAMAKSTSVPQLCLTFPDSLTSNGVLILAGLKQSLGANIPIIGGMAADDYTFEKTYQFFQGEVLSDSVPVLLFSGGLLFSHGVASGWHPISQRSRVTKVDGNIVYEIDGQRALDFYQHYLGEEQFAANYAIHALAVFEDQEHFYMRAPNGYNQQSGSVTFFSDIPEQAVVQITDASRNDILFASEASLKNALTDYPGIEPKAALLISCAARRRILGTFAKQEYQLVKTYLPPALPCCGFYAYGEIAPLINKGQTQFHNKTFVTLLMGTK
>NC_019676.1|WP_015112696.1|2121630_2122716_-|two-component-sensor-histidine-kinase
MDNQDNSIQIQDLAKINRILQKKLERCENERRQLESDIATKEFLLKKVICELESSQTKLQQRSQELENTLDSLHKMQAQMIQGEKMSALGQMVAGIAHEINNPVSFIYGNLSHIQEYTDDLLRLVHLYHHYFPKPPVEIQTEREIIDVEFLEKDMIMVLKSMKIGTERIRDIVLSLRNFSRLDESEFKAVDIHEGIDNTLMILQHRLKYSDQSPEIQVIKVYGDLSPVECYAGELNQVFFNILANAFDALEEFNAQRTAQEIHENPSRITIRTCVVDSQWVKIAIADNGAGIPEAIQTQVFNPFFTTKPVGKGTGMGMAISYQIITEKHHGKLDFVSIPSKGTEFVVQIPLQQSGGRGESV
>NC_019676.1|WP_015112707.1|2133871_2134204_-|thioredoxin
MSTEAHIVDAIQESEFNTLLTQEKILVVDFTATWCGPCRLISPLMEQLAEEYKGRAKVVKVDVDNNKPLFKQYGLRSIPAVLIFKDGDLVEKIVGVSPYEQFSGAVEKLL
>NC_019676.1|WP_015112708.1|2134404_2137530_-|hypothetical-protein
MLQIVDNSLGLHWLGNGLVAITRVQELLTPEQASLVFSGPKFLVSLVAGVLMAFAFQLLLTNFAVAFRISATGDDSSSSDDDESLGTTIRKIENKVGFLALISVTIALFIACFLAVKLSLIESAFLGAIIGIVIWSAYFSIIVWFGSSTVGSLIGSVANTANAGLQALMGTATSALGANLAQKQMVSTAEDITAAVRKELTSGFDVDSIQNTLQTSLSTLPKPQLDFNDIRSQFDKIFSDIDWKSIPDGDLTQNFNRQTFVDLISDRTNFSQADINKIADQLEAAWKQTVTRRNPAQQVIDLLTSASPEELQSDKLGDRLQELVTVGGNGNGSNGGMKQAIQSGLTAALPIVLERVNTSNLDVNKITNQLQKLKDKVQDLDIEDITHQLQETIAKTTKTGDNSSNSNYRQDIEAYIQNSLPWHFNRITIKDEFRDVIYDPQADAATMRRELEGFSQEDFANLLIRRSDISEARVKEIAQQMEEIRQEVLETLQQAEAKDKGQDLRNRIENYLRSTSKEELNNEAVERDFTNLLTELNTDVADLNERLQGFDRDVLQQVLLQRQDFSEDEVNNLLNQLESVQYSVLNQLEEQGKSKTEELRQKVEDYLRNTNKEKLNPEGISRDFSTLLQDPQAGFNLLRQRLSQFDRDSLVKLLTQRQDLNEDEVNQVLDQLEAARDNILQTPQAVADKAKEQYTQTTTKIAEYLRNTNLEELNPEGIREDLEKLLVDPKEGVSAIRDRLSQVDRETLVKLVTQRGDLSEEQVQKIIDQAQDAIQDIIKAPRRLAKRTVQRVVDFEANLEDYLRNANKEELNPDSIKRDLQLLLRDPRAGIGQLSDRFSQVDRSTIVALLSQRDDISEEEVNRIADQIVSARDSIVKQYQQIQQGIKSATDQVTGRIRNYLNSLDRPELNYEEIKHDFAKLFDDPQAGFAALRDRLSHFDRDTLVALISSREDISQEDANRIINQIEAARDNVLQRAERIQQITKERLHSIKHQAKKQAEETKKTVANAAWWLFGTALTSLIASAIAGAIAVTGLTISAIG
>NC_019676.1|WP_015112709.1|2137843_2139394_-|metallophosphoesterase
MKLVSDPAIAKKIQKMNQRVRWEDPLIKRRNIDQTKLVLEDGQANDTEFSFLVVGDSGSGRHGGQNPQRRVAELALPHLDDCRFMLHTGDVIYLVGSSEYYQQNFIQPYKEYLVGGEHPKKIAYDNMTFRVPILPVPGNHDYYDLPIVFNLLSITTLPIRRLLRSRLDMDVGLHGSKTGDAYAKAFLDYLNAFKFPGDLDRHLDTHYTVKTDTGLCLAYQPGQFTRLPNRYYTFRYGGIDFFALDSNTFNNPPPLPETPEGDAERIILEQRRQNFEQEKQQILDKSSQLNPDNPNEAEYLDDLYVKLSQIEELIVDIDKQLAPQQTADTDIEQLEWLKQRLIASWHNSQVRGRVVYFHHPPYVTEATKWEQGQTLAIRTRLREVFNAVAEAVGDLPQDRAVVDLVLNGHAHCLEYLQTYNTGHADSAMNWIVCGGSGFSLRRQRTEGADLVERDKLIARSHLFVGRNGHGSAKRRPYSCLRIDVTGENHPRFIVRPLVAEWYQQEWHNYQIEPFVI
>NC_019676.1|WP_015112710.1|2139409_2140393_-|YegS/Rv2252/BmrU-family-lipid-kinase
MNRSACLIFNPVAGQGNPEQELLEIRSLLEPTIDLDIHFTTEEVDADQLANAAVQRGVNEIIASGGDGTLSAAATAVINTNISFGIISRGTANAFATALGIPDTIDAACQTILQGVTRDIDVAYCNDRPLILLAGIGFEAETVEKANREAKNRFGIIAYILAGIQQLRELQSFDVEIETDEKIIKTTAAAVTVANAAPPTSVLAQGPAGIIYNDGLLDVTIVAPVSKAGAIAATYHLFQSASAGNAAERDDIGYLRANHFKITTDPVQKVVLDGELVGTTPIEVKCVPAGLKVFVPTVEEAELAEKLEGLPNLVIELKNPPAGETAE
>NC_019676.1|WP_015112711.1|2140877_2141543_+|phytochelatin-synthase
MDIDNIGQISKRDLEIIQLHQFQQPIYCCNVTAIAYAFTALGYLTTVDEIFYVTQLPIASVLDDGMTLAETYDTCKIYIERKGLPLSIQMDHFDKPSITLEAFTREVEAAVCNENDVHILNFNTRIAHENPSLEGGHFSLLADYDSKTQEVTIADTNPKRYTRFWKCPIQRMYAACVDKDSSSNRSRGMIILRRLEKLNLASNGVAHPAELALNALHAENS
>NC_019676.1|WP_015112712.1|2142122_2142548_-|hypothetical-protein
MQHILKRVFLPGLMAASLTSINLIPAQPAAADDRVLNNAAIGAGASALTGALTGCGSFLNNAATGAAAGAAVNGANGLRTRSDRRVNGRNIIRDAGVGAGAGVVAGAVTGGCRNTLKNGLNGAAAGAAVHILDRRPAKRRR
>NC_019676.1|WP_015112713.1|2142779_2143049_-|YciI-family-protein
MTKYILWGTYCDNVLEKRAPYRQAHLDGLAKQKESGVLITIGPTKDVTKVFGIYEAEDEAAVRQLIESDPYWQNGIWTEYSIKEWIQAV
>NC_019676.1|WP_015112714.1|2143129_2145565_-|phenylalanine--tRNA-ligase-subunit-beta
MRISLNWLRELVEVKLSPEELAHTLTMAGFEVEDIEDRRTWANGVVVGRVLERQPHPNADKLSVCQVDVGAAETLNIVCGAANVRADIYVPVATVGTYLPNIDLKIKPAKLRGVPSQGMICSLKELGLPNDVDGIHIFTGENLPVGSDVRPLLGLNDVILDVTATANRADALSMVGIAREVAALTGGKLSIPQPGEVVVTQNSGKLGLKIGDTQACPAYIGTVIEQVKIAPSPEWLQQRLRAAGVRPISNVVDITNYVLLEWGQPLHAFDKDRLQTVAGNGNLNIGVRFANQGESLKTLDGQTRTLTTQNLLITANDKPVALAGVMGGEETEVYEGSQNLVLEAALFDSVAIRRSSRSVGLRSEASGRYERGVNRAELEIACRRALALINELANGVIVHQEIADTRPDPATWSRFIALRLDRVNEVLGPVDLGEDTGELQANDVVRILTALGCQLTPTEERTWNVAVPPYRYRDLEREIDLIEEIARLYGYDHFCDTLPQKAEAGYLPIDQELVRKLRASFRAEGLTELIQYSLVKPGSDRQIVLSNPLFAEYSALRTDLISGLIDAFQYNLEQGNGSLNGFEIGRIFQQEEDGLREADAIAGILGGDRNLGKWSKGGREQAMTWFEAKGILESVFQQFGLQVEYQPDCRDERLHPGRTASLWIGGNRLGVFGQLHPQLRREKDLPDSVYLFQLDLDALLDALDQDEILIPTFKSYSTYPASDRDIAFFAPVKISVGELEKAITKAGKGLLESVEIFDEYRGENVPQGQRSLAFRLVYRASDRTLTDAEVEPVHNKVREALVEKFGVNLRS
>NC_019676.1|WP_015112715.1|2145864_2147868_+|elongation-factor-G
MIPRTRVRNIGISAHIDSGKTTLSERILFYTGRIHTIEEVRGGGKGATMDFMPEEKLHGITITSAATTCQWHDIQINLIDTPGHVDFTIEVERALRVLDGAVMVLCAVAGVQSQSITVDRQMKRYRVPRLAFINKMDRMGADPFRVVQAIRDRLQLNAVLLQYPIGSEDNFQGVIDLVTMQAHYFEGENGENLVKQPIPDGLVAAAQQAREKLLDSLSLFSEEMTEMLLADQEISSELIWQVIRQATLRLELTPVLLGSAFKNKGVQNLLDAIALYLPSPIDREVVKTAESVSVYPDPDADLVALAFKLTVESFGQLTYTRIYSGTLKSGDTVYNSRTEQRVQIGRLVRMHANKREEVKVAVAGDIVALLGVDCASGDTFCTGETLVSLERMFVPEPVITLAITPKKQEDSERLAKALNRFQREDPTFRLSIDPESGATLISGMGELHLNIYVERIQREYNAEVYVGTPAVAYRETIGQKTQFDYRLKKQSGGVGLYAHITGWIEPTDQPFVFESRVVGGAIPKEYIPACEKGFREAMASGKLSGYPVTGVKVVLDGGSYHPIDSSELAFRSAAHQALENAIAKAKPYILEPIMLVEVETPNEFMGRVQGDISSRRGLLLGSETMQGYSVIRAEVPLVQMFGYSTELRSLTSGMATFSMEFACYRQS
>NC_019676.1|WP_015112716.1|2148117_2149014_+|bile-acid:sodium-symporter-family-protein
MEASFLTTVVLPIALAIIMLGMGLSLTPEDFQRVKKYPKAVTIGLISQLVLLPIIGFAIAKLVPMQPTIAMGLIIIALCPGGVSSNVITFLAKGDVALSVTLTAFSSLITVLTIPVLANLAYQHFIGQTAAIALPIGATIVQIFLMTLLPICLGMGVRQLFPEVALRLEKVTSRLAVAFLAIIILLLIIREWNRLPGFILQVGVGVLLLNSISMLAGFYISKLFNLNPPQQICIAIEVGIQNGTLAIAITAGLLNNPDMAIPAAVYSLFMYVTGLIAINYGRKLAATTPISQPLESKV

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Crispr_ID: NC_019676_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_5

2168386-2168884

Orphan

Consensus_repeat	Method
ATAACACCCTCAANGGTGG	CRT

8 spacers

The CRISPR arrays of NC_019676_5

>merge|NC_019676|5|2168386-2168884|CRT
ATAACACCCTCAACGGCGGTGCTGATGACGATTCATTAGATGTAGATGAATCAACAGGTAATAACATCCTCGATGGTGGCGCAGGTGATGACTTGCTTTCGGCGGTTGGTTCCGAAGGAAATAACACTCTCAACGGCGGTAATGGGGAAGATATATTAAACGTCGATCAGTCCATCGGCAATAACACCCTCAATGGTGGTGCGAATGATGATGATCTGTTTGCGGTTGCGTCTGAGGGCGATAACACCCTCAACGGTGAAGGCGGTAACGATAGATTAATTGCAGATCAATCCAGAGGTAATAACACCCTCGATGGTGGGAATGGGAATGATGAGCTTTACGCCATTGGTGCTTCTGGAAACAACACCCTCAATGGTGGTAATAATCAAGACACGTTAAACGCTGACAATTCCACAGGTAATAATACCCTCAATGGTGATGGGGGTGCTGATTATATTACGGCGATCGCTGCATCTGGTGATAACATCCTCAATGGTGG

>NC_019676|5|2|2168386-2168884|CRT
ATAACACCCTCAACGGCGG	TGCTGATGACGATTCATTAGATGTAGATGAATCAACAGGTA
ATAACATCCTCGATGGTGG	CGCAGGTGATGACTTGCTTTCGGCGGTTGGTTCCGAAGGAA
ATAACACTCTCAACGGCGG	TAATGGGGAAGATATATTAAACGTCGATCAGTCCATCGGCA
ATAACACCCTCAATGGTGG	TGCGAATGATGATGATCTGTTTGCGGTTGCGTCTGAGGGCG
ATAACACCCTCAACGGTGA	AGGCGGTAACGATAGATTAATTGCAGATCAATCCAGAGGTA
ATAACACCCTCGATGGTGG	GAATGGGAATGATGAGCTTTACGCCATTGGTGCTTCTGGAA
ACAACACCCTCAATGGTGG	TAATAATCAAGACACGTTAAACGCTGACAATTCCACAGGTA
ATAATACCCTCAATGGTGA	TGGGGGTGCTGATTATATTACGGCGATCGCTGCATCTGGTG
ATAACATCCTCAATGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015112724.1\|2157979_2158456_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019676.1\|WP_015112739.1\|2177200_2179777_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NC_019676.1\|WP_015112737.1\|2174917_2176093_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NC_019676.1\|WP_015112741.1\|2181112_2183461_+\|protein-kinase	unknown	unknown	gnl\|CDD\|380492
NC_019676.1\|WP_015112725.1\|2158469_2159285_-\|DUF1838-domain-containing-protein	unknown	unknown	gnl\|CDD\|378086
NC_019676.1\|WP_015112734.1\|2171751_2172927_-\|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl\|CDD\|214920
NC_019676.1\|WP_015112742.1\|2183987_2184431_+\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|379002
NC_019676.1\|WP_015112729.1\|2162094_2163012_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NC_019676.1\|WP_015112730.1\|2163070_2163589_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NC_019676.1\|WP_044499870.1\|2173000_2173786_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_019676.1\|WP_015112738.1\|2176100_2176982_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NC_019676.1\|WP_015112727.1\|2160528_2160852_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015112732.1\|2165269_2166037_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NC_019676.1\|WP_015112723.1\|2157251_2157620_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019676.1\|WP_044499869.1\|2170928_2171714_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017
NC_019676.1\|WP_015112736.1\|2174132_2174681_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239268
NC_019676.1\|WP_015112728.1\|2161190_2161994_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NC_019676.1\|WP_015112726.1\|2159380_2160226_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_019676.1\|WP_044499871.1\|2179860_2180535_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044500672.1\|2163661_2165101_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015112724.1\|2157979_2158456_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.25516e-15
NC_019676.1\|WP_015112739.1\|2177200_2179777_-\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	3.7309e-104
NC_019676.1\|WP_015112737.1\|2174917_2176093_+\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00047017
NC_019676.1\|WP_015112741.1\|2181112_2183461_+\|protein-kinase	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	3.55495e-58
NC_019676.1\|WP_015112725.1\|2158469_2159285_-\|DUF1838-domain-containing-protein	gnl\|CDD\|378086	pfam08894, DUF1838, Protein of unknown function (DUF1838). This family of proteins are functionally uncharacterized.	3.43393e-131
NC_019676.1\|WP_015112734.1\|2171751_2172927_-\|DNA-double-strand-break-repair-nuclease-NurA	gnl\|CDD\|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	3.67719e-55
NC_019676.1\|WP_015112729.1\|2162094_2163012_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	5.80218e-37
NC_019676.1\|WP_015112730.1\|2163070_2163589_-\|phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	2.08626e-34
NC_019676.1\|WP_044499870.1\|2173000_2173786_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	5.13159e-08
NC_019676.1\|WP_015112738.1\|2176100_2176982_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	1.48936e-17
NC_019676.1\|WP_015112732.1\|2165269_2166037_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	6.97268e-157
NC_019676.1\|WP_015112723.1\|2157251_2157620_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.75071e-16
NC_019676.1\|WP_044499869.1\|2170928_2171714_-\|FHA-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	6.55575e-13
NC_019676.1\|WP_015112736.1\|2174132_2174681_+\|AhpC/TSA-family-protein	gnl\|CDD\|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	7.27644e-23
NC_019676.1\|WP_015112728.1\|2161190_2161994_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	1.54426e-58
NC_019676.1\|WP_015112726.1\|2159380_2160226_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.52948e-57
NC_019676.1\|WP_015112742.1\|2183987_2184431_+\|ATP-synthase-subunit-I	gnl\|CDD\|379002	pfam12966, AtpR, N-ATPase, AtpR subunit. Membrane protein with three predicted transmembrane segments, two of which contain conserved Arg residues. AtpR genes are found in the N-ATPase (archaeal-type F1-Fo-ATPase) operons and are predicted to interact with the conserved Glu/Asp residues in the c subunits, regulating the assembly and/or function of the membrane-embedded ring of 'c' (proteolipid) subunits (pfam00137).	2.22883e-05
NC_019676.1\|WP_044500672.1\|2163661_2165101_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	8.40177e-147

>NC_019676.1|WP_015112732.1|2165269_2166037_+|class-II-glutamine-amidotransferase
MCQLLGMNCNVPTDICFSFEGFSARGGKTDDHNDGWGIAFFEGKGCRLLLDDKPSVTSPVADLVRRYPIHSTHVIAHIRKATQGEVALKNCHPFQRELWGRYWVFAHNGNLPDFHPQNMGFYEPVGNTDSEKAFCIILETLREAFPHGKPPLDKLNFVLRQITAEIAKVGVFNYLLSDGEHFFAHCSTKLTYIVRQAPFAAAHSIDQDMTVDFRELTSPSDRVAVIATTPLTDNEVWTTIQPGELLVFQDGLPQK
>NC_019676.1|WP_044500672.1|2163661_2165101_+|MFS-transporter
MNDSAQNRDLNPKLDFKTKLAYGAGDLGPAITANISIFFLLVFFTNVAGLPAGLAGSVLLIGKIWDAVNDPFVGTLTDKTKSRRWGRRLPWMLYGAIPFGIFFFLQWIVPQFSSDRSTNISALFWYYVVIGLISQVFYTVVNLPYTAMTPELTQDYDERTSLNSFRFTFSIGGSILSLILAQIVFSQIADRQQQYFVLAVICTVISVISLYWCIFGVRDRILAFEAKRIQIAEPPSLPFFEQLKIVFTNRPFLFVIGIYLFSWLGVQITASIIPYFVTNCMGLKEADVPTVMIAVQGTALVMLFVWSHLSKKIGKKLVYFLGMSLWIIAAAGLFFLQPGQLVLMYIMAMMAGVGVSTAYLVPWSMIPDVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNALQSAGFKEAVVGQTTLPIQPESALTAIRFAVGPIPTVCLICGLVLTYFYPITREMHAEILLKLKERRETLES
>NC_019676.1|WP_015112730.1|2163070_2163589_-|phosphoribosyltransferase
MPDLYVSWSEYHYKIEQLAVQVYQSGWEFNQIVCLARGGLRVGDIISRIYQKPLAILAASSYSGPGKQERGHLTFSHHLTMTTEQLGSHILLIDDLVDSGITLQQTIPWLRENVDSAIAEVRSAVIWYKACSVIKPDYYVDYLPDNPWIHQPFEHYEHTNPAALAEKMSQLC
>NC_019676.1|WP_015112729.1|2162094_2163012_+|AEC-family-transporter
MANLLELYVKLVGLILIGFFLGRKLPTTVPTRLGQLLFWVGVPVSIVAFLRQADLSAQIWIAPAIAHLAIFLGAFLAWLTIKGQAYLTNTTFQHPTQGSFILAAMVGNTGYIGFPVTLAMVGQDYFAWALFYDLLGSLFGAYGLGVALASRFGYGGTNYWQMAQAILINPALWSFGFGLLFRQVSISTTAEFYLEKLGWCAVALSLALIGMRLSLLNSWQRVPQAAVSLAIKMLLVPLLLGSTLSLFGVTGSAAKVIVLQMAMPPAFATMVLAETFDLDRDLAVTSLALGVILLLVTLPVWLWLF
>NC_019676.1|WP_015112728.1|2161190_2161994_-|D-alanyl-D-alanine-carboxypeptidase-family-protein
MNKAGFSGKPPNSSGDPGDDIPVALRDTPDVTSKTPLQPLVLLIGGVAGFILLAVVSGFFFSLTTPKKTADSQSPPANPLTTNSSGSPQDNNAVLGHLAYPEAPESELAPITADRRIRMRKTAAEKFRAMTQAARSAGVILVPISGFRSVKEQEQLFFEVGAQRNQTPAQRAALSAPPGHSEHHTGYAVDIGDGTASVTNLQADFDRTKAFGWLQTNAARFGFEMSFPQDNVQGVSYEPWHWRFVGDRQSLEMFYKARNLKPAKTSP
>NC_019676.1|WP_015112727.1|2160528_2160852_+|hypothetical-protein
MELPQRVSIRYKDTSYNISEIRLKTFQLAFKIWEEESKPRKTELYDFTLNCLKQFDRQDRFVVSYLFLELTDMIRNSSLERGMREVLIKTCFREFACALTDFENAEK
>NC_019676.1|WP_015112726.1|2159380_2160226_-|GGDEF-domain-containing-protein
MNLIKILEIQPKWCVISLSAFLIALIGWLDYQIPPEILIAIFYLIPIGIATWFADNCSGVLFSLISAITNFLVNQRPNFHYLHPLVPYWNTIVVLVFFLFTNYLLSQQKVTLKNLERLARTDALTGLHNRAFFLELVNIEIHKSLRHKEHLTIAYFDVDNFKYINDQFGHTVGDRLLCLVAENAKNNLRKIDIIARIGGDEFAILLPRTGYEASEIVLQRLQRTLSSAMQEQHWPVTFSIGAITFIKPPLSVTEMIEKADNLMYGAKKKGKNLLRHELSPN
>NC_019676.1|WP_015112725.1|2158469_2159285_-|DUF1838-domain-containing-protein
MVAEVKELEAHHWVKTRSSLDSSESTFLTWKGKIYSFIPGEKRKLLFKMLGVSVSRCISTEKGSWDFTSRELTYYLNPETEEILPKWKNPWTGETVPVLHVANNPVQGHFKDKFPAQVEGDSTTFVFDIFPTYPNPLAENPKFAEYSPYETYQAAELFKLTVPTADLFNTELNSVSQLKLSWDRIGQWLPWMKMGDRTGNLIYSAVGSKVGGLAELPQLLQDEINHRVPLYKQAPKAFADGEDMTSWLYFQKHFDAYLAGEIFPLPAAEEL
>NC_019676.1|WP_015112724.1|2157979_2158456_+|GNAT-family-N-acetyltransferase
MIRASTPDDAAALIAIAVAAELFPANETAELSNMLENYFSGNIGDGHLWLTDEENGEPCGVAYYAPAPFTDGTWDLLMIVVHPQYQRQGRGKALVQYVENALRASGQRILLVETSGLPSYDRARAFYTKCGFEEEARIRDFYKAGEDKVVFRKALNAE
>NC_019676.1|WP_015112723.1|2157251_2157620_+|pentapeptide-repeat-containing-protein
MDAEQLKRSYDAGERYFPAANLSRARLISAYLPGINLWGADLSQANLAKAKLWGADLSQANLAKANLTRANLCGVKLKEANLRGAKLNFTKLYGADLSGAYYDDSTVFSKGFDPVCRNMRKF
>NC_019676.1|WP_044499869.1|2170928_2171714_-|FHA-domain-containing-protein
MQNINQITTTVLSLELFHVQTNTAVELPPNLTVIRVGKPNDQNPPDIDVSSLPNAEVVSRIHAQIIVDGSNYLIEDLGSANGTFLNDIKLEQGITHTLKIGDRIDLGQGHSVTFIFQNSPTHPQNLLTSAQITQISPQLVKQNKPIVVDKTTKLLGLTLIVASIVISTANIRIGIFFGLPSVILCFVGIFVLCQQRINPNLGWILIALGIAIMIFTGRLFASVNLLLLLVTSALFFIGYLLFTTGKIFGYDWRSLPQIINK
>NC_019676.1|WP_015112734.1|2171751_2172927_-|DNA-double-strand-break-repair-nuclease-NurA
MLDLTKLARQMQGLSQHLSLEAVAGRQRLELAQQHLINAYKCQQDLIERQEKWRDRILFANATPIEPLETRIDIPVPPKVHTVIATDGSQIAPSHHEIAYCYLLNIGRVVLHYGQNRHPLLDSLPEVFYRPEDLYASRQWGIRTEEWMGFCRTTSEATVLAELACAAKSDAPTLAMVDGSLVYWFLEQLPLDARDRILPPILQAWQQLREAGIPLMGYLSASRNVEGINFLRLMACPHPVPDCVSYCPNQLEKVPCKVFEPLRDTSLWSTQLQPGQRGPLWRSNARILEFYEGQSIYFCYVHVGTEIARIELPAWVVENTAMLDQALGLMLAQVQKGYGYPVAIAEAHNQAVVRGGDKARFFALLEKQMIKAGLKNVGTSYKEARKRGSIA
>NC_019676.1|WP_044499870.1|2173000_2173786_-|HAD-family-hydrolase
MTANSPTILALDFDGVICDGLIEYFEVAWRTYCKLWSPANDTPPDDLALRFYRLRPVIETGWEMPVLIKALLEGMSDEQILQEWTTITPQILLKNNLLAREIGAKLDHIRDEWIATDLQGWLNLHRFYPGVIEKIKLTVASDVQLFIVTTKEGRFVQQLLQQEGVNLPATAIFGKEVKRPKYEILRELIQTANQQPVSLWFVEDRIKTLQLVQQQADLEDVKLFLADWGYNTQPERKAAQDDQRIELLSLSQFAKAFADWL
>NC_019676.1|WP_015112736.1|2174132_2174681_+|AhpC/TSA-family-protein
MITQSETTTSPKLIMGNQAPVLEVKTLDGNIWKLSDQNPENYTMIVFYRGLHCPICEQYITDLEQKLDAFKQLGVGAIALSGDSLEKAQQFQAKANIQHLTIGYSLTPDEMRRWGLYLTKGHFESEPALFSEPAVFLIKPDGRLYFANIGTHPFSRVDFGFLLQGLEYIIPRNYPFRGTEWE
>NC_019676.1|WP_015112737.1|2174917_2176093_+|ATP-binding-protein
MPSLKLSVTGVEIVKQARKEKAWTIDDPRWLEAVSQILKPECSWENAEVFVAGVSLPTWKRFLRGDGIDASVFKAFCQVLGLNWQELIDRPFKSPSSSTTQIPDIPLFFGRDYELATLIKSVEDGTRLLVITGIGGIGKTAIATKLAAALQPQFKQTLWFSVHLTSLSTHTPKALESQTLMVFDGWDEILRAGQYPLGAEFLRTVVQTTHNSCVILTSREQPEGLNILSAAGAVIFPLGGLMEGAIELLQHHRLTFNAQQWVALVNQYGGNPLFLNMAANFIHELFAGDVGEFLACGTIVAGEFEPLVSEWLKYISPVEKILIKFLTTSIQGFTREEILLNLASDATNGDILKALLSLKRRGLVETIKDGEKERFFLQLVIFKCVRRLFNE
>NC_019676.1|WP_015112738.1|2176100_2176982_-|DUF2207-domain-containing-protein
MWTKHIQRLCLFCLGLFLILGLSINHATAQSPPFYWEFMNVNIAVQTNGDMLITEMQKYTFTGDYKNQRYRYIPIDKLDKITEVSVSENGKLLPTATGVENNQLWIRWEHQLNPPESHTFVLKYRVIGGLHVNDNNAKVYWKAIFADRQASINQAKVTVELPEQFAASIKDFQSYGVSADIRQVNTKIIEFVAKEAIKPKNELEVQVTFDRTGTNVTTPQWQNSQFQPNSSGFWWLFWLFFLVIFLFSSSNNRSKGGGGGGGDGGGCGGGGCGGGGCGGGGCGGGGCGGGGGG
>NC_019676.1|WP_015112739.1|2177200_2179777_-|S8-family-serine-peptidase
MTTIPSDPLFPNQWYLYNQGQSGGTPGIDLNVVNVWEDYTGRGVVVGVIDDGFDYTHYDLDNNYDTTRDYDTIEQNFDPFGNAIDSHGTSVAGIIASEANGVGTVGVAFNATISGIRAIGFGGDVVGALWRAESFDVVNNSWGVSGFFADNFYTIPQAGQAIANAVTNGRNGLGTAIVFAAGNSRQEGDNTNYHNFQNSRQVITVAALDHNGFASPYSTPGASILVSAFGSGYDGSIVTTDRQGSDGYSFEDYNYSFNGTSAAAPQVSGVVALLLEANRNLGYRDIQEILAYSARQNDFYNQGGNYIWQINGANNFNGGGLHVSHDYGFGLVDAHAAVRLAETWQKQSVFSNEQSLSYSSGNLGLVIPDSNTGGISSTFTVAAGLDVDWVEVELNLTHSYRGDLVVDLISPSGTISRLINQPGDGWDSGDNIVFKLSSSQHWGESSAGNWTLRIQDLFLSDTGILNSWNLRLYGDTDTANDTYFYTNEYGFYGTTTPSDNTGTDTINAAAITSNSYLDLNAGSTSILNGTTLIINTGTIIENAFGGDGNDTIIGNSAANVLSGGRGDDSLDGGAGNDTLRGGRDNDTYIVNTSGDVVIENANEGIDTIRTSISYTLGANLENLILTGTAAINGTGNTLNNSITGNSGNNTLNGGVGNDTLNGGAGNDTYTVDSIGDVVIENANEGTDTIRTSISYTLGSNLENLILTGTAAINGTGNTLNNSITGNSGNNTLNGGAGNDTLTAGAGNDTLTGGLGRDSFNFNSRTEGIDRITDFSVIDDTIFVSASGFGGGLVTGAAIAANRFVIGAAATTSSQRFIYNNVTGGLFFDADGTGAIARIQFATLSAGLSLTNADIFVNT
>NC_019676.1|WP_044499871.1|2179860_2180535_-|hypothetical-protein
MKYFILIFLLLKAMPTRKIAAGVFFSLLLFESVFIAPVNALNAKELYQLCSSFPLNSRCQGYEAPISLDNRSGKKGDCILKKHDLEKRGNCKINVNETGITVYQEMGERLEIINDKKSTRIIQIFPNNISRIEYREDEKDNTDARVVNTLLFGITGFLLTPNKKISEIQINYASATPEDTSQEQQSMDYLRIFVGRGTGREMRSQLEKITGLQAETPQATKLAN
>NC_019676.1|WP_015112741.1|2181112_2183461_+|protein-kinase
MVYCINPDCSQRENSDNCAVCQNCKTPLILQNRYIIKQPLQVDKYRYAEVFEIEDLLDKNKLKILKSLKQVTPKLLRLFEQEASILISLRHPGLPVGEILFPLILNTGRQLRCLVMEKIPGDNLQNWLSRNQYVKSYKTVINWLKQLTQILQFVHDNHFFHRDIKPANIMLCPNGKLVLIDFGTARQVTQTVINNQEVTVIISPGYTAPEQCDGHAVLQSDFYALGQTCIYLLTGNNPTKADHKSHNWYNNVKDQETPKRLIELIQMMTNSHPHRRPATTQVILNKISQIETNPQIQWRQFLLIGACGALVILGTKWLYKIVTTLRTCDYIEGDHLSCGEESLIPQSFWQSNQPPAAKQLAIDEYRSKNFAEAARLFEIAFNKETDPETLIYWNNAKIQTQFPASKIHTIAAAVPLERSTTVGLEILRGIAQAQTELLNKQPSLPLRIIIADDSNRDNSKAGNNARKVAQNLVKYEDLLGVLGHYSSDTTKQALPIYGLAQIVLISGSSTSTNLKSPFFFRTIPSDRISAQKIASYLFSQFKQPQVAIFLSEESEYTQSLSKAFREEVKSLQGKVLDHQSGFNLAMDSFDAEKALNQAQTQGANAILLIPDAGVGLYNAIPHALQVIEANVNGVQIVVGDSLNRSDLLTSGKVISSPAIEQTVWSIAWHPINNINSPFAQQAQTIWRIDDKTFSSNTQITWRTATTYDAVMVISKAIAQKPTRLGIQQILADKNFAVTGATGIIQFEGSDRKNATVTILSVRRKCNSSDFVFVPGDRPLKCQ
>NC_019676.1|WP_015112742.1|2183987_2184431_+|ATP-synthase-subunit-I
MSLSEEPIAPTPTTQQDAPSGFEETESVSTSMQEFHQLYQKLLVITLVLTGIIFISVWIFYSLNTALNYLIGACTGVVYLKMLAKDVEQLGAEKNRLSKNRFALFVGLIVLATQWHDLHVLPIFLGFLTYKATLLVYTVQTAFISDS

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Crispr_ID: NC_019676_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_6

2728758-2730094

Orphan

I-D,II-B

Consensus_repeat	Method
GTTT----------CAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	PILER-CR
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CRT

18 spacers

The CRISPR arrays of NC_019676_6

>merge|NC_019676|6|2728758-2730094|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTTCAAGGTCTGGGGTGTAGGGTTAGACCCCTCATGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCCTCTGTCTGCTCTGTAATCCTTAACTACTCCATCGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCATTCAGAAAGATTCCAGCTTCATCAAGACATACGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACGTAAAAATATTCGTCCAGTTAAATTAAATGATTCGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTGACGCTGACTCACTGGCACTTGCTTGTTACCAATTTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTGCTAGAGGCTCTCCGCTTGTTGAAGGCGAAACACTTAACTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCATTTTCTTGATTATTCATTATCTAATCCTTAAGGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCCAATGGTTTGAGTCGGTTTCTTTAGGGTTTACAGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACATTTATTGTAAATCCTGGAATAAATAGGCGAAGAAAGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACGCTGACTCACTGGCACTTGCTTGTTACCAATTTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCTTAGTAATCAAAAATGTAATCAAAGGATGAACCAGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTTGATAAGTAAACTAAAACCGAAAGTAGCAACGAGCGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTGATTATCAACCTTCATCCTCTGATATTGATGGTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTACTAATATTCCTGATTCTGATGCTGATGGTGATGGTGTTCCTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCTGTTTTTCAGATTGAGCGATAAACAATACATACTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACCCTGATTCTGATGCTGATGGTGATGGTGTTCCTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTTCAACCGTTCTTCTTGGGAGCAGCTTACTGAGCGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAACTTTAAAGCAAATCGAAAACCACAAACAGTAGTGTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC

>NC_019676|6|1|2728758-2729661|PILER-CR
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTCAAGGTCTGGGGTGTAGGGTTAGACCCCTCAT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCTCTGTCTGCTCTGTAATCCTTAACTACTCCATC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTCAGAAAGATTCCAGCTTCATCAAGACATAC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GTAAAAATATTCGTCCAGTTAAATTAAATGATTC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGACGCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGCTAGAGGCTCTCCGCTTGTTGAAGGCGAAACACTTAACT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTTTCTTGATTATTCATTATCTAATCCTTAAG
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCAATGGTTTGAGTCGGTTTCTTTAGGGTTTACA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	ATTTATTGTAAATCCTGGAATAAATAGGCGAAGAAA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CTTAGTAATCAAAAATGTAATCAAAGGATGAACCA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTGATAAGTAAACTAAAACCGAAAGTAGCAACGAGC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC

>NC_019676|6|4|2728758-2730094|CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTCAAGGTCTGGGGTGTAGGGTTAGACCCCTCAT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCTCTGTCTGCTCTGTAATCCTTAACTACTCCATC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTCAGAAAGATTCCAGCTTCATCAAGACATAC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GTAAAAATATTCGTCCAGTTAAATTAAATGATTC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGACGCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGCTAGAGGCTCTCCGCTTGTTGAAGGCGAAACACTTAACT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTTTCTTGATTATTCATTATCTAATCCTTAAG
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCAATGGTTTGAGTCGGTTTCTTTAGGGTTTACA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	ATTTATTGTAAATCCTGGAATAAATAGGCGAAGAAA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CTTAGTAATCAAAAATGTAATCAAAGGATGAACCA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTGATAAGTAAACTAAAACCGAAAGTAGCAACGAGC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGATTATCAACCTTCATCCTCTGATATTGATGGT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TACTAATATTCCTGATTCTGATGCTGATGGTGATGGTGTTCCT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CTGTTTTTCAGATTGAGCGATAAACAATACATACT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCTGATTCTGATGCTGATGGTGATGGTGTTCCT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTCAACCGTTCTTCTTGGGAGCAGCTTACTGAGC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTTAAAGCAAATCGAAAACCACAAACAGTAGT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC

>NC_019676|6|3|2728758-2730094|CRT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTCAAGGTCTGGGGTGTAGGGTTAGACCCCTCAT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCTCTGTCTGCTCTGTAATCCTTAACTACTCCATC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTCAGAAAGATTCCAGCTTCATCAAGACATAC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GTAAAAATATTCGTCCAGTTAAATTAAATGATTC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGACGCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGCTAGAGGCTCTCCGCTTGTTGAAGGCGAAACACTTAACT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CATTTTCTTGATTATTCATTATCTAATCCTTAAG
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCAATGGTTTGAGTCGGTTTCTTTAGGGTTTACA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	ATTTATTGTAAATCCTGGAATAAATAGGCGAAGAAA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	GCTGACTCACTGGCACTTGCTTGTTACCAATTT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CTTAGTAATCAAAAATGTAATCAAAGGATGAACCA
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTGATAAGTAAACTAAAACCGAAAGTAGCAACGAGC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TGATTATCAACCTTCATCCTCTGATATTGATGGT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TACTAATATTCCTGATTCTGATGCTGATGGTGATGGTGTTCCT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CTGTTTTTCAGATTGAGCGATAAACAATACATACT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	CCTGATTCTGATGCTGATGGTGATGGTGTTCCT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTCAACCGTTCTTCTTGGGAGCAGCTTACTGAGC
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC	TTTAAAGCAAATCGAAAACCACAAACAGTAGT
GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113162.1\|2734470_2734923_-\|DUF4332-domain-containing-protein	unknown	unknown	gnl\|CDD\|372972
NC_019676.1\|WP_015113164.1\|2736026_2738471_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|236842
NC_019676.1\|WP_015113163.1\|2735103_2735685_-\|TIGR04376-family-protein	unknown	unknown	gnl\|CDD\|275169
NC_019676.1\|WP_015113159.1\|2730394_2731879_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_019676.1\|WP_015113149.1\|2722009_2722852_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223492
NC_019676.1\|WP_015113152.1\|2724944_2726123_-\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_019676.1\|WP_015113158.1\|2728274_2728538_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113169.1\|2741686_2743171_+\|CIA30-family-protein	unknown	unknown	gnl\|CDD\|369941
NC_019676.1\|WP_015113148.1\|2721596_2722013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366351
NC_019676.1\|WP_015113150.1\|2722975_2723455_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NC_019676.1\|WP_015113168.1\|2741038_2741536_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|200361
NC_019676.1\|WP_015113153.1\|2726190_2726436_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113165.1\|2738467_2739757_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_019676.1\|WP_015113155.1\|2726549_2726807_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113161.1\|2733828_2734443_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_019676.1\|WP_015113167.1\|2740061_2740949_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_019676.1\|WP_015113156.1\|2727006_2727264_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113157.1\|2727399_2727645_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113151.1\|2723553_2724654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375425
NC_019676.1\|WP_015113160.1\|2731970_2733527_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113162.1\|2734470_2734923_-\|DUF4332-domain-containing-protein	gnl\|CDD\|372972	pfam14229, DUF4332, Domain of unknown function (DUF4332). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 134 and 356 amino acids in length. This domain contains helix-hairpin-helix motifs.	8.11608e-45
NC_019676.1\|WP_015113164.1\|2736026_2738471_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.60263e-81
NC_019676.1\|WP_015113159.1\|2730394_2731879_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.67981e-103
NC_019676.1\|WP_015113149.1\|2722009_2722852_-\|hypothetical-protein	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	1.46918e-68
NC_019676.1\|WP_015113152.1\|2724944_2726123_-\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	5.55449e-09
NC_019676.1\|WP_015113163.1\|2735103_2735685_-\|TIGR04376-family-protein	gnl\|CDD\|275169	TIGR04376, conserved_hypothetical_protein, TIGR04376 family protein. Members of this protein family resemble TIGR04375 and, more distantly, to phage shock protein A (PspA). Members are restricted to the Cyanobacteria.	1.82321e-82
NC_019676.1\|WP_015113161.1\|2733828_2734443_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.18852e-16
NC_019676.1\|WP_015113160.1\|2731970_2733527_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.09038e-99
NC_019676.1\|WP_015113168.1\|2741038_2741536_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	3.012e-54
NC_019676.1\|WP_015113165.1\|2738467_2739757_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.01603e-56
NC_019676.1\|WP_015113148.1\|2721596_2722013_-\|hypothetical-protein	gnl\|CDD\|366351	pfam00875, DNA_photolyase, DNA photolyase. This domain binds a light harvesting cofactor.	2.52631e-05
NC_019676.1\|WP_015113167.1\|2740061_2740949_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.48561e-22
NC_019676.1\|WP_015113169.1\|2741686_2743171_+\|CIA30-family-protein	gnl\|CDD\|369941	pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30). This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.	3.46863e-66
NC_019676.1\|WP_015113151.1\|2723553_2724654_-\|hypothetical-protein	gnl\|CDD\|375425	pfam17914, HopA1, HopA1 effector protein family. This family includes the HopA1 effector protein from Pseudomonas syringae. Structurally this protein has an alpha + beta fold. The effector protein HopA1 was shown to affect the EDS1 complex by binding EDS1 directly and activating the immune response signaling pathway.	8.77651e-64
NC_019676.1\|WP_015113150.1\|2722975_2723455_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.95934e-79

>NC_019676.1|WP_015113158.1|2728274_2728538_-|hypothetical-protein
MARITISDLYLNNNEQHITELTAWEARTVEAGASTITIDTSDLLKLQQNINDILQGVSNQLRQQQQQQQQPNNSYGLRQPYDNYVYY
>NC_019676.1|WP_015113157.1|2727399_2727645_-|hypothetical-protein
MANITLSELNAAGSQLFQGSESFLNDLSDVDAIAGGSGYGYGYDGFGFNKLIEGFVDVYAIQHVYGIAKSFSKGGYGVSGY
>NC_019676.1|WP_015113156.1|2727006_2727264_-|hypothetical-protein
MANITLSALNAAGSQLFQDSESFLNDLSDVDAIATHGAENNSNSYVSDFYGFNKLIEGYVGVYAIQHIYGIAKSFSQGGYGVSGY
>NC_019676.1|WP_015113155.1|2726549_2726807_-|hypothetical-protein
MANITLSELNIAGSQLFQDSESFLNDLSDVDLSAAHGGNNANYADYGYGSDSYISVFNKLIEGFVVVYAIQHIFSIAKSFSKYNY
>NC_019676.1|WP_015113153.1|2726190_2726436_-|hypothetical-protein
MAKIIIDELSFSDLESYLTEVNDLDSLSIYGGESELQQILDFAYNLLNFVLSAYAIYNISLITKSFKITRNKTTRSVFSLF
>NC_019676.1|WP_015113152.1|2724944_2726123_-|aminoglycoside-phosphotransferase-family-protein
MPFLLSSQNVFEYLLTVGFCTQAEQSLSKIEPKPAKNFNLLVTLPDNRQLLVKQERLNREGNTAGEFFAEWRVHQFLQKFPDMNHICLCCSEAVHFDAENSIIVFNYLNNYRDLADFYMRENIFPSDIAIAVGKTLALIHRATITHPDYEQFFHQAKQVSHPKNPNLTLGLERITPEIFGLVPSEGLKFFTLYQRYDSLGQAIAELNRSYTRYCLTHHDLKLNNILLSLTWQEAIANNSVSDESMIRLIDWERADWGDPAHDLGMLIASYLQFWLYSMTTSKSMAIEESLRLATTPLEIVQPSIAALMSTYLAHFPEILETRSDFLERVMQFCGLALITAIQAGLQHEKTFGNVGICMLQVAKSLLCNPKASIKTIFGVEAVELLPTNLSRN
>NC_019676.1|WP_015113151.1|2723553_2724654_-|hypothetical-protein
MQMLDSIATQLSQIPESLQISLQDIIYNIEIQSAYCIKHPDYKPLELPESAVSRFQQLPAALQKKFLSLQLRGFLYGIYYNNSLKSSLIANTETNNVALHQNLENNTLLGVDVAFYERLHESNRGDGYWSYNWQVVQENLDNTLIVQKDGLTLQIERSRHLLPQNQFPVVGKYVAVKMPKNLVQNGFYMAVANAGSATNRERLVRVYFNVTPEGAGAVMETLTTQLNFLEIPFSFKALYNPSDYERYDSAVFYFDKNNYEAIHPVLERMYAECESYFQPEIPLFTKFIAPGLAIAEEPNRRFAELESFGTHRCQIIANGLLEAWGQGNDTPANRITAILEQFSLSQVELQRPYLNANSQDIYMALF
>NC_019676.1|WP_015113150.1|2722975_2723455_+|thioredoxin-dependent-thiol-peroxidase
MSNIPQVGQPAPAFSTPDQNENLVSLDDFSGQWIVLYFYPKDDTPGCTTEAQDFTALHSEFSQLGAKILGVSLDSAKSHCKFINKHNLSITLLSDPEHQLADSYGAWQLKKFMGKEYMGVVRSTFLISPDKIIAYTWPNVKAKGHAQAVFTKLSELANN
>NC_019676.1|WP_015113149.1|2722009_2722852_-|hypothetical-protein
MLRKFTGRDELIAYLREHFPQAAERDDHISNSIGGRKAAQTALQKVDPSTYSKTRNFLTGAVTKLSPYIRYGVLSLAEIRDYVLDNVDQLEDATKLINELGWRDYWQRLYAKLGNGIWQDQEEYKTGYTAPEYAAELPPDIQAGSTGRVCIDNFSQELRETGYLHNHSRMWLAAYILHWRHIRWQAGAKWFLQHLLDGDPASNNMSWQWVASTFSHKPYFFNRDNLERYTKGVYCQKCPLYGHCDFEGSYEELEQRLFPQGEFIKKPNSQNWQHGKKGKK
>NC_019676.1|WP_015113148.1|2721596_2722013_-|hypothetical-protein
MNNPIIWIHGDCLSPTNPALQAYPNAPAIWVWDDALIEEWQLSLKRIAFIYECLLELPVEIRRGNVAQEISTFAQENHANLVVTAASPSPRFDDICDAIERSVKLEILAVEPFFEYDGYIDLKRFSRYWKVAEKYVFE
>NC_019676.1|WP_015113159.1|2730394_2731879_-|insulinase-family-protein
MKFKISNARRLIYVVMFAFAFLLLTFDFSLAATTTAKHYTELKLPALPAVKLPKYERFVLQNGLVVYLVEDHELPLVSGSALLRTGSRWEPGEKIGLAGLTGAVMRTGGTKKHSPDELNEILEQRAASVETSIGEGSGNASFDALSENLETVFGLFAEVLREPVFAQNQLDLAKTQAKGGIARRNDDPNSIASREFKKLVYGKASPYARTVEYATLDQINRDDLVQFYQQYFHPNNMILGIVGDFDSKKMRSLIQAKLGNWQRNPKITQPKLPEVAAANQGGVFFVNQPQLTQSSVLIGHLGGRFDSPDYAPLDVLNGVLNGFGGRLFNEVRSRQGLAYSVYGYWSPRFDYPGMFLAGGQTRSDATVQFVKSLQTEIKRIQAQPVTAKELAFAKESTLNSFVFNFQDPGQTLSRLMRYEYYGYPSDFLFRYQKAVAATTAADVQRVAKQYLKPENLVTLVVGNQTTIKPPLTGLAKQVTPIDVTIPGSPSQATN
>NC_019676.1|WP_015113160.1|2731970_2733527_-|insulinase-family-protein
MTYFAIAILVSGSLPEMALAQTQTAPPPPRTVQPSKAPDQSSIQPYLDRVVKQLTKFQLDNGMKFIVLERHQAPVVSFLTYADVGGVDEPDKKTGVAHFLEHLAFKGTQRIGTTDYKAEKPLLERLEQLDNQIRTAKADGKKDEVARLQAEFKQVEAQAGKLVKQNEMGQIVEQAGGVGLNANTSTEATRYFYSFPSNKLELWMSLESERFLEPVLSREFFKEKDVILEERRLRVENSPIGLMIEKFIDAAYKVHPYRRPVIGYDEDIRNLTPEDVQKFFDTYYAPNNLAIAIVGDVNPNEVKRLAQIYFGRFQAKAKPQSQIPVEPKQTETRQVTLELASQPWYLEGYHRPAIKHPDNAVYEIISRLLSEGRTSRLYKSLVEKQQLALTAQGYSGFPGDKYPNLMLFYALTAPGNSVDELAKGLRQEIDNLKTQPVTAVELQRVKTQARADLLRSLDSNTGMAQLLLEYEVKTGDWQNLFKQLDEIAAVTPTDIQRVAKAAFTAENRTIGKLLSKKA
>NC_019676.1|WP_015113161.1|2733828_2734443_+|TetR/AcrR-family-transcriptional-regulator
MRVFNSPPPSEAQTRTRILQAARRLFASQGFDGTTTRDLAQTAGVAEGTLFRHFSNKKAILVEVATSGWVEILTDLLTELSEMGSYKAIAQVMRRRMWNFQKNADLMRVCFMEVQFHPDLRDRIQIEVINKMTDVAEAFFQTAMDKGIYRQTDAKLVAKVFLGMFAIAGFSNNTLMEPDASPQEMQKMAEGLADIFLNGVLVKE
>NC_019676.1|WP_015113162.1|2734470_2734923_-|DUF4332-domain-containing-protein
MSAKPTDKSRSRIQSGDWPIEQLPGLSQEEQSQLQVCGIKTTRSLFNQGKTLEARVALASKLQVHLQYVNKWLALADLSRIPTVGTQYCGLLLHAGIASVAQLAETPSHRLHRQIMRLQVATLQRRDLCPSIELVQQWNQQAKTVLSVEC
>NC_019676.1|WP_015113163.1|2735103_2735685_-|TIGR04376-family-protein
MGLFDDLSRFLENRLEEFLRNNPHLELEALLEQLRQQEEDTLKLIADLQVQEKRSQDDILSTAQEIQRWHIRVQKAKDGGRQDLVAAAQEREAALLREGNQKWGHMQGLKERLNQSQELLGKIQVRRQEVQAKAAQAQTARAQAQAQQQRIETNGWTNSPQSSANSFDDLEEKFRRWETEDELDAMKRNLGKK
>NC_019676.1|WP_015113164.1|2736026_2738471_+|hybrid-sensor-histidine-kinase/response-regulator
MKLWRKSESSPLECDTKNNYSRNLLLRFVLGGTTIVVSIAAYCTYLAARNLALADLQQSAFQQVQRGVDEIEEWLHVRNVEVQTLANTSTVRSLDWSVAYPYLQKEVKRINEFFFFQIVTPNGSFSNTQVGRSNKNIKDRDFFQKALAGQSNISDPLISRSTGIPLIAIATPIYGNSQANGSPIGVFHGNVKVDRINKVVNSLRYGNNSYAFALNSQGQAIVHPNAALMSTVEKPAPSLLKIADRNLNAIAQQMVNKQQGIQLLEIDGTKKYVAYIPLQEANWSLALVIPRENIESRLQFLDLIALIVAGLTVTMITVLWRVQAFEQAQLKKSQTAAETANLAKSEFLANMSHELRTPLNGILGCAQILLRSQGLAEKEQYHVNIIEQCGSHLLTLINDILDLSKIEARKLELHPHDVHFPSFLQGIAEIAQIRAEQKGILFVYETTNDLPTAIHIDVKRLRQVLLNLLGNAIKFTDEGKVTFKIEAIAQLDSHGQTQKYSIHCSIKDTGIGIAPAELNKIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVKSQVGEGSTFWFELEMPTASEWVKSAMAASTKQILGFEDSPRTILMVDDRWENRTVITNLLQPLGFNVVEANNGQEGLAKAIAIKPDLVITDLLMPEMDGFELIHSLRCTPEIQDVKIIVSSASVFETDQNRSLQAGGNDFLSKPVQVDELLNQLEKHLNLTWIYQQSQSERQVTNKLATVNIPSDSLIPPPPEVLQELITLAKKGNFNAILKWADQLEASEPNFANFANQLRQLARQFDEDSLISFLNQNEVETR
>NC_019676.1|WP_015113165.1|2738467_2739757_+|hybrid-sensor-histidine-kinase/response-regulator
MTAIISEQTYICDRHPRGIVLVVDDNPANLQVLSSFLDESNFEVWAVRSGEKALQKLNSDNLPDLILLDVMMPGMDGFETCQHLKNDPRSEDIPIIFMTALSETDDKVKGLRLGAVDYITKPFQHEEVLVRIEHHLQLRNLTKTLIAQNTELQKTQTQLIQAEKVATLGQLAAGIAHEVNNPINFIAGNLNFLEQYVQEIIDLLELYQKHLTEPPNEIKTAIEKSNLSFLLNDISKIIQSMQLGTNRVTEIVSSLNKFSRHSEAGKKLANLHEGIENTLLILGHRLKANAHRDTILIIKEYGNLPLVDCYPGEINQVFMNLICNAIDAIEESQKNQKFPETSNNPGVIRITTELKGEKVILKIADNGLGISEAEKTKIFDAFYTTKPVGKGTGLGLSIAYQIVVNNHHGKLYYQSKLGEGLEFIIELPI
>NC_019676.1|WP_015113167.1|2740061_2740949_-|alpha/beta-hydrolase
MLQFQPPGFGHKVIHTSLGAMVYYTQTSAPWLNADTEDLTPLIFLHNFGGGASAYEWSKVYPAFAAKYRILAPDLIGWGDSAHPVRDYQIKDYLTTLAEFITQTCHQPVTVIASSLTAALTIRLAISQPQLFQSLYLVSPSGFDDFGQGAGRRLPLSVINTPLLDSLIYALGAENELAVRNFLQSFLFAQPERVSPEMVAAYLTSAQQPNARFAALAFLRGDLYFDLSLYLQRLTTPSVFFWGEKAQFTNIKLGRRLANLNLNAVEKFYAIADAGVLPHLELPEIIIGLLQQHLN
>NC_019676.1|WP_015113168.1|2741038_2741536_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MSQLEQAQAQYTSFLQEFQSVIISTVNQDGIPNSSYAPFVVDETKNIYIYISDLAIHTQNIYANPRLSILFIEDEAKSNNIFARRRLSFDCTATLIERDTDTWNKIVDQFQECFGEMIEVLKGLADFRIFQLVPSSGRFILGFGNAYKISGDNLNELTHITRDNR
>NC_019676.1|WP_015113169.1|2741686_2743171_+|CIA30-family-protein
MSDKNRSQWDLGRFIKTLSYFEVIPFLNCIQKLIQGRPQKTTSRPNGEKSVGVILVAGATGGLGKRVVKRLVKRGYQVRGLVRDIEKARSILGDDVDLVVADITKPETLNTLVMANIQAVICFTAVRVQPMEGDTANREKYYQGIKFYQPEIVGDTPENVEYQGVKNLVEAAAKHLPAANEKLIFDFTHPSDELKNIWGALDDVVMGGVSSSNIQLTENTAVFAGNVSTANSGGFASVRTKNFDPPFNLSGYIGVELRVKGDGQRYKIFLRPDATWDGLGYSYSFDTVANTWINVRIPFAELTPVFRAKTVKDAPPLDASRISSFQLMLSKFEYDGALNPKFTPGGFSLQIESIKAYNGKTAPQFVLVSSAGVTRPGRPGINLDEEPPAVRLNDQLGGILTWKLKGEDSLRVSGIPYTIVRPCALTEESGGQEVIFEQGDNIRGKISREDVAEICVQALEQSKVHNVTFEVKATENEVNYLNWETLFSNLQPDK

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Crispr_ID: NC_019676_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_7

3230314-3230937

Orphan

I-D,II-B

Consensus_repeat	Method
GTTT----------CAATCCCTAATAGGGATTAAGTGAAATTTCAAC	PILER-CR
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	CRT

8 spacers

The CRISPR arrays of NC_019676_7

>merge|NC_019676|7|3230314-3230937|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACCAAATTTATCTTTGTGTTTGCCGCCTATGATTTTGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACTTTCTTCCCGCCAACGCTGTCACCTGACTCTAAAAGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACTTAATATGTCCACAATCCGCCAAGTTTTAGATGAGGGCGAGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACATTGTTTACTGATGTCCACATATTTAAGCTTATGAGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACTTGCGAGTGCCGCGTATTTTAATGGCTCCATCTGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACTGTATATGTAATAGCAGTAAATAACGGTCAACCCAGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACGGGTAATTTGTCTGAGTCAGTATGACAAAATCGCTGCTTGGGGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAACTTATCAGGAGTAAAACGGCGGACAATTTTAAATTGAAGTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC

>NC_019676|7|2|3230314-3230937|PILER-CR
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	CAAATTTATCTTTGTGTTTGCCGCCTATGATTTT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTTCTTCCCGCCAACGCTGTCACCTGACTCTAAAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTAATATGTCCACAATCCGCCAAGTTTTAGATGAGGGCGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	ATTGTTTACTGATGTCCACATATTTAAGCTTATGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTGCGAGTGCCGCGTATTTTAATGGCTCCATCT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TGTATATGTAATAGCAGTAAATAACGGTCAACCCA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	GGGTAATTTGTCTGAGTCAGTATGACAAAATCGCTGCTTGGG
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTATCAGGAGTAAAACGGCGGACAATTTTAAATTGAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC

>NC_019676|7|5|3230314-3230937|CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	CAAATTTATCTTTGTGTTTGCCGCCTATGATTTT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTTCTTCCCGCCAACGCTGTCACCTGACTCTAAAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTAATATGTCCACAATCCGCCAAGTTTTAGATGAGGGCGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	ATTGTTTACTGATGTCCACATATTTAAGCTTATGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTGCGAGTGCCGCGTATTTTAATGGCTCCATCT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TGTATATGTAATAGCAGTAAATAACGGTCAACCCA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	GGGTAATTTGTCTGAGTCAGTATGACAAAATCGCTGCTTGGG
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTATCAGGAGTAAAACGGCGGACAATTTTAAATTGAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC

>NC_019676|7|4|3230314-3230937|CRT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	CAAATTTATCTTTGTGTTTGCCGCCTATGATTTT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTTCTTCCCGCCAACGCTGTCACCTGACTCTAAAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTAATATGTCCACAATCCGCCAAGTTTTAGATGAGGGCGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	ATTGTTTACTGATGTCCACATATTTAAGCTTATGA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTGCGAGTGCCGCGTATTTTAATGGCTCCATCT
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TGTATATGTAATAGCAGTAAATAACGGTCAACCCA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	GGGTAATTTGTCTGAGTCAGTATGACAAAATCGCTGCTTGGG
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC	TTATCAGGAGTAAAACGGCGGACAATTTTAAATTGAA
GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113593.1\|3235557_3237147_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|223963
NC_019676.1\|WP_015113592.1\|3233272_3235093_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_019676.1\|WP_044499961.1\|3222648_3223305_-\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NC_019676.1\|WP_015113584.1\|3223402_3224647_-\|bifunctional-sterol-desaturase/short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236016
NC_019676.1\|WP_015113588.1\|3227128_3227407_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113587.1\|3226253_3227021_-\|intradiol-ring-cleavage-dioxygenase	unknown	unknown	gnl\|CDD\|239540
NC_019676.1\|WP_015113595.1\|3238865_3239537_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_019676.1\|WP_015113585.1\|3224867_3225119_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113591.1\|3231359_3232979_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019676.1\|WP_015113599.1\|3244579_3246118_+\|phenylacetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224458
NC_019676.1\|WP_157374022.1\|3220502_3222644_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_019676.1\|WP_015113590.1\|3228361_3229807_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NC_019676.1\|WP_015113589.1\|3227672_3228356_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019676.1\|WP_015113596.1\|3239636_3240467_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_019676.1\|WP_015113598.1\|3242742_3244416_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019676.1\|WP_015113600.1\|3246260_3246899_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_019676.1\|WP_015113597.1\|3240544_3242674_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019676.1\|WP_015113594.1\|3237218_3238043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375402
NC_019676.1\|WP_015113586.1\|3225518_3226136_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113581.1\|3217822_3220396_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|214500

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113600.1\|3246260_3246899_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.2684e-15
NC_019676.1\|WP_044499961.1\|3222648_3223305_-\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	4.24787e-80
NC_019676.1\|WP_015113584.1\|3223402_3224647_-\|bifunctional-sterol-desaturase/short-chain-dehydrogenase	gnl\|CDD\|236016	PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated.	0
NC_019676.1\|WP_015113591.1\|3231359_3232979_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.33682e-23
NC_019676.1\|WP_015113595.1\|3238865_3239537_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.91556e-16
NC_019676.1\|WP_015113593.1\|3235557_3237147_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	1.3598e-57
NC_019676.1\|WP_015113599.1\|3244579_3246118_+\|phenylacetate--CoA-ligase-family-protein	gnl\|CDD\|224458	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].	6.87047e-92
NC_019676.1\|WP_157374022.1\|3220502_3222644_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.88385e-43
NC_019676.1\|WP_015113590.1\|3228361_3229807_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	5.67466e-61
NC_019676.1\|WP_015113589.1\|3227672_3228356_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.42812e-85
NC_019676.1\|WP_015113596.1\|3239636_3240467_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.93564e-75
NC_019676.1\|WP_015113598.1\|3242742_3244416_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.72047e-63
NC_019676.1\|WP_015113597.1\|3240544_3242674_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.24793e-63
NC_019676.1\|WP_015113581.1\|3217822_3220396_+\|PAS-domain-S-box-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	2.83318e-26
NC_019676.1\|WP_015113592.1\|3233272_3235093_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_019676.1\|WP_015113587.1\|3226253_3227021_-\|intradiol-ring-cleavage-dioxygenase	gnl\|CDD\|239540	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.	3.71334e-76
NC_019676.1\|WP_015113594.1\|3237218_3238043_-\|hypothetical-protein	gnl\|CDD\|375402	pfam17882, SBD, OAA-family lectin sugar binding domain. This domain is found in agglutinin family of lectins. Oscillatoria agardhii agglutinin (OAA)- family lectins comprise either one or two homologous domains, with a single domain possessing two glycan binding sites. OAA is one of the lectins with anti-HIV activity. This sugar binding domain is also found in Pseudomonas fluorescens agglutinin (PFA) and myxobacterial hemagglutinin (MBHA), where MBHA contains two sugar-binding domains (i.e. 4 sugar binding sites), whereas OAA and PFA are single-domain proteins (i.e. 2 sugar binding sites).	3.31829e-69

>NC_019676.1|WP_015113590.1|3228361_3229807_+|HAMP-domain-containing-protein
MRSFRFRIALLSATLAGTTLVGFGAVSWFQIYNAKISRLDVELLNQLLRANRSPETEKLPPRPELLPSDFGTNSKTPIALLILDINGQTIREFNSLSVDTEVKGLLIQRLELAPAPPSIPRQRPPVIFGTNQPVKPPPRPIPPQFITEKTAKATWRIGAAKFPNSQVAFAVSLQAVNQEMASIRNIFLISIPGALFLVAVGAWFVSGGALHPIRQLTGVIQQVTVQGLDQRIPSETTDVEFVELIRVFNQMLERLERSFTQASRFSADAAHELKTPLTILQGELERSLQQVEPGSEVQQRLSNLLDEVHRLSGIMRKLLLLSLADAGKMSLYLADVNMSELLLEIVEDVELLAPHLSVQTDIPDNLQVKGDRDLLIQVLQNLLSNAIKYNFADGWIKIQAYQTQKTLKVTIANSSKDILPSDRDRLFERFYRGDPARTRKIEGIGLGLSLAREIVRAHQGELALDSLTSGQTGFILTLPRT
>NC_019676.1|WP_015113589.1|3227672_3228356_+|response-regulator-transcription-factor
MNVLFVEDEAKIANFVRAGLKEQGFVVDYCDNGDDGYLRAMDNEYDAIILDIMVPGKDGLSILKQLRREGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSVGDRQNLLAVGSIKLDRITREVTCNQSAIELTSREFNLLEYLMRSPGRVFTRTQILEHIWGYDFNPNTNVVDVCIQRIRKKIDPIDETNWIESIRGVGYRFRKPDNQS
>NC_019676.1|WP_015113588.1|3227128_3227407_-|hypothetical-protein
MMNIRRVLAVVAIPFVIGTFGFVASNPANAEAPARHNTQITEQPRPNKKPQIKHRQSRPQQKKRPPQINLQNTNDHQDGSDKQNHQESRQRG
>NC_019676.1|WP_015113587.1|3226253_3227021_-|intradiol-ring-cleavage-dioxygenase
MNINNRLLSRREALGLLRAGGTAIFVVGCMPKKSISPQQQVSIATPVSSTTNSANLPGCIVSPQQTEGPYFVDEKLNRSDIRADPVDGSVKAGVPLQLKLHISQVGGSGCTPLADAIVDIWHCDALGVYSDVTDRSFNTVGKKFLRGYQVTDAQGNVQFTTIYPGWYPGRTVHIHFKVRTEGKSGQSYEFTSQLYFDDAMSDRIYTQPPYASKGQRTLKNADDGIFQDGGEQMLLKLTSNRKGYTATFDVGLQIA
>NC_019676.1|WP_015113586.1|3225518_3226136_-|hypothetical-protein
MKLNKAVVVTAISILTGTFGVISLNQVNAANPVYKIAQASPPSEQPPEGQRPPRPDFAAAAQKLGVSEQKLKDALDVPAHPPGQGQGQRPPRPDFAAAAQKLGVSEQKLKDALGVPAHPPGQGQGQRPHRPDFATAAQKLGVSEQKLKDALGVPAHPPGQGQGQRPPRPDFATAAQKLGVSEQKLKDALGVPAHPPEGNRSNTRR
>NC_019676.1|WP_015113585.1|3224867_3225119_-|hypothetical-protein
MNYCPCCSDVLLRHIHGSEITWFCRRCWQDMPVFSGEHSGWFVEVIREEVPSKPELQENIQVRSYISQRRKITGWIGVKEVIG
>NC_019676.1|WP_015113584.1|3223402_3224647_-|bifunctional-sterol-desaturase/short-chain-dehydrogenase
MIKMLAQSWTGIEANIQMNWLLVNTCLQFAAWGVFSLLLAEVLRDSYHALCHKVIWLAKWHNKHHAAYRRDLSIVSLKLYQESQLYHDIVESILLVIILTIAALLGHQWGLWLGVAYAYTFLYGASLRYFQGKIDTDYNHLPGPLEIIPATWWVNRAYHWRHHFDDVNAYYSGVFPLVDKILGTGLSLKGKTIAITGASGTLGQALTGELLKRNAKVLAITTNPEKLATQTKVMVLTWELGNEVQLRDSLEKVDILIINHGVNVYGDRTPQAINSSYEVNTFSALRLMDVFLTTVTGPQDKATKEIWVNTSEAEVSPALSPLYELSKRTLGNIVTLKRLEGNCIIRKLILGPFKSQLNPYGVMSANQVAQFILFLAVRDFRNIVVTINPLTYLLFPFKETSTWLYYRVFSKANS
>NC_019676.1|WP_044499961.1|3222648_3223305_-|DUF1345-domain-containing-protein
MFKNFDARPRLLISAGIAVVILLLLPSLLHLATRILCAWNLGTGCFLSLTLGKMVRATPDKMRRYAQHEYEGRVGIFTLIIIAACVSVLAIGFLLSDKKGISSIILTLHIVLSVITIFSSWLLVHTLFALQYAHNYYHNVSHDSSYEAAGGLDFPDDCDPDYWDFLYFSFVIGMTSQVSDIQITSRSMRRLALIHGVISFFFNTSILAMGINIIASLI
>NC_019676.1|WP_157374022.1|3220502_3222644_+|PAS-domain-S-box-protein
MANLLQKFGTWWKQVFSAPKIDVITAEYQSWRSQFLWQRLRLWLWLAFICLLTFTVRDIYDLFFSLQELAQLPRILRIQGLAINVSMLLSLFTCFSLHKTRFGHRHPGRLFLGTSWSVSFATQLFATIKGFALPDIIGWSLLFLSQAIFMPVRWPLHLISQVSILAYYFIVNTALGLKTLKPEHPEIYNVTFVLYIFWFCIICDLGVYLYDRLQRSEFYTRKELESANRKLIVAEAKYRSIFENAIEGIFQSSPDGRYITANPALAKIYGYSSSEEVTANFTDIENQLYVDPTRRADFVRLIEKYGIISEFESQIYRQDGSIVWISEKAYAVRNSEGKLLYYEGLIEDITQRKKAEEALQEQLDFLQVLIDTIPTPVFYKNTQGLYLGCNKAFETVLGLGKEKILGKSDYELAPKELADQYYHADMTLLEQQQVQTYESFLVFADQTKHDVIFYKATFSKVDGSLGGLVGVILDISELQAALRDRQRTEKALRVFFHAVSHDLRNPVLGTLMVLRNLLENGSDLISLPRSTLERMVQSSDRQLNLINSLMEAHVNEVQGLVLQRKPLQLDTVVIDAIADLEPMLQKNQTNLINLVTADLPLINADSTQIWRVFSNLIGNAIKHNLPGLQITINAIVEGEKIYCTVSDNGVGISPEQSQRMFDLYFRGKNNSYSLGLGLGLYLCKQIVQAHGGEIGVQSALATGSTFWFTLPIS
>NC_019676.1|WP_015113581.1|3217822_3220396_+|PAS-domain-S-box-protein
MPVAWVSKGERVDETLKLLRKLEFPSETITLLEKIAAILPGMIFQFRQQADGSQVVLYISSGCRALCELEPEVIQADWQILYQLIHPQDRSKFTKSILIAFDTLTPWHWEGRIMTPNGELKWIQGACQLEPQANGDILCNGLVIDITNRKQTEANLRTSESRYQAILAAIPDLMFRLSRDGEYLDLKGDGINLTLTKEEIVGKNMRDLLPTDLALIGQETIAKTLDAGTLQTCEYQLPTPLGIRDYEARLVVSGADEVLAIVRDITERKQAETSLRNLAQKFAKAFSCSPDPISITTLKEGRFIEVNDSFMQLSGYKQDEVINKTAFELKIWVNEGDRTQLLQDLQTKGAISNLEFAFRRKSGEVLTTLLSADVIDLNGVPCILAINHDITARKQAEAQIRLTAQRDRLLTETLVRIRSSLDLEQILQTTVSEVRQFLQADRVFIGLNNNQLKAKTVAESVDPQYPSVLGWTPEDKSYLQELKTIFSTHRVRVVEDVSQITVSPKLQAHYQQFQTRATLAVPIMLGEELFGALVANQCSAPRQWQAIEIDLLQQLSEQLAIAIQQAQLYQELAELNTNLERQVEERTAQLQQKMQELEKLQQVKDVVLHTVAHDLRTTVMGNLMVFKNLLQSQGVEPREQREEESSPISLCLSTPLAKSSESASPQSISLPSSIIERMIQGNDRQLAMINSLLEIHCCMEQGVTLNPQRAKLNTLLKQIIPNLQTLLWQNQATLENLVNEDLPLVMADPIQLQTVLFTLLIYSLQHNPPGLKFSLTATVVEKMMRIQLEHNGVTMSKLDGDRLFDLYVREPQASCSTILGLKMYLCRQIIQAHGGEIGVISNRKRGLTFWFTLSVAD
>NC_019676.1|WP_015113591.1|3231359_3232979_-|tetratricopeptide-repeat-protein
MDWITLLRSLQSDFIQRLTSGSLLHCETEGQYSELIIISGERLKILRDFCWLMAEKYKRVSPVRDVFISYLKGKLGEEVVKERLADLITEVDYEKRFGGDGKIDFTLTTNPSVGIEVKSRHGSLDKVRWSVSSEEVEKNAVIVCILIQEEVHEAQSEYHLFLAGFLPTRMIKLKTGRIAFGIEQLLYGSGLRCYLEQYQSTISYNLVKPEDNHKSPSFLSPNNSQLISPKSSVNQAEKLLIYPQENDYIKLGHNCLVKGEYTDAIAHYSQALKLYQNDAEIYYQRGLSYYQLGDYAEAIADYSQAIQINLNDAKFYIKRGLANYQLGDYIAAIDDYTQAIRLNPNMAVAYKNRADARSHLGDNQGAIEDYTQALKINPNYAITYKNRGMSRYFLGYQQSFTKAIKINPQDAIAYKNRGNARADIGDYEGAIDDYTQVIAINPHDAHAYYNRGNARYDMGDNAGAFEDYTQAIKINPNYADAYYNRGNVQSEIGDQQEAIADFQKAVELYRKEGKLDALKDARGRVLDLQIEESLDILNF
>NC_019676.1|WP_015113592.1|3233272_3235093_+|penicillin-binding-protein-2
MAVLHSSPLGGKKNTRTVGRNFQSVFLMLFTLSMLTGIGVRLAYLQIVEGDMHRKRAESNRIRVIAKQPERGNIFDRNGKLLASTRYPRSVYLWPMAHTKPSWPIVGPRLASILDITQADIEKKLDEAGAYSSSLIRIARDLNEAQVTAMKEYENELPEVEVHTEAVRYYPHGTALAHVLGYTRELTAEQLTERKQEGYRLGDVIGQMGVEKAYEKLLRGEWGGQQVEVDGAGRPLRVLGEKQAKAGNDLHLTLDVDIQKAAEKALGDRDGAIVAINPKNGAVLALVSHPTFDPNIFSKQKLTQKDWESVQGEDHPLVNRALSAFPPASTFKIVTTTAGLESGKFSPSTVLQTYGSLTIGGTRFGEWNHAGFGPLGFVGAMQWSSDTFFYQIGRGVGGPTLIEWTRKYGFGQRTGFEFASEETKGLVPDENWKQKAWKIPWTVGDTINMSIGQGALQTTPLQVAIMFAVPANGGYRVQPHLLKDNEDAKSWRESLNMKPTTIKILRDGLRKVVSEGTGKVLNKPTIPPVAGKSGTAEAWKNRVKQNHAWFGAYTPADNPEMLIVAFAEHSGGGGGAIAAPMILEIMQDYYQRKYPGKYQKPEAKKQ
>NC_019676.1|WP_015113593.1|3235557_3237147_+|B12-binding-domain-containing-radical-SAM-protein
MKALLLYPQFPQSFWSYDRFMEIAGLKAVLPPLGIITVAALLPQEWEIRFCDRNVTLETEADWEWCDIVILSAMLVQKPDFHALIQKAVRLGKKVAVGGPYPTSIPQDALDSGAHYLILDEGELTIPQFLTALNQGQEQGIFRSLEKPDVSQSPMPRFDLLKRDAYLMMAIQFSRGCPFNCEFCDIITLYGRKPRTKEPQQTIAELQVLYDLGWRGSLFIVDDNFIGNQRNVKRFLRELIPWMKQHSYPFTFITEASVNLAEDEELLQLMNEAGFYAVFLGIETPDQESLHLTQKVQNTRSPLVQACEKINQAGILIYAGFILGFDGERPGAGEKIQAFVEQTNIPQPMLGILQALPNTALWNRLQKEQRLLESKGIGGTEVGDQNTLMNFIPTRSIDEIAREYVEGLWTLYEPRNYLRRCFQQCLSLGSLAQRKQTMQLSPGKALRLVVQLIWLQGLRQPEIRVQFWQQLWAIILTKPQVLNMYLGLCAAGEHFWEYRVLARQRITQQLGYDPLTASTLPKQEPVLVK
>NC_019676.1|WP_015113594.1|3237218_3238043_-|hypothetical-protein
MTATATISNLYIAQNQWGGSSAPWNPGGAWVIGARSNQRVVALKVTSSDNGKTLNGTMTYAGEGPIGFRGTLTTSDTYKVENQWGGSSAPWNPGGNWILGCRGNQNVVAIDITSNDGGNTLNGTITYAGEGPIGFKSAAANGSVYTVENQWGGASAPWNPGGTWALGCRDNQNVVAINVTSNDGGKTLTGTNTYAGEGPIGFRGNLLGSNNYTVENQWGGASAPWNAGGTWVIGCRAGQNAVAINVTSNDGGKTFTGTMTYAGEGPIGFRATKI
>NC_019676.1|WP_015113595.1|3238865_3239537_-|LuxR-family-transcriptional-regulator
MVALHALFRAIAQAKDEQTLRSHISAEMSQYFTATRCGLFFFHQTHLIDKAILIALSPQYNPVARYLLEHHAPVHEALVVEPKTWKLICPRPDHYHVMAGPIVSTGKLVGALGFTRQQDIPAFDSQNLTDLSAICLHISTWVTMTQAQHPPLQTAGLTSREVEIATLVARGCRNAEISRELWITENSVKQALKRMFRKLEVSSRTQMLAKLSTVAQSQQLPKW
>NC_019676.1|WP_015113596.1|3239636_3240467_+|sulfurtransferase
MTINSDYADPSVLVDTQWLADHLHDSNVRIIEVDVSPEPYKNAHIPGAVFWHIFTDLLLPDFKTNLDAIAFAKLMARSGITNNTTVVAYGNYPGIGGWIFWLLKVFGHDNVRVLNGGYQKWKSENRPLATELSTFPPTDYHTQAPDDSLRVLHPEVQAAINQQERILLDVRTIQEYSGEWFFNQPPKNNQRTGHIPGAVHLEHILTLNEDGTFKSFTELKNLYTSQGITPDKEIFPYCAIGGRSGYTWFVLKYLLGYPNVRNYDGSWNEWSRLTDL
>NC_019676.1|WP_015113597.1|3240544_3242674_-|protein-kinase
MTKFYCSKGHENPTGSRFCLQCGENLQNLPVSNGIQAGLTLSDRYVIVRQIGQGGFGRTYLAEDINRFREPCVLKEFSPQVQTAYVLQKAEELFQREASVLYKLQHPQIPRFRELFRTNLQGKEYLFLVQDYVEGQTYNSLLNTRKQQGLRFTEAEVRQLLQQILPVLEYVHSQDVIHRDISPDNLILRTADQLPILIDFGGVKQVVATVASQYYQPGAAATPAPTLLGKIGFAPSEQMQTGAVSPHSDLYALAVTILVLLTGKQPQELLDNYTLAWKWQQDASVSPMLAQVLNKMLAPRPSDRYQSASQVLHALNPTPIQYPVTQAPVIPQPETSATFAVAPSPAINPTQPRPFSPSPAPIPQAKSRWTTTKTFAATLAVFGVIGVLWLGTNRNRNISGGNDIDPTPTPSVTQPVDVSENYSPEEKQRKEKLSDRRQELGIEQSFYVDLVNQIFWRRNPSLQGRTITNKPEDESLRAAWDKTADELLSKVSVLSNQSRRQLGKYTAADRDRWKAAVNKINVGSRALYDLGDVAFYRIFPEQRGRDFMKEPIGQVWHGFVNDQLSAIVNGNAFAKIVFDIGATSETVSGTLKPGNGKVFIAGLAKGQTLDLNLTASNKVLLSVYSPSGKIRLLEDSTKRTLTAELPEKGYYEFAIASTATTSVDYQLTIAAENPIPVETPTPTPTDKPIETPTPIDTPTETPTPAGTEQ
>NC_019676.1|WP_015113598.1|3242742_3244416_-|serine/threonine-protein-kinase
MQVYCSKQHTNLDSNRFCTTCGETLPLAVGQVVNQRYQIIRQLGQGGFGRTYLAEDKQKAHQVCVLKEFAPQVQAQQDLQKAKELFEREANVLKKLQHSQIPQFHASLQVQIGSKDFFFLVQDYIEGDNYCQLLEQRQTFSEEEIILLLQQILPVLSYIHSKDVVHRDISPDNLIWRRSDNLPVLIDFGGVKQLPASQGFWFTKLAVNHTLLGKKGYAPEEQIRQGKVFLSSDLYSLAVTILVLLTGKEPQKLYDSYQGLWYWGKEIRVSPKLESILKKMLAYKPSDRYQTAEQVLKDLPSPAVTKPSNPYITKLKTQIVSPGQKRANAIVSRIHQRTQAVSRVLPVPMWLRPFAVSMLGTAIVGLTVAGTLAAVNAVVRGITSITIPSISLPTMPSLPNPLAQPVSNKGNGDVLARRQELEISEVFFIRMVDALFYSQKPEMQGRTITSKSEDKALRDEWLRIGDGLLDKLEQAELSAAARKKMGSYSQKDYERWRLQARTGKLGDYTMSQLNKETNQKFAELFPGKQGEKQNQQTYGQIWYAIAADKVSKIQSNN
>NC_019676.1|WP_015113599.1|3244579_3246118_+|phenylacetate--CoA-ligase-family-protein
MNANSQQQRSIKAFEDFISTPIETLLQRHCNTASSPTVLTLFHDVAANVPAYKAFLAEREINPDIIQTLEDFQQLPAIAKENYIQRYPLPDLCRNGQLAECDMIAASSGSTGKPTFWPRFFTDELQIATRFEQIFHDSFFTDTRRTLAVICFTLGTWVGGMFTTNCCRYLASKGYPLTVITPGNNKEEILRVVQELGVNFEQVVLLGYPPFLKDVIDIGISRGVEWSQYHIKLVMAGEVFSEEWRSLVGERIGSQNPCYDFASLYGTADAGVLGNETPLSICIRRFLAKNPDAARTLFGESRLPTLVQYDPTSRFFEAQNNSLLFSGDNGIPLVRYDILDTGGIITYDAMLEFLAEWKFNPLEALGSDTNNSALSTQHSPRGIHPLPFVYVFGRSNFTVSYFGANIYPENVSVGLEQPAVQAWVTGKFVLQVKEDADKNRFLSVVVELAPGVEGSEDKRQAITESILAQMLRLNGEFANYVPPEYQTPQVALAATGDREYFPIGVKHRYTRK
>NC_019676.1|WP_015113600.1|3246260_3246899_+|TetR/AcrR-family-transcriptional-regulator
MTKNIRSSTLTRTRLIAAASQVFASLGVQGATTRQIARVAGVNEVTLFRHFASKEQLLKAVIENALALQIEALAHPEIWTQNLRVDLRRYAKLYNSMLEAQEDLIRTFIGEAKRHPEAAKQVIQEAVQPLSEKLIAYLQSCQKNGTVRPEFDPVPAVDMFTGMLLAGMLCHNAKLKNKNYSCDEYIDTCVDIFVRGISLAPVQVLSTGSTHN

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Crispr_ID: NC_019676_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_8

3300503-3301032

TypeIII

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CRT
TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	PILER-CR
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CRISPRCasFinder

7 spacers

csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas6,cas2,cas1

The CRISPR arrays of NC_019676_8

>merge|NC_019676|8|3300503-3301032|CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
ATTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAGAAAACGTAAGGCACATGAACGCGATTATTCAAAGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACCCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCGGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAAGCCGGTTAAGACATAATTTTTAGCCCCCCGTGAGGGGTAATTAATTGAAAACCGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACTGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACCATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATAGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|8|6|3300503-3300756|CRISPRCasFinder
ATTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAAAACGTAAGGCACATGAACGCGATTATTCAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAAGCCGGTTAAGACATAATTTTTAGCCCCCCGTGAGGGGTAATTAATTGAAAACCGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATA


>NC_019676|8|5|3300503-3301032|CRT
ATTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAAAACGTAAGGCACATGAACGCGATTATTCAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAGCCGGTTAAGACATAAT
TTTTAGCCCCCCGTGAGGGGTAATTAATTGAAAAC	CGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|8|3|3300504-3301032|PILER-CR
TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAAAACGTAAGGCACATGAACGCGATTATTCAAAG
TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTTG
TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCGG
TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAGCCGGTTAAGACATAATTTTTAGCC
CCCCGTGAGGGGTAATTAATTGAAAACCGGGTCT	AAAGGGTATGCGTTACGTTTCCTGATAGAGTTGTTTCCAT
CCCCGTGAGGGGTAATTAATTGAAAACTGCAACC	CCCAGATCCCATTCAGCCGGGATTAAACTTTGTTTCCAT
CCCCGTGAGGGGTAATTAATTGAAAACCATGCGT	GAGCTGTTCGAGTTGGCTTATCAACTGACTCATAGTTTCCAT
CCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|8|7|3300849-3301032|CRISPRCasFinder
	AGAAAACGTAAGGCACATGAACGCGATTATTCAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAAGCCGGTTAAGACATAATTTTTAGCCCCCCGTGAGGGGTAATTAATTGAAAACCGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113643.1\|3298505_3299159_+\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	unknown
NC_019676.1\|WP_015113648.1\|3302950_3303256_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_015113641.1\|3296925_3297381_+\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_019676.1\|WP_157374025.1\|3310759_3310897_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113637.1\|3293240_3294518_+\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019676.1\|WP_015113636.1\|3292530_3293244_+\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019676.1\|WP_015113646.1\|3301327_3302443_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019676.1\|WP_015113638.1\|3294514_3295024_+\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown
NC_019676.1\|WP_015113645.1\|3300101_3300440_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_019676.1\|WP_015113649.1\|3303348_3303618_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113640.1\|3295951_3296929_+\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019676.1\|WP_015113647.1\|3302598_3302829_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113642.1\|3297392_3298481_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_019676.1\|WP_015113639.1\|3295029_3295941_+\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_019676.1\|WP_157374226.1\|3310462_3310738_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113644.1\|3299174_3299987_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019676.1\|WP_015113643.1\|3298505_3299159_+\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	3.4e-77	253.4	6.1
NC_019676.1\|WP_015113641.1\|3296925_3297381_+\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	3.9e-73	238.9	0.2
NC_019676.1\|WP_015113637.1\|3293240_3294518_+\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	3e-137	452.8	0.0
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.7e-97	321.0	0.0
NC_019676.1\|WP_015113636.1\|3292530_3293244_+\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	8e-37	121.7	0.0
NC_019676.1\|WP_015113646.1\|3301327_3302443_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	4.3e-52	171.9	0.0
NC_019676.1\|WP_015113639.1\|3295029_3295941_+\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.5e-70	231.7	0.0
NC_019676.1\|WP_015113640.1\|3295951_3296929_+\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	8.6e-54	177.3	0.0
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.4e-29	96.9	0.6
NC_019676.1\|WP_015113642.1\|3297392_3298481_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	2.2e-40	133.9	0.1
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-50	166.5	4.3
NC_019676.1\|WP_015113638.1\|3294514_3295024_+\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	1.6e-64	211.0	1.1

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113645.1\|3300101_3300440_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	2.10242e-57
NC_019676.1\|WP_015113636.1\|3292530_3293244_+\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.48726e-47
NC_019676.1\|WP_015113640.1\|3295951_3296929_+\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.17084e-42
NC_019676.1\|WP_015113637.1\|3293240_3294518_+\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	2.50971e-134
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.6991e-29
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.02393e-117
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00302278
NC_019676.1\|WP_015113642.1\|3297392_3298481_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	5.81216e-19
NC_019676.1\|WP_015113646.1\|3301327_3302443_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.2748e-38
NC_019676.1\|WP_015113639.1\|3295029_3295941_+\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.0014e-73
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.78489e-72

>NC_019676.1|WP_015113645.1|3300101_3300440_-|XisI-protein
MDKLEQYRQSIQEILAKHSKYKPQREEIENELIFDTMHDHYQLMRIGWNGLSRVYHTVIHFDIKNDKIWIQQNMTDVDLAQELLEMGVQKEDIVLGLQPPYKRPYTGYGVVV
>NC_019676.1|WP_015113644.1|3299174_3299987_-|hypothetical-protein
MDWLPTIDLSHLWDLVIAQTPTPTVTPSPIVSPAKNINDIELLKSQLEFLKTTNGQLGESFNRFVAAMQFTLVVFAFLGGVVVFVFGNNLKSAKEVATQAIQQEIDNHIARLVKKEVRNVKRTLQRERVISSTTVDYYLPSSDGETNEYKLLVAREFKNVKFWNKTTIPQKFLADVCVLDLENSVDTAGKKFSELPPGDKREETAKRIIDEFIQILPQTATLVIYVAPPAIKAINNATFKGRYYAPANTAITLVGMVADAAYVAHGQNNL
>NC_019676.1|WP_015113643.1|3298505_3299159_+|hypothetical-protein
MQPKQSLSEDQMWNTAHNIAKMLVQEQQRIEASKDGIRSQLGKVIAYLRATISQNPSDNSERFFKYLKTLADSSKSVKQTDRTPDYCRSINKACNDYLKNIEANPKDILEILGWTFRLFNYYKVTPLEDFEKLSLSNRQMEIQTVAKSQKLQKGDEIEANITKISGNKVTYQLLNIFSKTVREAKHYTSLQIGQTVIVEITEIEDGVPKKIKYIKHK
>NC_019676.1|WP_015113642.1|3297392_3298481_+|hypothetical-protein
MPKNYDFVPLPQQKPDRVNIQGKEGKDKFGHDKYQLNTQRFSGKLFLDLTVVSPLTVNSGITVMGSDLAQQTLDPTSAKYVATISLIQSSVQQNQRLIIPGSSLKGVVRSIYEAITRSCLCKTNAKVPDGYSECKDISQLCPACVTFGAMSWLGLVHFHDAKYDPDNDKPGFQTGLITPLFSPKPEAVDLETGEKIYYDKNNKIRGRKFYPHSYQEEVKPTIRIQQAETGKKFTTYVNYANVTKPQLGTLLIALGQDPENRLGLKIGSGKAVGMGTMRIDVVRIEQLNINRYLSYNSNSSALEGNKLQTFILDAIKSAKPQPQATPAKNQLNKPVVKSANQPLVQLKQLEKIKALLGLTKNA
>NC_019676.1|WP_015113641.1|3296925_3297381_+|hypothetical-protein
MSFVGYKQASSPAELRKLLQDYYQQPSYYFLRWSHQVSGIKADLPANFPSPEGQMFNTELELRWKQNNEGYQVLFLGRNQPKLESKFNPIGKDWITSDRKAHFYDKDETKFPKGFTYPEKLALALGQRYFQDAQTSTIHFVALTVCKNIKL
>NC_019676.1|WP_015113640.1|3295951_3296929_+|hypothetical-protein
MHKRLVNHCTIDFSIIPVEPILIKSGKEGADPTKPNMEFVETYHAGGRSVYLPGSSLKGAIRAHAERIVRTVGSDKRPTLDPKSDKFELWADDPLKNENSEYYKKLPPAEIYKQSSFTDQIFGNTSIASRIRIQDAYPTTSIPLKIEERNGVAIDRVFGSAVRGALFNYEVCTSGDFRTKIHLKNFSLAHLGLIGLVLRDLDDGWFGIGFAKSRGMGTVKLQYHSAVVQYPGCELRDDRIYAIGKDLNWSNKFLLGAGEFLPGKDENPYKFPVDDKQDTIITAAEMSYGFGVQLTWKGEDERGVPDLFERAVRQWRELLPKGVSA
>NC_019676.1|WP_015113639.1|3295029_3295941_+|CRISPR-associated-RAMP-protein
MFDTFKNRLEITGKLSSVTALRISAGRSTEPIGADLPVIKDALEQPFIPGSSFKGALRSRLESFLRGIDTSLAANPAIEAEWSITNERMNGKTGIKVEVENELKNYPENERAARRDIILTDKILYETDLISHLFGSSWIASKFQVRDLTIVPGTWFGQYQERDGVAIDRDTETAAEGKLYNFQVVPSGTSFDLKIVVENAEKWELGLLMIGLHQFESEQIPLGGGRSRGLGVVNLKIDKMQWFETENDAEKLLNYLQNQVTGNMSNYQYGEEKIEILKKEWTQALIWYLRCLIPGTSVTQTST
>NC_019676.1|WP_015113638.1|3294514_3295024_+|hypothetical-protein
MTQILDPQVALKVQKAIYQAEDDLVIAIETALDNCEYIKTGDKKLEESQFNNLLRVADTTDSPEVIKNFICYQVGRDEKWGRGRNSLAAKIIQDIDIYLKTRANQIVTDNPGADLKYIWIQLIRRYIGYGSRYLKYLNEVKKNSNSSVVNPRNVEGNRDTADTSNKNGN
>NC_019676.1|WP_015113637.1|3293240_3294518_+|CRISPR-associated-RAMP-protein-Csx10
MTRLELTITALSPLAPGRQKPGGSVSEVENYISGSVLRGAIASQILQLSGQHSANLAEDGGNFQTLFLGENPAIFGNAYPAVAKIDDKSIVVNQPIKVLPATAVSSKTNPGFTSSRGGHGVFDTLIDAFCAAAYNQPYDPSDPKAIAQGTNPQVETYNSFYSKVKDKYYSHDATSRFLTRVGINRRRATAEEEILYSVQVLNESFLKNTKTDEWDKVVFRSFVVVPNESLAEALQRFIENNSCIFRIGGSASRGLGKVEIKVSKGQSPAKSIKSRIDEFNEALKTRWKLWSIFCQPQHDLLTGRTYFTLDLQSDAILTENWQRTTVVSAEMLKDFAKVDSSLEMHLAYSSYEYRSGWNSAWGLMKDVELVTTKGSVYLFSTTEPEKWYTALEDLENKGIGDRTCEGFGQVEVCNEFHQIFREDAK
>NC_019676.1|WP_015113636.1|3292530_3293244_+|hypothetical-protein
MIYLDSLSAVETDTIQLKAVIDTALCVGAGGSSGSLADKPIVRNAQGQLIIPGSQLKGRLRHECEKLARSLGWQIFSAPSATSLCPTEEQVSSQFRNDYQIEGYKGYHCFVSQIFGDPILPSRVIVDDLICSFAAGDLEEVLRPGVTINRRRRTAEEKKLYLLETSPVNTQLSFIGEIHLLPNHPNYAKPLIVAALHHIHALGGSKSAGLGWLHWEGLPQISSDDPVWSSLLPKAES
>NC_019676.1|WP_015113646.1|3301327_3302443_-|CRISPR-associated-endoribonuclease-Cas6
MPRRSQKKVDTSLSQLIWPQDTELLALEFELVPAKDYDLFPQYTIGLHAWFLEQVRSQDPELSAYLHDGESEKPFTISALNGDITSSGRQIKLSANTSYRWYLTALSSRVQQWMVQWVGNLPEVLDLKNAPLQIRSVSIAHSPTTYAELLESEHSETIALKFLSPTSFRRKGHHFPLPVPVNVFHSYLRRWNDFSGMSFDQDAFLAWVDDHVLITRCQLTTAKVLAGKKGAVTGFTGAIEFALTKDAAKQPEFEQLFFALGKLAPYCGTGHKTTFGLGQTRLGWSSQVVQDLPDVQTVLAKRIEDLTQIFKARRKRTGGERADEIASKWATILARREMGESLQVVAEDLEMPYETVKTYVKLARRALKTEE
>NC_019676.1|WP_015113647.1|3302598_3302829_-|hypothetical-protein
MTYFQQLHPWCIIRILSNKQLSDNAGDISNVVARFRRRDDAVAYLQMLQHSSKNIKFLIIFDVQGVRNLPKNEALS
>NC_019676.1|WP_015113648.1|3302950_3303256_-|hypothetical-protein
MSNLRRITTREQRLIFLYSNWNFGMTPTEFYAKWAVSYELIALICSRSDSTVRGWFRNGSNRRYPTHNDLLHLALMDFLLEHFEEIPEQVLHWLGFNHHDS
>NC_019676.1|WP_015113649.1|3303348_3303618_-|hypothetical-protein
MHIQAVKFRLIFAAKAQKQLDLLSPKDRKQYDKAFECFANNGAAYRSLRTHRYRCKDGEFWSSSASMAKRFYWRYTEEQSIIIMYLDSH
>NC_019676.1|WP_015113650.1|3303746_3304025_-|CRISPR-associated-endonuclease-Cas2
MFYLVCYDIVSDTRRNKVAKLLESYGLRVQKSVFECVLDEKQYESLSKYLFRLVNKREDQVRFYPMSAHNRCKVAVLGTQPEFVVDDAAFIV
>NC_019676.1|WP_015113651.1|3304024_3305065_-|CRISPR-associated-endonuclease-Cas1
MSTIYITEQDVTFQIQHQYLKVFYQQTQRICIPIRNLSQFIIFGNINLPKEVIQIVRSHNIPVLYLTQTGEYLGRLENPSQRQAKYLTYQHRRAQDKEFNRATAESIIWAKLHNQHTFLQNWTRHYTNYIIQRALNYLTLLMDNLSVAPGIEELHEYSEEADNIYYCALTALLSFYNGSPYINSKRISGLIDLGNQLLHQYIYTLLNTVGLDPNYAILHRNNHNELPLAWDFTAEFRTLMVDDLVLNFIRNLANTNGNGNGKSHSHKLLQKFLQHWEGKLRTFVLHPYAGEISYRQCLDLQVREYLASLLGDVEFYRPLALKFHPANSDFTNTIKPQTVPLKLVKR
>NC_019676.1|WP_015113652.1|3305425_3305662_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKQITLAELPETVQNLINQAQKTGEPLTIIQNGVPFAIISPIQKKSLLQTLSTLEPLDEDFADVDEGLLPLDDIEFSK
>NC_019676.1|WP_015113654.1|3308169_3310188_-|CRISPR-associated-endonuclease-Cas1
MFTQEHLHFAWLQVCAGSKTAGVDGISVELFESMATEQLQNLVYQLNNETYTASPAKGFYIPKKNGDKRLVGIPTVRDRIIQRLLLDELYFPLEGTFLDCSYAYRPGHNILQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTFLEKLSLEPSVLQLIEQQLQSGMIIAGQYRNFGKGVLQGGILSGALANLYLTNFDKKCLSQGINLVRYGDDFVIACNSWQEANRILDKITVWLGEVYLTLQSEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPKPVLKGEWVINDSGNPYFRTKPRPKKPVSHPPKACSIDKPINFPRASLSHYWQETMTTLYITDQGAYLSVKNQQFQVYYQGQLRIKVPVSRVSNVVLFGCCNVSHGAVSMALRRRISIMYLSQKGRYFGRLQVSGDAKVEYLMLQVERCQNPEFTRTLAEVIVTAKIHNSRILLMRLKRRKSSEFDDNLVKEAIKDLDILMDKLPFAESMDALRGYEGRAATVYFQALGSLFSGAFKFEKRTKRPPTDPVNSLLSLGYTLLSHNIFSFIQAVGLHSHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSNIFTEDDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSELTHPNTGYKVSFRRCLELQVREYVACLTGEVKIYRPMIWKP
>NC_019676.1|WP_157374226.1|3310462_3310738_-|hypothetical-protein
MAQLLKFAQFPLVQFLRQNFHFPTPKQIPQQPFPHREPIKHLLIGSPKAVTSTIHYLQVIGYASVGDWSPLQATGNPDEVMSILSRQILMQ
>NC_019676.1|WP_157374025.1|3310759_3310897_+|hypothetical-protein
MRGIKAIALFLPESDDRFYLLWGLDKGGCFVLWGRKRSPLSCLLY

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Crispr_ID: NC_019676_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_9

3306039-3307844

TypeIII

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CRT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	PILER-CR
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CRISPRCasFinder

24 spacers

cas1,cas2,cas6,csx21

The CRISPR arrays of NC_019676_9

>merge|NC_019676|9|3306039-3307844|CRT,PILER-CR,CRISPRCasFinder
AAAAGTAGAAAACTGGCTCAAACCTGATTTAAAACCCTAACTATTTCAGCTCATTTGTTTCAGAGTATGGCAAAACGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACGGAGATTTGCAAAAAATAAAAAACGCTATGTCAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCCGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACAAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTCTTTGTATTAGGATCACTAGCATACTTCCACCATGAGGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAATGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGCGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATCGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACAATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCCGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACAATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGTGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTTGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACGATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATTGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACAATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACGGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACGATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAGGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACGAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTAGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTATGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACTTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATGGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAACCACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTGGTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC

>NC_019676|9|6|3306039-3307844|CRT
AAAAGTAGAAAACTGGCTCAAACCTGATTTAAAAC	CCTAACTATTTCAGCTCATTTGTTTCAGAGTATGGCAAAAC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GGAGATTTGCAAAAAATAAAAAACGCTATGTCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTTTGTATTAGGATCACTAGCATACTTCCACCATGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC

>NC_019676|9|4|3306115-3307844|PILER-CR
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GGAGATTTGCAAAAAATAAAAAACGCTATGTCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTTTGTATTAGGATCACTAGCATACTTCCACCATGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC

>NC_019676|9|8|3306115-3307844|CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GGAGATTTGCAAAAAATAAAAAACGCTATGTCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTTTGTATTAGGATCACTAGCATACTTCCACCATGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCC
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	AATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	GAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTA
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	ATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTAT
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	TTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC	CACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTG
GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113643.1\|3298505_3299159_+\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	unknown
NC_019676.1\|WP_015113645.1\|3300101_3300440_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_019676.1\|WP_015113660.1\|3319131_3321615_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_019676.1\|WP_157374025.1\|3310759_3310897_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019676.1\|WP_015113656.1\|3311025_3311769_+\|DUF4384-domain-containing-protein	unknown	unknown	gnl\|CDD\|379557
NC_019676.1\|WP_015113646.1\|3301327_3302443_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019676.1\|WP_015113661.1\|3321834_3322332_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_019676.1\|WP_015113648.1\|3302950_3303256_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113649.1\|3303348_3303618_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044499980.1\|3318678_3318984_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225112
NC_019676.1\|WP_157374028.1\|3317904_3318045_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019676.1\|WP_015113647.1\|3302598_3302829_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113659.1\|3318013_3318499_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NC_019676.1\|WP_015113657.1\|3314099_3317876_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_157374226.1\|3310462_3310738_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113644.1\|3299174_3299987_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113660.1\|3319131_3321615_+\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.94503e-63
NC_019676.1\|WP_015113656.1\|3311025_3311769_+\|DUF4384-domain-containing-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	7.7867e-20
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.02393e-117
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00302278
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.6991e-29
NC_019676.1\|WP_015113646.1\|3301327_3302443_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.2748e-38
NC_019676.1\|WP_015113661.1\|3321834_3322332_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.43783e-69
NC_019676.1\|WP_015113645.1\|3300101_3300440_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	2.10242e-57
NC_019676.1\|WP_044499980.1\|3318678_3318984_+\|PAS-domain-containing-protein	gnl\|CDD\|225112	COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms].	0.00595349
NC_019676.1\|WP_015113659.1\|3318013_3318499_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	1.28899e-58
NC_019676.1\|WP_015113657.1\|3314099_3317876_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	3.65627e-50
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.78489e-72

>NC_019676.1|WP_015113652.1|3305425_3305662_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKQITLAELPETVQNLINQAQKTGEPLTIIQNGVPFAIISPIQKKSLLQTLSTLEPLDEDFADVDEGLLPLDDIEFSK
>NC_019676.1|WP_015113651.1|3304024_3305065_-|CRISPR-associated-endonuclease-Cas1
MSTIYITEQDVTFQIQHQYLKVFYQQTQRICIPIRNLSQFIIFGNINLPKEVIQIVRSHNIPVLYLTQTGEYLGRLENPSQRQAKYLTYQHRRAQDKEFNRATAESIIWAKLHNQHTFLQNWTRHYTNYIIQRALNYLTLLMDNLSVAPGIEELHEYSEEADNIYYCALTALLSFYNGSPYINSKRISGLIDLGNQLLHQYIYTLLNTVGLDPNYAILHRNNHNELPLAWDFTAEFRTLMVDDLVLNFIRNLANTNGNGNGKSHSHKLLQKFLQHWEGKLRTFVLHPYAGEISYRQCLDLQVREYLASLLGDVEFYRPLALKFHPANSDFTNTIKPQTVPLKLVKR
>NC_019676.1|WP_015113650.1|3303746_3304025_-|CRISPR-associated-endonuclease-Cas2
MFYLVCYDIVSDTRRNKVAKLLESYGLRVQKSVFECVLDEKQYESLSKYLFRLVNKREDQVRFYPMSAHNRCKVAVLGTQPEFVVDDAAFIV
>NC_019676.1|WP_015113649.1|3303348_3303618_-|hypothetical-protein
MHIQAVKFRLIFAAKAQKQLDLLSPKDRKQYDKAFECFANNGAAYRSLRTHRYRCKDGEFWSSSASMAKRFYWRYTEEQSIIIMYLDSH
>NC_019676.1|WP_015113648.1|3302950_3303256_-|hypothetical-protein
MSNLRRITTREQRLIFLYSNWNFGMTPTEFYAKWAVSYELIALICSRSDSTVRGWFRNGSNRRYPTHNDLLHLALMDFLLEHFEEIPEQVLHWLGFNHHDS
>NC_019676.1|WP_015113647.1|3302598_3302829_-|hypothetical-protein
MTYFQQLHPWCIIRILSNKQLSDNAGDISNVVARFRRRDDAVAYLQMLQHSSKNIKFLIIFDVQGVRNLPKNEALS
>NC_019676.1|WP_015113646.1|3301327_3302443_-|CRISPR-associated-endoribonuclease-Cas6
MPRRSQKKVDTSLSQLIWPQDTELLALEFELVPAKDYDLFPQYTIGLHAWFLEQVRSQDPELSAYLHDGESEKPFTISALNGDITSSGRQIKLSANTSYRWYLTALSSRVQQWMVQWVGNLPEVLDLKNAPLQIRSVSIAHSPTTYAELLESEHSETIALKFLSPTSFRRKGHHFPLPVPVNVFHSYLRRWNDFSGMSFDQDAFLAWVDDHVLITRCQLTTAKVLAGKKGAVTGFTGAIEFALTKDAAKQPEFEQLFFALGKLAPYCGTGHKTTFGLGQTRLGWSSQVVQDLPDVQTVLAKRIEDLTQIFKARRKRTGGERADEIASKWATILARREMGESLQVVAEDLEMPYETVKTYVKLARRALKTEE
>NC_019676.1|WP_015113645.1|3300101_3300440_-|XisI-protein
MDKLEQYRQSIQEILAKHSKYKPQREEIENELIFDTMHDHYQLMRIGWNGLSRVYHTVIHFDIKNDKIWIQQNMTDVDLAQELLEMGVQKEDIVLGLQPPYKRPYTGYGVVV
>NC_019676.1|WP_015113644.1|3299174_3299987_-|hypothetical-protein
MDWLPTIDLSHLWDLVIAQTPTPTVTPSPIVSPAKNINDIELLKSQLEFLKTTNGQLGESFNRFVAAMQFTLVVFAFLGGVVVFVFGNNLKSAKEVATQAIQQEIDNHIARLVKKEVRNVKRTLQRERVISSTTVDYYLPSSDGETNEYKLLVAREFKNVKFWNKTTIPQKFLADVCVLDLENSVDTAGKKFSELPPGDKREETAKRIIDEFIQILPQTATLVIYVAPPAIKAINNATFKGRYYAPANTAITLVGMVADAAYVAHGQNNL
>NC_019676.1|WP_015113643.1|3298505_3299159_+|hypothetical-protein
MQPKQSLSEDQMWNTAHNIAKMLVQEQQRIEASKDGIRSQLGKVIAYLRATISQNPSDNSERFFKYLKTLADSSKSVKQTDRTPDYCRSINKACNDYLKNIEANPKDILEILGWTFRLFNYYKVTPLEDFEKLSLSNRQMEIQTVAKSQKLQKGDEIEANITKISGNKVTYQLLNIFSKTVREAKHYTSLQIGQTVIVEITEIEDGVPKKIKYIKHK
>NC_019676.1|WP_015113654.1|3308169_3310188_-|CRISPR-associated-endonuclease-Cas1
MFTQEHLHFAWLQVCAGSKTAGVDGISVELFESMATEQLQNLVYQLNNETYTASPAKGFYIPKKNGDKRLVGIPTVRDRIIQRLLLDELYFPLEGTFLDCSYAYRPGHNILQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTFLEKLSLEPSVLQLIEQQLQSGMIIAGQYRNFGKGVLQGGILSGALANLYLTNFDKKCLSQGINLVRYGDDFVIACNSWQEANRILDKITVWLGEVYLTLQSEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPKPVLKGEWVINDSGNPYFRTKPRPKKPVSHPPKACSIDKPINFPRASLSHYWQETMTTLYITDQGAYLSVKNQQFQVYYQGQLRIKVPVSRVSNVVLFGCCNVSHGAVSMALRRRISIMYLSQKGRYFGRLQVSGDAKVEYLMLQVERCQNPEFTRTLAEVIVTAKIHNSRILLMRLKRRKSSEFDDNLVKEAIKDLDILMDKLPFAESMDALRGYEGRAATVYFQALGSLFSGAFKFEKRTKRPPTDPVNSLLSLGYTLLSHNIFSFIQAVGLHSHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSNIFTEDDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSELTHPNTGYKVSFRRCLELQVREYVACLTGEVKIYRPMIWKP
>NC_019676.1|WP_157374226.1|3310462_3310738_-|hypothetical-protein
MAQLLKFAQFPLVQFLRQNFHFPTPKQIPQQPFPHREPIKHLLIGSPKAVTSTIHYLQVIGYASVGDWSPLQATGNPDEVMSILSRQILMQ
>NC_019676.1|WP_157374025.1|3310759_3310897_+|hypothetical-protein
MRGIKAIALFLPESDDRFYLLWGLDKGGCFVLWGRKRSPLSCLLY
>NC_019676.1|WP_015113656.1|3311025_3311769_+|DUF4384-domain-containing-protein
MSRTLVASPEGVQLARKALKAKNLTQTDFAIEVRLGYSTVSNFFNTKPIYRTNFQEICVFLGLDWKDIAVFGDIETEELSPLDKLWQQLQSLGSPTEQMGLVLVKEETLGWGTRIPSRYETSVQIGSYIQVEINLSTPGYLLLLQKDTSGQMWCFCPSCFAQQPHLDTGKTSLPQPGSPMNAFPVEGTPGKEEIIAIITKEVPQLDWLTQDNDEVLELEASHLTELLNYVHEHEESQLWYTDYMVSA
>NC_019676.1|WP_015113657.1|3314099_3317876_+|tetratricopeptide-repeat-protein
MKKLIKQLNQLNLQVVELAGQGNLEQALIVAQQAVNLGKNQQLTENPEYCDSLNNLAELYRMQGRYLLAQPLYLQTLTLRKNILGSEHPDVAQSLNNLAALYHAQGNYIEAEKLFLEALELWKDIFGEEHFQIATNLNNLAEIYREQGKYFQAEQVHLEVLAMRKRLFGESHPDIVQTLNNLANIYTSQGHYADAEQMHLKTLAMKQSLFGESHPEIAVSLNNLAALYDSQGRYLEAEATFHEILTKLPKILPNEHPYIATILNNLASNYKEQGRYRESEQKYLEALAMRKRLLGNQHPDVAASLSNLADVYVSQGRYLEAEQIYLEAHGMRKQLFTSEHPDIAESLRNIAVVYTYQGRYLEAEQQYLEVLPMLEKLLGKEHPVIADNLINLAALYEEQGRYAEAEQKYLIALEIQRNILGLEHPEIAHTFNQIAVLYRLQGRYAESEKLHLECLAMAKRLLGEQHPFVAVVLNNLAVLYDDLNQYSQAESLFLEALAIVKTAFGNEHPQVATTMNNLAVIYDFQGRYQEAEQLHLETLNLRKSLLGEEHPKVSISLNNLGELYFSLGRFAQAEQKYVETLAMRKRLLGEEHPDVAFSMNNLATVLAATNRPDEALAYRIAASKIEDKIIRNIFAFSSESDRLSFLDKIRNNFDLFLSLVYQHLSNSDNAKLAALDFILKRKGLTASALAAQNQALYSGRYPQLQEKFRQLSDLNTRLVHLTFSVPQTDDTSTTEKTLHQLRTYRENLTRLQAQYNYLQKQLALQVPEIQLSEETFDRQTIAAALPPDSILVEFVRFDVFDFQAIAANGATQWYPARYLAFILKAGQPDAVQMLDLGIAATIDEVIQVFRLQASDYHQPTLALRKTPNKPKLHIQSYDSTAAIQLSQLLFAPIRDCVKDCRHLIVAPDGNLNLVPFQILPVDNTGTRLLMNEYTISYLSVGREILHSKVQKPKPSISAPLIIADPDFDLTAESATNLASKAETKIKPPIPETTLRRAVGTRFLGESVAKKLLDAKLYLGTEALESRLVNSDCPNIMLIATHGLFLSNSETKPSDRQRTFLSIERLRTTKAENPMMRSGLALAGANTWLCGGTLPPNAGKGFVFAQDIASLDLWNNELTVLSACDTARGDIKIGEGVFGLRRAFAVAGSQTLVMSLWPVPDRVTAFLMERFFDNLQSGIGRAEALHQAQNYVRTITVKELRQSALGVEVLKELLRAKEVSADSQIDCQEEDTPLQHPFYWGAWICQGNTEPLTVRAVFS
>NC_019676.1|WP_157374028.1|3317904_3318045_-|hypothetical-protein
MLANSQEKIVKIAEVFAYARVLSREQAHNLVAIADNTKVLLYPKLT
>NC_019676.1|WP_015113659.1|3318013_3318499_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MTNTFTAPVKPRIEDSFAITFAPLSLEEIYAKADASANGAVVVMSGMVRNNTDGQPVVALEYQAYEPMAMQVFYQIAAEIRTFWTEINRVVIHHRIGRLQVGEISVLIAIGCPHRGEAFEACRYAIDTLKHNAPIWKKEHWQNGSSTWVSIGACEQSGENC
>NC_019676.1|WP_044499980.1|3318678_3318984_+|PAS-domain-containing-protein
MSATISVIAASSSGRSPFAHIVEDISDRQQAETQLRRKETLLHSMNSVSPQAFYVVDKYTDNILYFNDRFCEIWGIVHLKELMEYQQLFHQDIQLPNNSCE
>NC_019676.1|WP_015113660.1|3319131_3321615_+|PAS-domain-containing-protein
MTNQDSALILIVDDDDVTRIHLRQLMEHAGYRVVEARNGCEAIGVYTDLHPDMVLLDAIMPVMNGFTCCAQLQTFPDIQDTPILMITAAYEPADVERAFAVGAIDYITKPIQWLVLSHRICHLLAASRAIKQLRQQNQQAQLREAQIKIALEAARMGTWDWDIITNKITWSDNKEALFGLKPGSFDGKYETFLNCIHPQDRHFVNISITQAVQTDTECDVEFRIVLPDLSIRWLVSKGVVFRNAAGEAARMFGIVVDITKRKQAEAELRQSEERFQIITRATNDVIWDWDLLTNQVWWNQGVQTLFGYSLSQLNADLSWWYERIHPEDQPRIESDMWDAMNRAQQFWSNEYRFRCYDNSYADILDRAYIIYDQTGKPVRMIGAMMDITERKRVQAQLQWQNLRSQLFADITLKIRQSLQIDEILQTSVTEVQKLLHADRVLILQLRSNGKAITLKEAVVSGLATASDLEIINRATFDPMCLAKYAQGTIKVISNIDQEQANISIAYLQILQQLRVKAQISVPIFLQNQIWGLLVAHECAHPRQWNNWEIELFQQLADQIGIALAQSQILETETRQRQELSRSNEELQQFAFIASHDLQEPLRKIKTFSERLISNCGDALPAPASDYLERMQNAVVRMQTLIEDLLTLSRVTTRAQPSISVNLAQITQEVLSDLEVLIQQTGATIEVGDLPTIPADPLQMRQLMQNLIGNALKFHRPQMTPIVKIYSQYFHNQSDQFVVGLELCQIIIEDNGIGFEQKYSDRIFQIFQRLHGRQEYEGTGIGLTICRKIVERHFGKITAESKPGQGTKFFVTLPMNFPTEFLFLERDY
>NC_019676.1|WP_015113661.1|3321834_3322332_+|response-regulator
MKGRQPTVTILMADDDEDDSMLIREAITVSQLPIDLHAVSNGEELMDYLCHRGQYADTSLAPRPGLILLDLNMPKKNGLEVLKEIKTDPELRLIPVIVLTTSRAEENIYHTYSLGANSYIVKPMTFSALVELMKTLGKYWFDTVELPLAVAGGRNEQKPNQSSAN

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Crispr_ID: NC_019676_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_10

3312106-3314038

TypeIII-A

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAAC	PILER-CR
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CRISPRCasFinder
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CRT
GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAAC	PILER-CR

26 spacers

cas1,cas2

The CRISPR arrays of NC_019676_10

>merge|NC_019676|10|3312106-3314038|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTCAATTCATTACCCCTCACGGGGATGGAAACGAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTCGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTCTCATTTGCATCTGGTGGGAATGAATGCACCGAAAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATGGTTTTCAATTCATTACCCCTCACGGGGATGGAAACAATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGGGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTCTATAGTTTCATCAAACTCACAACACAGTATTTTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTTTTGGATGTTCTCAAGCGTGCACTTTGGATCATTATTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACAAATATTTTCCCGCATGACCTACTAGAAAATTATCTACATCGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACATGTACGTATGGTGGACTATAATTATATCCGGGGATGTCGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCTTAAAAATTTGCAATTCTTTACACTGATTAATTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACAAACCTAATAGACCACCAGTAACCGCGCTGAAACCAGGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTTAATTTCAGTCTGACTAATGCTTGGAGCAGGGGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAATGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACCTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGAGTTTTCAATTCATTACCCCTCACGGGGATGGAAACTCAGCAGTATCTCGTTTGACACTGTCCAACGGAAGGTGTTTTCAATTCATTACCCCTCACGGGGATGAGAAA

>NC_019676|10|5|3312106-3312948|PILER-CR
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	GAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCATTTGCATCTGGTGGGAATGAATGCACCGAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTATAGTTTCATCAAACTCACAACACAGTATTTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTTTTGGATGTTCTCAAGCGTGCACTTTGGATCATTATTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACAAATATTTTCCCGCATGACCTACTAGAAAATTATCTACATCGTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ATGTACGTATGGTGGACTATAATTATATCCGGGGATGTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTTAAAAATTTGCAATTCTTTACACTGATTAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAACCTAATAGACCACCAGTAACCGCGCTGAAACCAG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTAATTTCAGTCTGACTAATGCTTGGAGCAGGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAAT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGA


>NC_019676|10|9|3312106-3314038|CRISPRCasFinder
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	GAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCATTTGCATCTGGTGGGAATGAATGCACCGAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTATAGTTTCATCAAACTCACAACACAGTATTTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTGGATGTTCTCAAGCGTGCACTTTGGATCATTATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAATATTTTCCCGCATGACCTACTAGAAAATTATCTACATC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ATGTACGTATGGTGGACTATAATTATATCCGGGGATGTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTTAAAAATTTGCAATTCTTTACACTGATTAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAACCTAATAGACCACCAGTAACCGCGCTGAAACCAG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTAATTTCAGTCTGACTAATGCTTGGAGCAGGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAAT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCAGCAGTATCTCGTTTGACACTGTCCAACGGAAGGT
GTTTTCAATTCATTACCCCTCACGGGGATGAGAAA

>NC_019676|10|7|3312106-3314038|CRT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	GAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCATTTGCATCTGGTGGGAATGAATGCACCGAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTATAGTTTCATCAAACTCACAACACAGTATTTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTGGATGTTCTCAAGCGTGCACTTTGGATCATTATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAATATTTTCCCGCATGACCTACTAGAAAATTATCTACATC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ATGTACGTATGGTGGACTATAATTATATCCGGGGATGTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTTAAAAATTTGCAATTCTTTACACTGATTAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAACCTAATAGACCACCAGTAACCGCGCTGAAACCAG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTAATTTCAGTCTGACTAATGCTTGGAGCAGGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAAT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCAGCAGTATCTCGTTTGACACTGTCCAACGGAAGGT
GTTTTCAATTCATTACCCCTCACGGGGATGAGAAA

>NC_019676|10|6|3313064-3313966|PILER-CR
	GAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCATTTGCATCTGGTGGGAATGAATGCACCGAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTATAGTTTCATCAAACTCACAACACAGTATTTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAACTTTTTGGATGTTCTCAAGCGTGCACTTTGGATCATTATTGTTTTCAATTCATTACCCCTCACGGGGATGGAAACAAATATTTTCCCGCATGACCTACTAGAAAATTATCTACATCGTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	ATGTACGTATGGTGGACTATAATTATATCCGGGGATGTC
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTTAAAAATTTGCAATTCTTTACACTGATTAATT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	AAACCTAATAGACCACCAGTAACCGCGCTGAAACCAG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTAATTTCAGTCTGACTAATGCTTGGAGCAGGG
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAAT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	TCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGT
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC	CTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGA
GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113662.1\|3322297_3324190_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_019676.1\|WP_015113665.1\|3325860_3326304_-\|RrF2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
NC_019676.1\|WP_015113664.1\|3324833_3325793_-\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NC_019676.1\|WP_015113660.1\|3319131_3321615_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_019676.1\|WP_157374025.1\|3310759_3310897_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019676.1\|WP_015113661.1\|3321834_3322332_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_019676.1\|WP_015113648.1\|3302950_3303256_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113649.1\|3303348_3303618_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044499980.1\|3318678_3318984_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225112
NC_019676.1\|WP_157374028.1\|3317904_3318045_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113656.1\|3311025_3311769_+\|DUF4384-domain-containing-protein	unknown	unknown	gnl\|CDD\|379557
NC_019676.1\|WP_015113647.1\|3302598_3302829_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113659.1\|3318013_3318499_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NC_019676.1\|WP_015113657.1\|3314099_3317876_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019676.1\|WP_157374226.1\|3310462_3310738_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113663.1\|3324215_3324752_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113665.1\|3325860_3326304_-\|RrF2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	1.62071e-48
NC_019676.1\|WP_015113657.1\|3314099_3317876_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	3.65627e-50
NC_019676.1\|WP_015113656.1\|3311025_3311769_+\|DUF4384-domain-containing-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	7.7867e-20
NC_019676.1\|WP_015113663.1\|3324215_3324752_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.62789e-93
NC_019676.1\|WP_015113654.1\|3308169_3310188_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.02393e-117
NC_019676.1\|WP_015113652.1\|3305425_3305662_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00302278
NC_019676.1\|WP_015113650.1\|3303746_3304025_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.6991e-29
NC_019676.1\|WP_015113661.1\|3321834_3322332_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.43783e-69
NC_019676.1\|WP_015113664.1\|3324833_3325793_-\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	9.30606e-127
NC_019676.1\|WP_015113662.1\|3322297_3324190_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.32097e-82
NC_019676.1\|WP_044499980.1\|3318678_3318984_+\|PAS-domain-containing-protein	gnl\|CDD\|225112	COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms].	0.00595349
NC_019676.1\|WP_015113659.1\|3318013_3318499_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	1.28899e-58
NC_019676.1\|WP_015113660.1\|3319131_3321615_+\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.94503e-63
NC_019676.1\|WP_015113651.1\|3304024_3305065_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.78489e-72

>NC_019676.1|WP_015113656.1|3311025_3311769_+|DUF4384-domain-containing-protein
MSRTLVASPEGVQLARKALKAKNLTQTDFAIEVRLGYSTVSNFFNTKPIYRTNFQEICVFLGLDWKDIAVFGDIETEELSPLDKLWQQLQSLGSPTEQMGLVLVKEETLGWGTRIPSRYETSVQIGSYIQVEINLSTPGYLLLLQKDTSGQMWCFCPSCFAQQPHLDTGKTSLPQPGSPMNAFPVEGTPGKEEIIAIITKEVPQLDWLTQDNDEVLELEASHLTELLNYVHEHEESQLWYTDYMVSA
>NC_019676.1|WP_157374025.1|3310759_3310897_+|hypothetical-protein
MRGIKAIALFLPESDDRFYLLWGLDKGGCFVLWGRKRSPLSCLLY
>NC_019676.1|WP_157374226.1|3310462_3310738_-|hypothetical-protein
MAQLLKFAQFPLVQFLRQNFHFPTPKQIPQQPFPHREPIKHLLIGSPKAVTSTIHYLQVIGYASVGDWSPLQATGNPDEVMSILSRQILMQ
>NC_019676.1|WP_015113654.1|3308169_3310188_-|CRISPR-associated-endonuclease-Cas1
MFTQEHLHFAWLQVCAGSKTAGVDGISVELFESMATEQLQNLVYQLNNETYTASPAKGFYIPKKNGDKRLVGIPTVRDRIIQRLLLDELYFPLEGTFLDCSYAYRPGHNILQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTFLEKLSLEPSVLQLIEQQLQSGMIIAGQYRNFGKGVLQGGILSGALANLYLTNFDKKCLSQGINLVRYGDDFVIACNSWQEANRILDKITVWLGEVYLTLQSEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPKPVLKGEWVINDSGNPYFRTKPRPKKPVSHPPKACSIDKPINFPRASLSHYWQETMTTLYITDQGAYLSVKNQQFQVYYQGQLRIKVPVSRVSNVVLFGCCNVSHGAVSMALRRRISIMYLSQKGRYFGRLQVSGDAKVEYLMLQVERCQNPEFTRTLAEVIVTAKIHNSRILLMRLKRRKSSEFDDNLVKEAIKDLDILMDKLPFAESMDALRGYEGRAATVYFQALGSLFSGAFKFEKRTKRPPTDPVNSLLSLGYTLLSHNIFSFIQAVGLHSHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSNIFTEDDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSELTHPNTGYKVSFRRCLELQVREYVACLTGEVKIYRPMIWKP
>NC_019676.1|WP_015113652.1|3305425_3305662_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKQITLAELPETVQNLINQAQKTGEPLTIIQNGVPFAIISPIQKKSLLQTLSTLEPLDEDFADVDEGLLPLDDIEFSK
>NC_019676.1|WP_015113651.1|3304024_3305065_-|CRISPR-associated-endonuclease-Cas1
MSTIYITEQDVTFQIQHQYLKVFYQQTQRICIPIRNLSQFIIFGNINLPKEVIQIVRSHNIPVLYLTQTGEYLGRLENPSQRQAKYLTYQHRRAQDKEFNRATAESIIWAKLHNQHTFLQNWTRHYTNYIIQRALNYLTLLMDNLSVAPGIEELHEYSEEADNIYYCALTALLSFYNGSPYINSKRISGLIDLGNQLLHQYIYTLLNTVGLDPNYAILHRNNHNELPLAWDFTAEFRTLMVDDLVLNFIRNLANTNGNGNGKSHSHKLLQKFLQHWEGKLRTFVLHPYAGEISYRQCLDLQVREYLASLLGDVEFYRPLALKFHPANSDFTNTIKPQTVPLKLVKR
>NC_019676.1|WP_015113650.1|3303746_3304025_-|CRISPR-associated-endonuclease-Cas2
MFYLVCYDIVSDTRRNKVAKLLESYGLRVQKSVFECVLDEKQYESLSKYLFRLVNKREDQVRFYPMSAHNRCKVAVLGTQPEFVVDDAAFIV
>NC_019676.1|WP_015113649.1|3303348_3303618_-|hypothetical-protein
MHIQAVKFRLIFAAKAQKQLDLLSPKDRKQYDKAFECFANNGAAYRSLRTHRYRCKDGEFWSSSASMAKRFYWRYTEEQSIIIMYLDSH
>NC_019676.1|WP_015113648.1|3302950_3303256_-|hypothetical-protein
MSNLRRITTREQRLIFLYSNWNFGMTPTEFYAKWAVSYELIALICSRSDSTVRGWFRNGSNRRYPTHNDLLHLALMDFLLEHFEEIPEQVLHWLGFNHHDS
>NC_019676.1|WP_015113647.1|3302598_3302829_-|hypothetical-protein
MTYFQQLHPWCIIRILSNKQLSDNAGDISNVVARFRRRDDAVAYLQMLQHSSKNIKFLIIFDVQGVRNLPKNEALS
>NC_019676.1|WP_015113657.1|3314099_3317876_+|tetratricopeptide-repeat-protein
MKKLIKQLNQLNLQVVELAGQGNLEQALIVAQQAVNLGKNQQLTENPEYCDSLNNLAELYRMQGRYLLAQPLYLQTLTLRKNILGSEHPDVAQSLNNLAALYHAQGNYIEAEKLFLEALELWKDIFGEEHFQIATNLNNLAEIYREQGKYFQAEQVHLEVLAMRKRLFGESHPDIVQTLNNLANIYTSQGHYADAEQMHLKTLAMKQSLFGESHPEIAVSLNNLAALYDSQGRYLEAEATFHEILTKLPKILPNEHPYIATILNNLASNYKEQGRYRESEQKYLEALAMRKRLLGNQHPDVAASLSNLADVYVSQGRYLEAEQIYLEAHGMRKQLFTSEHPDIAESLRNIAVVYTYQGRYLEAEQQYLEVLPMLEKLLGKEHPVIADNLINLAALYEEQGRYAEAEQKYLIALEIQRNILGLEHPEIAHTFNQIAVLYRLQGRYAESEKLHLECLAMAKRLLGEQHPFVAVVLNNLAVLYDDLNQYSQAESLFLEALAIVKTAFGNEHPQVATTMNNLAVIYDFQGRYQEAEQLHLETLNLRKSLLGEEHPKVSISLNNLGELYFSLGRFAQAEQKYVETLAMRKRLLGEEHPDVAFSMNNLATVLAATNRPDEALAYRIAASKIEDKIIRNIFAFSSESDRLSFLDKIRNNFDLFLSLVYQHLSNSDNAKLAALDFILKRKGLTASALAAQNQALYSGRYPQLQEKFRQLSDLNTRLVHLTFSVPQTDDTSTTEKTLHQLRTYRENLTRLQAQYNYLQKQLALQVPEIQLSEETFDRQTIAAALPPDSILVEFVRFDVFDFQAIAANGATQWYPARYLAFILKAGQPDAVQMLDLGIAATIDEVIQVFRLQASDYHQPTLALRKTPNKPKLHIQSYDSTAAIQLSQLLFAPIRDCVKDCRHLIVAPDGNLNLVPFQILPVDNTGTRLLMNEYTISYLSVGREILHSKVQKPKPSISAPLIIADPDFDLTAESATNLASKAETKIKPPIPETTLRRAVGTRFLGESVAKKLLDAKLYLGTEALESRLVNSDCPNIMLIATHGLFLSNSETKPSDRQRTFLSIERLRTTKAENPMMRSGLALAGANTWLCGGTLPPNAGKGFVFAQDIASLDLWNNELTVLSACDTARGDIKIGEGVFGLRRAFAVAGSQTLVMSLWPVPDRVTAFLMERFFDNLQSGIGRAEALHQAQNYVRTITVKELRQSALGVEVLKELLRAKEVSADSQIDCQEEDTPLQHPFYWGAWICQGNTEPLTVRAVFS
>NC_019676.1|WP_157374028.1|3317904_3318045_-|hypothetical-protein
MLANSQEKIVKIAEVFAYARVLSREQAHNLVAIADNTKVLLYPKLT
>NC_019676.1|WP_015113659.1|3318013_3318499_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MTNTFTAPVKPRIEDSFAITFAPLSLEEIYAKADASANGAVVVMSGMVRNNTDGQPVVALEYQAYEPMAMQVFYQIAAEIRTFWTEINRVVIHHRIGRLQVGEISVLIAIGCPHRGEAFEACRYAIDTLKHNAPIWKKEHWQNGSSTWVSIGACEQSGENC
>NC_019676.1|WP_044499980.1|3318678_3318984_+|PAS-domain-containing-protein
MSATISVIAASSSGRSPFAHIVEDISDRQQAETQLRRKETLLHSMNSVSPQAFYVVDKYTDNILYFNDRFCEIWGIVHLKELMEYQQLFHQDIQLPNNSCE
>NC_019676.1|WP_015113660.1|3319131_3321615_+|PAS-domain-containing-protein
MTNQDSALILIVDDDDVTRIHLRQLMEHAGYRVVEARNGCEAIGVYTDLHPDMVLLDAIMPVMNGFTCCAQLQTFPDIQDTPILMITAAYEPADVERAFAVGAIDYITKPIQWLVLSHRICHLLAASRAIKQLRQQNQQAQLREAQIKIALEAARMGTWDWDIITNKITWSDNKEALFGLKPGSFDGKYETFLNCIHPQDRHFVNISITQAVQTDTECDVEFRIVLPDLSIRWLVSKGVVFRNAAGEAARMFGIVVDITKRKQAEAELRQSEERFQIITRATNDVIWDWDLLTNQVWWNQGVQTLFGYSLSQLNADLSWWYERIHPEDQPRIESDMWDAMNRAQQFWSNEYRFRCYDNSYADILDRAYIIYDQTGKPVRMIGAMMDITERKRVQAQLQWQNLRSQLFADITLKIRQSLQIDEILQTSVTEVQKLLHADRVLILQLRSNGKAITLKEAVVSGLATASDLEIINRATFDPMCLAKYAQGTIKVISNIDQEQANISIAYLQILQQLRVKAQISVPIFLQNQIWGLLVAHECAHPRQWNNWEIELFQQLADQIGIALAQSQILETETRQRQELSRSNEELQQFAFIASHDLQEPLRKIKTFSERLISNCGDALPAPASDYLERMQNAVVRMQTLIEDLLTLSRVTTRAQPSISVNLAQITQEVLSDLEVLIQQTGATIEVGDLPTIPADPLQMRQLMQNLIGNALKFHRPQMTPIVKIYSQYFHNQSDQFVVGLELCQIIIEDNGIGFEQKYSDRIFQIFQRLHGRQEYEGTGIGLTICRKIVERHFGKITAESKPGQGTKFFVTLPMNFPTEFLFLERDY
>NC_019676.1|WP_015113661.1|3321834_3322332_+|response-regulator
MKGRQPTVTILMADDDEDDSMLIREAITVSQLPIDLHAVSNGEELMDYLCHRGQYADTSLAPRPGLILLDLNMPKKNGLEVLKEIKTDPELRLIPVIVLTTSRAEENIYHTYSLGANSYIVKPMTFSALVELMKTLGKYWFDTVELPLAVAGGRNEQKPNQSSAN
>NC_019676.1|WP_015113662.1|3322297_3324190_+|response-regulator
MNKNLIRVLLIDDDEDDYILTRDWFGEFQADGCELSWVDNYADAKQAIAANQHDIYLVDYRLGIHNGLELLREAVVNGCAAPIILLTGQGDREIDIEAMKAGAADYLEKSQLTAPLLERSLRYAIERKQTEQKIREQAALLDIATDAIFVRDLDDQILFWNKAAETLYGWRKDQVIGKKTPALWQEKNLSRLQEALRLLMKNGSWQGELHQTTTSNKKIIVESRWTLVRDFAHQPQAILVVNTDITQKQQLEAQFLRAQRLESIGTLASGIAHDLNNVLAPILMTAQLLESQLQDERSRRLIPILTANAKRGANLVKQVLSFTRGIEGERTLLQFKHLILEIQQIAKETFPKTIEITTRLPQNLWVISGDATQLHQVLMNLCVNARDAMPNGGILKIIAENLLVDKNYANMHIDAKVGPYIVISVIDTGLGISAEILDRIFEPFFTTKELGKGTGLGLSTVLGIVKNHGGFINVYSEEGQGSQFKIYLPAQQITETLEELEPVFPSGNGELILIVDDEPAIRDITKTSLESYNYKAITASDGIEAIALYAEHRDEISLVLTDMVMPSMDGLTTIRTLQKINPDIKIIAISGLASSDKVNAAYDIGIKAFLSKPYTANQLLEAISLIKNHN
>NC_019676.1|WP_015113663.1|3324215_3324752_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MCAKVVEILSSEDLRRTLTRLASQIVERTRDLSQLVLMGIYTRGVPLAESLARQIEILEGVTVPVGALDITFYRDDLDKIGLRTPVKTDIPFDLTGKTVVLVDDVIFKGRTIRAALNAVTEYGRPEIIRLAVLVDRGHREVPIQADFVGKQLPTAKEEVVKVYLQDLDGRDAVELIGD
>NC_019676.1|WP_015113664.1|3324833_3325793_-|cobalamin-biosynthesis-protein
MTLIIAAILDFLIGDPWGWPHPVQVMGWIISRFTKLALSICQNSLTQRIAGILLGIILIIGSGCIGWLTVQIARELHPILAIVIESIILASCFALRSLRTAATDVLQPLITGNLSVARQALSNYVGRDTQNLSEAEILRAVLETVSENATDGVMAPLFYAIIGACIPNLGAVPLALAYKASSTLDSMVGYKEAPYTYLGWFCARLEDYLTWLPCRLTVITLALLSGKPLSVWRICCRDAILDPSPNSGWSECAYAAILGVQMGGINWYRGVAKEKPLLGDAIYPITPTTIHQALQLTRYSFLLWLGIAIAILFCLPNKS
>NC_019676.1|WP_015113665.1|3325860_3326304_-|RrF2-family-transcriptional-regulator
MKLTTKGHYSVKALLDLSLQPDYGPVSVRAIAQRQDIPAPYLEKLLIEMRRSGLVKSMRGSIGGYQLAREPREISIGQILEAVGETITHIPDRHPTPIQAEDWVTYTLWQRLNQKLKEALYSITLADLYYDARSWQASLGEEASFVV

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Crispr_ID: NC_019676_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_11

3371366-3371462

Orphan

Consensus_repeat	Method
ACTCAGCACGGGCTAAACGCCCCGCTACCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_11

>merge|NC_019676|11|3371366-3371462|CRISPRCasFinder
ACTCAGCACGGGCTAAACGCCCCGCTACCGCTCTAAGCGCAGCCATGCCCGCAGGGCTTTACAGCACTCAGCACGGGCTGAACGCCCCGCTACCGCT

>NC_019676|11|10|3371366-3371462|CRISPRCasFinder
ACTCAGCACGGGCTAAACGCCCCGCTACCGCT	CTAAGCGCAGCCATGCCCGCAGGGCTTTACAGC
ACTCAGCACGGGCTGAACGCCCCGCTACCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113705.1\|3374741_3375140_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|377579
NC_019676.1\|WP_015113699.1\|3367735_3368434_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019676.1\|WP_015113712.1\|3383622_3383895_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113692.1\|3360934_3361852_+\|DUF4437-domain-containing-protein	unknown	unknown	gnl\|CDD\|379626
NC_019676.1\|WP_015113704.1\|3374443_3374755_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_019676.1\|WP_015113693.1\|3361887_3363357_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238627
NC_019676.1\|WP_015113695.1\|3364322_3365159_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187617
NC_019676.1\|WP_015113703.1\|3372172_3374440_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_019676.1\|WP_044500805.1\|3375227_3376232_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_019676.1\|WP_015113696.1\|3365560_3365959_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_019676.1\|WP_015113697.1\|3365972_3366449_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113711.1\|3383266_3383623_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_019676.1\|WP_015113702.1\|3371741_3372167_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_019676.1\|WP_157374031.1\|3376517_3377081_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|224351
NC_019676.1\|WP_015113708.1\|3377186_3379595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368963
NC_019676.1\|WP_015113710.1\|3381381_3382734_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_019676.1\|WP_015113698.1\|3366662_3367685_+\|phospholipid/glycerol-acyltransferase	unknown	unknown	gnl\|CDD\|153249
NC_019676.1\|WP_015113694.1\|3363493_3364288_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226085
NC_019676.1\|WP_015113700.1\|3368510_3369155_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971
NC_019676.1\|WP_015113691.1\|3360058_3360874_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|235135

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113705.1\|3374741_3375140_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	5.97658e-14
NC_019676.1\|WP_015113695.1\|3364322_3365159_-\|SDR-family-oxidoreductase	gnl\|CDD\|187617	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs. This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.51086e-43
NC_019676.1\|WP_015113692.1\|3360934_3361852_+\|DUF4437-domain-containing-protein	gnl\|CDD\|379626	pfam14499, DUF4437, Domain of unknown function (DUF4437). This family of proteins is found in bacteria. Proteins in this family are typically between 152 and 283 amino acids in length.	3.84265e-76
NC_019676.1\|WP_015113704.1\|3374443_3374755_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.03292e-06
NC_019676.1\|WP_015113693.1\|3361887_3363357_-\|amidohydrolase-family-protein	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	2.58855e-126
NC_019676.1\|WP_015113699.1\|3367735_3368434_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.05778e-87
NC_019676.1\|WP_015113703.1\|3372172_3374440_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.25997e-83
NC_019676.1\|WP_044500805.1\|3375227_3376232_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	3.09806e-177
NC_019676.1\|WP_015113696.1\|3365560_3365959_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	5.41568e-10
NC_019676.1\|WP_015113711.1\|3383266_3383623_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.81597e-26
NC_019676.1\|WP_015113702.1\|3371741_3372167_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.91641e-73
NC_019676.1\|WP_157374031.1\|3376517_3377081_+\|YdcF-family-protein	gnl\|CDD\|224351	COG1434, COG1434, Uncharacterized conserved protein [Function unknown].	6.2149e-22
NC_019676.1\|WP_015113708.1\|3377186_3379595_-\|hypothetical-protein	gnl\|CDD\|368963	pfam06537, DHOR, Di-haem oxidoreductase, putative peroxidase. DHOR is a family of di-haem oxidoredictases. It carries the two characteristic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.	7.11015e-09
NC_019676.1\|WP_015113710.1\|3381381_3382734_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	1.81205e-155
NC_019676.1\|WP_015113698.1\|3366662_3367685_+\|phospholipid/glycerol-acyltransferase	gnl\|CDD\|153249	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.	1.51877e-21
NC_019676.1\|WP_015113694.1\|3363493_3364288_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	gnl\|CDD\|226085	COG3555, COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases [Posttranslational modification, protein turnover, chaperones].	1.75645e-70
NC_019676.1\|WP_015113700.1\|3368510_3369155_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	1.18439e-114
NC_019676.1\|WP_015113691.1\|3360058_3360874_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|235135	PRK03592, PRK03592, haloalkane dehalogenase; Provisional.	3.22082e-17

>NC_019676.1|WP_015113700.1|3368510_3369155_+|ATP-phosphoribosyltransferase
MLTVALPKGELLKNSIRLLQSVGLDFSAFLDSGNRQLQILDASGQAKGLLVRAQDVPVYVEYGQAQLGIVGYDVLREKQPQVAHLVDLQFGYCRMSVAIKASSPYKSPLDFPPHCRIASKYVNCAREYFQSLDLPVEIVPLSGSVELGPITGMSEAIVDLVSTGRTLRENGLIELETLYHSTARLIGHPLSYRINTGNLCELSAKLREVALVGV
>NC_019676.1|WP_015113699.1|3367735_3368434_-|response-regulator-transcription-factor
MRILLVDDEAELTDPLSRVLTREGYTVDAAYNGTNGGQLATASNYDLLILDWMLPGKTGLEICQEVRRQGKNTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSGLQTYETTSGRLVVADLELDCDNQVAYRQGRIIELSQKESQLLQYFMEHTGQLLTHAQIMEHLWQNEEQPSSNVIAALIRLLRRKIEVGKETTLIHTVYGKGYRFGTAFVETI
>NC_019676.1|WP_015113698.1|3366662_3367685_+|phospholipid/glycerol-acyltransferase
MIHQHSDSIINQSLATASNKGYQFSWFDWFCLWYPPGWLVLFNRHWQHYHNDPDGWNWWEYILFLLPCGFYLALLMRWLRLGCRSPRKEVGEFNPNYQQAFRQEILAPIVKYYFRGELQQINNLPSTGPMIVAMNHAGMCFPWDFLTLGYLLSETRQWVVQPLASVSLFEHPWIIWWLPSQWSQVLGGVRAEIGDFETAIAQGKILLYAAEGIRGPGKGWHKRYQLQKFDISFIQLSDRYHIPILPVLCIGSEFLHPWAINSKKLQRIIKLPFLPISPLMLILLLFPSMGIWAMKTRLQYFIQPLEQQINSSKDRAITYQQAQNFREKLQTQLHQILVQR
>NC_019676.1|WP_015113697.1|3365972_3366449_-|hypothetical-protein
MNKALDETLSLEIAKRIKSKKDKIFDNAYKAVLSTQGAIYVQGFLVYAGKPYRPVEHGWIELKDTSGEDSITRIIDPNLPHIRKNNQELWYFSAQTLTAKQLKAIIEESKEDYPEDDPLPIYGTTPYEYYGDVMLGGKEYLVAYQAAEAKCKELKELN
>NC_019676.1|WP_015113696.1|3365560_3365959_+|nuclear-transport-factor-2-family-protein
MTQDSANTLKVAQQAFEHFTSGLATGDWQAFLDMLTEDFTFWFPMGKFHGLNEGKKRAQEFLQYVSESFGSGITLTSLDRVTSNETTVVFEFRDEGLLLGQPYKNRVAVSFDVCDDKICGYREYFGSDGKSY
>NC_019676.1|WP_015113695.1|3364322_3365159_-|SDR-family-oxidoreductase
MISKLAIVTGGTRGIGWGISQQLAKDGYNLILGFNSNEEAALIAKSNLESTYGKKVYLIKGDVAEASTIEKIFKCVEDNFQGKLTAFIHNAGLYVGLTTSHESHQAIAAANDHTQLLGTGKWTNFEKYDYYQSVYPKCFIRCVEKAINYMEDGNGYIVAISSPGCNTNQTPKLNYVMPGQAKAVVEFLARYYAKTLGPRRITVNVVIPGYFKTEAWNFATVNSGGIDSEAVKQRIESTPMQRWAFPEEIGGVVAFLCSPKAAFITGVALPVDGGFHLA
>NC_019676.1|WP_015113694.1|3363493_3364288_+|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein
METFNEYHLDPKQFPFLKGLQDEWEVIRDEFTSFIQQVSPEELKFAYDVLGPKSKTIKTKGDSKYSAFGILFQGLFIEEYIQLHQIQYSDYGTDEASAKALALRKKYFTNLAGAIDKVNFGNEDILRNVYFGTFHPGLDIKLHVNYNPHTNRGYLGLIVPEGDIAMKICHEQLYWHEGKFLILDHSYPHCPHNYTSYDRTVLVVDFFKPEKPREEVIGFEQEQVTERMQDNPYSLGVFGKSDKANQEDFIKYGLAHQLEWDKAL
>NC_019676.1|WP_015113693.1|3361887_3363357_-|amidohydrolase-family-protein
MSEPPLLDKIIKNVRVVRPHADVVELLDIGIKNGKFAEIAPHISVNQALEVFDAKNLLGFPGVVDAHTHIGIYQPLDKDAVTESKAAAMGGVTTTLNYIRTGQYYLNKGGSYRDFFPEVLALSAGNFFVDYSYHVAPIASQHIDEIPLLFEEHGVSSFKIFMFYGGYGLHGLSDQQNLFLMINKEERYDFAHFEFIMRGITRLMKQYPAARDSISLSLHCEVAEILNAYTKIVENDSSLSGLKAYSAARPPHSEGLAICIASYLANETNCANINLLHLSSRKAMEAALTMQTAFPHINFRREVTVGHLLLDVDTPNGTWAKVNPPIRPRADVEYLWQAVLNHQIDWIVSDHACCSAEQKRSTKDPNNIWLAKSGFGGTEYLLSGVLSEGSKRGMSYNQMAKLLSWNPSRRFGLLAKGDIAVGFDADLVLVDPNESFVVRAAESESQQGYTPFEGMELTGRVKSTFLRGNLIYNNGQVLGEPSGCYLKRR
>NC_019676.1|WP_015113692.1|3360934_3361852_+|DUF4437-domain-containing-protein
MDEDKKSINLVKNDKINDFLNVECVKEDWGGDGRGRLNLSGRRTAISKEYLPRKYQFFNTNALPEEQGWRISGMPDNLLPGKRRLLTWHDCGASTSRVVLPPQFEAPPGIFTADLEIFILAGDIQIGEWRLDKHSYCFIPAGVQVESWKVLGEEEVEILWMENGPVPLKYQYAETSHPDARISEFIPALDSKLLPWSQTQTVQFEVAKKKFLRKHNNGGGTWLLAILPHYDSHYGMIQSYNEEAFALAGYCNIGNYQFAKDHLGYCPSYNNIPRHITVDGYFGFVRVDRDVSQLGTIFSSAHIHE
>NC_019676.1|WP_015113691.1|3360058_3360874_+|alpha/beta-fold-hydrolase
MNQPIKRAFLDTEDGQILYCIAGEGEPLLLLHQNFRSSDEFRELIPIFAQKRLVIAMDLLGLGDSDKPPRMYSIEDYARTVVLLLDELGIKTASILGNHTGAFIAAEVAAAYSERVKTIILCNIDNFSEDGKAALSEKFANLKIKSDGSHLIERWLARVNYIGSAELNHRWVLDDLKCFAYPWYAPLAVIDYSQRMEARFRLIKSPTLILSGTEDVKQLERLGFANADNREFILTAISHAKMIDIEGGTICMMNQMPEEISNVVIEFLDEN
>NC_019676.1|WP_015113702.1|3371741_3372167_+|response-regulator
MPIEVLLVEDNPGDAELTRIALQDSKISINLNIVEDGVEAMAFLRKQDSYTRKPHPDIVLLDLNLPRKDGREVLAEMKSDDHLKRIPVVVLTTSQSEEDILKAYNLAANCYITKPVDFDQFVKIVQSIENFWFAIVKLPPE
>NC_019676.1|WP_015113703.1|3372172_3374440_+|response-regulator
MAGELIKVLLVEDNPGDVFLLQELLREINTVKVELCPVEQLSEALKLLVYDSFDLMLLDLSLPDSQGIDTFVNAARQAKATPIIVLTGLDDETLALRAMQEGAQDYLVKGKVTGDLLVRSMRYAIERQRIEDALRQSEERFRVALKNSPIFVFNQDKELRYTWVYNSISGWTTQDMLGKHDSELLPDEDAQNLTTIKKDVLTTGIGTRAEVALTTPQGIRYYDLTVEPLRNESQDIVGITCASIDISENKQAEAKIREQAALLDITTDAICVRDLENKILFWNKGAENLYGWQASEAWGKNVSELLFDESCPEFEAAWLNVISKGKWQGELTKRTKTGKEVLVASRWSLVRDSHGKPQSILTVDTDITEKQHLEAQLFRAQRMESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINAKRGADLVKQVLSFARGVEGQRINLQPRHLIVEVAKILKETIPKSIEVCLDLSPHLWTVSGDSTQLHQVLMNLCVNARDAMPDGGTLTITAENLLIDENYARMNLDAKVGPYTVISVCDTGIGIPEEILDRIFEPFFTTKAVGQGTGLGLSTVLGIVKSHGGFVSVESQVANGTCFRVYLPAVGEQETFCQEEMTLQVGHGELILIVDDEPSIQEITRTSLETHDYKTLIAGDGIEAIAQYAKNADKINVVLMDIMLPSLDGVTAIRTLQKINPQVKVIATSGFMPKDKLAEIMKIGVKKFLSKPYTVNELLLSLQEILNEDV
>NC_019676.1|WP_015113704.1|3374443_3374755_-|helix-turn-helix-transcriptional-regulator
MDKTSDAIKIIDKITNSDFELQALVEEASLNAEVAQLIYEARTNAGLTQKQLAELVGTKQPVIARLEDADYEGHSLSMLQKIAHVLKQRVVIQLAPIEHEQSA
>NC_019676.1|WP_015113705.1|3374741_3375140_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MPETRVVFYQEEEGEVPVLDWLTRLLQEDRKGYANCVARIKQLGASGYELRRPAVDYLRDGIYELRAKHIHVQYRILYFFHGQNVAILAHAIIKEDTSVPPIDIERAIARKLVFEKNPEVHTYVKEQRDGQD
>NC_019676.1|WP_044500805.1|3375227_3376232_-|aspartate-carbamoyltransferase-catalytic-subunit
MPTTTWNRHHVISLADFTTAEYNTVLQTAASFQEVLSRRTKKVPTLQGQVVANLFFEPSTRTRSSFELAAKRLSADTLNFAASTSSMTKGETILDTAKTYLAMGTDIMVIRHKEAGVPNAIAQEMDRLGVRVSVLNAGDGQHEHPSQALLDLFTICTLIDRDRPNIEMLAGKKIAIVGDILHSRVARSNIWSLIASGAQVHLAAPPTLLPKLFAEYTYSEKTDTLNGQLFVHWQLEPALQDADFVMTLRLQKERMTAHLLPSLREYHQLFGINRQKLQLCKPNVKVLHPGPVNRGVEISSDLMDDPEFSLIQSQVTSGVAVRMALLYLIGSGKT
>NC_019676.1|WP_157374031.1|3376517_3377081_+|YdcF-family-protein
MKLPIYRLRRKLMWLLVGLILALLLTIPVRLAIAYYQTPQPQAILTLGGGANRQEFTALFAKFYPGIKIWVSSGLPPREARAIFQAEGITDDRFHLDYRAKDTVTNFTTLVEVFQQQRIQHIFLITSKFHLPRARAIATLVLGSRGIAFTPVSVPSEASELEPIDIIIRDIVRSLFWIITGYTGVEF
>NC_019676.1|WP_015113708.1|3377186_3379595_-|hypothetical-protein
MRKQQRFLLLIVGLSLGLSVLIGYINPQKVFGQIPLPDDATLIARRRQEVASNFVVQPPTRPLRPVERVRRDTFGDVGLTPVSTLAQLDTLLYPSIPNSIRERVLEGSTFFTTPNRVENGFGSTSMQTRCAGCHLNAIETVPNEGLLTGVSNVSRANRTTPTNFSFVSGDTQVNGGRAPGSRLDPVDSDGSVSLGRLSIASSGELDAVNNTGRTGAFTVFGDYSASANVFDPLNGNINRVTGFGQNYSGFLQHVRPPNEQLKALDPTIDCKPDAIPSVSEDRNLVGFNPATQQSSIGFRRAITELAGPPYIGRGLIEAIPNQDIINAADPNDIRGDKSSIKTALFQCTGDCVTGQINTIPSNIPVAQQQQRQNELLATGVGRFGLRANGSEMLQFILGGMFGSLSMTNLFSPVEQVIADPAIAPYNSKCRNLIPDGPAPDQFELDVSVPFSERNFIRSTAPPEFGRNLLAVLRAKDPSRLLPGNNPAARVQRGAQLFGVDLVAFSNRTIAGKMPRGGDGLDGNAINQNDRMVGCVNCHTPIQRTGLSPANGDPSLGPDAQALVDALSYRWAPLFSDINIHRGPVIDVERNSPIPRDPFLVSRADVFGQRPSGNNVATFMTYDLMRNFASDSFTNQQATALGDQFRTPPLTGIGRVGPPFMHDARVFLSTFNRDTTPAGTVTTNREVTNEPLVVRNVDEALLAAIELHDLPAPDDSKTSTLPGGGCPVPPGGKVVNKLGYDGSLTSSDKIVVDYGPSPQNVICPPYNSPLSNTRRSEAKEVMARFRSLTRDDQRAIIAFLREL
>NC_019676.1|WP_015113710.1|3381381_3382734_-|magnesium-transporter
MLIQDIRDSLFDVSDLNQLKCDLNRLQPVDVGEYITQLPEKQRAIAFRLLNKSQAIDVFEYLPTDLQEELINSLHDVQVVQIVEAMSPDERAELFDELPAGVVKRLLQQLSPEQRQATATILGYPEGTAGRVMTTEYVRLQEGLTVGEALSKIRRQDEDKETIYYAYVTDNNRKLVRVVSLRQLLFTFPDVYIRDIASDRVLKVKTETPQEEVAQIMKRYDLIAIPVVDREDRLVGIITIDDVIDILEEEATEDIQKLAGVSGDEEALSPPLVTMRKRLPWLLAIMGLYIGAASAIAPFQSVIAAVPVLAVIMPIFSNTGGTVGIQALTVTIRGLGVGEVTPRDTFKILRKEVLAGLGTAVVLALTMMALSMIWAKPQERWVGLIAGTVMATNTMVAVTLGTLLPMGLKRLKLDPALVSGPLVTTMLDTIGFLTFLTLISVALRVFHLPQ
>NC_019676.1|WP_015113711.1|3383266_3383623_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MRRGEVYDARLESNEGSEQGGTRPVIIVSRDAINSSSPVVLAVPCTTYQSGKRVYPTQVLILAPDGGLKRDSIAMADQVRVLSKTRFLRLRGAVSQLVMAHLSQALLIALDLPMPEEE
>NC_019676.1|WP_015113712.1|3383622_3383895_-|hypothetical-protein
MKAESVRTTLAIPRELLEATDQAVLEGKARSRNDFMVQAIRRELAAQKRAAIDAALAEMASDNDYQAEVLKLETEFAAAQWEAFLLEESL

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Crispr_ID: NC_019676_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_13

3449199-3449464

Orphan

I-D,II-B

Consensus_repeat	Method
AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA	CRT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
AAAATTG----------CAATTCAAACTAATCCCTATTAGGGATTGAAACA	PILER-CR

3 spacers

The CRISPR arrays of NC_019676_13

>merge|NC_019676|13|3449199-3449464|CRT,CRISPRCasFinder,PILER-CR
TAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTCCTGCTTCAGTTCTGGCTCAATATCAGCCGTAAGCTTTGCAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACACGCCTAGCCCTGCAAGGTTAATTGCGGCGATTAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAAGCTAATTTGTTCCCTGAGTTGTGCGCTGGAACATTGCAATTTAAACTAATCCCTATTAGGGATTGAAACA

>NC_019676|13|9|3449199-3449464|CRT
TAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACT	CCTGCTTCAGTTCTGGCTCAATATCAGCCGTAAGCTTTGC
AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA	CGCCTAGCCCTGCAAGGTTAATTGCGGCGATT
AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA	AGCTAATTTGTTCCCTGAGTTGTGCGCTGG
AACATTGCAATTTAAACTAATCCCTATTAGGGATTGAAACA

>NC_019676|13|12|3449201-3449463|CRISPRCasFinder
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCTGCTTCAGTTCTGGCTCAATATCAGCCGTAAGCTTTGCAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACGCCTAGCCCTGCAAGGTTAATTGCGGCGATTAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAGCTAATTTGTTCCCTGAGTTGTGCGCTGGAA
CATTGCAATTTAAACTAATCCCTATTAGGGATTGAAAC

>NC_019676|13|9|3449280-3449464|PILER-CR
AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA	CGCCTAGCCCTGCAAGGTTAATTGCGGCGATT
AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA	AGCTAATTTGTTCCCTGAGTTGTGCGCTGG
AACATTGCAATTTAAACTAATCCCTATTAGGGATTGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113761.1\|3456676_3457273_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_019676.1\|WP_015113757.1\|3443690_3444941_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_019676.1\|WP_015113750.1\|3437399_3437885_-\|allophycocyanin-alpha-B-subunit-apoprotein	unknown	unknown	gnl\|CDD\|381265
NC_019676.1\|WP_015113764.1\|3458537_3459116_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113762.1\|3457347_3458037_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_019676.1\|WP_157374034.1\|3460456_3460762_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044500813.1\|3458014_3458455_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_019676.1\|WP_015113752.1\|3439807_3440257_+\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|225083
NC_019676.1\|WP_015113755.1\|3441115_3442507_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NC_019676.1\|WP_015113751.1\|3438016_3439375_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|129571
NC_019676.1\|WP_015113769.1\|3462198_3463119_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_019676.1\|WP_015113765.1\|3459155_3460460_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_019676.1\|WP_015113754.1\|3440744_3441113_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_157374228.1\|3440318_3440534_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113758.1\|3445033_3445405_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_019676.1\|WP_015113768.1\|3461722_3462154_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_019676.1\|WP_015113756.1\|3442556_3443300_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113759.1\|3445430_3446396_-\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NC_019676.1\|WP_015113760.1\|3449583_3456228_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236848
NC_019676.1\|WP_015113767.1\|3460781_3461705_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239113

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113761.1\|3456676_3457273_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.58129e-132
NC_019676.1\|WP_015113757.1\|3443690_3444941_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.04713e-125
NC_019676.1\|WP_015113750.1\|3437399_3437885_-\|allophycocyanin-alpha-B-subunit-apoprotein	gnl\|CDD\|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	7.35473e-104
NC_019676.1\|WP_015113765.1\|3459155_3460460_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_019676.1\|WP_015113762.1\|3457347_3458037_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	6.78187e-77
NC_019676.1\|WP_044500813.1\|3458014_3458455_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.6765e-51
NC_019676.1\|WP_015113752.1\|3439807_3440257_+\|anti-sigma-regulatory-factor	gnl\|CDD\|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	2.24976e-32
NC_019676.1\|WP_015113751.1\|3438016_3439375_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|129571	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification].	5.34496e-177
NC_019676.1\|WP_015113769.1\|3462198_3463119_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.89958e-127
NC_019676.1\|WP_015113755.1\|3441115_3442507_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_019676.1\|WP_015113758.1\|3445033_3445405_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.99034e-09
NC_019676.1\|WP_015113768.1\|3461722_3462154_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.85063e-45
NC_019676.1\|WP_015113759.1\|3445430_3446396_-\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	3.65475e-122
NC_019676.1\|WP_015113760.1\|3449583_3456228_-\|HAMP-domain-containing-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.36632e-69
NC_019676.1\|WP_015113767.1\|3460781_3461705_-\|nucleoside-hydrolase	gnl\|CDD\|239113	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. .	1.79795e-112

>NC_019676.1|WP_015113759.1|3445430_3446396_-|acetamidase/formamidase-family-protein
MTHHILKATKETVHLGGFSHLLTPALTIDSGDTIDVETYTGYYIYDKAPPEFLTPEFVDICQNLPPERKIAGGPHLLTGPIYVRDAEPGDVLEVKLEAIAPRLPVGFNAIRPGWGALPEQFTQPALRFIPLDLANNIAEFPANSGIKIPLKPFFGILGVATPTSDRNSIPPGNYGGNIDNRELQAGSRIFLPIYVPGALFSLGDGHSAQGDGEVNVTAIETSMNGKISLKLRKDLSLTTPIAETPTDIITMGFAETLDAALEQALKNMIAFLEGFANLSAEDAYVLCSLAVNFRITQVVNSPQKGVHGMLPKSILSPKIIL
>NC_019676.1|WP_015113758.1|3445033_3445405_-|sulfite-exporter-TauE/SafE-family-protein
MSNILVQMLLIGLAAGVAGGMFGIGGGAIMVPAMVLLLGMDQKFATGTSIAAQILPIGILGAAVYHRSGNINIKYAVMIALGLVVGNLFGALFANQPFISSETMKKLYGIFLLLIGGRYLFFR
>NC_019676.1|WP_015113757.1|3443690_3444941_+|trypsin-like-peptidase-domain-containing-protein
MQNQIPDGNNPLNSNLDTKYRKQASWKKAAASLSLVLLGSGMTLTGGYLANHKSQVSESASNLALSRVNAAPPIVAGTDPNFVTQVVQKVGPAVVRINSSRTVKTQLPEEFNDPLLRRFFGSQLPEAQQRVERGTGSGFIISDDGQILTNAHVVDGADTVTVILKDGRSFQGKVLGKDELTDVAVVKIQASNLPTVSVGNSDQLQPGEWAIAIGNPLGLDNTVTTGIISATGRSSNQIGASDKRVDFIQTDAAINPGNSGGPLLNARGEVIAMNTAIIQGAQGIGFAIPIATAQRIANQLISTGKVEHPYLGIQMIGLTPQLKQNINSDPNSGLSIDEDKGVLVVKVMPNSPAAKAGLRAGDVIQKLEGNAVTDAESVQKAVDKSRIGGDLRLELRRNGQTVNLSVRPGAFPSQVQ
>NC_019676.1|WP_015113756.1|3442556_3443300_-|hypothetical-protein
MINRHQFSQSLAFLSLLAALGIDLVIPQVVAQTSIKTSFAKSVAFTCNDSETSIKAKNGPKISIGGKTIYIGYQQVSSQNQDPRIIRFDNGVKKWCRSDYETTIDDGRGYGLLWDGGNVLYGVFSSTGSQTGNDFRRFAKNGWLSSYGNGGGAKVAVIAKINPTNGSVSTATFVTAKKPNDGKTNSLAITNLSWNGTTLKVLADSWWSPRRADKNSLTCTGSSPYKYTAIFTGDLTKVNSASAVNCR
>NC_019676.1|WP_015113755.1|3441115_3442507_+|asparagine--tRNA-ligase
MVNRRIAEILRSGQPDESLVVQGWVRTKRDLKGFAFIEVNDGSSLANLQVVIHQDLPDFEAILKKLNTGASVEVNGVLVASQGKGQRIELKAEAVKVYGEADPETYPLQKKRHSFEFLRTIGHLRSRTNSFGAVFRVRNACSTAIHQFFQERDFLWVHTPIITASDCEGAGELFSVTSLDLKNIPRTDNQAVDYTQDFFTKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEGDMDLAEAFLKHIFNYVLEKCPEDMEFFNQRIDDTVLATAENIINNQFERLTYTDAIKLLEKADVKFDYPVSWGLDLQSEHERYLAEQLFKKPVIVTDYPAQIKAFYMRLSDDEKTVRAMDILAPKIGEIIGGSQREERLDVLERRVIAQDMKPEDLWWYLDLRRFGTVPHAGFGLGFERLVQFMTGMGNIRDVIPFPRTPQNAEF
>NC_019676.1|WP_015113754.1|3440744_3441113_+|hypothetical-protein
MKPPRKSHNSSSEENQSPDFEQELAQVERSLITIKERYTQIKLDQEQKAQWQQRQQELKENKPQTPEIKAELRQIQKQLELLELNLESQLFSWRSLKKPFWQVIRFGGMGVIIGWILKSYAG
>NC_019676.1|WP_157374228.1|3440318_3440534_-|hypothetical-protein
MERLTISPNDWHRLKSNRNSRASEQAAAALVFLLKNQPQEALARLEQAAGWLDKSISAPPCPTHGHKNSEV
>NC_019676.1|WP_015113752.1|3439807_3440257_+|anti-sigma-regulatory-factor
MISISLRPVGRYWGTLSFASTLYLCPILDLLLAEIPAKLQAELRLGLQEALVNAAKHGNNLDPSKRVVVRFSLIDNQYWWVISDQGQGFKPEPSSDEDPTDYLPSDESESGRGLCLLHQIFDQVQWSRKGTELRLCKQMENRPRLSLRR
>NC_019676.1|WP_015113751.1|3438016_3439375_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTNIWKQGELIEIAIADLTDTGDGVGRYEERVVFVPDTVPGDRVQVRLLHVKPKYAHGKLIQLLHPSPHRIRPSCIVADKCGGCQWQHINYEYQLEAKRNQVIQALQRIGGFTAPSVDPVLTALSPLGYRNKSTYPVSVSTTGQVQAGYYQKGSHQLVNLNQCPVQDSRLNPLLAEVKQDIQQRGWKIYNEQQHQGQIRHLGLRIGRRTGEMLLTLVVKDWKLAGITEQAQEWLKRYPQLVGVALNRNPERTNAIFGAETRTIAGVPYLKEKFADLEFQVRPDTFFQVSTETAEALLEVIQSELNLQGDEVLVDAYCGIGTLTLPLAQRVRQAVGLELQAEAVEQAILNADRNSIHNVTFQVGAVENLLPQMGIIPNVVILDPPRKGCDRSVIDSLLRSKPARIVYVSCKVATLARDLKLLCQGGTYTLTRVQPADFFPQTSHVEAAAFLVL
>NC_019676.1|WP_015113750.1|3437399_3437885_-|allophycocyanin-alpha-B-subunit-apoprotein
MTVISQVILKADDELRYPSSGELKSIKEFLQTGEQRTRIAATLAENEKKIVQEATKQLWQKRPDFIAPGGNAYGERQRALCIRDFGWYLRLITYGVLAGDKEPIEKIGLIGVREMYNSLGVPVPGMVEAINSLKKASLDLLSAEDAAAASPYFDYIIQAMS
>NC_019676.1|WP_015113760.1|3449583_3456228_-|HAMP-domain-containing-protein
MTTEQLTRETDNLDLKQLLKTLTAVKKGDFSVRMSVDQTGLAGKIADTLNDIIDQNERMALELQRIGNVVGKDGKITERASMGTVRGSWSDCVNSVNTLITDLVQPTAETTRVIRAVANGDLSQTIPTELDGKALKGEFLQTANIVNTMVDRLGSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVNVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVKGEILELKNTINIMVDQLSSFVSEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVKGEILELKNTINIMVDQLSSFVSEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGSEGKLGVQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIADVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLSSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTGAVNMMAGNLTDQVRSIAEVATAIANGDLSKKITVQVKGEILELKNTINIMVDQLNSFASEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAAVTTAVANGDLSKKISVDVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDSVNFMAGSLTAQVRNIADVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAYVRGVGGTWKDLTDNVNSMAGNLTAQVRNIAEVTKAVANGDLSKKITVDVKGEILDLKNTINTMVDQLSSFASEVTRVAREVGTEGKLGGQAVVQGVAGTWKDLTDNVNSMAGNLTAQVRGIARVVTAVANGDLKRKLMLDAKGEIETLAETINEMIDTLATFANQVTTVAREVGIEGKLGGQARVPGAAGTWKDLTDNVNELAATLTTQLRAIAEVATAVTKGDLTRSISVEALGEVAILKDNINQMIANLRETTQKNTEQDWLKTNLAKFTRMLQGQRDLETVSKLILSELAPLVGAQHGVFYLMDAGEQQQAYLKLLSSYAYRERKHLANRFHLGEGLVGQCALEKERILLTEVPMDYVKISSGLGESAPLNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAEELQTQQNELKETNKRLEQQAQSLKTSEDLLRTQQEELQQTNAELEEKAELLAQQKKEVEWKNREIEQARLSLEEKAAQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLTDNIDGNLSTKQVEYSRTIYSAGNDLLALINDILDLAKIESGTMSIDMSQMLVTDLREQTDRTFRQIAQDKGLNFTIELGAELPKAIYTDPKRLQQVLKNLLSNAFKFTDRGEVSLRIDVAKQGWSINQETLNRAPIVVAFSVVDTGIGIAPEKQKVIFEAFQQADGTTSRKYGGTGLGLSISREIARLFGGEITLVSSLTQGSTFTFYLPQFNSDSAFITPELTSQLVPTQHSPLSTPHSALPTQHGLNTPLPLTALLEDDRIDINNGDRVLLIVEDDIHFARILLEMAQQQGFKVIAAQSGSNGLVLAQQFQPVGILLDIRLPDMDGWTVLDRLKHDPNTRHIPVHIMTVEEGKRRSLQLGALAYLQKPASSESISEALNKIKGFVERRVKSLLVVEDDDTQRHSIVELIGNSDVATTAVATGAEALEAIISQQFDCLVLDLGLPDMNGFELLQQIKQQPNGEFLPIIIYTGIELNKAQEAELRRITETIIVKDVRSPERLLDETTLFLHRVQAALPEPKRQILEQLHSRDYILANKKVLIVDDDVRNIFALTSMLERYHMQVIYAENGRDGITMLETTQDIDVVLMDVMMPEMDGYETTRLIRQNERFRALPIIALTAKAMQGDREKCIESGASDYITKPVDIEQLLSLLRVWLYR
>NC_019676.1|WP_015113761.1|3456676_3457273_-|urease-accessory-protein-UreG
MTAFRVGVAGPVGSGKTALVDALCKALRDRYHLAVVTNDIYTQEDAQFLVRSQALNSDRILGVETGGCPHTAIREDASMNLAAIEQLEERFDNLDLVFLESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKTDLAPFVGADLNVMERDAKKMRGEKPFIFTNLKTQSGLTDVVSFVSKHIT
>NC_019676.1|WP_015113762.1|3457347_3458037_-|urease-accessory-protein-UreF
MDTITLTDIHFLGILQLASPALPVGAYSYSEGLETLVEDGIIANQETLKHWLTSELRYGAIRLEAAVMLRAAESAKMGNLETLSYWNHWLSAARETQELRNSSWQMGRSLAQLLGKLQPELLPTINSVGNPCNYAIAFGIAVAHWQIHLNAALLAYLHSWTSNLITAGVKLIPLGQTAGQALLLDLQPLISATLQEILVLEDDELSCCSWGLSLASMQHETQYTRLFRS
>NC_019676.1|WP_044500813.1|3458014_3458455_-|urease-accessory-protein-UreE
MILTQRKPPDADAVVSLTLALTAEERTRSRHRFEMADGQVVFLRLPRGTVLRDGDILQDENDGSLMRIVAKPEPVLTVSATSSLLLMRAAYHLGNRHVAVEITPSYLRLSPDGVLCGMLVQLGLEITEEIAPFQPELGAYGHHHPH
>NC_019676.1|WP_015113764.1|3458537_3459116_+|hypothetical-protein
MAKRKKSNLQWIKETLDLQPDHHWESPSGYKIFVANRGAVRFNVPQNWVFEPQEKSFKFMDKKPPKDDCCLEVSFNHLPPNDWTLFPLKATLKKVVEEDSRDVIEKGEVFTIKRQTARIVWTELKFIDVQAEPREAFSRICIGLGSNIQCLITFDFWADQAEQLTPVWDEAMRSLTLGLYIRDPRTGLAFPD
>NC_019676.1|WP_015113765.1|3459155_3460460_-|glutamate-5-semialdehyde-dehydrogenase
MTIVEVGSSLVEIAGKTRAAASKLAILSTEAKNQAIAAIAQGLESAQEEILQANVADCQAAAAEGIAKPLYKRLQLDEHKLRDAIAGVRDVGKLADPIGKVQIHRELDTGLILKRITCPLGVLGIIFEARPEAAIQIVSLAIKSGNGVILKCGKEAVRSCEAIVKAIKQGLSQTDVSPDAVQLLTTREETVGLLKLDKYVDLIIPRGSNSFVRFVQENTRIPVLGHADGICHAYIDQAADINKAVEITVDAKIQYAAACNAIETLLVHQAIAGEFLPQVATALAENHVQLKGDQRTLEILPNIAPASEIDWETEYSDLILSIKIVDDLEDAIAHINQYGSRHTDVIITEDIATAEAFFGLVNSAGVFHNCSTRFADGFRYGFGAEVGISTQQMPPRGPVGLEGLVTYKYQMTGNGHIVASYTGANAKAFIHRDL
>NC_019676.1|WP_157374034.1|3460456_3460762_-|hypothetical-protein
MTSDIVDLITRIVNATADIVDVITCIVNVTVDIVDVITCIVNVTADIVDATTGKNNSLYWRERFGEDFFCSLSIGIIQESNQIAIGWKINVSAIIKGYFLI
>NC_019676.1|WP_015113767.1|3460781_3461705_-|nucleoside-hydrolase
MSKQLVLMDHDGGVDDYLATMLLLTMDHIELLGVVVTPADCYVEPAVSATRKIIDLMGFSHIPVAESTVRGINPFPRLYRRDSFIVDHLPILNQQDTINTPLLTEPGQDFMVRMLREAPQPVMLMVTGPLTTVAVALEQAPDIEAKIEKIVWMGGALNVGGNVEKSLEAGQDGSAEWNVYWDAVSAAQVWQTQIEIIMCPLDLTNNVPVTSDIVYKMGKQRHYPVSDLAGQCYALVIPQDYYFWDVLATAYLGHPEFYQLREWETEIITTGVSQGRTKVVPSGRKIYAMDTVDKEAFYAYILQQWAR
>NC_019676.1|WP_015113768.1|3461722_3462154_+|nucleoside-deaminase
MDEFMQAAIAEAKQGRQEGGIPIGSVLIKDGKIVGRGHNKRVQDSDPVTHAEIDCLRNAGRIGSYRGTTLYSTLMPCYLCAGAVVQFGIKKVIAGESRTFPGAKEFMISHGVEVIDLNLDECEQMMSEFIQTNPELWNEDIGK
>NC_019676.1|WP_015113769.1|3462198_3463119_-|ribokinase
MSIIVFGSINIDLVATAPHLPTSGETLLGNDFFQVPGGKGANQAVALARLGIPTQMVGRVGSQGFGAELLNNLQTAGVQTENILLDETVSSGIAIIIVDDAGQNQIVVIPGANGKVNQADVERLSPLLPTAKALLLQLEIPLSAVVAAAKAGRNANITVILDPAPAQSNLPAELYPLVDIITPNEVEAGQLVGFAVDSPESAAKAGAVLLQKGVKSAIVKLGAKGVVCTTTEETFFVPAFSVNVVDTVAAGDAFNGGLAAALYTGMTLHQAVIWGATAGALATTKLGAQTSLPDRFTFEAFLKEKV

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Crispr_ID: NC_019676_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_12

3446755-3448198

Orphan

I-D,II-B

Consensus_repeat	Method
AATTG----------CAATTCAAACTAATCCCTATTAGGGATTGAAAC	PILER-CR
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CRT
AATTG----------CAATTCAAACTAATCCCTATTAGGGATTGAAAC	PILER-CR

19 spacers

The CRISPR arrays of NC_019676_12

>merge|NC_019676|12|3446755-3448198|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACCTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATCAAATCAGTTAAAGACCCTTACTGGGATGAAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTGGCCGTCCTTCAAAATATGGTGAGCCTTCAAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGTAGTCGCCTGATTGGGGGCGGATTGCCGGATAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAACCTACCCAGAGTCAGCGTAGGTTACTAGGCTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCGTTGTTTATCGCAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAAGAAGCGCTCGACGTGATGAGGTAGTAGACAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGCGCAATCGAAAAACTCTATTAAGGTGTAATAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACCTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGACACTAAAGTTGCCAACAATAAAGAGTTTATCAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAGAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACACTATCGACTATTTCATACATTAAATAATTTTTGAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATTTTCTACTATTAAGCCTGAGCCTTTAACTCAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGCTTCTGGCATCACAGCTTTAAATGCTCAGATAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA

>NC_019676|12|7|3446755-3447237|PILER-CR
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAACCTACCCAGAGTCAGCGTAGGTTACTAGGCTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCGTTGTTTATCGCAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCGCAATCGAAAAACTCTATTAAGGTGTAAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GACACTAAAGTTGCCAACAATAAAGAGTTTATC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTATCGACTATTTCATACATTAAATAATTTTTGA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT


>NC_019676|12|11|3446755-3448198|CRISPRCasFinder
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAACCTACCCAGAGTCAGCGTAGGTTACTAGGCT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GATTTTGATTTCCACGAAGCGTTGTTTATCGC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCGCAATCGAAAAACTCTATTAAGGTGTAAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GACACTAAAGTTGCCAACAATAAAGAGTTTATC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTATCGACTATTTCATACATTAAATAATTTTTGA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA

>NC_019676|12|8|3446755-3448197|CRT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAACCTACCCAGAGTCAGCGTAGGTTACTAGGCT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GATTTTGATTTCCACGAAGCGTTGTTTATCGC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCGCAATCGAAAAACTCTATTAAGGTGTAAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GACACTAAAGTTGCCAACAATAAAGAGTTTATC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTATCGACTATTTCATACATTAAATAATTTTTGA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC

>NC_019676|12|8|3447434-3448197|PILER-CR
	CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAACCTACCCAGAGTCAGCGTAGGTTACTAGGCTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGATTTTGATTTCCACGAAGCGTTGTTTATCGCAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCGCAATCGAAAAACTCTATTAAGGTGTAAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GACACTAAAGTTGCCAACAATAAAGAGTTTATC
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACTATCGACTATTTCATACATTAAATAATTTTTGA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT
AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113761.1\|3456676_3457273_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_019676.1\|WP_015113757.1\|3443690_3444941_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_019676.1\|WP_015113750.1\|3437399_3437885_-\|allophycocyanin-alpha-B-subunit-apoprotein	unknown	unknown	gnl\|CDD\|381265
NC_019676.1\|WP_015113764.1\|3458537_3459116_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113762.1\|3457347_3458037_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_019676.1\|WP_157374034.1\|3460456_3460762_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044500813.1\|3458014_3458455_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_019676.1\|WP_015113752.1\|3439807_3440257_+\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|225083
NC_019676.1\|WP_015113755.1\|3441115_3442507_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NC_019676.1\|WP_015113751.1\|3438016_3439375_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|129571
NC_019676.1\|WP_015113769.1\|3462198_3463119_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_019676.1\|WP_015113765.1\|3459155_3460460_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_019676.1\|WP_015113754.1\|3440744_3441113_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_157374228.1\|3440318_3440534_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113758.1\|3445033_3445405_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_019676.1\|WP_015113768.1\|3461722_3462154_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_019676.1\|WP_015113756.1\|3442556_3443300_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113759.1\|3445430_3446396_-\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NC_019676.1\|WP_015113760.1\|3449583_3456228_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236848
NC_019676.1\|WP_015113767.1\|3460781_3461705_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239113

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113761.1\|3456676_3457273_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.58129e-132
NC_019676.1\|WP_015113757.1\|3443690_3444941_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.04713e-125
NC_019676.1\|WP_015113750.1\|3437399_3437885_-\|allophycocyanin-alpha-B-subunit-apoprotein	gnl\|CDD\|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	7.35473e-104
NC_019676.1\|WP_015113765.1\|3459155_3460460_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_019676.1\|WP_015113762.1\|3457347_3458037_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	6.78187e-77
NC_019676.1\|WP_044500813.1\|3458014_3458455_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.6765e-51
NC_019676.1\|WP_015113752.1\|3439807_3440257_+\|anti-sigma-regulatory-factor	gnl\|CDD\|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	2.24976e-32
NC_019676.1\|WP_015113751.1\|3438016_3439375_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|129571	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification].	5.34496e-177
NC_019676.1\|WP_015113769.1\|3462198_3463119_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.89958e-127
NC_019676.1\|WP_015113755.1\|3441115_3442507_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_019676.1\|WP_015113758.1\|3445033_3445405_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.99034e-09
NC_019676.1\|WP_015113768.1\|3461722_3462154_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.85063e-45
NC_019676.1\|WP_015113759.1\|3445430_3446396_-\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	3.65475e-122
NC_019676.1\|WP_015113760.1\|3449583_3456228_-\|HAMP-domain-containing-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.36632e-69
NC_019676.1\|WP_015113767.1\|3460781_3461705_-\|nucleoside-hydrolase	gnl\|CDD\|239113	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. .	1.79795e-112

>NC_019676.1|WP_015113759.1|3445430_3446396_-|acetamidase/formamidase-family-protein
MTHHILKATKETVHLGGFSHLLTPALTIDSGDTIDVETYTGYYIYDKAPPEFLTPEFVDICQNLPPERKIAGGPHLLTGPIYVRDAEPGDVLEVKLEAIAPRLPVGFNAIRPGWGALPEQFTQPALRFIPLDLANNIAEFPANSGIKIPLKPFFGILGVATPTSDRNSIPPGNYGGNIDNRELQAGSRIFLPIYVPGALFSLGDGHSAQGDGEVNVTAIETSMNGKISLKLRKDLSLTTPIAETPTDIITMGFAETLDAALEQALKNMIAFLEGFANLSAEDAYVLCSLAVNFRITQVVNSPQKGVHGMLPKSILSPKIIL
>NC_019676.1|WP_015113758.1|3445033_3445405_-|sulfite-exporter-TauE/SafE-family-protein
MSNILVQMLLIGLAAGVAGGMFGIGGGAIMVPAMVLLLGMDQKFATGTSIAAQILPIGILGAAVYHRSGNINIKYAVMIALGLVVGNLFGALFANQPFISSETMKKLYGIFLLLIGGRYLFFR
>NC_019676.1|WP_015113757.1|3443690_3444941_+|trypsin-like-peptidase-domain-containing-protein
MQNQIPDGNNPLNSNLDTKYRKQASWKKAAASLSLVLLGSGMTLTGGYLANHKSQVSESASNLALSRVNAAPPIVAGTDPNFVTQVVQKVGPAVVRINSSRTVKTQLPEEFNDPLLRRFFGSQLPEAQQRVERGTGSGFIISDDGQILTNAHVVDGADTVTVILKDGRSFQGKVLGKDELTDVAVVKIQASNLPTVSVGNSDQLQPGEWAIAIGNPLGLDNTVTTGIISATGRSSNQIGASDKRVDFIQTDAAINPGNSGGPLLNARGEVIAMNTAIIQGAQGIGFAIPIATAQRIANQLISTGKVEHPYLGIQMIGLTPQLKQNINSDPNSGLSIDEDKGVLVVKVMPNSPAAKAGLRAGDVIQKLEGNAVTDAESVQKAVDKSRIGGDLRLELRRNGQTVNLSVRPGAFPSQVQ
>NC_019676.1|WP_015113756.1|3442556_3443300_-|hypothetical-protein
MINRHQFSQSLAFLSLLAALGIDLVIPQVVAQTSIKTSFAKSVAFTCNDSETSIKAKNGPKISIGGKTIYIGYQQVSSQNQDPRIIRFDNGVKKWCRSDYETTIDDGRGYGLLWDGGNVLYGVFSSTGSQTGNDFRRFAKNGWLSSYGNGGGAKVAVIAKINPTNGSVSTATFVTAKKPNDGKTNSLAITNLSWNGTTLKVLADSWWSPRRADKNSLTCTGSSPYKYTAIFTGDLTKVNSASAVNCR
>NC_019676.1|WP_015113755.1|3441115_3442507_+|asparagine--tRNA-ligase
MVNRRIAEILRSGQPDESLVVQGWVRTKRDLKGFAFIEVNDGSSLANLQVVIHQDLPDFEAILKKLNTGASVEVNGVLVASQGKGQRIELKAEAVKVYGEADPETYPLQKKRHSFEFLRTIGHLRSRTNSFGAVFRVRNACSTAIHQFFQERDFLWVHTPIITASDCEGAGELFSVTSLDLKNIPRTDNQAVDYTQDFFTKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEGDMDLAEAFLKHIFNYVLEKCPEDMEFFNQRIDDTVLATAENIINNQFERLTYTDAIKLLEKADVKFDYPVSWGLDLQSEHERYLAEQLFKKPVIVTDYPAQIKAFYMRLSDDEKTVRAMDILAPKIGEIIGGSQREERLDVLERRVIAQDMKPEDLWWYLDLRRFGTVPHAGFGLGFERLVQFMTGMGNIRDVIPFPRTPQNAEF
>NC_019676.1|WP_015113754.1|3440744_3441113_+|hypothetical-protein
MKPPRKSHNSSSEENQSPDFEQELAQVERSLITIKERYTQIKLDQEQKAQWQQRQQELKENKPQTPEIKAELRQIQKQLELLELNLESQLFSWRSLKKPFWQVIRFGGMGVIIGWILKSYAG
>NC_019676.1|WP_157374228.1|3440318_3440534_-|hypothetical-protein
MERLTISPNDWHRLKSNRNSRASEQAAAALVFLLKNQPQEALARLEQAAGWLDKSISAPPCPTHGHKNSEV
>NC_019676.1|WP_015113752.1|3439807_3440257_+|anti-sigma-regulatory-factor
MISISLRPVGRYWGTLSFASTLYLCPILDLLLAEIPAKLQAELRLGLQEALVNAAKHGNNLDPSKRVVVRFSLIDNQYWWVISDQGQGFKPEPSSDEDPTDYLPSDESESGRGLCLLHQIFDQVQWSRKGTELRLCKQMENRPRLSLRR
>NC_019676.1|WP_015113751.1|3438016_3439375_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTNIWKQGELIEIAIADLTDTGDGVGRYEERVVFVPDTVPGDRVQVRLLHVKPKYAHGKLIQLLHPSPHRIRPSCIVADKCGGCQWQHINYEYQLEAKRNQVIQALQRIGGFTAPSVDPVLTALSPLGYRNKSTYPVSVSTTGQVQAGYYQKGSHQLVNLNQCPVQDSRLNPLLAEVKQDIQQRGWKIYNEQQHQGQIRHLGLRIGRRTGEMLLTLVVKDWKLAGITEQAQEWLKRYPQLVGVALNRNPERTNAIFGAETRTIAGVPYLKEKFADLEFQVRPDTFFQVSTETAEALLEVIQSELNLQGDEVLVDAYCGIGTLTLPLAQRVRQAVGLELQAEAVEQAILNADRNSIHNVTFQVGAVENLLPQMGIIPNVVILDPPRKGCDRSVIDSLLRSKPARIVYVSCKVATLARDLKLLCQGGTYTLTRVQPADFFPQTSHVEAAAFLVL
>NC_019676.1|WP_015113750.1|3437399_3437885_-|allophycocyanin-alpha-B-subunit-apoprotein
MTVISQVILKADDELRYPSSGELKSIKEFLQTGEQRTRIAATLAENEKKIVQEATKQLWQKRPDFIAPGGNAYGERQRALCIRDFGWYLRLITYGVLAGDKEPIEKIGLIGVREMYNSLGVPVPGMVEAINSLKKASLDLLSAEDAAAASPYFDYIIQAMS
>NC_019676.1|WP_015113760.1|3449583_3456228_-|HAMP-domain-containing-protein
MTTEQLTRETDNLDLKQLLKTLTAVKKGDFSVRMSVDQTGLAGKIADTLNDIIDQNERMALELQRIGNVVGKDGKITERASMGTVRGSWSDCVNSVNTLITDLVQPTAETTRVIRAVANGDLSQTIPTELDGKALKGEFLQTANIVNTMVDRLGSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVNVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVKGEILELKNTINIMVDQLSSFVSEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVKGEILELKNTINIMVDQLSSFVSEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGSEGKLGVQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIADVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLSSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTGAVNMMAGNLTDQVRSIAEVATAIANGDLSKKITVQVKGEILELKNTINIMVDQLNSFASEVTRVAREVGSEGKLGVQADVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAAVTTAVANGDLSKKISVDVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDSVNFMAGSLTAQVRNIADVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAYVRGVGGTWKDLTDNVNSMAGNLTAQVRNIAEVTKAVANGDLSKKITVDVKGEILDLKNTINTMVDQLSSFASEVTRVAREVGTEGKLGGQAVVQGVAGTWKDLTDNVNSMAGNLTAQVRGIARVVTAVANGDLKRKLMLDAKGEIETLAETINEMIDTLATFANQVTTVAREVGIEGKLGGQARVPGAAGTWKDLTDNVNELAATLTTQLRAIAEVATAVTKGDLTRSISVEALGEVAILKDNINQMIANLRETTQKNTEQDWLKTNLAKFTRMLQGQRDLETVSKLILSELAPLVGAQHGVFYLMDAGEQQQAYLKLLSSYAYRERKHLANRFHLGEGLVGQCALEKERILLTEVPMDYVKISSGLGESAPLNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAEELQTQQNELKETNKRLEQQAQSLKTSEDLLRTQQEELQQTNAELEEKAELLAQQKKEVEWKNREIEQARLSLEEKAAQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLTDNIDGNLSTKQVEYSRTIYSAGNDLLALINDILDLAKIESGTMSIDMSQMLVTDLREQTDRTFRQIAQDKGLNFTIELGAELPKAIYTDPKRLQQVLKNLLSNAFKFTDRGEVSLRIDVAKQGWSINQETLNRAPIVVAFSVVDTGIGIAPEKQKVIFEAFQQADGTTSRKYGGTGLGLSISREIARLFGGEITLVSSLTQGSTFTFYLPQFNSDSAFITPELTSQLVPTQHSPLSTPHSALPTQHGLNTPLPLTALLEDDRIDINNGDRVLLIVEDDIHFARILLEMAQQQGFKVIAAQSGSNGLVLAQQFQPVGILLDIRLPDMDGWTVLDRLKHDPNTRHIPVHIMTVEEGKRRSLQLGALAYLQKPASSESISEALNKIKGFVERRVKSLLVVEDDDTQRHSIVELIGNSDVATTAVATGAEALEAIISQQFDCLVLDLGLPDMNGFELLQQIKQQPNGEFLPIIIYTGIELNKAQEAELRRITETIIVKDVRSPERLLDETTLFLHRVQAALPEPKRQILEQLHSRDYILANKKVLIVDDDVRNIFALTSMLERYHMQVIYAENGRDGITMLETTQDIDVVLMDVMMPEMDGYETTRLIRQNERFRALPIIALTAKAMQGDREKCIESGASDYITKPVDIEQLLSLLRVWLYR
>NC_019676.1|WP_015113761.1|3456676_3457273_-|urease-accessory-protein-UreG
MTAFRVGVAGPVGSGKTALVDALCKALRDRYHLAVVTNDIYTQEDAQFLVRSQALNSDRILGVETGGCPHTAIREDASMNLAAIEQLEERFDNLDLVFLESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKTDLAPFVGADLNVMERDAKKMRGEKPFIFTNLKTQSGLTDVVSFVSKHIT
>NC_019676.1|WP_015113762.1|3457347_3458037_-|urease-accessory-protein-UreF
MDTITLTDIHFLGILQLASPALPVGAYSYSEGLETLVEDGIIANQETLKHWLTSELRYGAIRLEAAVMLRAAESAKMGNLETLSYWNHWLSAARETQELRNSSWQMGRSLAQLLGKLQPELLPTINSVGNPCNYAIAFGIAVAHWQIHLNAALLAYLHSWTSNLITAGVKLIPLGQTAGQALLLDLQPLISATLQEILVLEDDELSCCSWGLSLASMQHETQYTRLFRS
>NC_019676.1|WP_044500813.1|3458014_3458455_-|urease-accessory-protein-UreE
MILTQRKPPDADAVVSLTLALTAEERTRSRHRFEMADGQVVFLRLPRGTVLRDGDILQDENDGSLMRIVAKPEPVLTVSATSSLLLMRAAYHLGNRHVAVEITPSYLRLSPDGVLCGMLVQLGLEITEEIAPFQPELGAYGHHHPH
>NC_019676.1|WP_015113764.1|3458537_3459116_+|hypothetical-protein
MAKRKKSNLQWIKETLDLQPDHHWESPSGYKIFVANRGAVRFNVPQNWVFEPQEKSFKFMDKKPPKDDCCLEVSFNHLPPNDWTLFPLKATLKKVVEEDSRDVIEKGEVFTIKRQTARIVWTELKFIDVQAEPREAFSRICIGLGSNIQCLITFDFWADQAEQLTPVWDEAMRSLTLGLYIRDPRTGLAFPD
>NC_019676.1|WP_015113765.1|3459155_3460460_-|glutamate-5-semialdehyde-dehydrogenase
MTIVEVGSSLVEIAGKTRAAASKLAILSTEAKNQAIAAIAQGLESAQEEILQANVADCQAAAAEGIAKPLYKRLQLDEHKLRDAIAGVRDVGKLADPIGKVQIHRELDTGLILKRITCPLGVLGIIFEARPEAAIQIVSLAIKSGNGVILKCGKEAVRSCEAIVKAIKQGLSQTDVSPDAVQLLTTREETVGLLKLDKYVDLIIPRGSNSFVRFVQENTRIPVLGHADGICHAYIDQAADINKAVEITVDAKIQYAAACNAIETLLVHQAIAGEFLPQVATALAENHVQLKGDQRTLEILPNIAPASEIDWETEYSDLILSIKIVDDLEDAIAHINQYGSRHTDVIITEDIATAEAFFGLVNSAGVFHNCSTRFADGFRYGFGAEVGISTQQMPPRGPVGLEGLVTYKYQMTGNGHIVASYTGANAKAFIHRDL
>NC_019676.1|WP_157374034.1|3460456_3460762_-|hypothetical-protein
MTSDIVDLITRIVNATADIVDVITCIVNVTVDIVDVITCIVNVTADIVDATTGKNNSLYWRERFGEDFFCSLSIGIIQESNQIAIGWKINVSAIIKGYFLI
>NC_019676.1|WP_015113767.1|3460781_3461705_-|nucleoside-hydrolase
MSKQLVLMDHDGGVDDYLATMLLLTMDHIELLGVVVTPADCYVEPAVSATRKIIDLMGFSHIPVAESTVRGINPFPRLYRRDSFIVDHLPILNQQDTINTPLLTEPGQDFMVRMLREAPQPVMLMVTGPLTTVAVALEQAPDIEAKIEKIVWMGGALNVGGNVEKSLEAGQDGSAEWNVYWDAVSAAQVWQTQIEIIMCPLDLTNNVPVTSDIVYKMGKQRHYPVSDLAGQCYALVIPQDYYFWDVLATAYLGHPEFYQLREWETEIITTGVSQGRTKVVPSGRKIYAMDTVDKEAFYAYILQQWAR
>NC_019676.1|WP_015113768.1|3461722_3462154_+|nucleoside-deaminase
MDEFMQAAIAEAKQGRQEGGIPIGSVLIKDGKIVGRGHNKRVQDSDPVTHAEIDCLRNAGRIGSYRGTTLYSTLMPCYLCAGAVVQFGIKKVIAGESRTFPGAKEFMISHGVEVIDLNLDECEQMMSEFIQTNPELWNEDIGK
>NC_019676.1|WP_015113769.1|3462198_3463119_-|ribokinase
MSIIVFGSINIDLVATAPHLPTSGETLLGNDFFQVPGGKGANQAVALARLGIPTQMVGRVGSQGFGAELLNNLQTAGVQTENILLDETVSSGIAIIIVDDAGQNQIVVIPGANGKVNQADVERLSPLLPTAKALLLQLEIPLSAVVAAAKAGRNANITVILDPAPAQSNLPAELYPLVDIITPNEVEAGQLVGFAVDSPESAAKAGAVLLQKGVKSAIVKLGAKGVVCTTTEETFFVPAFSVNVVDTVAAGDAFNGGLAAALYTGMTLHQAVIWGATAGALATTKLGAQTSLPDRFTFEAFLKEKV

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Crispr_ID: NC_019676_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_14

3559800-3559888

Orphan

Consensus_repeat	Method
AATGGCGGAAATTTTTCTGATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_14

>merge|NC_019676|14|3559800-3559888|CRISPRCasFinder
AATGGCGGAAATTTTTCTGATCCGTCATAGTTTATACCATGATCAGAAAACTCCAAAACCCTTGTAATTGGCGGAAATTTTTCTGATCC

>NC_019676|14|13|3559800-3559888|CRISPRCasFinder
AATGGCGGAAATTTTTCTGATCC	GTCATAGTTTATACCATGATCAGAAAACTCCAAAACCCTTGTA
ATTGGCGGAAATTTTTCTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015113855.1\|3564714_3564966_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113849.1\|3562208_3562562_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113853.1\|3564002_3564179_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113848.1\|3561933_3562212_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113837.1\|3547994_3548405_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113856.1\|3565248_3565500_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113836.1\|3547253_3547697_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113852.1\|3563519_3563762_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019676.1\|WP_015113843.1\|3556404_3557580_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NC_019676.1\|WP_015113845.1\|3558951_3559179_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113847.1\|3561694_3561937_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113844.1\|3557743_3558928_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_019676.1\|WP_015113854.1\|3564175_3564367_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113842.1\|3555583_3556171_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019676.1\|WP_015113839.1\|3550111_3551050_-\|phosphoribulokinase	unknown	unknown	gnl\|CDD\|180975
NC_019676.1\|WP_015113850.1\|3562581_3562815_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015113851.1\|3562924_3563266_+\|KGK-family-protein	unknown	unknown	gnl\|CDD\|370166
NC_019676.1\|WP_015113841.1\|3553206_3554946_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019676.1\|WP_015113838.1\|3548682_3549396_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019676.1\|WP_015113840.1\|3551468_3553070_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375554

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015113844.1\|3557743_3558928_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.84814e-20
NC_019676.1\|WP_015113841.1\|3553206_3554946_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.43072e-44
NC_019676.1\|WP_015113839.1\|3550111_3551050_-\|phosphoribulokinase	gnl\|CDD\|180975	PRK07429, PRK07429, phosphoribulokinase; Provisional.	0
NC_019676.1\|WP_015113852.1\|3563519_3563762_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.62089e-09
NC_019676.1\|WP_015113842.1\|3555583_3556171_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.63553e-24
NC_019676.1\|WP_015113851.1\|3562924_3563266_+\|KGK-family-protein	gnl\|CDD\|370166	pfam08872, KGK, KGK domain. This presumed domain is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.	3.1708e-15
NC_019676.1\|WP_015113843.1\|3556404_3557580_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_019676.1\|WP_015113838.1\|3548682_3549396_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.55739e-20
NC_019676.1\|WP_015113840.1\|3551468_3553070_+\|hypothetical-protein	gnl\|CDD\|375554	pfam18105, PGM1_C, PGM1 C-terminal domain. This is the C-terminal domain found in PGM1 present in Streptomyces cirratus. PGM1 is a gene product that links precursor peptides together to form the antibiotic Pheganomycin.	5.23309e-07

>NC_019676.1|WP_015113845.1|3558951_3559179_-|hypothetical-protein
MTDFSSELNPVILEHRCPECHDCNLYFLPHDPGTTFDVECDTCGWEGYFSQKEVAEVMKNHIPMQYWEIIDNWQD
>NC_019676.1|WP_015113844.1|3557743_3558928_-|tyrosine-type-recombinase/integrase
MARNHADQWINTDPETNRLSLRFRVRGFAKQFYLSSGLVDTPVNREIVRLRRDLIKSDIALERFDGSLKSYCFNPIRNGIEACPVSNYPLSLGELWNRFTEFKKALLEPTTIKSNYGATARYIARLPTQDLRQAPQIRDWLLVNTTRRMAWELLVRFNECCVWGVDSGLITQNPFERLKIKKPRKSSEVSEQILAFTIEQRDLVIQGFESHRLHSHYAPLVKFLFYTGVRLGEAFALTWSDVNADCTKISITKSCNLYKVRKGTKNGKRRIFSTVPNSKLHQLLLELKPPAGGAASKTIFISKQGTQMNGDALYNAWYGCPNKDKFYPGVVKELASEGLLPYLKPYSTRHTFATWAIASGITPDRVALLIGDEVSTVLKYYCHPNVVNFECPDF
>NC_019676.1|WP_015113843.1|3556404_3557580_+|amidohydrolase
MLSRIKDIATKLAPRLVEIRRHLHSHPELSGQEYQTAAFVAGVLSSSGLHVQEGVGKTGVIGEVQGTGADHRLLAIRTDMDALPIQERTGLEYASRTNGVMHACGHDVHTTVGLGTAMVLSQVADELGGKVRFLFQAAEEIAQGAHWMVQDQAMKNVSAILGVHVFPSIPAGSIGIRYGALTAAADDLEITIIGESGHGARPHEAIDAIWIASQVISALQQAISRTQNPLRPVVLSIGKIQGGRAPNVIADQVQLWGTVRSLHPETRAHLPNWIENIVANVCHAYGAKYQVNYRQGVPSVQNDYSLTQLLQSAAEEAWSSDRVQVLPEPSLGAEDFSVYLDHAPGSMFRLGVGYKDRMINHPLHHPEFEVDESAILTGVVTMAYAAYKYWL
>NC_019676.1|WP_015113842.1|3555583_3556171_+|pentapeptide-repeat-containing-protein
MKLQIASLVALLVFTGLTEKALGLNQQDLEQLKTSGACPRCDLSGIDLSQSNLAGANLRGANLKGANLSQANLSNADLTGANLEGAVLKSANLTAASLTGTNLTSASLENSDLSFTGFIGANLTASNLLGAKLYLTNFRGANFRLTTLPVGNVTSDKPYWWSSERVIPKQCNKFKAGNTQGTTCYTQSEEVESQK
>NC_019676.1|WP_015113841.1|3553206_3554946_+|serine/threonine-protein-kinase
MSHIPQRAVHCINPDCQRPYPQPWGNKFCNSCGALLQLLDRYVPLEPLGSGGFAQIYTVWDEKTQTEKVLKVLVEASPKAQELFTQEASVLIGLQHPGVPRVEADGFFQINLTSPKPRQLACLVMEKINGPTLDEILNNYPQGCPENLIFNWFTQAVKILQELHKCQIIHRDIKPSNLMLRIPASTAPPTQAKTGWEQLVLIDFGGVKQINAAMQRRESSSTRLFSSGYSPPEQVTGGNVGPAADFYALGRTMIELLTGKYPPELEDMQTGELRWRNLVNVNAQFADLLDAMVKEDVRSRPTNAAIILKRLAKINKPDKPGLFSQRQNSTPSNYFILLIQAIERAFADFIQAIGQTILFIAKALFNIIQACLAIIWAMLLSSLGACFGTIIGFFIAYRTILGDRIVELILGQLPGLIPHSQTNFGADILVFISAGLGTAWGLTLSGCFSQRRRFLVASIMGMISYGFGWLFWQLISPKQSSDGLIVMIAVSIFLLSLSFGFRSHHIVYALVAAVGTALIFSGLFILGFPATVFHFSPQALWSELGLPLALFALVAIFMSFWLGVSHYLIIPGLRFLGWR
>NC_019676.1|WP_015113840.1|3551468_3553070_+|hypothetical-protein
MVTLNVSELDQVDQFRRLQSILRDRWKTIELFDNSEADIVVIPSLSIDQCELRKIAGCEHYEERLLFSLMRLRNPRTRLIYITSMPLHPSIIDYYLQLLPGIPFSHARNRLLLLSTYDSSLQPLSQKILDRPRLLDRIQQALRLEKSFMICYNSTHLEAELSLKLNVPLYAAAPDLQIWGTKSGSRQIFAESKVPHPDGSVRVWNSQDLAAAACDLWERQPTLKRMVVKLNEGISGEGNALLDLSPIMNLAPGQATGEQRIAAISDRFSTLRFQAKQETWANFSGRITELGAIVEAFVEGEIKLSPSVQGRITPTGEVEILSTHDQILGGPDGQIYLGCRFPADESYRLPLQQLGLKVGRQLAEKGALERFGVDFIAVDQGDNNWDIQAIEINLRKGGTTHPFMTLKLLTNGRYDLSTGLFYSQQGRPKYYVATDNLQKDRYRGLLPNDLMDIIAHHRLHFDSGTETGTVFHLMGCLSQFGKLGLTSIGDSPQQAEDIYNKVVNVLDEETRSDNQNFPLFSDYTFPIAWDGYS
>NC_019676.1|WP_015113839.1|3550111_3551050_-|phosphoribulokinase
MSRPIILGIVGDSAAGKTTLTRGIAQVLGPENVTLICTDDYHRYDRQQRSEIGITALHPDCNHLDIMQQHLSLLRTGQPILKPVYSHKTGSFEPPLYIKPNKFVIIEGLLGYSTRAARECYDVKVYLAPPEPLRAKWKVKRDTLKRGYTPEQVLAELDKREPDSEQFIRPQRQWSDIVVSFYPPSGEVEEANGHLNVRLVLRPTIPHPDFTPIINLSNGVSGSAIRLGLDRDMNKPVDVLEVDGHATLEQVNKLEHIICSDMPHLRSVCDRESNPELGKIAGTTGETLQSYPLALTQLIITYHMLKATQIYQ
>NC_019676.1|WP_015113838.1|3548682_3549396_-|tetratricopeptide-repeat-protein
MNSHSFLTSGDQQNNCYQYVVNDTLGFTRHEANGSVQSVVQESYLRSCALKSAKQGDYNQAIALLNELIRRYPQNAADYNNRGLIYFQSGEKQKAFCDYNTALDLNPNLASAYNNRANYYAACGELAAALADYDQAIDLNPRYVRAWINRGITFRDLGQYEEAIENLEVALLFGQLEAHIWAERGRTYHLWGDWNCAIADYRRAMAKLPTLNNSVDVSGYRLRLQIETWLNDLLSEK
>NC_019676.1|WP_015113837.1|3547994_3548405_+|hypothetical-protein
MNAFQPSRQPLQPIQQPRTVPRPKRHLRQRSHQIMALETTLKIGVNLAILGAAASALTQLLPYHWSQQGRLREVRTEVKIMEGRVSTLQAEFVRNFDPRQTKAITEQQGYRFAPNQRPIVLMNQDGKEIDVINSLP
>NC_019676.1|WP_015113836.1|3547253_3547697_+|hypothetical-protein
MLYLAQVHKNEFLDQYQLRLLARQETDQLWAMIPEEAFILLGKGKTISEGLLVLVELSATGEIAKLEEASNWVMNLVQAYLTTGITPELLQQEAERAEQWRQSLTLQNQDLARRSLELEARREQIQALEESLKRERNGNHKDEAADS
>NC_019676.1|WP_015113847.1|3561694_3561937_-|hypothetical-protein
MTNNKNLQKTPEQRIEKIERFVDILRWQLINSLEASYALAAELAILKGQSPDSNEICLKLRREYDALNTLRPINHQPKHY
>NC_019676.1|WP_015113848.1|3561933_3562212_-|hypothetical-protein
MSREEEIKAAIVVTPETILFASPEMNSAAEQASWRLGEFVDFLDALDPKLERHESTLLAAAIIQSLPELINTNPELQAGIKQLAQEIRANRK
>NC_019676.1|WP_015113849.1|3562208_3562562_-|hypothetical-protein
MQVTLRNQNDMAITDLEIPESYSYPDVIVLDDKAYIRHLRTDDYIEADCYIAESDEIEKAYQSLVNYINSQIPSGSDGNARVLTTKILAGLPQVFTDHPEFLIEAVAQAGKTKKVEA
>NC_019676.1|WP_015113850.1|3562581_3562815_-|hypothetical-protein
MLKAILQSNGQVVAEKELVAVARFSSAVYLDGGFYILHRIEGTKAIYRAINYYRFPDTPIEEDEQFDPKDFPGYYSP
>NC_019676.1|WP_015113851.1|3562924_3563266_+|KGK-family-protein
MSGKIVLDDSDVVSIFTGGSNPAIYTFGLGSGSTFKSSELIKAAKTWVAKPGTENNSYCWWFNPDGLKCQVLFANEIGWKPGKVRIRLEFIPDEPKVPPQESPLDDLRSNLDI
>NC_019676.1|WP_015113852.1|3563519_3563762_+|helix-turn-helix-transcriptional-regulator
MTEGEKREPLTPMSLRKRVGLTQRKVAQELDIRSQTVGDWEKGGVPHLTPSKMKRLCEIYQCSLDDLIEAFEMRNSAHTS
>NC_019676.1|WP_015113853.1|3564002_3564179_+|hypothetical-protein
MQPTSTQAINAIRVCAQLTRVYKQIDLVRLDERTNNIYILADNSLEAEITPTGEVLWL
>NC_019676.1|WP_015113854.1|3564175_3564367_+|hypothetical-protein
MTKPNFDEMPLDQLKAYILEHRNDDEAFSVYIARRRAQSPNVVPMTIEEAEADLQKRFGQQAS
>NC_019676.1|WP_015113855.1|3564714_3564966_-|hypothetical-protein
MPRNFAEGETQMNFRIPEDKKEAFIKKAKENGTSASRLLLEFIDSYLGLLPRRDDEIDKLSKKVAELEDFRDRTEKILGELAA
>NC_019676.1|WP_015113856.1|3565248_3565500_+|hypothetical-protein
MSNPTKPLVHIQETEFELVINLDSVNYLARMGTSVYIHFKGEAEKLALRGPAGDAAWRIFRNSSVTIYQAPPAEVIEPNTSND

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Crispr_ID: NC_019676_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_15

3760767-3761456

Orphan

Consensus_repeat	Method
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CRISPRCasFinder
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CRT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	PILER-CR

9 spacers

The CRISPR arrays of NC_019676_15

>merge|NC_019676|15|3760767-3761456|CRISPRCasFinder,CRT,PILER-CR
TCCCCTTTCCCCTTGTCGGGGAAGTGGTTTGGATACCAGCGCTCTGCTTTCGCAACTCCATCCTCAGCCCACAGAATGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACAGGTGCAAAATGCCACTGGGGAAGCTAACGTTCGGTTTTCATCCCCTTGCGGGGGAAGTGGTTTGGATACCTACTCTGTTAGACAGTGAAAATGACTACGGACTTACATAGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACAACATCTTAAAAAATGAACAATTATTAACAATTGTGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATATAGTTATTGCCGCCCTTTCAGAAATGGGCGCAACTTATGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACTTGACAAGTGTACGGTAAATCAAGCTGGCGGTACAGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACCGCTGTAATGACCGGATCATCTGAAAACGAGGTAGGGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACTTGTAATTCTTTTTACCGCCAATATCATGGCGGTACAGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATACTAGAATTTAGGCTAGGGTATGTATCCTACGGGAGCGTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC

>NC_019676|15|14|3760767-3761456|CRISPRCasFinder
TCCCCTTTCCCCTTGTCGGGGAAGTGGTTTGGATAC	CAGCGCTCTGCTTTCGCAACTCCATCCTCAGCCCACAGAAT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AGGTGCAAAATGCCACTGGGGAAGCTAACGTTCG
GTTTTCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CTACTCTGTTAGACAGTGAAAATGACTACGGACTTACATA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AACATCTTAAAAAATGAACAATTATTAACAATTGT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAT	AGTTATTGCCGCCCTTTCAGAAATGGGCGCAACTTAT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGACAAGTGTACGGTAAATCAAGCTGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CGCTGTAATGACCGGATCATCTGAAAACGAGGTAGG
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGTAATTCTTTTTACCGCCAATATCATGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TAGAATTTAGGCTAGGGTATGTATCCTACGGGAGC
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC

>NC_019676|15|10|3760767-3761456|CRT
TCCCCTTTCCCCTTGTCGGGGAAGTGGTTTGGATAC	CAGCGCTCTGCTTTCGCAACTCCATCCTCAGCCCACAGAAT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AGGTGCAAAATGCCACTGGGGAAGCTAACGTTCG
GTTTTCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CTACTCTGTTAGACAGTGAAAATGACTACGGACTTACATA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AACATCTTAAAAAATGAACAATTATTAACAATTGT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAT	AGTTATTGCCGCCCTTTCAGAAATGGGCGCAACTTAT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGACAAGTGTACGGTAAATCAAGCTGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CGCTGTAATGACCGGATCATCTGAAAACGAGGTAGG
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGTAATTCTTTTTACCGCCAATATCATGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TAGAATTTAGGCTAGGGTATGTATCCTACGGGAGC
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC

>NC_019676|15|10|3760844-3761456|PILER-CR
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AGGTGCAAAATGCCACTGGGGAAGCTAACGTTCG
GTTTTCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CTACTCTGTTAGACAGTGAAAATGACTACGGACTTACATA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	AACATCTTAAAAAATGAACAATTATTAACAATTGT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAT	AGTTATTGCCGCCCTTTCAGAAATGGGCGCAACTTAT
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGACAAGTGTACGGTAAATCAAGCTGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	CGCTGTAATGACCGGATCATCTGAAAACGAGGTAGG
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TTGTAATTCTTTTTACCGCCAATATCATGGCGGTACA
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC	TAGAATTTAGGCTAGGGTATGTATCCTACGGGAGC
GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114053.1\|3767978_3768083_-\|cytochrome-b6-f-complex-subunit-PetM	unknown	unknown	gnl\|CDD\|285308
NC_019676.1\|WP_015114039.1\|3752305_3754147_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_019676.1\|WP_015114043.1\|3757838_3758408_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019676.1\|WP_015114042.1\|3756702_3757842_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_019676.1\|WP_015114040.1\|3754187_3754430_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114046.1\|3762073_3762664_+\|chromophore-lyase-CpcT/CpeT	unknown	unknown	gnl\|CDD\|368789
NC_019676.1\|WP_015114048.1\|3764008_3764458_+\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|350353
NC_019676.1\|WP_015114037.1\|3749870_3750953_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308
NC_019676.1\|WP_015114044.1\|3759052_3759376_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114047.1\|3762727_3763525_-\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NC_019676.1\|WP_015114036.1\|3748903_3749806_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_019676.1\|WP_015114045.1\|3759422_3760658_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019676.1\|WP_157374052.1\|3761812_3761971_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114052.1\|3766824_3767814_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|177093
NC_019676.1\|WP_015114038.1\|3750965_3752093_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_019676.1\|WP_015114051.1\|3765765_3766683_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|179456
NC_019676.1\|WP_015114054.1\|3768298_3769384_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|235066
NC_019676.1\|WP_015114050.1\|3764894_3765581_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019676.1\|WP_015114041.1\|3754548_3756189_-\|DUF1565-domain-containing-protein	unknown	unknown	gnl\|CDD\|284923
NC_019676.1\|WP_015114049.1\|3764593_3764878_+\|DUF5132-domain-containing-protein	unknown	unknown	gnl\|CDD\|319213

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114053.1\|3767978_3768083_-\|cytochrome-b6-f-complex-subunit-PetM	gnl\|CDD\|285308	pfam08041, PetM, PetM family of cytochrome b6f complex subunit 7. This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta hemes and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidized plastocyanin.	1.28855e-05
NC_019676.1\|WP_015114039.1\|3752305_3754147_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_019676.1\|WP_015114043.1\|3757838_3758408_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.26256e-16
NC_019676.1\|WP_015114042.1\|3756702_3757842_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NC_019676.1\|WP_015114051.1\|3765765_3766683_-\|NAD(+)-kinase	gnl\|CDD\|179456	PRK02649, ppnK, NAD(+) kinase.	0
NC_019676.1\|WP_015114048.1\|3764008_3764458_+\|tyrosine-protein-phosphatase	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	1.80774e-28
NC_019676.1\|WP_015114038.1\|3750965_3752093_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.02458e-164
NC_019676.1\|WP_015114037.1\|3749870_3750953_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.43268e-123
NC_019676.1\|WP_015114047.1\|3762727_3763525_-\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.2363e-90
NC_019676.1\|WP_015114036.1\|3748903_3749806_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.03842e-85
NC_019676.1\|WP_015114046.1\|3762073_3762664_+\|chromophore-lyase-CpcT/CpeT	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	7.47443e-106
NC_019676.1\|WP_015114049.1\|3764593_3764878_+\|DUF5132-domain-containing-protein	gnl\|CDD\|319213	pfam17195, DUF5132, Protein of unknown function (DUF5132). Proteins in this family are uncharacterized, but have been identified as members of a gene cluster for the synthesis of Ansamitocin.	1.12913e-08
NC_019676.1\|WP_015114052.1\|3766824_3767814_-\|SDR-family-oxidoreductase	gnl\|CDD\|177093	CHL00194, ycf39, Ycf39; Provisional.	0
NC_019676.1\|WP_015114045.1\|3759422_3760658_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.2479e-05
NC_019676.1\|WP_015114054.1\|3768298_3769384_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|235066	PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	0
NC_019676.1\|WP_015114050.1\|3764894_3765581_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.16677e-78
NC_019676.1\|WP_015114041.1\|3754548_3756189_-\|DUF1565-domain-containing-protein	gnl\|CDD\|284923	pfam07602, DUF1565, Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.	2.04663e-39

>NC_019676.1|WP_015114045.1|3759422_3760658_-|tetratricopeptide-repeat-protein
MLRRLCAIAIFSILLNNSFTLAAPKDPSQADKFPPSPLEITTPDPLVRSSANKEPLTLVEQLKLKAALDELNQQAAATLQAEDKVTAFEIWNREIRLRRYLGTIPEIQALSRVGAIAWNQNDRQQLFYINQRLQAIQKQALSPKTIAQQGVNVELLQTLGEAYQNVRSPKNALAVYNQILTAVRQRQDKTAELSTLQTIAELNLAWFDYPQAATTYQELLTLASAGGDRTSELTYLKQLAYIYQQGKQPQQAINTLNKLALLYTDPENILKIPQLKLAIAANYESLAKENPNLIQEAFNNYQQAYTTAWESQQFVIAAEALQKLIVLYRSQGQIDAALQTSQILIETQAKTSNSYGLMQAYDQIGQIYLQQKEYPQALSAFQQGLKLAQQLKHEESYFTQQIAKVSQESGQ
>NC_019676.1|WP_015114044.1|3759052_3759376_+|hypothetical-protein
MMKHYSLEWIETWCQENGWTELFVERRNNYWAFPPGGVMPEPIPSHVLRGIKAEKGLTFEERIWSMSAVFGTVVAVASTFILRCPMPLVVAFAFNAVTVAQLELEDV
>NC_019676.1|WP_015114043.1|3757838_3758408_-|pentapeptide-repeat-containing-protein
MFWLTGLTLLLASLLLCLIRLSKNHYTVITILTLLLLPSAFCLLPLAALAVDWTHPLSFSNAELARRDFSGQTLQAAEFSNANMEMANFTGADLRGAVLSASVMTKANLHQADLTNAMVDQVNLTGADLSDAVFKEALLLRALFTDVNIQGADFTDAVLDKAQIKELCSKASGVNSKTGVETRESLGCR
>NC_019676.1|WP_015114042.1|3756702_3757842_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKRVGVIGGGQLAWMMGDAAKKLGVELIVQTPSKFDPAVAIAQDTVFAAIDDAKATEILAQKSDVITFENEFVDLDALSLLANKGVCFRPRLEALSALLDKYHQRCYLRDLGLPVPQFFAIDDVENLTSQLEALSFPVVLKSRRHGYDGQGTFIIQDLASLQQKLAQTANQSQFLIEEFIPFERELAVIAARSVNGEVVSYPVVETQQEQQVCQRVIAPADITLNQAQQSQAIAHTLLNSLEVVGVFGIELFLTKDSKVLVNEIAPRTHNSGHFSIDACETSQFEQHLRAVCGLPLGNSNLHCQMAIMVNLLGYENSESDYQSQRQQLAAIPHATVHWYNKTESRPGRKLGHVTVLLDEHNPETANHLAHTLESIWYPS
>NC_019676.1|WP_015114041.1|3754548_3756189_-|DUF1565-domain-containing-protein
MPQTFYVNPLTGNSSNSGSQQAPFKTITQALKVATPDTTIQLTDGNYSVASGEVFPLTIPSGVQVIGNEANKGSSILIEGSGNYLSRTFAGQNVTFVMLDGGELRGVTVTNPASRGSGVWAESTTPTIANCTFKNCKREGVFATGDAKPVIQGNVFTENAANGIAIAKNSQGQIQDNTCIKTGFGIAISDTASPTLLNNKFTENRSGIVVSGNARPVLRNNVSENNTDDGLTVISTALPDLGSAASPGGNIFRNNAKFDLQNASSNQLISIGNQIDPSKVSGNIQFASAPVPTPTPIPTPTPTPTPVPTPTPTPVPVPIPTPTPTPTPVPTPTPTPTPVPVPIPTPTPTPSPIDLTDIANHWAAAFIRELVKQGIVNGFPDRTFKPDATMTRAQYAALIVKAFTPSSKRAAAQFKDVSASFWAAKVIQQAYQGQFLSGFPDNTFRPNQNIQRVQVLVSLVNGLELGTSGNVANANKIFDDQAKIPDYAKDEVAKAIDKGIIVNHPNLKQLNPTRDATRAEVAVMVYQALVDAGRVAAINSQYIVNG
>NC_019676.1|WP_015114040.1|3754187_3754430_-|hypothetical-protein
MTEQKPLNPWEYKPWWCQPWSIILTSVVLISGSCLLFKIVWLTILVSIPVIIWMGFFVFIWPQLMIRSGILESYQRENLE
>NC_019676.1|WP_015114039.1|3752305_3754147_+|penicillin-binding-protein-2
MALFPSSLPNSRKDTRTVGRGIQSIFLIGFTLLTLAGIEARLAYLQIVEGSQLRKRAESNRVRTILKQPERGNIFDRNGKLLATTRYPHSVYLWPLAHTKPSWSVVGPRLSQILGIPQEEMEHKLDAAGANSASLIRIARDVSEAQITALKEYENELKDVEINTDAVRYYPHGQELAHVLGYTRELTPDQLKDKQKEGYRLGDVIGQMGIEKAYEKTLRGEWGGQQVEVDGAGRPIRILGEKQAKSGKDLHLTIDWELQKAADKALGKYQGAIVALDPRNGAVLAMVSHPGFDPNIFSKQKLSQKDWESVQGKDHPLVNRALSAFPPASTFKIVTTTAGLESGKFSPGTVLQTYGSLTVGGVTFGEWNHAGFGPLGFPRAIAMSSDTFFYQVGKGVGGPTLIEWSRKYGFGQRTGIEFSSEETKGLVPDENWKQKAWKIPWTVGDTINMSIGQGALQVSPLQSAIMFSVPANGGYRVKPHLLKDNEEAKSWRESLNLKQSTINVLRDGLRKVITEGTGKRLNLPTIAPSSGKSGTAEAGVGRPNHTWFGAYAPSDRPEITVVAFGENSGDHGGTVCGPMVLQVLEAYFQHKYPGKYQKPESANSQNANDVNGD
>NC_019676.1|WP_015114038.1|3750965_3752093_-|ABC-transporter-ATP-binding-protein
MAQSVVQNQKGITSFQPLDVELRNVFKFFKQEPAVHGIDLDIRKGEFFSILGPSGCGKTTTLRLIAGFESADAGKVLIQGQSMTNVPPYRRPVNTVFQSYALFNHLNVWDNIAFGLHLKKIRKSEIESRVTEALKLVKMESLRSRFPNQLSGGQQQRVALARALVNHPTVLLLDEPLGALDFKLRKEMQVELSNLHKKLGLTFILVTHDQEEALSLSDRIAVMNQGKIEQIGTPSEIYERPQTAFVADFIGDTNLFSGEIAAVEADCIQVVTKTGLKIIVTRYEDTPIELSQSVVVSVRPEKIQLSLYPPNLPSNSFEGRLVNVMYLGTHVTYVVELTNGINISVLQPNTFGNLPDRDTPIYVLWAESDCLAISQ
>NC_019676.1|WP_015114037.1|3749870_3750953_-|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MTNRRNFLQKIAAFSSLSLTGCGWKLANVRAATKSTHSDKLYLYTWTQYADQKLLQTFSSQTGLQVLVDPYDSNEVMLAKLLAGGGGAYSVIYPSDYMVQKMVEKNLLIELNHNRLIGLDNLFPQFKNPSYDQNNRYSLPFNWGTTGLIYNSEVLQTAPEDWDYLWQNQSILNKRMTLLNDVREVMGAVLRMLGYSYNSKEEEELKQAYNKLQQLKPAIASFDTDAWQNQILSGDLVLAMCYSADAIRVIKENPKFKYVIPRSGSSLWTDTIVVPKSAPNIDGAYAWINFILQPEVAAIISQNLNISTPNGAGFEQLPKKLQDNKNLFPEAALLEKCERITPLGDFEEVYERYWTQLTSS
>NC_019676.1|WP_015114036.1|3748903_3749806_-|ABC-transporter-permease
MSSLINHTDEISNVEKLHRPTFNFLQPLVLLAPAGIWLLLLLVLPALIIFQLSLVPNIRPGDLVNPSSLENYIRIFDPLYLHVILRSLWLALGATIICLIFGFPVAYWLAQIAPKKWRNLLLLAFVLPLWTSSLLRSYAWITILRRTGLLNTILSNLGLPTLDLLNRIPAVFIGMSYSLLPYMVLILYASLEKLDQRLLEAAADLGANPVQTFWKVTVPQVSPGITAGSILVFITGLGDFIDPELLGGSSSMTAARLVYNQFLGVTQNWGFGSALSMTLIFAVSIAIALLIKFGEPTPSR
>NC_019676.1|WP_157374052.1|3761812_3761971_+|hypothetical-protein
MTSLGDRILQVENLDFLLVRAGGLPSGFPLARLRFYRREFYASGLDVSIPIE
>NC_019676.1|WP_015114046.1|3762073_3762664_+|chromophore-lyase-CpcT/CpeT
MTSSTDITTLAQWMAADFSNQAQAFENPPFYAHIRVCMRPLPLDLLSGVSFFVEQAYDYTLNDPYRLRVLKLVNVGDRIQIENYTVKQEEKFYGASRDLERLKTVTADDLEKLPGCNMIVEWTGNSFKGTVEPGKGCIVFRKGHRTYLDSEFEIDGEKFISLDRGRDPETDEHIWGSVAGPFYFVRWASFADEVKL
>NC_019676.1|WP_015114047.1|3762727_3763525_-|3',5'-cyclic-AMP-phosphodiesterase
MNQVSTVSIAQITDIHLFASESHQLLGMPTIESFKVVLERLKELKSEIDLLLLTGDLSGDGTSDSYEHLQSLINQLQIPTYWLPGNHDCAIAMNEILNVGMISRRKSFQRGDWNFLLLNSAVPGCVHGHLTTNTLSWLDSELAKLGNKPTLIAFHHPPFLVNSAWLDNSGLKNPEELFAVIDRYPQVKLVLFGHIHQQFQGQRYNVGYLGTPSTCIQFRSHSHTFAIDQKAPGFRLLKLYPSGSWETSIERVPYFHPLELAATGY
>NC_019676.1|WP_015114048.1|3764008_3764458_+|tyrosine-protein-phosphatase
MSNSKKVSENLSTAGQVTNEELQQLAQAGFKSVLNLRSPDEAGFLNDEQQQAQEAGLEYANVPLKPSQADKELTELAIEKIDNLPKPILIHCAAGARAGGIALIATAVNEGLTYEQITQKASELGINLEQPHLKQFLLDKYIADQAEKA
>NC_019676.1|WP_015114049.1|3764593_3764878_+|DUF5132-domain-containing-protein
MSVKFLPDLGDLAEGLGITGIVGVVLVPVLLPVVAGVGRPVAKAVVKKGILFYEKSKEAIAEVSETWEDIIAEAKAEIGEERMKSAEPRETPLR
>NC_019676.1|WP_015114050.1|3764894_3765581_-|response-regulator-transcription-factor
MTVAHSPCVLVIETDEILANQLSSDLQEAGYDAILAHDAASGLQYSRDCQPALIVLDRMLAGESGLSLCKNIRSSGMRSPVLVLMARDTVDDRVACLEAGADDYILKPYRPEEFLKLIRLYLKPDIDTTEQLRFGDLVLDISTRRAIHNGRVIDLTMKEFELLKFLMEHPREVLTREQILENVWGYDFMGESNVIEVYIRYLRLKIEDEGQKRLIQTVRGVGYVLRES
>NC_019676.1|WP_015114051.1|3765765_3766683_-|NAD(+)-kinase
MPKAGIIYNDLKPIASRVAIELEEKLTAAGWDVCVTSSIGGILGYANPESPICHTPIDGLTPPGFDSDMKFAVVLGGDGTVLAASRQVAPLGIPLLTVNTGHMGFLTEAYLNQLPQALEQAMAGEYEIEERAMLTVKVLRGESVLWEALCLNEMVLHREPLTCMCHFEIAIGRHAPVDIAADGIIVSTPTGSTAYSLSAGGPVVTPGIPALQLVPICPHSLASRALVFPDTETVSIYPVNIPRLVMVVDGNGGCYVFSEDRVYLERSQYSVRFIRLQPPEFFRILREKLGWGLPHIAKPTSVELP
>NC_019676.1|WP_015114052.1|3766824_3767814_-|SDR-family-oxidoreductase
MTLLIVGATGTLGRQVARRAIDEGYKVRCLVRSSKKAAFLKEWGAELVLGDLCYPETLPGALEGVTTIIDAATSRATDSLTIKQVDWEGQIALIQAAKTAGVERFIFFSIIDADKYPEVPLMEIKRCTELFLAESGLNYTILRLAGFMQGLIGQYGIPILEGQPVWVTGESSPIAYMDTQDIAKFAVRALNVPETQKQAFPIVGTRGWSAEEIISLCERLSGKDAKVTRMPLNLLRAVRGFVRFFQWGWNVADRLAFTEVLASGKPLNAPMDEVYKVFGLDQKETATLESYLQEYFSRIMKKLKELNYEKTKTKKEKNKRSPFKKLNSQ
>NC_019676.1|WP_015114053.1|3767978_3768083_-|cytochrome-b6-f-complex-subunit-PetM
MGGEIFNAAFLAFGLIFVGWALGALLLKIQGAEE
>NC_019676.1|WP_015114054.1|3768298_3769384_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MYHSEQNLIVKPHKESRPRLALTLGDPAGIGTEVILKALAEPEVSQNCDVTVVGNWNWLVQTYDELNLSGNLVALANPNSLKVVDVQSNQNLDEIVTGVGNAVSGAASFAYMEYAIAQTLAGEFDGIVTAPIAKSAWKAAGYNYPGQTELLAEKSNVERYGMLFVARSPYTGWILRTLLATTHIPLRQVADALTPQLLTKKLDLLVECLQQDFGISKPRIAIAGLNPHSGEQGQLGTEELDWLIPWINQEQQKRPRLHLEGPIPPDTMWVKPGQAWYGNSATHNPADAYLALYHDQGLIPVKLMAFDRAVNTSIGFPFVRTSPDHGTAFDIAGKGIADSTSMKAALQLAAELATARKQDDL

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Crispr_ID: NC_019676_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_16

3791035-3791125

Orphan

Consensus_repeat	Method
TTCAGCAATTCCCATCACCAGAACAAGTTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_16

>merge|NC_019676|16|3791035-3791125|CRISPRCasFinder
TTCAGCAATTCCCATCACCAGAACAAGTTGTCACTGAAAAAATTATCCAGCCAACATCTGTTCAGCAATTCCCATCACCAGAACAAGTTGT

>NC_019676|16|15|3791035-3791125|CRISPRCasFinder
TTCAGCAATTCCCATCACCAGAACAAGTTGT	CACTGAAAAAATTATCCAGCCAACATCTG
TTCAGCAATTCCCATCACCAGAACAAGTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114062.1\|3780382_3781147_+\|DUF429-domain-containing-protein	unknown	unknown	gnl\|CDD\|226778
NC_019676.1\|WP_015114077.1\|3802242_3802827_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_019676.1\|WP_015114070.1\|3793439_3795101_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114060.1\|3778963_3779587_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|379137
NC_019676.1\|WP_015114072.1\|3796321_3797494_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340848
NC_019676.1\|WP_015114078.1\|3802835_3804314_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366375
NC_019676.1\|WP_015114075.1\|3799493_3801206_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NC_019676.1\|WP_015114067.1\|3787007_3789536_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|376320
NC_019676.1\|WP_015114061.1\|3779844_3780120_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114076.1\|3801498_3802137_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NC_019676.1\|WP_015114059.1\|3773164_3778279_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NC_019676.1\|WP_011318184.1\|3804411_3804657_+\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_019676.1\|WP_044500063.1\|3798722_3799448_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114073.1\|3797574_3798714_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379243
NC_019676.1\|WP_015114064.1\|3784036_3784348_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114066.1\|3785870_3786578_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_019676.1\|WP_015114063.1\|3781194_3783759_-\|alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|273968
NC_019676.1\|WP_015114058.1\|3772623_3773109_+\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NC_019676.1\|WP_015114068.1\|3789966_3790083_+\|photosystem-II-reaction-center-protein-I	unknown	unknown	gnl\|CDD\|179459
NC_019676.1\|WP_015114071.1\|3795188_3796211_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114062.1\|3780382_3781147_+\|DUF429-domain-containing-protein	gnl\|CDD\|226778	COG4328, COG4328, Predicted nuclease (RNAse H fold) [General function prediction only].	2.95282e-122
NC_019676.1\|WP_015114077.1\|3802242_3802827_+\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	4.68054e-47
NC_019676.1\|WP_015114078.1\|3802835_3804314_-\|NACHT-domain-containing-protein	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	5.43531e-05
NC_019676.1\|WP_015114060.1\|3778963_3779587_+\|radical-SAM-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	4.78944e-52
NC_019676.1\|WP_015114072.1\|3796321_3797494_+\|glycosyltransferase	gnl\|CDD\|340848	cd03821, GT4_Bme6-like, Brucella melitensis Bme6 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.	7.96714e-149
NC_019676.1\|WP_015114075.1\|3799493_3801206_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.41602e-22
NC_019676.1\|WP_015114067.1\|3787007_3789536_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|376320	pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin.	0
NC_019676.1\|WP_015114058.1\|3772623_3773109_+\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	0.000719664
NC_019676.1\|WP_015114076.1\|3801498_3802137_+\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	5.70505e-132
NC_019676.1\|WP_015114059.1\|3773164_3778279_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.04508e-81
NC_019676.1\|WP_011318184.1\|3804411_3804657_+\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.08335e-24
NC_019676.1\|WP_015114073.1\|3797574_3798714_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|379243	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.08014e-23
NC_019676.1\|WP_015114066.1\|3785870_3786578_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	3.15287e-43
NC_019676.1\|WP_015114063.1\|3781194_3783759_-\|alpha-glucan-family-phosphorylase	gnl\|CDD\|273968	TIGR02094, Glycogen_phosphorylase, alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/pfam00343.	0
NC_019676.1\|WP_015114068.1\|3789966_3790083_+\|photosystem-II-reaction-center-protein-I	gnl\|CDD\|179459	PRK02655, psbI, photosystem II reaction center protein I.	4.68182e-17
NC_019676.1\|WP_015114071.1\|3795188_3796211_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	6.98201e-25

>NC_019676.1|WP_015114068.1|3789966_3790083_+|photosystem-II-reaction-center-protein-I
MLTLKIAVYIVVAFFVTIFVFGFLSNDPARNPGRRDLE
>NC_019676.1|WP_015114067.1|3787007_3789536_+|glycogen/starch/alpha-glucan-phosphorylase
MTTFEQAPIFQCEFEDDRTGLSKETIKRALADNLFYIQGKVPATATPNDYYMALAYTVRDRMLQRWFKTTEVYTKKGVKVVSYLSAEFLLGPHLSNNLINLGIYDLVRQIVEESGLDFVQLRETEEEPGLGNGGLGRLAACYMDSLSTLEIPAIGYGIRYEFGIFDQEIRDGWQVEITDKWLHLGNPWEIPRLEETIEVKFGGRTEAYYDEKCRYRVRWIPDKVVKGVPYDTPISGYNVNTVNTLRLWKAEAPESFEFQAFNVGDYYGAVNRKVVSENITKVLYPNDELIKGKELRLEQQYFFVSCSLQDMIRLHLQKGESLDTFHQSFAVQLNDTHPSIGVAELMRLLVDEYEIEWDQAWQITQNTFGYTNHTLLPEALEKWSLSLFKNLLPRHLQIIYEINQRFLGQVRAKYPNDSDRLARLSLIDESGEKYVRMANLASVGSHAINGVAALHTDLLKRDVLGDFHELWPEKFSNKTNGVTPRRWIVVSNPQLANLITRKIGTNWISHLEDLKQLEAFIEDAEFCREWRQTKQDIKSYLAGYIRENHGIEVNPESLFDVQVKRLHEYKRQHLNVLHIITLYKRIKDNPNIEITPRTFIFGGKAAPGYFIAKLIIKLINSVGDVVNNDPDVRDRLKVVFLPDYNVRFGQRVYPAADLSEQISTAGKEASGTGNMKFAMNGALTIGTLDGANIEIREEVGAENFFLFGLTTEEVYDLKSKGYNPWDYYHSNPQLKQVIDLISSGFFSHGDTNLFRPLVDSLLYHDPYMLFADYQSYIDAQDQVNQAYRDQEHWTRMSILNAARMGKFSSDRAILEYCQEIWNAVPVKIELEEYIQGRAGLKV
>NC_019676.1|WP_015114066.1|3785870_3786578_+|acyltransferase
MSNQKHFSKSQRLKELLLITLLGDIPTLALGTKLRSWLYRSIFAQLDSSVYIQNGVEFLGTDRISIGKKAHIFKGVRIDAQGHSNNHIYLSHGVAIERNVDIGCLDNTSIYIDEETFIGPDVCIAGPGDIIIGKRCLIAAHSGIYANNHNFSNPLEPIKSQGITRQGIVIENDCWLGHGVTVLDGVTIGEGSVIGAGAVVTKDIPPFSVAIGVPARVIKNRMSQSLERGVGISST
>NC_019676.1|WP_015114064.1|3784036_3784348_-|hypothetical-protein
MVEIKQIVQQAFRTGYLSIAEQNQIQVLLRQDYDSEDLDAFIILQRAIASGEVQKELKHRQANHSNHKSNIKLAYRIAAELAYAAAQTLKMPKNTQDQPSLGS
>NC_019676.1|WP_015114063.1|3781194_3783759_-|alpha-glucan-family-phosphorylase
MQPIRTFNVSPSLPPRLEPLRRLAYNLHWDWNVETKDLFRRLDTDLWESSRHNPVLMLGTISQARLLEVVEDDGFLAQMDRAARQLEDYLQEGTWYQKQRSQKPKECYAYFSAEFGLVDCLPVYSGGLGVLAGDHLKSASDLGLPLVGVGLLYQQGYFAQYLNADGWQQERYPINDFYNMPLHLERNPDGSELQIAVDYPGRKVYARVWRVQVGMVPLYMLDTNIEPNNQYDHDITDQLYGGDIDMRIHQEIMLGIGGVQMLKALGYDVTAYHMNEGHAAFSALERIRLLIQEEGLSYAQAKQVVMSSNIFTTHTPVPAGIDLFPPDKILYYLGYYADIFGLPKEQFLGLGRENTGDLSAPFSMAVLALKMATFSNGVAQLHGVVSRQMFQGLWKKVPVEEVPITAITNGVHARSCVAKSTQELYDRYLGPNWSSVPPENQLWERMEAIPDEELWRNHERCRLDMVLYVREHLVKHLRDRGASASEIAQAQEVLDPYVLTIGFARRFATYKRATLWMRDLERIKHILLGDKTRKVQFVIAGKAHPKDIPGKELIRDINHFIHEHHLEKQVVFVPNYDIHIARLMVAGCDIWLNTPRRPREASGTSGMKAAMNGLPNLSVLDGWWDEADFVRTGWAIGHGENYEDPNYQDEVEANALYDLLEKEVVPLFYDHRDDDGLPRPWVAKMKDAIRLNCPFFNTARMVRDYAQQAYFPASDRCHTLIADNYAPAKELAAWKAKLSDHWFNLIIKDIDVSVGSDIKVNQSVAVKAKVDLATLSNDDIQVELYQGVIDANGEIVNATPVVMDYQGQDSQGLSVYTADIIYNTSGLQGLSLRVLPKHPHLSNAYEPRLIAWAE
>NC_019676.1|WP_015114062.1|3780382_3781147_+|DUF429-domain-containing-protein
MKFIGIDLGWKSQPSGLCCLQLIDGKLQLIDLDRQDAIADILNWLDTWVKLEESAIIAVDAPTLIPNATGSRLPDKLSHKYFGKYHAGCYPANQNLPFAERTINFGLELESRGFVHAPTIEAKKFGRYQIEVFPHPAIVHLFNLERILKYKKGRINERRQELIKLYQYILEVLPNLEPKLELNQKLNAKQSHPFPFDFFLLPSTGAALKAIEDKLDSLICAYVAAHWWYWGEQRNLVLGDRTTGYIVIPNKSEK
>NC_019676.1|WP_015114061.1|3779844_3780120_+|hypothetical-protein
MLLQTTVSDLLVDLSTEKQQFLAGGCGSYGRSQEPSQGSSPAETSPEMSSPVVVSQPIARLAVGSIITVTPFAKCLPGQSCYGTEDSQTQD
>NC_019676.1|WP_015114060.1|3778963_3779587_+|radical-SAM-protein
METQPTRPSPTLPEIPLGYLNIMGYVDESEVNGPGCRAVVWVQGCRRECPGCFNLESWPFEINQLISVDTLAEQILSKPQNTGVTFSGGEPFWQASALAALARKLKAAGLNVMSFSGFTLKQLQSESAPSGSQELLEQLDILIDGPFVESLAINSPNSPVSSSNQRVNVFNPALADQITWASDQIEIHILKDGSRIVTGYRGRLELT
>NC_019676.1|WP_015114059.1|3773164_3778279_-|PAS-domain-S-box-protein
MYDQSIKIVLIDDQPEDLNFLTQLLECQNYQVQKFTAGKLAIDAVRETLPDLILLDVLMPEMDGYTVCQHFKAHKQTQNIPIIFLSPIETLQDKEKFFQLQAIDYITKPLCAPEILIRVQNCIHLQHQRKLALTQKEGESTEQTLKLPNIKLHNHNLVLTELAKNQILYQGDIKAAFGEITEAATKNLEIERASIWLYNQASTSIYCLDLFEQSRHQHSEGYTLAIVDYPIYFQALQQEEVIAVENVYTDHRTKEFSQSYSDLNIISILDTPIRLAGKTVGVLCLEVLEVLREWTLEDQNFARSLTNLASLVLEARERQRAETARRASEAKLASAFKASPDPIILCILPEIRYIEVNDSFCRLFGYARHQVIGRTDQELQIWANCQESIFLTQILQQTKSLRNYEVDFCIASGEIKTMLFSAEIIEIDGQKYVLGTAKDITERKQAENESRLLLLTSQAITRAVDVNSALKVVLRLICHSINWDFGEAWLPSDDDTVLEHNLVWHGEDVSLKQFSLVSQNIKFVLGEGLPGRIWETKQPEWIEDVSAAEQPVFLRSPQAAKVGLKAAFGVPILADGEVLAVLVFFKRSAALIDKRLLMLVGAVATQLGSLIQRKMIEAAHRQSEERLQLALEASDLGLWDWNLSTGEIYSDLQWAKMMGYEENCVTNVSQVFEQFIHPEDLAIVTTALKAHFQGVSAVYEVECRMRCANGEWKWIQSRGKIVECDDWGQPLRMTGTHKDITERKTLERELALREAQLNAFFSSAPVGMNILDKQLQYVQINQVLADINGLSQAEHIGRKIYEVIPQIAPLVAPFYEHVLLTGERILNLEICTPKPKQPETLGYFLVSYFPIPGEDNYISGVGTVVVDISDRKHAELALQASRLRYQTLSEASPVGIYHTDELGNCIYLNQRWCDITGLNQSEAMGAGWAKALHPDDRDRVFTTWYAAIAAKSLYKCEHRFMRPDGTSVWVICQAIPEIDENGEITGHIGTITDITESKLAEAALRESAEREKAIAQVIQRMRQTLDLNTIFAATTEELRQILNCDRVVVYRFNADWSGEFVSESMNEGWISLMLEQRSDPIVTNNALEDGRCLERILESAAYPIQDTYLQATQGGVYKQEASFRCVADIYQAEFDSCYIDLLERFQAKAYIIVPIFCGSQLWGLLASYQNSSPRQWKTGEINIVVQIGNHLGVALQQAELLVQTQRQSQALQTAVITADAANKAKSEFLANMSHELRTPLNAILGFTQIMSYDHELSKGHQQNLAIINRAGEHLLNLINDILEMSKIEAGKTTLNISNFDLIALLNNLEEMLRVRAESKGLQLRFEYAPQLPQYVQTDDNKLRQILLNLLGNAIKFTSTGCVTLRVKLADQIIQRHTDTAIIPHSLIFEVQDTGVGISPQEIGLLFKAFGQTEIGRKSQQGTGLGLAISRKYVQLMGGDITVRSQEGIGSIFTFQIDIGFASISQEPVRQIQRRVLGLAPEQTEYRILVVDDVLENRLVLVKLLQMKGFTVREAANGEEAITLWQVWQPHLIFMDMRMPVIDGYAATKLIKARNEAAVFPNAHPIIIALTAHAFEEQRQAIISAGCDDLINKPFREEQIFAKIRQYLDVKYIYQEENQQIIDATQPNFQIHIIQEDLLSWLAQMPDKWLANLHNAAAQCSDDLVLELMTDIPIKNIIFQQYLTDLAQNFQFEKIMNLTKKYDVH
>NC_019676.1|WP_015114058.1|3772623_3773109_+|YcxB-family-protein
MHIKTKTFQITPKELRNLLTVDYYRRMKITFMLLGFLLLVNIIFSVLQNRFDWWLIYFVGLMAYFVSMPLLFQVQKRSSTLNFQNRYCEIDENFFAVFYEDGSIVKLNYSHFVQVTKKADYYFLYMTKVQFHYLPVAAFESEKDIHRFDLFLQSKQLIKLW
>NC_019676.1|WP_015114070.1|3793439_3795101_+|hypothetical-protein
MAKVKSKSQKSKNSKKQPAKKEAPTLSLQERLAQKRQTTKARKEFMDLLSKSLSGGLFLGFLLFLFAGIKAALPAVLGILVMSFSYKYPRQALIGFMIYVPFGGTITYYIGNSPILQLAKDSFYIPVAIALWQICRKQKLPFVVPQQIKIPLYFVLASSLLTLVFINGGQQLNPPPVGLLQTPVKEIPIGLGILGLKVFLGYVPLITCAYYLIRDKKDFLLLTRLQIVLILICCGLGFLQYLLLVVGVCEGTRNLEGAALFKATLEARCYFGGALVYSPSQGIIRLPGTFVAPWQWAWFLISSTFFAFATGFSDPSVLWRLTSLGSLALIFVNAVVSGQRIALALVPTCFVMLLLLTGQIANLKRFIPIGVGLVMILGIAVVTNPVVVQERLDSFLVRWNASPPQDFIIQQFEENWKNVDTPIGSGLGRATNSARALGETKLVETYYPKVLYEVGIFGVLGFFALVNVLTFTAFKTYRSIKNRNFRSYGASMWVFILFISYNTYYYPLDVDPVAVYYWFFAGVLFKLPALDKQEKEDADPEKVTKKKRSQIKF
>NC_019676.1|WP_015114071.1|3795188_3796211_+|glycosyltransferase-family-2-protein
MNDLPLISVIIPTYGREEALKDSIVDVLIQDYPHFEVLVVDQSPKHQLEVQTYLEEVAALGKIQWFRLSWASLPGARNYGVRRSSGEIILFIDDDVRLTPGFLMAHAKNYLQNPEIGAVAGRVFDRMKLGESGGNLQIEYLPPEAMNPGIAWYYLDLVHTVKPQQVLTARGCNMSFRREIFSKYGLRFDERFRGSAVREESDFCLRIRKTGYKIWYDPESHLIHLGEETGGCHDISTRSLKYQFTFYHNNFLMALKNLNFSEFLQLSASLFDCQVLGHPPCNKSGSFVAVLSRAMFYILGFINALSSVVQSLWDDGQIYTKLDQQSQILVVDKQTSMSAN
>NC_019676.1|WP_015114072.1|3796321_3797494_+|glycosyltransferase
MRILQIVPSISLIYGGPSQMVLGLAPALANEGVKVTILTTDSNGDNGQQPLDVPLNRPIKQDGYEIIYFRCAPFRRYKFSLDLLNWLKNHANEFDLAHIHALFSPISSAAATVCRQQKLPYILRPLGTLDPADLQKKKQLKKLYIELIERQNLASAAAIHFTSEQEAKISERFGVNTKDLVIPLGVKPTQRISSSAVSSQLGIPEDLPLVLFMSRIDPKKGLNLLIPALEKLLTNDCKFHFILAGTNPQDPDYEQKIQTQIENSPLRSHTTITGFVSGELKAGLLQAADLFVLPSYYENFGIAVAEAMVAGIPVVISDQVHIWQQVSDSQSGWVGRTDVSSLFELLQQALQNPEERQRRGQNAQNYALEHFSWDAIARQMIQAYEQILNK
>NC_019676.1|WP_015114073.1|3797574_3798714_-|substrate-binding-domain-containing-protein
MPRELKNTPKVKAQSKSSKIVTSVAMIIAALGLTYIPLPGSQKTVIVVSGTELQEPLQELEAKFEQANPNIRLELKFQGSQELVNNYLDQKNDFKPTILIPANGEILTELSDRLRTTNPTEPFYDSPRPLAKTLLVGIAWPERGKVLFPNGRFQWSKLEQAMQAGNWGKVGGSSNWGSFDFVTTDPTRSNSGQLTLNLWTQSKLGGAINADSFNNSSIQTLFSLIKKSVYQPPRSTDILLQEFIVRGANDADVATVYESVALYRWQQSAASKGKPYQVYYLDPSIETTATAAIVRRDVDAGTAKAAKQFLDFLTQPEQQAVFIQYGFRPVNNNVDLKTVPNSPWSQNIPGAEVNPSVKILPPPDIQIITEIQRQWERAN
>NC_019676.1|WP_044500063.1|3798722_3799448_-|hypothetical-protein
MMKLVNPLYYPLAVLAGGIFLFLGVRLLQLPSLVMLPVASGITVISAGWLKSREPTFFDLANPELEREINAVKLATLGLVNQSESLRLESKKILTDTFQIELLAAVEINCDRTATFPPKIDTLVGSLYSNTPILSVSSLQQQLIEVQQKLNASSGIAKEHLNQLVESLKRNLKLAQDGEDTRLVRMINISTLIQDCTGILQKLQTKLRTSDLTDSQQIHEMQSLSDELTSLLENIDLLVRK
>NC_019676.1|WP_015114075.1|3799493_3801206_-|VWA-domain-containing-protein
MIFQRSRFLTQLVIISAVVFMTGCNTNSTSDDNFTGLKVKLLVGSALGDFCNQAAKNFNATQPKLDSGAAFQVKCEALGSGDVVTEVVALADQLQKGTVKADAADFPTIISLDGDIYQSQLIYRMNQISPGKNYIPDITESPLIANTPMVFMAQADVAAGLRKVADPYKVLVTAKTHRDIDPASPPLTVHYVHSAPTRSNSGLQTLVAQYVSVSGKRPEDITSADVQKFQPQIQQIQSKITRYGISTNSLAQAMVKNGPFWASVGSMYESSVIVANSGLPQGKQRYQAVYPKATFTSNMRAIVPNAPWVSADEKAAAEKFITYWRSPETQKLAPDLGLRPGTPGVALGAKFTPEFGVEPQAKYDSLRPPKPEVVDAMLKSWQESVKKPSLVVVVVDSSGSMSGDKLPAVQNTLQNYIKNLGPKEQIALIDFDSVIRQPVLVDGTPQGRDRGWQFINGLRADGGTNLYDAALEARNWLQKNLRKDAINAVLILTDGEDAGSKIKLDELEQELKKSGFATDQRIGFFTIGYGKEGEFKPDVLKEIAELNGGYYSQGNPETILQLMSNLQVEF
>NC_019676.1|WP_015114076.1|3801498_3802137_+|peroxiredoxin
MTLHLGDTVPNFTQASTHGDINFYEWAGDSWVVLFSHPADFTPVCTTELGTVAKLKPEFDKRNVKAIALSVDDVESHNGWVGDIEETQSTTLNYPILADADRKVSDLYDMIHPNANAAVTVRSVFIIDPNKKLRLSFTYPPSTGRNFDEILRVIDSLQLTDNYSVATPADWKDGDKVVIVPSLKDPEVLKEKFPKGYEVVKPYLRLTPQPNK
>NC_019676.1|WP_015114077.1|3802242_3802827_+|Uma2-family-endonuclease
MLSSPLLIQIPPSMQMTDEQFFDFCQVNRDLRIECNQFGEISIMPPTGSETGNRNFNVALQLGVWSEKDGTGICFDSSTGFTLSTGAKRSPDASWMKLERWNTLSSEQQQVFAPICPDFVIELRSLSDNLQPLKDKMAEYMQEPGVQLGWLIDRKHHRVYIYRPSQSEECLENPDTVSGEPVLPGFVLNMSKIW
>NC_019676.1|WP_015114078.1|3802835_3804314_-|NACHT-domain-containing-protein
MSNSLKASTTGLTIVDKARKRLGWTKTSTARWWQDAHTSRATLRRFWQGDRIQQEIFIAICQAVGINDWQSIAEIPNADFEETSTQYLDWDEAPDVESFYGRNQELTQLEKWIVGDRCKLIIITGIAGIGKTALALALADRLQLKFDGLIWKTRHSTPSLVSLLDGLLNIFEEAAVDDIPQNTAKLLHHLQQRRCLLILDGLDESEKHYHQFIQQLSRAHHQSCIILTSREQPNIIESNTKTVRSLTLTGLPKAGAVELLQARGFTGKELGLSPLIQLYRGNPLALKLVTPLIQSVFGGNIAAFLSQNTIVIGDRLRAILKKQFEQLSDLEQHILYWLAIWQQPISFSRLQTHLLISLDPATILDAIVSLEKRSLLEKWICSGEPAFTLQPLVMKIVTDELVERTTQEIIQVVQSGDICNFKILRTHWLLRPGSDDIVGDRILHQLQEKLLQIYGANLVQNLQQILLLLNDKSPLAIGYIACNLTTIINRLG
>NC_019676.1|WP_011318184.1|3804411_3804657_+|UPF0175-family-protein
MSIVIPDEILAATRMTDAELKQEIAVMLFQKDKLTLAQASRLAGMNRIAFQHLLASRQIPVHYGVDDFEQDIKNLQDMGRL

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Crispr_ID: NC_019676_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_17

3817115-3817204

Orphan

Consensus_repeat	Method
TGGCTGTAGGAGTAGGAGTTGCTTGAGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_17

>merge|NC_019676|17|3817115-3817204|CRISPRCasFinder
TGGCTGTAGGAGTAGGAGTTGCTTGAGGTTTTGTCGTGGGTGAAGGTAAGGAAGTATTTATGGCTGTAGGAGTGGGAGTTGCTTGAGGTT

>NC_019676|17|16|3817115-3817204|CRISPRCasFinder
TGGCTGTAGGAGTAGGAGTTGCTTGAGGTT	TTGTCGTGGGTGAAGGTAAGGAAGTATTTA
TGGCTGTAGGAGTGGGAGTTGCTTGAGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114087.1\|3815094_3815949_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NC_019676.1\|WP_015114097.1\|3827004_3827208_-\|putative-nitrogen-fixation-protein-NifT	unknown	unknown	gnl\|CDD\|377752
NC_019676.1\|WP_015114081.1\|3806534_3809000_+\|after-VIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|274782
NC_019676.1\|WP_083889799.1\|3821296_3822790_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019676.1\|WP_015114078.1\|3802835_3804314_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366375
NC_019676.1\|WP_044500071.1\|3805202_3806441_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_157374055.1\|3825581_3825755_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114084.1\|3813593_3813926_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NC_019676.1\|WP_015114091.1\|3819396_3820398_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_019676.1\|WP_015114096.1\|3826616_3826967_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_019676.1\|WP_015114098.1\|3827182_3827470_-\|nitrogen-fixation-protein-NifZ	unknown	unknown	gnl\|CDD\|377301
NC_019676.1\|WP_015114094.1\|3824810_3825290_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_019676.1\|WP_015114085.1\|3813980_3814778_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375088
NC_019676.1\|WP_015114082.1\|3809048_3811259_-\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|206739
NC_019676.1\|WP_015114093.1\|3823185_3824598_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114095.1\|3825970_3826510_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NC_019676.1\|WP_011318184.1\|3804411_3804657_+\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_019676.1\|WP_015114090.1\|3818586_3819396_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132557
NC_019676.1\|WP_015114088.1\|3816105_3816720_-\|DUF4340-domain-containing-protein	unknown	unknown	gnl\|CDD\|379518
NC_019676.1\|WP_015114079.1\|3804653_3805142_+\|DUF3368-domain-containing-protein	unknown	unknown	gnl\|CDD\|225269

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114087.1\|3815094_3815949_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	0
NC_019676.1\|WP_015114097.1\|3827004_3827208_-\|putative-nitrogen-fixation-protein-NifT	gnl\|CDD\|377752	pfam06988, NifT, NifT/FixU protein. This family consists of several NifT/FixU bacterial proteins. NifT/FixU is a very small, conserved protein that is found in nif clusters; however, its function is unknown. Although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation.	3.61633e-30
NC_019676.1\|WP_015114081.1\|3806534_3809000_+\|after-VIT-domain-containing-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	3.51749e-138
NC_019676.1\|WP_083889799.1\|3821296_3822790_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	7.6227e-17
NC_019676.1\|WP_015114078.1\|3802835_3804314_-\|NACHT-domain-containing-protein	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	5.43531e-05
NC_019676.1\|WP_015114084.1\|3813593_3813926_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.957e-18
NC_019676.1\|WP_015114082.1\|3809048_3811259_-\|dynamin-family-protein	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	5.52403e-40
NC_019676.1\|WP_015114096.1\|3826616_3826967_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	9.50846e-44
NC_019676.1\|WP_015114094.1\|3824810_3825290_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.03405e-19
NC_019676.1\|WP_015114085.1\|3813980_3814778_+\|hypothetical-protein	gnl\|CDD\|375088	pfam17265, DUF5331, Family of unknown function (DUF5331). This bacterial family of unknown function can be found in Cyanobacteria.	8.42646e-22
NC_019676.1\|WP_015114091.1\|3819396_3820398_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.45816e-100
NC_019676.1\|WP_015114098.1\|3827182_3827470_-\|nitrogen-fixation-protein-NifZ	gnl\|CDD\|377301	pfam04319, NifZ, NifZ domain. This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins.	5.94561e-41
NC_019676.1\|WP_015114095.1\|3825970_3826510_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.23711e-15
NC_019676.1\|WP_011318184.1\|3804411_3804657_+\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.08335e-24
NC_019676.1\|WP_015114090.1\|3818586_3819396_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132557	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	1.40946e-25
NC_019676.1\|WP_015114088.1\|3816105_3816720_-\|DUF4340-domain-containing-protein	gnl\|CDD\|379518	pfam14238, DUF4340, Domain of unknown function (DUF4340). This domain is found in bacteria, and is typically between 183 and 196 amino acids in length.	5.85779e-08
NC_019676.1\|WP_015114079.1\|3804653_3805142_+\|DUF3368-domain-containing-protein	gnl\|CDD\|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.254e-49

>NC_019676.1|WP_015114088.1|3816105_3816720_-|DUF4340-domain-containing-protein
MTIPKTTLILVLLALGLGGLVYFHEMRGETQQEEVKAKQQQIFAFAEDDVQSLTVKTKAYTLMLERNSQGSNPKWLLKYPVSDSANDAIVSYLMDLLVKGKSNNIVSTPANQLTEFGLAQPNATIDIKLKNQQTHQLILGKSNFNNRFVYAQTDSATQPNGNINVLLVSTDFVNAVNRELSEWRQTIDNSKSTPLPTNLPLPTP
>NC_019676.1|WP_015114087.1|3815094_3815949_-|formyltetrahydrofolate-deformylase
MSTTTATLLISCPDQRGLVAKIANFIYANGGNIIHADQHTDFSAGLFLTRIEWQLKGFNLPKDLIGPAFNAIAQPLGAKWELHFSDSVPRIAIWVSRQDHCLYDLIWRHRAKEFNAEISLIISNHPHLKVVAEQFGIDFHHIPITKENKPEQESKQLELLCQYKIDLVVLAKYMQIVSADFIGQFPHIINIHHSFLPAFVGANPYHRAFERGVKIIGATSHYVTTDLDAGPIIEQDVVRVSHRDEVEDLVRKGKDLERVVLARAVRLHLQNRVLVYGNRTVVFE
>NC_019676.1|WP_015114085.1|3813980_3814778_+|hypothetical-protein
MNIQQLRQSLKMKWLGYYQQNHPWLVKMQVWGSYDGLRRPSSGFILATLSVLEPEFEQMLSFMMDLNNNPDAIVTALGLNFNPDEELRLTNLDDAVAINQCQSEFTESKSLEEKPVRSLATANDIIAQSPATIQHPENITSDLPQAHKPLPAFGFATKVTRQSSSKSHQNQPISSLALATTVPRNGKTIALAVELPNHRKLMPTSIVVSRQTSVVIPEKTVPSWTETTEVSPNGKSPQNLKTQPLTRTNARSIASWVDEFCQGRG
>NC_019676.1|WP_015114084.1|3813593_3813926_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MTNITQASNSAANSQASAHRCVQVCQNRTCKKQGAAQVLAALTNLPVPDVTVTSSSCLGQCGNGPMVLVLPDMVWYSSVQPREIPLLVEQHLRCGKRVKQMLYYRFHPQG
>NC_019676.1|WP_015114082.1|3809048_3811259_-|dynamin-family-protein
MPNQDETYKNLATSLKSASELLNLERTSHLYQDINSICNYLTNPNFRIAVFGPFNHGKSTLLNAILGTRTLPIDLIPTTGAAINVKYGSNVRTRIMLTDGTEVYRNGTEVLQQFAILDSNRQMRKDVASVEIFCPHTFLETGVEFLDLPGTNDRDEQDNLVREQLLGADLVVQLLDARKLMTLGERENLRDWLLDRDIKTVIFVANFLNLLEPEEQQQVQSRLRFVAESFRAELPPGFSNLYRVDALPALRARLKGDVSAASSSGLVAFETALQNIVGILQQNRGGVKLPRVQAIASQIQLSLKNKIDPIAHEFKDFNDKHTAKIEIKQKAKNLITQGFNQSLSELRDWLSLPKLLAKYQADAAVALAENNFKFWQTSKLKKDLTELQLAVMKWLYQAYDFFKEERPEDLLIPFPLEPQITLPPKSDNTEILSEPSAMAVGGGIGWLLGGPVGAAVVGSISYILNKNIQKQEEKSTNESYHQQVAKLCINATEDYLSQFSSQALSILSDFECQVEKVIYFQVPEESPEITKKRAELRQLQQGFNQLLSELEKVKITTNYQPYQETPKVIQPQQQSHRQQERVYTRPPQPENKAKTTEKKVEPPKQQVYSPPPKTAPSPNPAEVEAKFRNWEMDEEIARMKAQMRSPSFQNNKQQTNQNTQATKPPQSQTEKDKITRAYKILGVQQDAAFADVKQAYKTLVKKWHPDLFVNQPQMQKQAQEKMRLFNEAYTVLSNKN
>NC_019676.1|WP_015114081.1|3806534_3809000_+|after-VIT-domain-containing-protein
MTQTIERQAGGLYVQNAEQQQIAFPLKHTEVQAKIAGNISRVEVTQSFENPFTTTLEAVYIFPLPDEAAVDDMLIRIGDKIIKSSIKKRQEAQQIYEQAKQQGRTAGLLEQERDNIFTQSLANIQPGEQIDVIIRYSESLKFTAGNYEFVFPMVVAPRYVPGIPIEGNTGGVGSATAPMMQNQDTDIVPDGSQLNAPILPSGMRSPHDINVTIEIDAGVEIQDVQSPSHQLQIAYQGKRVLVKLAGGDKIPNKDLILRYQVAGDSTQATVLTQADERGGHFALYLIPALQYRQDQVVPKDVVFLIDTSGSQMGAPLMQCQELMRRFINGLNLDDTFSIIDFSDTTRQLSPVPLANNSQNRTRAINYINQLSANGGTEMLRGIRAVLNFPVTDPGRLRSIVLLTDGYIGNENQILSEVQQHLQPGNRLYSFGAGSSVNRFLLNRIAELGRGVSRIIRHDEPTDEVVDKFYRQINNPVLANINLQWEGDGDSPIIYPCTPPDLFAEQPLVLFGKKPDGRGGKLHITGIVAGGTRYQHTFNMNFEETGNSGIAQLWGRSRIKELMNLMVSGDTKLGVEAVTDTALTYQLLSQYTAFVAVSDDVRVNPLQETVSVQVPVEMAEGISYQGIFGSAVSAVAPSIMANMVSPAPVVQRKRSLQSPGAPEAESLMFEAPPVMAPGEELEIKLSYSSLDGILEEAPPPKMSRYEEQYRAFDESLEDEEPFLAEIAPVEYLEVVSVTGLDQEMIALLSQYLESIPLHKGFSGDLVFELQISKGRVRQVLFDEQVSTCKEQSVIDLIRRSLVSWRIPQMLTTTVSLTLRSQA
>NC_019676.1|WP_044500071.1|3805202_3806441_-|hypothetical-protein
MTEFQILLFTKRYTVIFNLEKSRESTITHLIMLNTSTYYVIAPIDGLHLDFDYRMYSAEVYGCPPNYVPNPDGCSEFRQPYEYLRSLTFKQYTELSHEGKIDNQTLRHLEKIPDRKLINFTCIAFEINLDREDYLYLNDEATNNSLFQYILNKGEQLLDVWRLCLFKPGEDFTIGSFGSVGNGIQCFWVGQNDIFPKFIARRISRYQLVQQPFDVLLSDFGTIYADITFRNLCCSAFNDVNTSLINRIFNALRAFRESRDIPNWEARFRHLAVIAESLAKKEETERLRGNELRERIAKIASHGWEIYKSYNSSVLSPPGLQARQYRLINKRYKEMGWKNKNEAQKIIKDLWDNVRNPLSHTVNTVTSLKRNPIEDMVNIEKIIVTIINGICTAYEVEEFYGSSAYDIILDRE
>NC_019676.1|WP_015114079.1|3804653_3805142_+|DUF3368-domain-containing-protein
MIIVSDTSPINNLAAINHLNLLQQLYDTVIIPEAVYQELTDPEFPVAGATEVKTFDWIQTRQVSDHNVVEALANDLDKGEAEAIALALEIKADQLLIDERRGRLIADRLQLRYVGILGILVEAKSRGLISTVKPLMDALRNQAGFWIDAALYNRVLQLVGED
>NC_019676.1|WP_011318184.1|3804411_3804657_+|UPF0175-family-protein
MSIVIPDEILAATRMTDAELKQEIAVMLFQKDKLTLAQASRLAGMNRIAFQHLLASRQIPVHYGVDDFEQDIKNLQDMGRL
>NC_019676.1|WP_015114078.1|3802835_3804314_-|NACHT-domain-containing-protein
MSNSLKASTTGLTIVDKARKRLGWTKTSTARWWQDAHTSRATLRRFWQGDRIQQEIFIAICQAVGINDWQSIAEIPNADFEETSTQYLDWDEAPDVESFYGRNQELTQLEKWIVGDRCKLIIITGIAGIGKTALALALADRLQLKFDGLIWKTRHSTPSLVSLLDGLLNIFEEAAVDDIPQNTAKLLHHLQQRRCLLILDGLDESEKHYHQFIQQLSRAHHQSCIILTSREQPNIIESNTKTVRSLTLTGLPKAGAVELLQARGFTGKELGLSPLIQLYRGNPLALKLVTPLIQSVFGGNIAAFLSQNTIVIGDRLRAILKKQFEQLSDLEQHILYWLAIWQQPISFSRLQTHLLISLDPATILDAIVSLEKRSLLEKWICSGEPAFTLQPLVMKIVTDELVERTTQEIIQVVQSGDICNFKILRTHWLLRPGSDDIVGDRILHQLQEKLLQIYGANLVQNLQQILLLLNDKSPLAIGYIACNLTTIINRLG
>NC_019676.1|WP_015114090.1|3818586_3819396_-|ABC-transporter-permease-subunit
MGIVLANIIAIYRRELQSYFISPLAYAIAGVFWFISGLFFVTILFGPDGILPAVAAIDLQGQQGVPVPLIDVPYEFIRAFLDRMGWLLLFILPILSMGLYAEERKRGTLELLATSPLTNWAVAVGKLLGVVTFLITMVAPLLIFEAIALSGSNPPMSPAIPLLGHLGLILLASAILSLGMFISSLTDSTILSAVLTFGLVLLLLFVDLIAKSIGGPVGEALGHLSLLKHYNTFIQGIFDTSALMLFASYIFLGIFLTAQSIDALRFQRQ
>NC_019676.1|WP_015114091.1|3819396_3820398_-|ABC-transporter-ATP-binding-protein
MIEVDHLSKTYGSTPAITDVTFRVEPGEILGFLGPNGAGKTTTMRILAGYLPATSGTAKISGFDVHDNSLAVRQRIGYLPETPPLYPEMTVEGFLHFVARIKGVAAGDLTAKVKAAIARCNLQDKQRVIIRKLSKGYRQRVGIAQAIVHDPPAIILDEPTVGLDPRQIIEVRNLIKSLAGTHTIILSTHILPEVSMTCSRVAIINRGKVVATNTPESLMTQLTGGSGYELEIEGEANLAKQVLQNVAGVSLVESIPGHHLIHATDGRAYLRVIAQPGTEPGREIAATLIRAGFGLQEMRRVSATLEDVFLQLTTEEKHFEPEINSIANEGEAA
>NC_019676.1|WP_083889799.1|3821296_3822790_-|iron-uptake-porin
MAQVTSVSQLNDVQPSDWAFTALQSLVERYNCIAGYPNNSFRGDRAVTRYEFAAGMNACLDKINQIIAVAAPSAELVTRADLETIKRLQTEFSSELATLQGRVDSLEARSAEIQANQFSTTTKLNGLLIAGVQGRSSNRGDVNPRDGIKDSNDNGTNINVLTFSYLSLTTQLTPRSVLFTGLLATDGVTSPRFSNDVILSYEFPTDKKLIISDLNYRWLVTDKLAVMVGTEGVNMSNAFRGPVRVESAATGPLSLFAQRNPILNTGFGHGGVAVDWQFAKRASIQALYTSYTPGKPGERSGLFDGTTTTAVQLLLTPIDTVDLSLYYVNNYASNGCLLTFVGDDCLTASSAPLQTNAYGGTLSWQISPRVTLGAWGGYTTSSIPGRSGSVETTNYMVFLNFPDLFAPGNLGGIYVGQPPKITSSNLPVGNNVPDFENTGLGRAGGQPGTTTQIEAFYRFRMTDNIYITPGIIHILEPGHTPDSDPITIGILRSTFLF
>NC_019676.1|WP_015114093.1|3823185_3824598_+|hypothetical-protein
MAHPSRRLSLKFFRRNQTSTDIVEKPPEQGNLLTSTIAITVLFSSAGLIMVFAWISWLFIFNPEKIVWLNKFLPEWAQIPFGYSEHPHTLPEIQASLQAQKQTSGATLALDKNENAFLLPIFQQRTNCQSNCQELAALRVYQLATDSEFKSKREKYYRLATQLSVTGIEKSLIEGTAETDDTNTLLPLNTIKGFDDETPASGAWFNLQGQYKKGTTAIAYGQILYYNPERSNLIQLLSWKNSNGQLPKWQQVTGSDAKELILDQTVGLEPQLRVYQVKPTKLYLNPIQLDKISLKPPAIKDTAYQNAISIARSGLWTPALESLKSLQKQGKIALPATAKAQIDLIRLHAQFTKAQAEKTWASPSEQVLADLIDGRWSQALKVFKSSPQNAQEISILLKAEKGNLWNRVATTLEVNPQQPEVLAWGALILAVQQGNESANSWLEKQPKITKDTIAEIQYLLKRLNHESAKS
>NC_019676.1|WP_015114094.1|3824810_3825290_-|MarR-family-transcriptional-regulator
MKLDKPSHGATSEECAAKVMDTIPLVMRFIRKEMREHNAGFLSIPQLRSLAFINRNPGGSLSGLAEHLGVTSATASATIERLVQRNLVQREHHPQERRRIVLNLTDEGKYHLQQSLNHTRAQIADILNSLSAEEFAQIEQGLTFLKNVFDQTEIHPPES
>NC_019676.1|WP_157374055.1|3825581_3825755_-|hypothetical-protein
MSLTEFCYCQGLLQNLVAVFYLWCLTIALAKTIRLSNTNSALQHTSDRRIRNSQTTS
>NC_019676.1|WP_015114095.1|3825970_3826510_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MGDKYLKLSELNLEGQFLGFSGMKSGKAKYLQLAISSGNLHIKLPKKLRGILQCSLTVGEQIHICGVTKVNTHTGKMKIKAHQVTQLDICSNQEFSPPPQAKIMVCQKSGCVKRGGKGLLSELEKTLCDRGLLDKVKIEHTDCQKRCSSAPNCVLQLGKKKYKKLHPEAIASLLENHLT
>NC_019676.1|WP_015114096.1|3826616_3826967_+|four-helix-bundle-protein
MSYREQFIWKNRIALAIQCYQLTEHFPKSELYGLTSQIRSSCVSVPSNIAEGYGRKTKTEYIQFLHIALGSLRELDTQLIIAKEVKLANQELFIPVMGEVDRLQGILVSTLQKMKT
>NC_019676.1|WP_015114097.1|3827004_3827208_-|putative-nitrogen-fixation-protein-NifT
MKVMLRMNDAGNLTVYVAKKDLEEVVVKQTDGEAGKILTLANGWELEFPEIPDAANLPKTVEAKRLA
>NC_019676.1|WP_015114098.1|3827182_3827470_-|nitrogen-fixation-protein-NifZ
MQPDEYELESEPDFEIGEKVRLRKQIKNDGTFPGREIGEILAKKGDIGYISSIGTFLQRSYIYAVHFLDKGIVVGCRKKELESAEENHEGNATDE

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Crispr_ID: NC_019676_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_18

4119123-4119240

Orphan

Consensus_repeat	Method
GCTTGCGCTTGGGCAATATCTTGAGGGCGATTACCTGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_18

>merge|NC_019676|18|4119123-4119240|CRISPRCasFinder
GCTTGCGCTTGGGCAATATCTTGAGGGCGATTACCTGCTTCGACTTTTTGTAGATTTGCTTCAGCTTGGGCTAGTTGCGCTTGCGCTTGGGCAATATCTTGAGGGCGATTACCTGCTT

>NC_019676|18|17|4119123-4119240|CRISPRCasFinder
GCTTGCGCTTGGGCAATATCTTGAGGGCGATTACCTGCTT	CGACTTTTTGTAGATTTGCTTCAGCTTGGGCTAGTTGC
GCTTGCGCTTGGGCAATATCTTGAGGGCGATTACCTGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114314.1\|4123363_4124338_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_019676.1\|WP_015114304.1\|4112792_4113752_+\|Orange-carotenoid-binding-protein	unknown	unknown	gnl\|CDD\|370323
NC_019676.1\|WP_015114303.1\|4112367_4112655_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019676.1\|WP_015114319.1\|4127241_4129029_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_019676.1\|WP_172641487.1\|4116011_4116674_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_019676.1\|WP_015114316.1\|4125126_4125783_-\|DUF2301-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|370802
NC_019676.1\|WP_015114298.1\|4108843_4109506_+\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NC_019676.1\|WP_015114308.1\|4116765_4118055_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_019676.1\|WP_015114306.1\|4114512_4115901_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_019676.1\|WP_015114315.1\|4124476_4125127_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_019676.1\|WP_015114318.1\|4126738_4126894_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114301.1\|4110641_4111388_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114310.1\|4120134_4120599_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114302.1\|4111476_4111983_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114313.1\|4122906_4123290_+\|DUF2358-domain-containing-protein	unknown	unknown	gnl\|CDD\|370865
NC_019676.1\|WP_015114305.1\|4114039_4114468_+\|ssl1498-family-light-harvesting-like-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114312.1\|4122283_4122847_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114317.1\|4125824_4126628_-\|SAM-dependent-chlorinase/fluorinase	unknown	unknown	gnl\|CDD\|376645
NC_019676.1\|WP_015114311.1\|4120802_4122113_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NC_019676.1\|WP_015114299.1\|4109553_4110138_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114314.1\|4123363_4124338_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_019676.1\|WP_015114304.1\|4112792_4113752_+\|Orange-carotenoid-binding-protein	gnl\|CDD\|370323	pfam09150, Carot_N, Orange carotenoid protein, N-terminal. Members of this family adopt an alpha-helical structure consisting of two four-helix bundles. They are predominantly found in prokaryotic orange carotenoid protein, and carotenoid binding proteins.	9.49275e-90
NC_019676.1\|WP_015114303.1\|4112367_4112655_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.61913e-08
NC_019676.1\|WP_172641487.1\|4116011_4116674_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.39015e-115
NC_019676.1\|WP_015114298.1\|4108843_4109506_+\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	5.83262e-26
NC_019676.1\|WP_015114308.1\|4116765_4118055_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.86637e-69
NC_019676.1\|WP_015114306.1\|4114512_4115901_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.88292e-54
NC_019676.1\|WP_015114315.1\|4124476_4125127_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	0.000181589
NC_019676.1\|WP_015114316.1\|4125126_4125783_-\|DUF2301-domain-containing-membrane-protein	gnl\|CDD\|370802	pfam10063, DUF2301, Uncharacterized integral membrane protein (DUF2301). This domain, found in various hypothetical bacterial proteins, has no known function.	9.83222e-79
NC_019676.1\|WP_015114313.1\|4122906_4123290_+\|DUF2358-domain-containing-protein	gnl\|CDD\|370865	pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358). DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.	3.86157e-41
NC_019676.1\|WP_015114319.1\|4127241_4129029_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_019676.1\|WP_015114317.1\|4125824_4126628_-\|SAM-dependent-chlorinase/fluorinase	gnl\|CDD\|376645	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase. This is a family of proteins, previously known as DUF62, found in archaebacteria and bacteria. The structure of proteins in this family is similar to that of a bacterial fluorinating enzyme. S-adenosyl-l-methionine hydroxide adenosyltransferases utilizes a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. This family used to be known as DUF62.	1.84547e-117
NC_019676.1\|WP_015114311.1\|4120802_4122113_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	4.05786e-15
NC_019676.1\|WP_015114299.1\|4109553_4110138_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.31393e-32

>NC_019676.1|WP_015114308.1|4116765_4118055_-|ABC-transporter-permease
MVKSLEKISKIPKIPSKSTVPLTEILSMAVETLWSNKLRTGLTMLGVIIGIASVIAITSVGQGVQKSVENQIQALGTDVLQVLAGAPRSGNVRQGLGSTTTLTWEDAKAIAQQAPSVDLVSAYLQRNAQVVYAGENTSTTIYGTDLNYPDARNTYPQEGRFFNQEELDSSKQVAVIGPTVKRTLFGNSTKVIGEQIRIQGETYEVIGITEPKGAQGPMDRDDQIFIPLTSMSGRLVGNNALTGVSVSGILIKSSNSQKLEAAQFQVTNILRLRHEIYPPQVDDFRITNQADIVSTFTNVVGLFTIMIVAIAGISLVVGGIGIANIMLVSVVERTREIGIRKAVGATNAAILNQFLAEAIVISIVGGGIGMGSGILIAFVAANIFKFPFVISFASVIAGFGLSLSVGLVAGVIPARNASKLDPITALRSD
>NC_019676.1|WP_172641487.1|4116011_4116674_-|ABC-transporter-ATP-binding-protein
MIWMESITKTYKLGEMSVPILKGIQLAIEEGEYVAIMGASGSGKSTLMNILGCLDRPTNGDYIFEGRNLTTFNDDELAYIRNQRIGFVFQQFNLLARSTALENVMLPMVYANLPKSKRRERALDALTRVGLGDRILNRPSQLSGGQQQRVAIARALVNRPALVLADEPTGALDTETSYEVMNLLTELNQQGITIIIVTHEPDIAAQTQRTIRVQDGLIVG
>NC_019676.1|WP_015114306.1|4114512_4115901_-|TolC-family-protein
MLSSVHSTWVVVAIALLISAVPRNANAQNSSQTPPQNLNPSANPLQFPTKREEVQIQKTVPISLAQALELARRNNRNLQVTILELERSRAALRESQAALFPTLDINGSVTNSGNGFSSSDSQPSTSFNGTAQLNYDLYTSGSRQAIIKQAEEQLRIDELDVENQSREIELNIKTQYYNLQQADEQVRINQSAVANAQASLRDAQARERAGVGTRFDVLQAQVNLANAQQDLTNSLSDQQIARRQFGTLLSLPQSVDITAADTVALAGLWQPSLEQTIVEAFQNRPELRQQIAQRNISEQQRRQALAQVRPQVGLVTSYNLLDRFDDSVSVTDGYSIGLQASVNLFDGGAANARAAQARTNIAIAETQFANQRDQIRFNVEQYYAQLRSNLDNVQTSSVGLEQAREALNIARIRYQAGVGTQTEVIEAENDLTRAEGNRVTAILDYNRALANLQRAVSARASR
>NC_019676.1|WP_015114305.1|4114039_4114468_+|ssl1498-family-light-harvesting-like-protein
MLYTDKEGKTLNSENCITANSFFIESEVYICEPLEMHFNQAGDLKAGKKPKKAIANLRSDGSELIPAEVQGHINKEGNQLLNVPLATGYTVDDEGMMNTYAIQPVMSLAEYPSPKQQQRYVVQGIVAILFVALTLMTAFAVS
>NC_019676.1|WP_015114304.1|4112792_4113752_+|Orange-carotenoid-binding-protein
MSFTIESARSIFPDTLVANVVPATVESCNQLSAEDQLALLWFAYTEMGVTITPAAMGAANMVFAEKTLTQIKQMSAEKQTQMMCDLVNHADTPICRTYSSFGTNIKLGFWYELGEWMKLGIVAPIPEGYKLSPQASDVLEAIRQLEGGQQLTVLQNIVVNMGYTSKVSAQNVKQPVVPPQDIAPRAKVSIEGIDNLTVLSYMENMNAFDFQGAVALFTEDGALQPPFQEPIVGQKNILAYMREECYGLKLIPERGVTESAAGEFTQTKVMGKVQTPWFTDSVSINLAWRFLLNPQGQIFFVAIDVLASPQELMELGLIR
>NC_019676.1|WP_015114303.1|4112367_4112655_+|pentapeptide-repeat-containing-protein
MDANEVLRRYANGERNFREADWRGISLTNANLSGIDLSGAHLSNADLSDSDLSNANLNWAGLKGSNFNRANLRGAKMPDGRKHNDFLESANYFFS
>NC_019676.1|WP_015114302.1|4111476_4111983_+|hypothetical-protein
MKKAFFWTQPLFLLGISLVLYIMALSLPALAFEIVEYKTIYTNSITIMKGAEVTMWGVLGLLFLQAPAIGWLANPLYWLSCKFFVQKKYYFSIASAFSAIIVGFTGTISTYWFPLPNGSNPDSQLLLIKLLPGFWLWLAAPAFLMMITSGFVYGKYKNSLENKSVKFP
>NC_019676.1|WP_015114301.1|4110641_4111388_+|hypothetical-protein
MTKQISLNTLWDLAISKDRVFDSDEFAHLPEAARRYLEHAIAPGTKIASAVRLQMHGEIKLKSWIPFKAEQVICWEHGLIWSATAWMNGLPIVGSDRIIDGVGAMQWKLLGIFPVMIASGSDITRSAVGRLQSESICLPSVFYGDDVTWTTIDSSHLHSSFVLQDERAELDLTIDQTGRLKTVKLPRWGNPEGAEFHDVDFGAIIDDEGTFSGYTIPTRLRVGWYFGSERFESEGEFFRATIDNAIYR
>NC_019676.1|WP_015114299.1|4109553_4110138_-|Uma2-family-endonuclease
MRSPIPVFSVAEYLEAETKSELRHEYLGGQIFAMAGGSKAHNIITLNIASRLRSQLRGGASDVFMSDMKVKLSATNQNQTIFYYPDVVVTCSSEDRDNYFLNYPCVIFEVLSPSTEVSVGVARRRHRREKLVNYQTIGSLQEYVLVSQDEIKVEVYRQDLLGNWTQEILGIEDKLVLNSVNLQLTMTDIYEDIF
>NC_019676.1|WP_015114298.1|4108843_4109506_+|DUF2807-domain-containing-protein
MRSKLYSLAASLAALSMFAACSLNLGGLRGSGIVKTESREVAGFSSISFKSVGRVRVQQTGKESLTISAEDNILPLLDSRVKDHILYLGIVNDSSFAPTKPIEFVLQVKSLKSLHIDGVGSIEAKGIQGKQLSVSLDGVGSMTIAGSTDVLDLSLSGVGSFKGEEFKTKQATVRHSGVGSAVVNVSDRLDATVSGVGSVEYIGSPQVRESVKGVGSVKKR
>NC_019676.1|WP_015114310.1|4120134_4120599_+|hypothetical-protein
MNNLLRLLTISSLLLSTGLPSFATNKSFVTEKHFQGDVEPKNCPLQKRKKGIFIYNLCQVKGKPISLYIQSVEASDGSENDALDVAVLKYKNGKLIHVSAEDFHRYGFRNQKLVAAWHLDNTIENVSSSQYRAIEKRFLAESRKGLELFGIKQK
>NC_019676.1|WP_015114311.1|4120802_4122113_-|beta-propeller-fold-lactonase-family-protein
MNILSKTSRNNRQVSKKCLTISALATLVLTGGLAVQSADAHWYQWYRSTGIVYTQSNIPTPNGNSILGFRSNALGTLTPLPTASFPTGGAGIPNAPITGRGPFFITAFASDQEVIVNPEKTRLFAVNSGSNTIAVFNINKDGNLSPVEGSPFPSGGVAPVSLGLAGDILTVVNQNLLPQIPTQEANDSLPNYTTFRVTPRGRLIPIPNSTASVPRGSLPTQALISPNKRLLFGMDGGTGLLRSYQILPNGRLQQSPNSPQQLPPAAFPPNPLGLTLGLQVHPRQPILYVGFTLSNQLGVYSYEPDGDLHLLRTVPNSGRAICWLVTNRAGTRLYTTNPLDNSVTVYDIGRNPSSPVEIQRVVLRGEMGTGGAQLTLDSTESFLHVVSQSAVNIMPANNRISVLKVNQYDGTVTEVSSSPRLIPSVNNSFPQGIVAN
>NC_019676.1|WP_015114312.1|4122283_4122847_+|hypothetical-protein
MTPEEIAVTLTELFSEEAVNAIAPGSWQIDSSTFRLLVLLSEDQTWLRVLLPIMPLQEAETFLTQFLEANFDETQEVRYAIYDGVVWGVYHHNSGTLASADLANAIARLLSLHKSGLNDVFNHFIENRLRQIIQAAKQQGQSLQATMQNLDRFYAEGVMGEINQSVDDREQVLATWRSQLERLWNEV
>NC_019676.1|WP_015114313.1|4122906_4123290_+|DUF2358-domain-containing-protein
MDIIETLKNDYQRFPENQTYSIYAENVYFQDMVFKFRGVKLYQWMIKFIKTFFLNPKMDLHNIQRLGDTIKTEWTLSWNSPLPWKPRIAISGWSELLLNADDLIISHIDYWNCSQVDVLKQHFFPIK
>NC_019676.1|WP_015114314.1|4123363_4124338_-|quinolinate-synthase-NadA
MFTTAFAPTDKTQLGELPRDLFAAIEHLKQELNAVILAHYYQEPDIQDIADFIGDSLQLAKAAAETNADVIVFAGVHFMAETAKILNPDKLVLLPDLAAGCSLADSCPPKEFAAFKAAHPNHLVISYINCSADIKAMSDIICTSSNAVKIVQQIPKDQPIIFAPDRNLGRYVMEQTGRDLVLWQGSCIVHETFSEKKIVQLKIAHPQAEAIAHPECETSVLRHASYIGSTAALLKYCQTSPSQEFIVATEPGIIHQMQKLAPNKQFIPAPPTNNCNCNECPFMRLNTLEKLYLAMKNRAPEITMSEDIRLAALRPMQRMLEMSA
>NC_019676.1|WP_015114315.1|4124476_4125127_-|YdcF-family-protein
MRLIQRQEIWILTAQGWALFLAVSAAAIFFIVHNLYPFLAVNSPIKSADALVIDGWISDYALAQAAAEFHTGSYHQIFTIGSKIEQGFYLSEYNNFAEIAASTLSKLGVPEEKLIVVPAFNVVRDRTNASAVALLQHISDKNLPIKSINLFTTDAHARRSWLIFKKIFAPKIQVGIISAKPQDYDVQKWWNSSQGVRVVISEAIAYVYARLVNWQL
>NC_019676.1|WP_015114316.1|4125126_4125783_-|DUF2301-domain-containing-membrane-protein
MTTQTLSPSPVYQGQFGEFTINQSDRTSVIIYRAGLMIAALSFAIGTALTLFYNNPTTIQAITPLYTCFSLALGVSLLTIHIYMAPLHRILQVFWLIGSISAFIFAHFDSQPFAVTVYTNPLTILGIGFTFAALTGIYFKEAFCFNRLETKALTFTVPILLLGHLVGVLPIQLEQILLGVWATLFLVFALRKTFQAIPADIGDKSVFAYLKAQSSAKV
>NC_019676.1|WP_015114317.1|4125824_4126628_-|SAM-dependent-chlorinase/fluorinase
MLKSQLNQASLLTLLSDFGDRDVYVGVMKGIIAQINPLLRVVDLTHQIPPQNIAAARFCLMNAYPYFPDGTVHIAVVDPGVGGKRRAIAVEFAGGFLVGPDNGIFSGVLSQNPAIAAVELTNTDYWRTPQPSRTFHGRDIFAPVGANLASGVPLKYLGKEINPATLLQIGMGKCQTTSCGVLGQIQYIDNFGNLISNIPGNYVVGKTWLVKIAGLTIPGCETYSDGEVGAAVALVGSHGWVEIAINGGNANSQLQINWQDTLEVINH
>NC_019676.1|WP_015114318.1|4126738_4126894_+|hypothetical-protein
MSQNRLQAVRQTKEVHRQNLRKNLEHRLEVARSQGDQRLINQLEAEMRYLG
>NC_019676.1|WP_015114319.1|4127241_4129029_-|aspartate--tRNA-ligase
MRTHYCGELRKEDIGETVTLYGWVDRRRDHGGVIFLDLRDRSGTVQIVSDPQRTPNSYEQANALRNEYVVEITGRVTQRPEESLNTRIPTGEVEIYADKITLLNAVRKQLPFQVSSADTESVREDLRLKYRYLDLRRDRMAQNMQLRHQVVKAMRRYLEDGENFIEVETPVLTRSTPEGARDYVLPSRVNPGEWFALPQSPQLFKQILMVSGMDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSQEEIIELNEKLVCQIFKTVKGIELPHPFPRLTYAEAMERYGSDKPDTRYDLELVDVSDILKDSGFKVFKDAVAHGGIVKILPIPNGNEQISNVRIKPGGDIFREASEAGAKGLAYIRVREDGEIDTIGAIKDNLTAEQKAELLGRTGAKAGYLLLFAAGDVGTVNKTLDRLRQFTAKEFGLINPEKLNLLWIVDFPMFEWNADEKRLEALHHPFTAPHPDDIHDLKTARAQAYDLVFNGFEVGGGSLRIYQREIQEQVFETIGLSPEEAQSKFGFLLEAFEYGTPPHGGIAYGLDRLVMLLAGEESIRDVIAFPKTQQARCLLTDAPSGVDIKQLKELHVASTYKPKA

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Crispr_ID: NC_019676_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_19

4291641-4292700

Orphan

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	PILER-CR
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CRT

14 spacers

The CRISPR arrays of NC_019676_19

>merge|NC_019676|19|4291641-4292700|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACCGTATGAAGTTCATCTGCCACAAACAGACGAACAGAGTTTTCATCCCCGTGAGGGGTAATTAATTGAAAACTCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGCGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACGTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACGAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACGGTTATGCTGATAAAATGTCCACGAACTTTAACACCGCGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACTATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACCGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACTCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATGGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACTTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACCGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACCCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACGAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATTGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACGCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTAGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAGAATACTCACTTCAACTAAATATTCCTCAAGAAAAGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACAATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCACGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAACCCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGCGTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|19|11|4291641-4292700|PILER-CR
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CGTATGAAGTTCATCTGCCACAAACAGACGAACAGA
GTTTTCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GGTTATGCTGATAAAATGTCCACGAACTTTAACACCGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAATACTCACTTCAACTAAATATTCCTCAAGAAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCAC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|19|18|4291641-4292700|CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CGTATGAAGTTCATCTGCCACAAACAGACGAACAGA
GTTTTCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GGTTATGCTGATAAAATGTCCACGAACTTTAACACCGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAATACTCACTTCAACTAAATATTCCTCAAGAAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCAC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

>NC_019676|19|11|4291641-4292700|CRT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CGTATGAAGTTCATCTGCCACAAACAGACGAACAGA
GTTTTCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GGTTATGCTGATAAAATGTCCACGAACTTTAACACCGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATG
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	TTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATT
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	GCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AGAATACTCACTTCAACTAAATATTCCTCAAGAAAA
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	AATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCAC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC	CCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGC
GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114464.1\|4300316_4301414_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_019676.1\|WP_015114460.1\|4297953_4298277_-\|phasin-family-protein	unknown	unknown	gnl\|CDD\|226447
NC_019676.1\|WP_015114452.1\|4285679_4286891_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019676.1\|WP_015114456.1\|4290061_4290520_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_019676.1\|WP_044500942.1\|4298412_4298721_+\|TIGR03792-family-protein	unknown	unknown	gnl\|CDD\|274785
NC_019676.1\|WP_015114450.1\|4282112_4283279_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019676.1\|WP_015114451.1\|4283433_4285674_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NC_019676.1\|WP_015114467.1\|4304099_4304591_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_172641491.1\|4302348_4303980_+\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NC_019676.1\|WP_015114465.1\|4301773_4302133_-\|rhodanese-like-protein	unknown	unknown	gnl\|CDD\|238786
NC_019676.1\|WP_015114455.1\|4288915_4289842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371357
NC_019676.1\|WP_015114458.1\|4293171_4297299_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|236093
NC_019676.1\|WP_015114463.1\|4299441_4300122_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|188247
NC_019676.1\|WP_044500940.1\|4290816_4291359_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_019676.1\|WP_015114459.1\|4297352_4297874_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NC_019676.1\|WP_015114453.1\|4286931_4287897_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|366335
NC_019676.1\|WP_015114448.1\|4280674_4280902_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114449.1\|4281246_4282086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133018
NC_019676.1\|WP_015114454.1\|4287903_4288914_+\|nucleotide-diphospho-sugar-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|371357
NC_019676.1\|WP_015114462.1\|4298760_4299420_-\|DUF2834-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114460.1\|4297953_4298277_-\|phasin-family-protein	gnl\|CDD\|226447	COG3937, COG3937, Uncharacterized conserved protein [Function unknown].	2.25356e-33
NC_019676.1\|WP_015114452.1\|4285679_4286891_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.7901e-24
NC_019676.1\|WP_015114456.1\|4290061_4290520_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	7.3857e-55
NC_019676.1\|WP_044500942.1\|4298412_4298721_+\|TIGR03792-family-protein	gnl\|CDD\|274785	TIGR03792, conserved_hypothetical_protein, uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown. [Unknown function, General].	1.00245e-32
NC_019676.1\|WP_015114450.1\|4282112_4283279_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.16913e-39
NC_019676.1\|WP_015114451.1\|4283433_4285674_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.24131e-135
NC_019676.1\|WP_172641491.1\|4302348_4303980_+\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	3.08164e-158
NC_019676.1\|WP_015114465.1\|4301773_4302133_-\|rhodanese-like-protein	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	9.02345e-45
NC_019676.1\|WP_015114455.1\|4288915_4289842_+\|hypothetical-protein	gnl\|CDD\|371357	pfam11051, Mannosyl_trans3, Mannosyltransferase putative. This family is conserved in fungi. Several members are annotated as being alpha-1,3-mannosyltransferase but this could not be confirmed.	0.00125829
NC_019676.1\|WP_015114458.1\|4293171_4297299_+\|replicative-DNA-helicase	gnl\|CDD\|236093	PRK07773, PRK07773, replicative DNA helicase; Validated.	0
NC_019676.1\|WP_015114463.1\|4299441_4300122_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|188247	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.	2.24881e-08
NC_019676.1\|WP_044500940.1\|4290816_4291359_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.63383e-36
NC_019676.1\|WP_015114459.1\|4297352_4297874_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.06548e-61
NC_019676.1\|WP_015114453.1\|4286931_4287897_+\|glycosyl-transferase	gnl\|CDD\|366335	pfam00852, Glyco_transf_10, Glycosyltransferase family 10 (fucosyltransferase) C-term. This is the C-terminal domain of a family of fucosyltransferases. This enzyme transfers fucose from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This family is known as glycosyltransferase family 10. The C-terminal domain is the likely binding-region for ADP (manuscript in publication).	1.00264e-07
NC_019676.1\|WP_015114449.1\|4281246_4282086_+\|hypothetical-protein	gnl\|CDD\|133018	cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.	0.000386603
NC_019676.1\|WP_015114454.1\|4287903_4288914_+\|nucleotide-diphospho-sugar-transferase-superfamily-protein	gnl\|CDD\|371357	pfam11051, Mannosyl_trans3, Mannosyltransferase putative. This family is conserved in fungi. Several members are annotated as being alpha-1,3-mannosyltransferase but this could not be confirmed.	0.000611074
NC_019676.1\|WP_015114464.1\|4300316_4301414_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.05446e-134

>NC_019676.1|WP_044500940.1|4290816_4291359_+|transposase
MEYRRVKVEGGTFFFTVVTHNRREFLCELENIILLRQAFKKVIAQYPLIVDAIAILPNHIHCLWSLPPGDSDFSNRWRLIKNYFSHRCDVKYHGKISASRHNKGELAVWQRRFWEHQIKDEVDFIRHCDYIHYNPVKHGYVKAPKDWQYSSFMLYVQRGIYHIDWGAEEDIEFPQDIGNE
>NC_019676.1|WP_015114456.1|4290061_4290520_+|50S-ribosomal-protein-L9
MAKRVQLVLTQDVSKLGKLGDLVEVAPGYARNYLVPKSLATRATPGILKQVERRREQERQRQLELKQQALEQKAALEKVGSLKIAKQVGENEAIFGTVTSQDVADAIQAATNQEVDRRGITIPDIGKLGTYKAEIKLFSDVTAQIDVEVVAS
>NC_019676.1|WP_015114455.1|4288915_4289842_+|hypothetical-protein
MSQGIYIFANDKVTDHAIALLNSIRLTDPDIPIVMIPYNENYHNIAAILNQHYGVQLYEDLEFINHLSQKLFDIFGGQFFASPNKLRKPACWFGPFDEFLYIDTDVVVFEKLSNNFNYLAEYDFICCDYQHLGGIKNVFSPHVVEAQIFTQAETKDIFNSGFWGSKKNIFSEQDLYDTFAECAAHPEYFDFSEKVSDQPILNYLLLRRIPRRFNIVRRPEKAPGNWAGSPQFQQQGQILIDPTVNQPLQFLHWAGIHIQPGCPYWEIWEHYRNLNLAIPPAAIPALPKQSQWETTFKTVKKQVRKIFT
>NC_019676.1|WP_015114454.1|4287903_4288914_+|nucleotide-diphospho-sugar-transferase-superfamily-protein
MTNGIYTLANDYVYNQLVALLNSIEVNAGDVPVCVIAYNDQIDLVRAEVASRKNVTLLEDPEIFARWEEFSHRVWQSHPTAIETWQAKGIQKFYRVGENRRYCAFDPGSYFEKFIYLDADTLVMQPLDFVFDKLDEYDFVAYDFQYKDPAHIFKVSSPKLYEVFSQERIESEIFCSGFYASKRGVFPPEQREWLLTQLNNGDSEILYMGAPNQSVLNYMRMKSNVSYYNFALNLPENKLTGCCANSPHFVNQADVLYDKGNKLTFLHYIGLSSKLFNRLCAGENVDFPYRDIFLHYRYLKAPEQRPKFTTKPKAYNAPPSLGKRILKKLGLAVGGK
>NC_019676.1|WP_015114453.1|4286931_4287897_+|glycosyl-transferase
MQITKVGMISSYKALKTQGDWLWQQTPHPFGVWQNIQIQALASKPEFLLMYQFDFPHILKKPKETWLSRLQKKQRSPEVDINSLLRGVSKEKIIYLMREPPLDEVVGKHKKVYQTAQEYCGYVSGPDDFAPIPEYMPAIWYHSNSFKDLNEMPPPEKVAPCSWITSGINRTANHRQRLSFLQSMQSSNIKFDLYGRDLPASAKSQGELGNKWYGMAPYYYNLAIENYADNNWYVSEKLWDALLAWCLPIYYGGPAADKLLPPGSFLRLPSLDEKGIAYIQEVTATPDAWYAAKDAIAEARQIILHKLNLLNWLANFVKNNG
>NC_019676.1|WP_015114452.1|4285679_4286891_+|glycosyltransferase-family-4-protein
MKNPSLQKNYSFFLTEELPKPDAYYVQAANAANGAANLGCPTVLIYPQKGWEAMNPIHLLQPFQPEKPPESVIKYYNLQDKLQVARLPMPWPIDYFKNKFTNSKTIATKYYFPFYIRSTTKIVHAWNWNFIKAAIQNGVPAIYEHHHHEDKQFEPAIVNHPLFQVAVTVADTVRESMIKHGMPPEKLIKIHNGFNRLFMQRQPEQAAAWREKLLQNQRSHLVVYAGALQQFKGIDILIDVAQQMPHVQFACAGGKQTEVAHYQKLAQAKQTDNICFLGHVLHDELAPLLQAADILAHPHCSGQAATFTSPLKLFDYLASGNPIVATEIPSLIDFKDTVAIAAWCEPDNPVKFAAALQQVLATHPKKIDGYPETIEFVKQFSWENRAAKILSYVDESYRPQLVA
>NC_019676.1|WP_015114451.1|4283433_4285674_+|ATP-binding-cassette-domain-containing-protein
MSTKQLLVRFAKPYPGLILLTIVLGFSGALFNGVSTALIVPVILKIVGQDVDLTKAPAILKKIMTPFDGVPDNYRILVMAGVIILVIILKNLATYSSSLVSNSLTRMLMSDMREAGLKLLLEIDIDYYAKMKVGDLINRLGGEIGRSATAIGNTFKLAILGITILVFIGLLLSISWQLTLASTALLSLVTLVNQYAIARAKKFGKQLTEMSKAYSISMLETLNGIRLVKSTGNEGTEYHRIQKLIREREKADFQSQANSEIIAPLSEIMGISALIVIVFLSKTFFANQIASLSAVLLTYLLILLRLLPLISQLNGLRSSFASTSASVEAVTDFLRLDDKPFMSKGEIIYTQLKEGVHFNCISFAYPGHEKLVLRDVDLFLPRGTTLALVGGSGAGKSTVADLLPRFYDPIAGSIHLDGTDLRKFDITSVRKRMGIVSQDTFLFNNSVKNNIAYGRPEATEDEIISAAKRANAYEFISKLPQGFETLIGDRGVMLSGGQRQRLAIARALLQNPEILILDEATSALDTVSERLVQEALDDLSRDRTTLVIAHRLSTVQKADQIAVLDQGRVVEVGTHVELLQKGGYYSRLYTMQFGDRPDDSAQQHQSLTRISHEIRTRLNSMIGVLGLLIDDLIDNSQEQQELIEESYKSALRIITTIDIFQDILKMQIQERFLSSTEANQNLNHRYQRFNLMFSEFRDCLNISLNNLRSLSETAIYTPEEQHQLITNAYNSAIELIDKLEKFEDKI
>NC_019676.1|WP_015114450.1|4282112_4283279_+|glycosyltransferase-family-4-protein
MKDKPKISILVWNLSTNDGFIRASLLEKALHKLDCEVEIIGFLFDKELYRAIPSEAQLKTVEGGNYPGFFKSINKILKLIDGDIIYAIKPQVASFGIALIKKLSNKKPVIVDIDDWELSWYGGDAWQYKPSLKQLAKDILKKDGVLRIPHHPLYIKWMENLIKHADAITTHTSFLQKRFGGISVPNGKDTALFDPAKYQPEESRNRYGLSEYRILMFPGAPRPYKGLEDVLIALDKLNQPDLKLVIVGGSPYDNYDEELRQKWGQWIIKLPNYPADVMPDVVAAAHVIVVPQRDTPETRAQFPLKLTDGMSMAKPVLSTKVGDIPEILGDTGYLVEPSCPEQIAEQIQLIFQDLDAANERGRKSRERCVEKYSIEAMAATLKSVIARL
>NC_019676.1|WP_015114449.1|4281246_4282086_+|hypothetical-protein
MKETRGFITILTGLYSFQDCIHFLAAIRKFHHEPIIVLIDQVPPILYPFLKAFKNVILKPAPKQENPVLASRLAKVSLYNASEFDKTIFLDSDICLLTNINDVFESLDEFDLLLTEDVQPDISKATNLLRGSQQENLDKVLQTLQSVGFPLQENDIQYNSGLIAFRKTEETKKLFSEFQRYFEIITEHQDKLLLRDQGAFATAIATVKPKMKVLPPTYNFLSKWKDTYKIDQEIKVLHCTYPYRPQYAKNITRSLYTRIFDKLAHFFLPDQVTNPWRQK
>NC_019676.1|WP_015114448.1|4280674_4280902_+|hypothetical-protein
MSDRPSIYISVDSQSEIAIKKIVDKIISSGKLSRQDHALLLSQVFADDLINDRVRRQLNRILDQIQTGQLKLIDW
>NC_019676.1|WP_015114458.1|4293171_4297299_+|replicative-DNA-helicase
MAEELNFQGDGSDRLPPQNIEAEEAILGGILLDPEAIGRVSDRLVAEAFYISAHREIYQAALRLHAQGKPTDLLSITSWLTDNDLLARIGGRNKLATLVDRTVSAVNIDALAGLVMEKYLRRQLIKAGNEIVHLGYETETELPLVLDKAEQKVFGVTQERPQSGLVHISDTLVNTFQDIETRHQGIALPGIPCGFYDLDAMTSGFQRSDLIIVAGRPSMGKCLSFDSEIVLADGKITTIEQLYKQRQGSLLTLNDNWKFSFTQPSAFVDDGIKPVFRVTTRLGRTIETTITHPYLTIKGWQRLENLQVGERIAVPRKIDVFGTKTLRECEVKLLAYLIGDGGLTNSNPRFTNSNPLLQTEFSQAVADFGGLAVRWETSQEQCTPSLCVRGDLEFIASQRQLFAQRLKTLVQSQSLTARQLSCELDVSPSLLTIWQQGQCVPNANKFKKLCTLLKTEAEEFAPYGFTSISKTSRNSLTVWLEKLGLWGKDAHTKTVPTIVFQLERSQIAMFLNRLFATDGWATLLTSGQSQLGYCSVSEKLARQIQHLLLRFGIIARLKKRLVKYQDTRRQAWQLDITDAQSIKTFISEIGIVGKEAALEKVAEAISQKRYQTNCDLIPVEIWEQIAIAKGNESWASLAKRAGIQNYTNMRVGKRALKRERLWNLATALENLQLQQLATSDIYWDEIVAIELVGFKQVYDLTISKTHNFVANDICVHNTAFCLNLAHNIAAGYKLPVAVFSLEMSKEQLVQRLLASEAGIESGYLRSGRISQTQWEPLSRAIGMLSEMPIYIDDTPNMTVNEMRSQARRLQAEQGADLGLIVIDYLQLMEGAGDNRVQELSRITRSLKGLARELSVPVIALSQLSRGVEARTNKRPMLSDLRESGCLTGDTLITLADSGLQVPIKELVGKSGFAIWALNESTMQLEKANVSHTFSTGIKPVFTLTTRLGRKIRATVNHKFLTINGWKRLDELNLKQHLCLPRHIPSSGKPTMTYTEVALLGHLIGDGCTLPRHAIQYTTREIDLAENVAFLAREVFGDSIIPRISPERDWYQVYLSATKRLTHSVRNPIAKWLDSLGIFGLRSYEKFVPQELFSQPQELIACFLRHLWSTDGCIKLVAGKRPRPIAYYASSSERLAFDVQTLLLRLGINAKLKIIPQIGKGRNQYHVTITGKPDLELFIQKVRAVGEYKLGSLQQIAQHLENSIHNPNRDVIPKDVWKTLVIPAMPSVSLTTRLLHSSLGTSYCGSTLYKANLSRERALKVAKLVQSNELLSLANSDVYWDEIVSIELSGEEEVFDLTVPGLHNFVANNIIVHNSIEQDADLVIMLYRDEYYSPDTPDRGIAEVIVAKHRNGPTGTVKLLFDPQYTKFKNLARPNY
>NC_019676.1|WP_015114459.1|4297352_4297874_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKAILLSVGVMLVCVVVLVLGQLGNKQDTAIAANLTQSQSSPTTITKNDTLIANNTMSDKNVVTTSSGLKYVEIKEGTGTTPQSGQTVVVHYTGTLEDGTQFDSSRDRGRPFSFQIGVGQVIKGWDEGLSTMKVGGQRELIIPADLGYGSRGAGGVIPPNATLIFDVELLDVK
>NC_019676.1|WP_015114460.1|4297953_4298277_-|phasin-family-protein
MDSNNWLQQLMMVGIGTTSLVAEKLREVSDELVKDGKLNPEQAKAVMDDIVEQLKSEQGNWDVQMQRQMRNMMQDLGVARQSEVDELRGRIDRLERQVRDLENKLWR
>NC_019676.1|WP_044500942.1|4298412_4298721_+|TIGR03792-family-protein
MVIELLKFQVDPNRRESFIQQDAEIWTTALAKYPGFLSKEVWINPHNLSEVTFIIRWATREQWKAIFEADLAVIDSKFAQALGDTYQLIESAEYQVRKFPHT
>NC_019676.1|WP_015114462.1|4298760_4299420_-|DUF2834-domain-containing-protein
MLRQVSLFSLWVVFVVYAFFLAPPDQPDTFELIKKLSIGQWQEINPLIISLFNLMGVWPLAYSALAFTDGRNQKIPAWPFATGSFGVGAFALLPYLFLRTPNQEFVGKKSIFIKFLDSRVTGIILTVIASILVAYGVRGGDWQDFIQQWQTSRFIHVMSLDFCLLSLLFPVLLRDDMARRGWKNPQLFWLISLIPLFGPLIYLCVRPALPEADTIGVTK
>NC_019676.1|WP_015114463.1|4299441_4300122_-|tetratricopeptide-repeat-protein
MIKAVGLLMTGFWLFMVYDCIRNEPEKRLWLWILIVVNFPGAIAYFSTRWIARKNIPLPNYSSHCTHSHKIWTAESQVRSIREIHIDDFGSFDQAEAADNLQTLWNEVFIDIKNQQYASAKQYLQSLLKIDPDYQYGDASLIYGEILFALEEFTAAKQHLENHIQHWNHPQAYITLAQILSQQGDIETARHYLEIIIVKIKESSYYHYKRRQTISKAEKLLRTLKC
>NC_019676.1|WP_015114464.1|4300316_4301414_-|heat-inducible-transcriptional-repressor-HrcA
MEVQLTNRQQHILWATVRHYIATAEPVGSKVLVEEYDLGVSSATIRNVMGVLEKSGLLYQPHTSAGRIPSDSGYRIYVDQLIAPSLRDTTRTETLAKEVELSLQQRLQWEDWSLEALIHGAAQILATLSGCISLITMPQTSTALVRHLQLLQIEAGRIMLILVTDGYETHSKVMDLPPVKEDSQVDSEVIDRGLQIVSNFLNSQLRGRSLLEIANLDWSQLDQEFQRYGEFLKSAIAELSRRTQTPNTTQIMVRGVAEVLRQPEFSQLQQVKTIMQLLEEEQDKLWQLICDEPEIEDTSKSRVTVRIGAENPLEPIRTCSLISSTYRRGSVPIGSVGVLGPTRLDYESAIAVVTAAADYLSEAFS
>NC_019676.1|WP_015114465.1|4301773_4302133_-|rhodanese-like-protein
MTDKSFDQPMTQISVEELAERLAAGDANIQFVDVREPQESAIASIENFINLPLSEFTDWNQKIFAMLNPEAETLVLCHHGIRSAQMCQWLVAQGFTNVKNISGGIAAYSQLVDPTIPQY
>NC_019676.1|WP_172641491.1|4302348_4303980_+|DUF3352-domain-containing-protein
MNRQSSFFGLIAAGAIALILIAIAAFWFLTKSPVNLVASTSQPGAAIFVSKLSPVMVSLLTNPDRLQALERNGEISQIKTSLLAKSGIDYQKDIQPWLDNEITLAVTTTDIDRDSVNGQQPGYLMAVATNKQDKSREFVELLFSKRVLAGANLDTEEYQGVKVLYDSQLAAAVVGDGFVLFANDPSVVKDAINNVQAPDLNLTSSPQYQKATQQLPTASLAVAFLNFPIIAQWQGLELPEPTYDSEIISLGLNSKGLLAETSFLSGLELTPPSSPLAKPVGALKYIPASAGLAISGANLSNLGDSDLAKFWTQMKIAISGSGTDVISRLVQPLTEVRKTWGINFSQDIFSWVKGEYAIALLPRTGQILPDWVFVVEKVESVPEGIAKLDAIASSSGLSSSNLSLDKQKISAWTQLTAKQTPAKDRPLFTIEAQAQGIHTTLDNYEIFTSDLATMDEVLTNQEKSLIGDRNFQNSVAAIPQPNQGYVYIDWAKSQRILERQIPVLKLIEVLGKPFFNSLRSLTISSYGSETNALKGGVFLQLQE
>NC_019676.1|WP_015114467.1|4304099_4304591_+|hypothetical-protein
MKDCRPRLYKRIGWVLAILAAVTAAPAIAETANFGKFSLLPGFEPAQGKFSGYTGGSFSLPAISNRDRDKKACLGFADPKPDYTMVLEKDFDQLTILVNTGNTDTTLLIKGPNDDTIRCGDDTGRSKDASISDRNWKKGIYQIWVGTFNSDAKHKYTLTVQQK

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Crispr_ID: NC_019676_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_20

4563956-4567063

Orphan

I-D,II-B

Consensus_repeat	Method
ATTG----------CAATTCAAACTAATCCCTATTAGGGATTGAAAC	PILER-CR
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CRT

42 spacers

The CRISPR arrays of NC_019676_20

>merge|NC_019676|20|4563956-4567063|PILER-CR,CRISPRCasFinder,CRT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGAATTTAAATCGCCGCTACCATTAGCAAAAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTATTAACAGTAATAATATTAAAACTAGTTTTAGCATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGATATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACCTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCTATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTACATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAGGGCAAAGTCACCAAACCGAACGGTGGTGAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTGGAACATCGCCGTATTAAACCCAACCCAGCTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTGTTGCAGAGATGAATAACAAATTCTCTGCCAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATCGGATCTACTTATCAGCAAAAGCAGCAAAATAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTCGGATAGCACAGCATTGCAGTTCATAAGTACCAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTGCTGCATCGCTGGGCATTGTATTTATAATAAACTTATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTACCAGTACATGAGCGTCCCCGGTGGATTGAGAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAGAATATCGACCATTGCCCGACCAGTCAAAATGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGATATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGCTTACCTGTAAAAGTAAAATATTTAGGACAAGCATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTACCGTAAACAATATACCATAGCGTGCAACACAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTTTCACCTTGAAAATAAGACACTTTTGCAGCATATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACCATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGATACTATCATATCTAACTCTTTAGACGTTAAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTCATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAATTACGGATACGAGCGTATTCGCAAATTAGAGAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATTGACCAAGCAAACAGGCGATCGCCACCTCAATATATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACGAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTTATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATTTCATATTTAGTAATGCCTCCAGTATCTACTCTATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTGATTTGCGATCGCATTCACAAGTGGCCTGCATATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTTATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACCTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAGCTATAAATATCGCGTATGACATAGACGCTGAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACATAAACAGGTACTTATAAAGCTTTCCGATGATTAAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAGATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACAATGCGAATTATGAAGACTATCACGAACTCAGACATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACTTTCTAATGATGAATTTTCTAAATTGCGTAAACACATTAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACCGGTATATACAGTGTCGCCAACCTTGCATTGAAACTGGTATTGCAATTCAAACTAATCCCTATTAGGGATTCAATA

>NC_019676|20|12|4563956-4566910|PILER-CR
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAATTTAAATCGCCGCTACCATTAGCAAAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATTAACAGTAATAATATTAAAACTAGTTTTAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGGCAAAGTCACCAAACCGAACGGTGGTGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGGAACATCGCCGTATTAAACCCAACCCAGCTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGCAGAGATGAATAACAAATTCTCTGCCAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCGGATCTACTTATCAGCAAAAGCAGCAAAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTCGGATAGCACAGCATTGCAGTTCATAAGTACCAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGCTGCATCGCTGGGCATTGTATTTATAATAAACTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCAGTACATGAGCGTCCCCGGTGGATTGAGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGAATATCGACCATTGCCCGACCAGTCAAAATG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GCTTACCTGTAAAAGTAAAATATTTAGGACAAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCGTAAACAATATACCATAGCGTGCAACACAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTTCACCTTGAAAATAAGACACTTTTGCAGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGATACTATCATATCTAACTCTTTAGACGTTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATTACGGATACGAGCGTATTCGCAAATTAGAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTGACCAAGCAAACAGGCGATCGCCACCTCAATAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTCATATTTAGTAATGCCTCCAGTATCTACTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGATTTGCGATCGCATTCACAAGTGGCCTGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTATAAATATCGCGTATGACATAGACGCTGAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAAACAGGTACTTATAAAGCTTTCCGATGATTAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATGCGAATTATGAAGACTATCACGAACTCAGAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC

>NC_019676|20|19|4563956-4567063|CRISPRCasFinder
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAATTTAAATCGCCGCTACCATTAGCAAAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATTAACAGTAATAATATTAAAACTAGTTTTAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGGCAAAGTCACCAAACCGAACGGTGGTGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGGAACATCGCCGTATTAAACCCAACCCAGCTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGCAGAGATGAATAACAAATTCTCTGCCAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCGGATCTACTTATCAGCAAAAGCAGCAAAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTCGGATAGCACAGCATTGCAGTTCATAAGTACCAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGCTGCATCGCTGGGCATTGTATTTATAATAAACTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCAGTACATGAGCGTCCCCGGTGGATTGAGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGAATATCGACCATTGCCCGACCAGTCAAAATG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GCTTACCTGTAAAAGTAAAATATTTAGGACAAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCGTAAACAATATACCATAGCGTGCAACACAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTTCACCTTGAAAATAAGACACTTTTGCAGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGATACTATCATATCTAACTCTTTAGACGTTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATTACGGATACGAGCGTATTCGCAAATTAGAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTGACCAAGCAAACAGGCGATCGCCACCTCAATAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTCATATTTAGTAATGCCTCCAGTATCTACTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGATTTGCGATCGCATTCACAAGTGGCCTGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTATAAATATCGCGTATGACATAGACGCTGAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAAACAGGTACTTATAAAGCTTTCCGATGATTAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATGCGAATTATGAAGACTATCACGAACTCAGAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTCTAATGATGAATTTTCTAAATTGCGTAAACACATTAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CGGTATATACAGTGTCGCCAACCTTGCATTGAAACTGGT
ATTGCAATTCAAACTAATCCCTATTAGGGATTCAATA

>NC_019676|20|12|4563956-4567063|CRT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGAATTTAAATCGCCGCTACCATTAGCAAAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATTAACAGTAATAATATTAAAACTAGTTTTAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGGCAAAGTCACCAAACCGAACGGTGGTGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGGAACATCGCCGTATTAAACCCAACCCAGCTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGCAGAGATGAATAACAAATTCTCTGCCAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCGGATCTACTTATCAGCAAAAGCAGCAAAATAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTCGGATAGCACAGCATTGCAGTTCATAAGTACCAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TGCTGCATCGCTGGGCATTGTATTTATAATAAACTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCAGTACATGAGCGTCCCCGGTGGATTGAGAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGAATATCGACCATTGCCCGACCAGTCAAAATG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GCTTACCTGTAAAAGTAAAATATTTAGGACAAGC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TACCGTAAACAATATACCATAGCGTGCAACACAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTTCACCTTGAAAATAAGACACTTTTGCAGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGATACTATCATATCTAACTCTTTAGACGTTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATTACGGATACGAGCGTATTCGCAAATTAGAGA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTGACCAAGCAAACAGGCGATCGCCACCTCAATAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	GAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATTTCATATTTAGTAATGCCTCCAGTATCTACTCT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTGATTTGCGATCGCATTCACAAGTGGCCTGCAT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTT
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AGCTATAAATATCGCGTATGACATAGACGCTGAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ATAAACAGGTACTTATAAAGCTTTCCGATGATTAAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	ACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAG
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	AATGCGAATTATGAAGACTATCACGAACTCAGAC
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	TTTCTAATGATGAATTTTCTAAATTGCGTAAACACATTAA
ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC	CGGTATATACAGTGTCGCCAACCTTGCATTGAAACTGGT
ATTGCAATTCAAACTAATCCCTATTAGGGATTCAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015114654.1\|4555014_4555749_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019676.1\|WP_015114667.1\|4572821_4573379_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019676.1\|WP_015114653.1\|4554436_4554676_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114659.1\|4560062_4561298_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
NC_019676.1\|WP_044500994.1\|4570142_4570427_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114662.1\|4567359_4568613_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235729
NC_019676.1\|WP_015114669.1\|4573749_4573986_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114658.1\|4559030_4559540_+\|allophycocyanin-subunit-beta	unknown	unknown	gnl\|CDD\|271281
NC_019676.1\|WP_015114656.1\|4556974_4557175_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114672.1\|4576028_4577156_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226749
NC_019676.1\|WP_044500164.1\|4573439_4573712_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114661.1\|4562315_4563707_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_019676.1\|WP_044500162.1\|4561419_4562139_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019676.1\|WP_015114666.1\|4570906_4572556_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019676.1\|WP_015114663.1\|4568798_4570052_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_019676.1\|WP_083889727.1\|4559764_4559938_+\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_019676.1\|WP_015114655.1\|4555784_4556684_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_019676.1\|WP_015114657.1\|4557256_4558672_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_019676.1\|WP_015114670.1\|4575084_4575357_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015114665.1\|4570423_4570798_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015114654.1\|4555014_4555749_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	0.000794784
NC_019676.1\|WP_015114667.1\|4572821_4573379_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.34726e-26
NC_019676.1\|WP_015114663.1\|4568798_4570052_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	6.38725e-169
NC_019676.1\|WP_015114659.1\|4560062_4561298_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NC_019676.1\|WP_015114662.1\|4567359_4568613_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|235729	PRK06185, PRK06185, FAD-dependent oxidoreductase.	0
NC_019676.1\|WP_015114658.1\|4559030_4559540_+\|allophycocyanin-subunit-beta	gnl\|CDD\|271281	cd12126, APC_beta, Allophycocyanin beta subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	4.07126e-102
NC_019676.1\|WP_015114672.1\|4576028_4577156_+\|acyltransferase-family-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	9.32044e-166
NC_019676.1\|WP_015114661.1\|4562315_4563707_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.80422e-08
NC_019676.1\|WP_044500162.1\|4561419_4562139_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.68457e-10
NC_019676.1\|WP_015114666.1\|4570906_4572556_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.97186e-60
NC_019676.1\|WP_083889727.1\|4559764_4559938_+\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	1.45597e-17
NC_019676.1\|WP_015114655.1\|4555784_4556684_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.48061e-08
NC_019676.1\|WP_015114657.1\|4557256_4558672_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0

>NC_019676.1|WP_015114661.1|4562315_4563707_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPKTIHSTQPPLKFIPQNFNPLALQMMRWLLPFILRFRTRPWLTAGVVKIEAENAEILAELYQKFQAGKIRFLIAFRHPEVEDPLCMLYLLSRLVPKAARQHGIKLQEPIHSHFIYERGMTLWAGNWLGWLFSRVGGVPVRRGRRVDRLAIQTARDLFANGKMPIAVAPEGGTNGHSGIVSPLEPGVAQLGFWCVDDLQKSDRTETVFIVPVAIQYRYVQPPWTKLNWLLSKLEADSGLAVQSISQSAINNSAEIYHQRICRLGEHLITEMEEFYRHFYHQDLPQIPNQTLIPRLHRLLDTSLKVAEQYFNIQAQGNFIDRCRRLEDAGWNYIYREDIADIHKLPPLKRGLADWIAEEADLRMQHMRIVESFVAITETYLQEQPTSERFAETALLMYDMLTRIKDSTLPGRPSLGLRQVQISVGEPISVTERWKKAQNNRHAARQAASTLTQDLQTALENLIS
>NC_019676.1|WP_044500162.1|4561419_4562139_-|class-I-SAM-dependent-methyltransferase
MSKQSPSFPFNSNNPHSDKWQERTSQVAYRFNRQYQNQTFELPPEVQSMPIYQEWKAGILAGRAVSPFWEIAQPQKNQHCLDIGCGVSFLIYPWRDWQAFFYGQEISNIARDTLNSRGSQLNSKLFKGVELGGAHHLNYGLDQFDLAIATGFSCYFPLEYWNTVLGEVQRVLKSGGHFVFDILNPQQPLSEDWAVLETYLGAEVFLEPLTEWEKMIKAAGAKVVAQQSGELFELYKVRF
>NC_019676.1|WP_015114659.1|4560062_4561298_+|LL-diaminopimelate-aminotransferase
MATINDNYLKLKAGYLFPEIARRVNAFAEANPDAKIIRLGIGDVTEPLPEACRTAMIKAVEEMGDRTTFKGYGPEQGYAWLREKIAAHDFHARGAEVDADEIFISDGSKCDTGNILDIFGNNNIIAVTDPVYPVYVDTNVMAGHTGVANDKGEFAGLVYLPVTAENNFTAEIPREKVDLIYLCFPNNPTGATATKEYLQAWVDYAKANGSIIFFDAAYEAYITDPSLPHSIYEIEGARDCAIEFRSFSKNAGFTGTRCALTVVPKTLKAKAADGSDVELWKLWNRRQSTKFNGVSYIVQRGAEAVYFEDGQAQTKALVSFYLENAKIIREKLIAAGLAVYGGVNAPYVWVKTPNSLSSWDFFDKLLHTCNVVGTPGSGFGAAGEGYFRISAFNNRENVEEAMKRITEKFKV
>NC_019676.1|WP_083889727.1|4559764_4559938_+|XisI-protein
MNKLTRYREIIRQLIFEYDGTSEPVAEALLAAGIPHEDIVLGFHPAKLRQYTDFAIS
>NC_019676.1|WP_015114658.1|4559030_4559540_+|allophycocyanin-subunit-beta
MRDAVTSLIKNYDVTGRYFDRNAIDSLKSYFDSGTARVQAAAAINSNAASIVKQAGSKLFEELPELIRPGGNAYTTRRYAACLRDMDYYLRYATYALVAGNTNVLDERVLQGLRETYNSLGVPIGPTVRGVQLMKDMVKEQVAAAGVANTAFVDEPFDHITRELSEQDV
>NC_019676.1|WP_015114657.1|4557256_4558672_-|type-I-glutamate--ammonia-ligase
MTTPQEVLKLIQDQNIQMIDLKFIDTPGTWQHLTVYQNQIDESSFSDGVPFDGSSIRGWKGIEESDMTMVLDPNTAWIDPFMAEPTLSIICSIKEPRTGEWYNRCPRVIAQKAVDYLVSTGIGDTTFFGPEAEFFIFDDVRFDQTANSGYYYVDSVEGRWNSGRQEGPNLGYKPRFKEGYFPVSPTDSFQDIRTEMLLTMAKCGVPIEKQHHEVATGGQCELGFRFGKLIEAGDWLMTYKYVIKNVAKKYGKTVTFMPKPIFGDNGSGMHCHQSIWKDGKPLFAGDKYAGLSEMALHYIGGILKHAPALLAITNPTTNSYKRLVPGYEAPVNLAYSQGNRSASVRIPLSGTNPKAKRLEFRCPDATSNPYLAFAAMLCAGLDGIKNKIDPGEPLDKNIYELSPEELAKVPSTPGSLDKALAALENDHAFLTETGVFTEDFIQNWIDYKLANEVEQMQLRPHPYEFYLYYDC
>NC_019676.1|WP_015114656.1|4556974_4557175_+|hypothetical-protein
MSIQEKSRALMVRQHQQVKNRQQSMLMRAAQELGLPEEASHYWNPIQGKIDQTARTIYGSSNASMS
>NC_019676.1|WP_015114655.1|4555784_4556684_-|ferritin-like-domain-containing-protein
MTVTYPRKFQNSLGARDILKRVVSDRELHLMTLNRYRYSEQRSCKDLTEVIEKLNGQPRELVRDLSHHIADEARHAMWLTDLLIELGATVGNPPGMPYIDEFEWLLDKNTHDPKTNLDDTIIAGMAAINITEKRGCEYFSAHIYALKQAPQTEENIKIRETIEKILPEEAGHVRWGNRWLGKIADKSPEHRQKVEQAKLKYAAIEQAAYESGMDITLGAELRRVTRLVDVANTMPLWERPQYLMERLPQALLAPELQFTRIQAAQKAWQRNPQEFMEKFVPMFINGIKKSEIEKEKTSI
>NC_019676.1|WP_015114654.1|4555014_4555749_+|Uma2-family-endonuclease
MATQLSEAKSPAEMVISWQALPDDYQLEDEPVENTNQPLLAGALRESLEISGFIQPQMLIASNFGLCATVNGQLILKAPDWVYVPAVNQVLSDRKSYTPNLEGEVPAIVMEFLSDREGGEYSVKRTYPPGRWFFYEQILQVPIYIIFEPDGGLLEFYQLENKRYELQLPDENGRHFVASMNLFLGTWQGTKEARTGYWLRWWDTQGNLLPWAVEQIEQERQQKEGLMAYLVSQGIDPNNLPPLE
>NC_019676.1|WP_015114653.1|4554436_4554676_+|hypothetical-protein
MRVTFSLLVSGLVFGSLVFNGSDKFNRSHTLIGDAGGKMLLSAKPKPKPKSNEPENPTPHRGSGRRDLIESLNNAFPVA
>NC_019676.1|WP_015114662.1|4567359_4568613_-|FAD-dependent-oxidoreductase
MTNHLPTNPIPDSSVNPAHEIVDSQTTDCCIVGGGPGGAVLALLLARQGISVMLLEAHKDFDRDFRGDTIHPSVMQIMDELSLSDRLLQLPHTKIRQINVKTPEGSFTLADFSHLKTPYPYITMLPQVKFLEFITQEAQQYRHFQLVMGANVQELIEEDGTVKGVRYRGGGGWHEVRAMLTVGADGRHSRLRQMGGFESIETSPPMDILWFRLPRHPEDFEGGMGRFAPGHIVAMLDRGDEWQIAYVIPKGGYHQLRAAGLEELKKSVVEVMPELSDRLSSVQDWSQVAFLSVESSRVKRWYRSGLLLIGDAAHIMSPVGGVGINYAIQDAVVAANVLSKPLQRKHIELNDLAKVQRQRGLPTRIIQAFQTLIQKRVFAPVLSTNGTFQPPGFLRLPFLRDLPARLIALGVFPVHVK
>NC_019676.1|WP_015114663.1|4568798_4570052_+|ABC-transporter-ATP-binding-protein
MAQVILENVYKSFPPRKGESNAAQERADNLNVLRRINLTIADGEFMVLVGPSGCGKSTLLRLIAGLETLTGGNILVGDRLINDLPPKERDIAMVFQNYALYPHMTVYDNIAFGLRRREQGSRGEKMPNWAENLLVGGTKKLPKGLRYVSPKERLIETQVRSVAQLLQIEMLLNRLPKQLSGGQRQRVALGRAIARDPQVFLMDEPLSNLDAKLRAETRAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQLASPLELYNRPANRFVAEFIGSPPMNFIPVEFHAPLLITHSLFRFTLPETWGKALQKYDKQTLILGIRPEHLNLSLPATKNLPVKVDLVENLGNDAFLSVRLTEPDSPVASSAPYLQVRVPTDRQLSVGEQLWLSINPEKIHFFDPETDLAIFSTNNS
>NC_019676.1|WP_044500994.1|4570142_4570427_+|hypothetical-protein
MLQQHKFNIKTAVDIEWRVLVGGGGLHADCEEKLLDDGSRQQVIWAASFMPLTQKIIYDSMVNLRPRQNRSMEILDPNIRERVAQIIVEFLGNL
>NC_019676.1|WP_015114665.1|4570423_4570798_+|hypothetical-protein
MIEVTPKQQIFMQDDIPTRLHHVATHLSQIQSLWTQASSSDLILVLVDEIRYFIEWTVPDMVKADDIDRAAELVDLVRLLTRWLFHWDNIWSDSEQKQFAFQQIQDWLHRVLEIAATEPESLSA
>NC_019676.1|WP_015114666.1|4570906_4572556_-|iron-uptake-porin
MSHLLWKTLVLSPVCLGVAVLFSAKVVAAEIETESPTPQQQLISQAKTEENQVLEQVNQYSLDGKNQNSLSQVTSVSQFSDVQPTDWAFQALQSLVERYGCIAGYPNGTYRGNRALTRYEFAAGLNACLDRVNELIATATADLVTKQDLATLQRLQEEFSAELATLRGRVDALEARTAELEANQFSTTTKLVGEAVFAVTDSFGDNDNNNTVFQDRVRLDFQTSFTGKDILHTRIATGNASVLPLANDTYEGTQTFNVFLGSNNSAFIDWLAYYFPVGNSQIYVAATGGIHSDYVPTVNPYFEDFDGGNGALSTFASESPIYRIGGGAGAALNLAFGGSGTFKPSLTLGYLASEPNNPNSGSGLFNGNYAALAQLNLNVGDRLTLAATYVNGYHGAGSALFDFGSVSTGVVGTRQANRQDFDGSGSAFVSNSYGFEAAFKPSDKLSISGFVLYSQVTGFGANDDDDIWSYGLGVALPDLGKKGNVLGIFGGAQPYAGSGNNNTPYHIEGFYKYRVSDNISITPGVIWLTNPGQTSDDAIIGTLRTTFVF
>NC_019676.1|WP_015114667.1|4572821_4573379_+|Uma2-family-endonuclease
MTQIKSQLTLKEFLALPEGDITYELVNGEAKPKMAPKRFHSRLTLALTQLLTPWAKNRGEVGVEWAVTLKRQSRDWVPVPDLLYVSYSRLTRDVIEDEACPIPPDLAIEIISPDQTFGEMSAKATDYLEAGVLRVWVVDAKAKTVTVFYPDAHPQTKAGEDSLEDSLFEALQITPAQIFQQAGIP
>NC_019676.1|WP_044500164.1|4573439_4573712_-|hypothetical-protein
MSHWLGIALVAYLIGAAIEGISTASQLSHSLPEITKDMQSQPSESANQLEEKWRVLAAISSVSICGACIWPCRLLHRLIKKKVLSENSSD
>NC_019676.1|WP_015114669.1|4573749_4573986_-|hypothetical-protein
MITTKMMQQLWAVIESTNVSTLLQFDDVALVQLLFQQLNTHQEDDIQGDSHLNAYIQSKLPLIRDTAEGRLSFGTDNH
>NC_019676.1|WP_015114670.1|4575084_4575357_+|hypothetical-protein
MSRDIVKVILWEEKQKDYLKKLYDLPFIPRIGEEIYINKENWKVTKIEHDVEVSEINIYMELVKKAKQEKSSEKSSERSSERSSEKSFNS
>NC_019676.1|WP_015114672.1|4576028_4577156_+|acyltransferase-family-protein
MRLTSLDVFRGITIAAMILVNMAGVADDVYPLLAHADWHGCTPTDLVFPFFLFIVGVAMTFSLSKYTADNKPTSTVYLRIFRRAAILFALGLLLNVFWNKGVGTFDFSSIRIMGVLQRISLSYLLASLAVLNLPRKGQWILAAVLLIGYWLTMMYVPVPEYGAGVLTREGNFGAYFDRLIIPQTHLYAGDGFKSMGDPEGLFSTIPAVVSVLAGYFTGQWIRKQPVQTRTSVGLILFGMGCLIIGWAWGWVFPINKKLWTSSYVIFTSGWALLLLAACYELIEVRLIKRWSKPFEIMGLNAIALFVASVLLIKILAKTKIGTGETVLSTYNWIYQNIFASWAGTFNGSLLFALVTVLLWWAVAILMYRQRWFLKV

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Crispr_ID: NC_019676_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_21

5102610-5102685

Orphan

Consensus_repeat	Method
GTCAATCAATTTTGGATTTTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_21

>merge|NC_019676|21|5102610-5102685|CRISPRCasFinder
GTCAATCAATTTTGGATTTTAGATTGACCCCATACCTAAACTCAGGGGAACCTGTCAATCAATTTTGGATTTTAGA

>NC_019676|21|20|5102610-5102685|CRISPRCasFinder
GTCAATCAATTTTGGATTTTAGA	TTGACCCCATACCTAAACTCAGGGGAACCT
GTCAATCAATTTTGGATTTTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115109.1\|5103875_5104217_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_019676.1\|WP_015115104.1\|5097149_5098259_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_019676.1\|WP_015115105.1\|5099360_5101652_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_019676.1\|WP_015115102.1\|5094213_5094681_+\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|225833
NC_019676.1\|WP_157374270.1\|5087177_5089121_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115108.1\|5103588_5103879_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_019676.1\|WP_015115111.1\|5108188_5109109_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|179455
NC_019676.1\|WP_015115099.1\|5090845_5091445_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019676.1\|WP_015115103.1\|5094743_5096351_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NC_019676.1\|WP_015115106.1\|5101801_5102371_-\|retroviral-like-aspartic-protease-family-protein	unknown	unknown	gnl\|CDD\|379408
NC_019676.1\|WP_015115100.1\|5091729_5092902_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_019676.1\|WP_015115115.1\|5112658_5113795_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|237591
NC_019676.1\|WP_015115113.1\|5110413_5110989_-\|NAD(P)H-quinone-oxidoreductase-subunit-I	unknown	unknown	gnl\|CDD\|129498
NC_019676.1\|WP_015115112.1\|5109582_5110182_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|214335
NC_019676.1\|WP_015115110.1\|5104521_5107980_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|368641
NC_019676.1\|WP_015115101.1\|5092996_5094139_+\|DUF1822-family-protein	unknown	unknown	gnl\|CDD\|370155
NC_019676.1\|WP_006199065.1\|5109115_5109421_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|176958
NC_019676.1\|WP_015115098.1\|5089645_5090257_-\|metal-binding-protein	unknown	unknown	gnl\|CDD\|370771
NC_019676.1\|WP_015115114.1\|5111078_5112197_-\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|214341
NC_019676.1\|WP_015115107.1\|5102761_5103544_-\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350167

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115109.1\|5103875_5104217_+\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	2.84997e-37
NC_019676.1\|WP_015115104.1\|5097149_5098259_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.87711e-67
NC_019676.1\|WP_015115105.1\|5099360_5101652_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.53334e-57
NC_019676.1\|WP_015115102.1\|5094213_5094681_+\|DUF4870-domain-containing-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	9.16657e-36
NC_019676.1\|WP_015115098.1\|5089645_5090257_-\|metal-binding-protein	gnl\|CDD\|370771	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227). Members of this family of hypothetical bacterial proteins possess metal binding properties; however, their exact function has not, as yet, been determined.	1.73361e-82
NC_019676.1\|WP_015115111.1\|5108188_5109109_-\|NAD(+)-kinase	gnl\|CDD\|179455	PRK02645, ppnK, NAD(+) kinase.	0
NC_019676.1\|WP_015115099.1\|5090845_5091445_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.61339e-36
NC_019676.1\|WP_015115103.1\|5094743_5096351_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	6.69454e-47
NC_019676.1\|WP_015115106.1\|5101801_5102371_-\|retroviral-like-aspartic-protease-family-protein	gnl\|CDD\|379408	pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl protease. This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins.	1.32175e-19
NC_019676.1\|WP_015115100.1\|5091729_5092902_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.99851e-09
NC_019676.1\|WP_015115115.1\|5112658_5113795_-\|citrate-synthase	gnl\|CDD\|237591	PRK14036, PRK14036, citrate synthase; Provisional.	0
NC_019676.1\|WP_015115113.1\|5110413_5110989_-\|NAD(P)H-quinone-oxidoreductase-subunit-I	gnl\|CDD\|129498	TIGR00403, NADPH-quinone_oxidoreductase_subunit_I, NADH-plastoquinone oxidoreductase subunit I protein. [Energy metabolism, Electron transport].	6.09597e-116
NC_019676.1\|WP_015115112.1\|5109582_5110182_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|214335	CHL00016, ndhG, NADH dehydrogenase subunit 6.	2.35973e-56
NC_019676.1\|WP_015115110.1\|5104521_5107980_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	7.26854e-16
NC_019676.1\|WP_015115101.1\|5092996_5094139_+\|DUF1822-family-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	5.69897e-119
NC_019676.1\|WP_006199065.1\|5109115_5109421_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|176958	CHL00015, ndhE, NADH dehydrogenase subunit 4L.	1.23222e-49
NC_019676.1\|WP_015115108.1\|5103588_5103879_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.25332e-24
NC_019676.1\|WP_015115114.1\|5111078_5112197_-\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|214341	CHL00032, ndhA, NADH dehydrogenase subunit 1.	0
NC_019676.1\|WP_015115107.1\|5102761_5103544_-\|nucleoside-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.5031e-90

>NC_019676.1|WP_015115106.1|5101801_5102371_-|retroviral-like-aspartic-protease-family-protein
MNCVWQRGITYINLALIAVMPTLIFSAFAHRVIAEDPSACFMVTSSGMTIELTKLCNEANRAKTTSEGRVFRVPIKRHFGRTPVIDVTFNNQKTFEMVVDTGANGTLITQAMANSLQIKPTGTLNAQTADGNQVQFPTGKIKSMAAGGIVANNVEVAIASKADIGLLGHDFFGNYDIKILQTAVEFHTR
>NC_019676.1|WP_015115105.1|5099360_5101652_+|response-regulator
MLRILLIDDNPHDRLLAINALEREFVDLKIQQIARPQEFEQALSVGEFDLVITDYELRWSNGIEVLRNIKSRYPEIPIVMFTNNGSQEIAVEAMKSGLDDYVIKSPSNYMRLPVAVRLALKQAVTRHQMTGLETRFQTLLNQLNVGVYRITADGIVLDANAAFLQLLGLDSLTEISFNQTWRSYFSTEDDAQLWQQLRIDAGVRERELLLHRPDGREIWVRISQTFTTNGDTTIIDGIIEDITERKYAEKALQESEARFRWIFESNVIGICFWNSDGNITAANDAYLQLVGYTRADMKTGGLHWTDISESEYNEQDLRIIEELKQFGISTPVEKCYIHKAGYRVPILIGCAFREGSQTDGFTFVVDLTERKQAEQEREQLLQREQTARQTAEAANRVKDEFLAILSHELRSPLNPILGWSKLLVTHKLSESKISEALATIERNAKLQAQLIEDLLDISQILRGKLSLNIASVNLQSVISAALETVQLAAQAKAIEIQTTLSANVGTVLGDPVRLQQVVWNLLSNAVKFTSSGGRVEVRLEQVGRQAQIQVIDTGQGISSEFLPFVFDYFRQADSQTTRRFGGLGLGLAIVKHLVELHGGAVWAASPGEGQGAIFNVRIPLIKNQTQLSQSPEQSDIYQELTGIRILVVDDEVDSREVVAFMLKECGAEVIAVPSAAEALSAFTQLQPDVLVFDIGMPDVDGYMLMRQIRSLPPEKGGQIPAIALTAYAGELNKQQALFAGFQLHSSKPIEPTELVNLITQLVK
>NC_019676.1|WP_015115104.1|5097149_5098259_+|Gfo/Idh/MocA-family-oxidoreductase
MNQNVVGVAVVGTGFGQKVHIPGFNAHPKTEVVAVYHRDINQAQIIANANNIPHAYNKITDIIKLPEVQAVSISTPPFLHYEMAKTVLEAGKHLFLEKPTALNAAEAKVLYNLAIANKVTAVVDFEFRFVPGWQLFAELLASGYVGNKRLIKIDWFGSSRADTSRPWNWYSSQEKGGGVLGSLGSHAFDYIYWLFGSVRRLSAYLSTAIPNRIDLSTGALKPVETDDNCLLSLELADGTPCQLNISAVVHAPRTHWVEVYGDRGTLVLGSENQKDYIHGFRVWGSQVGQPLAEIEIPQQLMFTQNFTDGRISAFIRVIDQWLQGIDQKQSIVPSLREGVYSQLLMDLSHQSHKTSSWVDVPSLDAYLEN
>NC_019676.1|WP_015115103.1|5094743_5096351_-|two-component-sensor-histidine-kinase
MYVPKKLRFTPSQIVAVTVLLTLLLFIPQIWLNWQAYYNFNHLTKNEFRLQKLSDEIIYLDEVLTMSARMNAATGNLMWEKRYRQFEEKLDNAIQASIKLAPQAYNSQDAKKIDVANQQLVKMEYQSFDLVKKNKQQAAQQLLSSHEYDTQKQIYADGVIKRKENISLALQQKVAKYRQKIFLAILASIISLLLLIPAWLLVLNLLREYLRAKKNAQVALEEINWILETKVAARTETLNQQNIQLEQTLQELKNTQVQLIQTEKMSSLGQLVAGVAHEINNPVNFIYGNLMYAKEYTQKLIDLIKLYQQEYSHNNSKITTVIKEIDLEFILEDLPKIVSSMTLGADRIREIVIILRNFSRLDEADMKPVDIHEGIDSTLLILQHQLKGKQEQKEIKIIKDYCSNSPLVECYAGGLNQVFMNIIGNAIDALHEKEVEDIKQAKERNTSCIIIQTQVRNAESLIISIKDNGSGISEEYKNRLFDPFFTTKPIGKGTGLGLSISYQIIVDKHHGKINCISSPGEGTEFVIEIPIRQIK
>NC_019676.1|WP_015115102.1|5094213_5094681_+|DUF4870-domain-containing-protein
MRKQVQKQMRTWAMLCHISALVAWLLLFGLVFLGIPLYLPLNILLPLVIWHLKKSKYPWIDFQGRESLNFQISLTLYTLIVIIFSLLLVLGSCGIAITTNGAVNEVKSVLDGLLLVWTFLIFGLLLLQSFFITFAAIKAYHGEHYRYPLTMRILR
>NC_019676.1|WP_015115101.1|5092996_5094139_+|DUF1822-family-protein
MTFTLTNSTDLILEIPEFRQRSQAFSHPSSAYQAYLNELCLNAVLPWLQEDFTPQAKVWPTTTALSSFWELVNGTAITVDATRFILVPSESIDLSELRVPQEWVDLPSWLGDYYLAVQVEPDAGYIRVWGYCTHAQLKHKGNYDAGDRTYSLDATEIITDMSVLAVAREFCTAEPTRSNVTAIPTLAQAQAQNLIDRLANAEVITPRLAIPFQLWGGLIEHSGWRQNLYEKRIGLPEQRSVLQWLQSGVSQLAETIGWERWNLELSAASRSVGDRQTEVNISRRLAIAGQFYELTITPQGEPDSLYWRFELRNAIVGAAIPGGFKIRLLTEDLQPFPNNEDIATTAVEQLYVEVALEPGEGIVWEVEPLPENYEREILKF
>NC_019676.1|WP_015115100.1|5091729_5092902_+|sigma-70-family-RNA-polymerase-sigma-factor
MQPRHSIIEIFSTFVQFDGDRFSRWATDSRLRRSIQCCIQQIPKENSEYFWVLYWYKFSQDSAAASSAKQHLTAYLQEPCYWTSQKTCTGFASSQFKLSDCFQIAIAQVERVLKGFNPSQGSTLKNYASLIFSTAIRETLRQRQEVDICSDWGLLRKTSQKRLEESLQNAGLSPETVRAYILAGNAFKTLYVPTKASNSRQLSRPDDSTWEAIAKFYNSQSSQPANPEILEKWLLSAAKAVRKYLYPTPDSLNVSKGGDDGFELLDNLPGMQESLINEIVAQEEAQARTQQQGEINQILTTAITQLEAQLQEILQLYYAQQLNQDAIAKQLDMKQYTVSRRLTKAKEVLLRSLANWCKDSLHISVTSDLLKSMSAVMEEWLENYYTASSH
>NC_019676.1|WP_015115099.1|5090845_5091445_-|Uma2-family-endonuclease
MIAAKENFPTLTPEEYFTWEEQQLEKHELINGQVYAMSGGSKNHSLLAARFITLCTNHLEESGCDTATSDLRVNIVGTNNYTYPDASVTCDVRDKTTTQHITYPCLIVEVLSTSTEAYDRGSKFRMYRQNPALIDYLLVSSTSIEIDLYHKNNAGDWLIINYKAGDTIELKSINLNFPIEQVYRGLTLEPKTPTDIIRE
>NC_019676.1|WP_015115098.1|5089645_5090257_-|metal-binding-protein
MPSGQTHDRITLWALPLVAGVSFWQTRSSSVTLLVASGFMFGGLMFGPDLDIYSRQYQRWGYLRWIWLPYQKSLRHRSFLSHGPIIGTTLRVIYLSVLLAITALIVLVIIEKLGNTTFNWQALGKNVARSLVGHSTEYLALFLGLELGAMSHSLSDWGGSAYKRMQKQGIHGLIPHKVKKRKVSNRISQPKPKLKPNNKKPKL
>NC_019676.1|WP_157374270.1|5087177_5089121_+|hypothetical-protein
MTFCDWYSTPIALASEYSETPAPISNEYNDAGYADNCDGIGYLPPYTHEQLTDAEKRGRCTWYLWTGGNAKYYREIAKRTHGGVDLLKLINSSLHDQRLKLFGAINDPGCEKATATDEYGLLLDKCKDPLSTGVIGLRKFPNPNFDRAKWDAKKYVKDVSIEPPYLIGQSCAICHVALDPLNPPKDKEHPQWENLVPALGNQYIKESALFSTNLKDDSFIKQVLMAQRPGTSDTSRIATDHINNPNAINAIFNLGDRPTYPEVMSDGSTKNVNHILKDGADSTGVATASLRVYVNIGMCGDYWLSLHEAMLGRTPQRPFDIEKARKDCEDWRQTEARMADAEAFLKTIQPMYLKDAAGGEAFLTKDEKVLERGKIVFADTCASCHSSKKPPAEIAANPDQAKKWYEESVSSSNFLDHNFLSDDQRYPATLIGTNISRALGTNATKGHIWDQFSSKTYKELPSPGELTLYNPFNEAKPINFPIPQGGLGYYRTPSLISVWATAPFLHNNTLGLYNEDPSVKGRIEAYTDAMEKMLWPEKREGIISRTDHKTKLDLPPGDPNPKLRLPVPKGTPVNLLANVNMREAITSLNLGNLFQDLRPEGGIKGKLARVLLRANKSPDFVEDRGHTFGANLSDDDKKALIEFVKTF
>NC_019676.1|WP_015115107.1|5102761_5103544_-|nucleoside-phosphorylase
MTNKRFYHIGFGQEDLGASPPTIALLSGDRDRAHFIAHNYLQDVRLLSQNRGLDSYLGYLPNNRPILSATSGMGAPSLSIVVNELVQVGIRQIIRIGTCGSIQPHIPVGSIVISSAALCRQGAATDIAPMEYPAAADPFLTVALVQAAQALEFEHYLGITASVDTFYEGQERTDSANPDLMRSLRGITEEYRRLNILNYEMECGTLFKMAGVYQFAAAAVCGVVAQRTVDEKVVLEQKEVAVKNAIATAIHTVMNYFPSL
>NC_019676.1|WP_015115108.1|5103588_5103879_+|nucleotidyltransferase-family-protein
MGIDEILKAYREEILQIAAKYGAYNVRVFGSVARGEAKADSDVDFLVELEPQRTLLDQIALMQSLEKLLGRKVDVTETETLHELIKDKVLREAVVL
>NC_019676.1|WP_015115109.1|5103875_5104217_+|DUF86-domain-containing-protein
MRDDKLYLSNILECIERIESYTDDGKEAFLQTKIIQDAVIRNFEIIGEATKRLSPEIKAAYPDIPWQQVAGFRDVLIHDYLKVNLNRVWGVIEQNLPQLKITVEAILQELREL
>NC_019676.1|WP_015115110.1|5104521_5107980_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MREKTIKITQSYYLSKLKLILALSSAIITTSANNVLAQNITIDGTLSPAQTLNGPIYIIPQLVGQTVGSNLFHSFGSFSLDSREIANFQSGSDIRNIFSRVTGGSPSFINGLIFTQSASVNLFFVNPSGIIFGPNARLDVGGSTRGSFVATTADALVWSNGSQFSATNPGGTSSLLTIVGDPSGFLSVQRPQSIFAIGSTLNVYQGQSLLLLGGDIGLFNSRLLVNGIEGGRIELGATAAESGTIELTTKNNILSLDFPQDSLRADVLLTNGSSLDVSAGNGGSIAINAKNIDILEQSNLAAGIAPGLGDVNSQAGDVTLNATGVIRVSDQSMIINYTDLFATGNAGNINIITDNLHLTNNAVITNRTFGQGNAGNLIIKANQSISLDNTSVIGNTVDVRAAGNGGDISITTSSLSLSNNSGVITFSSGRGNAGNLMINVNENISLDNARIASGIEAGAVGQGGDISISTGSLSLNNNAGIGAFFEDGNGNAGNITINARKDIFLDSQSSIESTTILAGNSGDVRISTGSLLLTNTASISAATFGTGNAGNVIIDARESIFLDSQSRIASSVQELARGQGGDIKITTNSLSLSNSAALFTTTLGQGNSGKINIATNSLDITNNAIISSITLGQGNAGNIIINAREGISLDGGFILSAVNTESVGQGGDIGIITESLSLTNNAILSSSTLGQGNAGNLMINAHGFVLFDRSNISSSALDTAVGDGGDISITTGSFSISNGTQLFASTLGRGDAGNIYISASEAVNISGTDANKRFSSGLFTSTSTGKGGDIVVNTNLFRLSDSAVLDARTVNEGNGGNITVNANSLEVLNGGQLITTTLGRGNAGKITVNATEKVIVNGNDASFNDRVAQFSGNVANVDAASGLFVRSDGLGSAGDIEVNSPFVLLDNGGRFIAESRSVNGGDISVNAGNALLLRRGSQISTTAGTAQAGGNGGNININAGFVIALPNENSNITANAFSGTGGQVQINTQGIFGIEPRLNDSINSSDITASSTTGINGEIIINTPNVDPTQGLTNLPGDIVNTASLVDSGCTAFGDKTGSQFTVTGRGGLPTSPDDVLNGDAVWSDTRLTVAAKPQNGSTSRVNTPQKSSNAIAIVPATGWVFNNKGEVTLVSQVAKANAFNFDSNHVACVKP
>NC_019676.1|WP_015115111.1|5108188_5109109_-|NAD(+)-kinase
MQLKQVIIAYKARDSQSKRWAEICAKQLENRDCHVLMGPSGPKDNPYPVFLASSGQPIDMALVLGGDGTVLTSARHLAPAGIPILGVNVGGHLGFLTESVDEFQDTEKVWDRLFEDRYAIQRRMMLQAAVYEGHRTNLEPVTERYLSLNEFCVKPASADRMITSILEMEIDGEVVDQYVGDGLIISTPTGSTGYTVSASGPIMHDGMEAVTITPICPMSLSSRPLVLPPGVVVSVWPLGDYDLSTKLWMDGVLSTSIWPGHRVDVRMADCRAKFIVLRENNSYYQTLREKLLWAGTRVRYSNNHRN
>NC_019676.1|WP_006199065.1|5109115_5109421_-|NADH-quinone-oxidoreductase-subunit-NuoK
MQLQYFLLLAAALFCIGIYGLITSRNAVRVLMSIELLLNAVNLNLMAFSNFLDSTLIKGQVFTVFVITVAAAEAAVGLAIVLAIYRNRDTVDMEQFNLLKW
>NC_019676.1|WP_015115112.1|5109582_5110182_-|NADH-quinone-oxidoreductase-subunit-J
MNLAEGVQIVSFGILAVMLIGAALSVVLSSSIVYSAFMLGGVFISMAGMYLLLNADFVAAAQVLIYVGAVNVLILFAIMLVNKRQDFAPFPSAGVRKVLTGVVSIGLFGLLSAMVLATPWAYSTTPVAGESSIILIGEHFFTDFLLPFELASILLLMAMVGAIILARREYLPDQVTPSTILTLPERPRELVSAGRETQD
>NC_019676.1|WP_015115113.1|5110413_5110989_-|NAD(P)H-quinone-oxidoreductase-subunit-I
MLKFLKQVVDYGKEAIQAGRYIGEGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWEFDKGSKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHDLNYDSVALGRLPYKVTNDPMVTPLRELVYLPKGVLDPHDLPADAPRAGARPEDLVEK
>NC_019676.1|WP_015115114.1|5111078_5112197_-|NADH-quinone-oxidoreductase-subunit-NuoH
MNSGIDIQGTFIKSVMDLGLPAGTAKALWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEFIGAFGLLAPVADGLKLVFKEDIVPGKADPWLFTLGPIIVVLPVFLSYLIVPFGQNLVITDVSMGVFLWIALSSIQPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIAMMSNSLSTIDIVNQQSGYGILGWNIWRQPVGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLVLSALLVSVLYLGGWDFPIPLNTIASLLGISETNPVLQVVTAGLGITMTVIKAYLLVFIAILLRWTVPRVRIDQLLDLGWKFLLPVGLVNLLLTAALKLAFPVAFGG
>NC_019676.1|WP_015115115.1|5112658_5113795_-|citrate-synthase
MMVCEYKPGLEGIPAAQSSISYVDGQKGILEYRGIRIEELAEKSTFLETAYLLIWGELPSKEELQAFEEEVRLHRRIKYRIRDMMKCFPESGHPMDALQASAAALGLFYSLRDLHNPAYIRDSVVRLIATIPTMVAAFQLMRKGNDPVKPRDDLDYSANFLYMLNEKEPDALAAKIFDICLILHVEHTMNASTFSARVTASTLTDPYAVVASAVGTLGGPLHGGANEEVIQMLEEIGSVENVRSYVEERLQNKQKLMGFGHRVYKVKDPRAIILQDLAEQLFDKFGGDKYYEIAQEMERVVEEKLGHKGIYPNVDFYSGLVYRKMGIPTDLFTPIFAIARVAGWLAHWKEQLAENRIFRPTQVYNGKHEAPYIPLEER

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019676_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_22

5241496-5241606

Orphan

Consensus_repeat	Method
CGTTTCGAGTTCTGAAGACAAAGTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_22

>merge|NC_019676|22|5241496-5241606|CRISPRCasFinder
CGTTTCGAGTTCTGAAGACAAAGTTCCAAGTAAAAAGCTTGGCGTTTCGAGTTCTGAAGGTGAAGTTCCGAGTAAAAAGCTTAACGTTTCGAGTTCTGAAGACGAAGTTCC

>NC_019676|22|21|5241496-5241606|CRISPRCasFinder
CGTTTCGAGTTCTGAAGACAAAGTTCC	AAGTAAAAAGCTTGGCGTTTCGAGTTCTGAAGGTGAAGTTCCGAGTAAAAAGCTTAA
CGTTTCGAGTTCTGAAGACGAAGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115221.1\|5237243_5237834_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_019676.1\|WP_015115220.1\|5236508_5236859_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115235.1\|5253296_5253728_-\|lasso-peptide-biosynthesis-B2-protein	unknown	unknown	gnl\|CDD\|379206
NC_019676.1\|WP_015115234.1\|5251259_5253293_-\|lasso-peptide-isopeptide-bond-forming-cyclase	unknown	unknown	gnl\|CDD\|238364
NC_019676.1\|WP_015115229.1\|5247085_5248903_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_019676.1\|WP_015115217.1\|5234780_5235113_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115232.1\|5250490_5250691_-\|lasso-peptide	unknown	unknown	unknown
NC_019676.1\|WP_015115230.1\|5248961_5249849_-\|Hpr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|275147
NC_019676.1\|WP_044501068.1\|5238892_5239702_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115225.1\|5240967_5241441_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115233.1\|5250972_5251152_-\|lasso-peptide	unknown	unknown	unknown
NC_019676.1\|WP_015115228.1\|5245232_5247044_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224043
NC_019676.1\|WP_015115224.1\|5239786_5240857_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|340818
NC_019676.1\|WP_015115219.1\|5235743_5236076_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115236.1\|5253711_5254017_-\|PqqD-family-protein	unknown	unknown	gnl\|CDD\|377508
NC_019676.1\|WP_015115231.1\|5250128_5250323_-\|lasso-peptide	unknown	unknown	unknown
NC_019676.1\|WP_015115226.1\|5241702_5244111_-\|glucosylceramidase	unknown	unknown	gnl\|CDD\|226800
NC_019676.1\|WP_015115218.1\|5235298_5235703_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_157374107.1\|5237832_5237988_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115222.1\|5238028_5238802_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115221.1\|5237243_5237834_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	6.80087e-24
NC_019676.1\|WP_015115228.1\|5245232_5247044_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	2.9696e-128
NC_019676.1\|WP_015115224.1\|5239786_5240857_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|340818	cd03785, GT28_MurG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. MurG (EC 2.4.1.227) is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.0936e-131
NC_019676.1\|WP_015115234.1\|5251259_5253293_-\|lasso-peptide-isopeptide-bond-forming-cyclase	gnl\|CDD\|238364	cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.	6.46811e-78
NC_019676.1\|WP_015115236.1\|5253711_5254017_-\|PqqD-family-protein	gnl\|CDD\|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	1.73158e-18
NC_019676.1\|WP_015115226.1\|5241702_5244111_-\|glucosylceramidase	gnl\|CDD\|226800	COG4354, COG4354, Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism].	0
NC_019676.1\|WP_015115235.1\|5253296_5253728_-\|lasso-peptide-biosynthesis-B2-protein	gnl\|CDD\|379206	pfam13471, Transglut_core3, Transglutaminase-like superfamily. This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.	5.05261e-22
NC_019676.1\|WP_015115229.1\|5247085_5248903_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.09376e-104
NC_019676.1\|WP_015115230.1\|5248961_5249849_-\|Hpr(Ser)-kinase/phosphatase	gnl\|CDD\|275147	TIGR04352, hypothetical_protein_imdm_1353, HprK-related kinase A. A number of protein families resemble HPr kinase (see TIGR00679) but do not belong to that system. They include this family, which appears instead to be the marker for a different type of gene neighborhood, in which one of the conserved neighboring proteins resembles (but is distinct from) PqqD.	0.000186829
NC_019676.1\|WP_015115222.1\|5238028_5238802_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.67361e-152

>NC_019676.1|WP_015115225.1|5240967_5241441_+|hypothetical-protein
MSRSPISATLSQTDRDALLQAIATIKEQLPFLIDLSNEERKALPKMGDKSRAFVSKALEVATQNPEFLPRSFDLDEMRKDVQLFEALYPLLLSLTQLQELVDDTSLAVGSEAYAAALQVYNYAKASGQGGGLETVLEEMGQRFVRKSRKVKSQSATL
>NC_019676.1|WP_015115224.1|5239786_5240857_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MTNAPIKLLIAASGTGGHLFPAIALAEKLPDYEIEWLGVPNRLETQLVPKQYPLNTIPVEGFQQGFGLASLKILAKLIGSIIEVRRILKQGKFQGVFTTGGYIAGPAVIAARSLGLPVVFHESNALPGKVTRFFGPWCNAMALGFDAATKYLPKAKNVCVGTPVRSQFLAAEIPALDLTIPDNAPLIVVFGGSQGAVAVNKFVRQAASAWLDTGAYIVHLTGDRDPDAGIFKHPQYIELPFYDNMAALLRRATLAISRSGAGSLTELAVCGTPAILIPYPFAAEDHQSYNADVFTKAGAAITDKQSELTAEILQTQVLQLLQNPAELTKMGENAKAIAVPDSADKLASLLREVLET
>NC_019676.1|WP_044501068.1|5238892_5239702_-|hypothetical-protein
MTNIIAVFLKRQPRFSTQNWLLLSLLTLSLTSSLHNVQAATPPKPPAELNNLLTQIDTAASKGNAKAVLQFYSPNFTNGDGLNRTNLEKALLTLWKQYPQLRYTTKVQSWKSEGNAIIAETVTNISSPPSTNANNLALNATVTSRQRIAGGKIISQDILGERTLITSGNQPPQIDFKLPQQVKVGQQYSVDVIVKEPLGDDFLLGTAVEEPVTVEKYLNPSTLDLQLLTSGGIFKVGRAPATAGSHWISAVIVRGEGITMVTQRLRVMK
>NC_019676.1|WP_015115222.1|5238028_5238802_-|SDR-family-oxidoreductase
MISLKNKIVLITGASSGIGTACAKVFAGAGARLILAARRLERLQELANTLHQEFGTATHLLQLDVRDRPAVESTITNLPADWSNIDILINNAGLSRGLDKLHEGDFQDWEEMIDTNIKGLLYLSRYIVPGMVKRSRGHIVNLGSIAGHQTYPGGNVYCATKAAVKAISEGLKQDLLGTPVRVTSVDPGMVETEFSEVRFHGDGERAKRVYQGVNPLTPDDIADVIFFCTTRSPHVNINEVILMPVDQASATLVHRHN
>NC_019676.1|WP_157374107.1|5237832_5237988_+|hypothetical-protein
MIYSTIFRRINRSIHIDQANGKIKLETLTKPALIKLPMGLTKFVSQEIYIA
>NC_019676.1|WP_015115221.1|5237243_5237834_-|Crp/Fnr-family-transcriptional-regulator
MVSLHSSLSHAPTKNAKPHFTRRSFLPDQQNVLWQIEKGFVRTFTYLEDGTTVALGLWGPGDIIGKVLSKIEPYQMECLTKVEVKSLLIEDWYQAQETLIAHIQQAEELMVIRSYKKVDMMLIKLLAWLSKKFGSQVEQGRLIDMRLTHEDLAEMLGSTRVTITRILGQFEEEGLIDRLSLHRIVVREEDIWYYEI
>NC_019676.1|WP_015115220.1|5236508_5236859_-|hypothetical-protein
MILIKRYVVSIFSVAALGLASLPAHAETNQTSTQTVEQNAAIVGNDSQIYQRADQINIQNSRQRIRGRRSGGRVNQDNGQYTGQSAGAVGDGGRIGQRSRLINIQRNSIRRDQRRR
>NC_019676.1|WP_015115219.1|5235743_5236076_-|hypothetical-protein
MIAKKSLPLVVLLALMVLPSAASASRVEIRTDDSTTIVDSDNGVKIISEEDRDQSTDSYYTQSESSARRRLRRYYRQAPCRRYTSSYTKHQNNYSGRSVTQSTTSTTVCR
>NC_019676.1|WP_015115218.1|5235298_5235703_-|hypothetical-protein
MKSKLLFIGWLSSSALLSISPAVTEPVAAQCVMTDVSVQVAVRGSRQPSRQSNNVDLQNQGRCSGNAITQVGTQVYTGSGRANQQRTSRQRINGGRGNGTGINGPTIKVPVGVKVDVYNPAYDPSLTRPRNFRR
>NC_019676.1|WP_015115217.1|5234780_5235113_-|hypothetical-protein
MRKKKFIFSLLTAVATFGLVASPTLAEVNSNQGANQTAAINGDNNTIIQIINQTNRQQNSRGRINRRQSPDQRRGNFNRNQGYGRRENSRRDRGNNYGRYKKYRHNNWDR
>NC_019676.1|WP_015115226.1|5241702_5244111_-|glucosylceramidase
MTNQHSPEIPEYTWNRPIGLGWDKPYTVRYASNIDDGPWHGMPLGGFGAGCIGRSSRGDFNLWHIDGGEHIFQNVPACQFSVFESYGTSSQAYALSTQSLEDGSLNAWQWYPASSESTSTGTYHALYPRSWFVYENVFQSQLTCEQFSPIWANNYQETSYPVAVFLWKAHNPSNAPITLSIMLTWENMVGWFTNALKSPEVKIRDDGSPVYEYQPRWGESQGNYNQVVENSEYFGCFLGRVGITAPVQEGDGSWCIATVKHPQVEIFHHSKWHPEGTGDEVWQSFAADGSLPNYLDTNPVGENQRLGSAIAVRFNVQPGETLEIPFVLAWDCPVTEFAAGVNYYRRYTDFFGKDGNQAWEIATTALGNYQTWRSQIQSWQAPILNREDLPAWFKMALFNELYDLTSGGTLWSAASEIDPIGQFAVLECLDYRWYESLDVRLYGSFGLLLLFPELEKSVMRAFARGIPQSDDHQRIIGYYYTIGADTTTAARKVAGATPHDLGAPNEHVWEKTNYTCYQDCNLWKDLSCDFVLQVYRDYLLTGADDVEFLADCWDAVVQTLDYLKTFDKDGDGIPENSGAPDQTFDDWRLLGVSAYCGGLWLAALEAAIAISDILITNHKVVESAEKQKSIYEVWLAQSRPIYQEKLWNGQYYRLDSESGSAVVMADQLCGQFYARLLELPDIVPSDRALSALKTVYDACFLKFQNGEFGAANGVLPDGSPENPKATHPLEVWTGINFGLAAFLVQMGMQDEALRLTQAVVEQVYNNGLQFRTPEAITATGTFRASTYLRAMAIWGIYLVMSK
>NC_019676.1|WP_015115228.1|5245232_5247044_+|molybdate-ABC-transporter-permease-subunit
MPQDLSPLWISLKTSLLATFITFFVGIAAAYWMLSYRGKAKSLIESIFVAPLILPPTVVGFLLLLFFGKNGPVGKLMEPFDLTIVFTWYGAAIAATVVSFPLMYKTALGAFAQIDRNLLRVARTLGASESTIFWRISLPLALPGILAATTLAFARALGEFGATLMLAGNIPGQTQTIPMAIYFAVEAGAMDEAWFWAIAIMVISLSGIFAVNFWQETRGKGRRKDVGIRRQERRVAESAVLSTPTSEVRLFVDIEKKLPSFHLQVSFSTNEQPLGLLGGSGAGKSMILRCITGIETPTRGRIVLNGRVLFDSEKGINLPSRDRHIGFLVQNYALFPNMTVAENIAFGLPQGLSASSVRVQIEEQLIAMQLSGLGDRYPHQLSGGQQQRVALARALASQPEALLLDEPFSALDTHLRSQLEQQMTATLADYQGVALFVTHNMDEAYRVCPNLLVLEHGQAIHHGSKYDVFEHPASVSVAQLTGCKNFSRAVIQGTQKIQALDWGCHLDVVQPIPDELSHVGIRAHQLIFSPDSTQVNTFPCWLVRTSETPHRMTLFFKLHTAPNNLQDYHLQAEVFKEKWVQIKDQPFPWYVRLDPIRLILMES
>NC_019676.1|WP_015115229.1|5247085_5248903_-|ABC-transporter-ATP-binding-protein
MQLGKKIRDKLQNTLRLLPALRLVWQSSPGWTIARVVLLTIQGILPVVSIYLSKLIIDAVAANVSLADKALAFRNVLILIVIAGGVTLLTTLANSLTELVTTAHSQRVTDYMQGIINAKSIEADLEYYENSLYYDTLQRAQQEAPYRPPQILNRLAQIGQNSISLVAMIGLLLTLHWGILGVLFVAALPAMLVRVKYSRIMYDWQRKWTPMQRQGFYLAWMLTSDQFAKEIRLFDLGHYFSNWYLRIRRQIYKESLKIFTRRFIANFAAEAIAGILIFAIYALIIYQAINGVLRLGDLVLYYQALQRGQNDIKSLLANISALYEDNLFLGNLYEFLDLKPRLVDSVNPKPIPRPIQTGIVFHDVSFQYSTTTRQALHNINLNIKPGEVVALVGENGSGKTTLIKLLCRLYDPTAGSITIDGVDIRDYKIAELRRDISVIFQDYAKYNFTAQENIWLANIELPANRESIMTAARRSGADDMITKLPKGYDTILGKLFDQGEELSIGQWQKIALARAFLRDSQLIVLDEPTSAMDPKAEYEVFEKFRQLIQNQAAILISHRLSTVKMADRIYVMENGTIVESGTHNELIQLGSRYAYLYETQAKQYR
>NC_019676.1|WP_015115230.1|5248961_5249849_-|Hpr(Ser)-kinase/phosphatase
MYVYTAYNLGIHSEFPLPELIPSDKPADVVIRLGKLNEPQQKRSDGGNHLLATIAEFGMVLVKDGKEIVIDPNPGVDEALIRTFLLGVIICVLLRQRGLLVLHASSVVINDRAVAFMADSGFGKSTLAECFHAHGYSILTDDVLAIQVGEKQPLVIPGFPQIKLWPDAVASFGHVPESLPLLNSQTVKRVHRLQDGFFQQSVPLQKIYVLAWGTHSEIVPLEAKQSFGELVRHSREMQALTAPEFLKEHFRQCMSVVQQVPIYSLRRQHSLAALPELVKLVENELVQENLSAVTI
>NC_019676.1|WP_015115231.1|5250128_5250323_-|lasso-peptide
MKKAYEAPKLTNYGSVQNVTHAFGRPGETDTFQIGDNPTQFPGEVLGLEGSVNGVLNPVPRVPR
>NC_019676.1|WP_015115232.1|5250490_5250691_-|lasso-peptide
MKKAYEAPQITNYGRVQDVTNAFGDDGSADTFQVGNNPTQFPGEILGLSGSAANGIIIPVGSNRGR
>NC_019676.1|WP_015115233.1|5250972_5251152_-|lasso-peptide
MKKAYEAPQLTNYGSVQNITNAFGSAGGRDTFLIGSNPTPVPGSTIGLSGSQNGVLIPN
>NC_019676.1|WP_015115234.1|5251259_5253293_-|lasso-peptide-isopeptide-bond-forming-cyclase
MSGIVGIYNLDSQPVEKKKLALMVDAIAHRGSDGADIWCSGAVGLGHRMLWSTPESLLEKLPLVDSTGELVITADIRIDNREELISALSIDNCPQEKITDSQLVLAAYEKWGEQCPKKLLGDFAFVIWDQRKQTLFCARDHFGIKPLYYYYQPGEKLYFASEMKALLCLPGVPKVVNEIAIANHLHPFTEDKSITAYKNIYRLPPAHTMTVSYTSGLISHAYWSLEVGEELRLNSDAEYAAAFREVFTEAVRCRLRSAFPVSCHLSGGLDSSSIACVARDILLQEKNAQLHTFSNIFADVPECDERQYINPVLNQGGFIPHYVHADQSGPLSEWQDYYKYMEEPFIGPSHFLVWGLNRAAQQAGIRISLDGFDGDTTVSHGVTYFAELARQGKWQTFIQEAQAISQHFNTSVAAIFYEYAITYLQELVKQRKMLTFVQTALQISQHFQVSRRKLFVTYGIKPLVPQYILKIWRSLRGHKQNQPQVTSLINPQFAKTVGINPLTQSQDQDQSRAVTVREEQCRTLNSTLFTTVLELGDLCSAAFSLESRHPFMDKRLIEFCLSLPPEQKLNQGWSRFIMRKGLDGILPQEVQWRGGKTDMSPNFQRGLLHFDRLLVDQVITNDGSNLQEFVDLNTLRRYYDNLISTTEDANDDSTIPVWKALTLSLWLNHNQKNHKSD
>NC_019676.1|WP_015115235.1|5253296_5253728_-|lasso-peptide-biosynthesis-B2-protein
MKYLLKILQLTNSDRQFLLGTFVLLGLVRLGMRLLSFNYLRKLINQHSKPNPRVETVSLNKIVWAINISTRYTPGGAKCLARALTCQVLMTRYGYSPELRIGVVKGEAGNLEAHAWIETQGQVVIGYLPDLSRFTPLPSFAGI
>NC_019676.1|WP_015115236.1|5253711_5254017_-|PqqD-family-protein
MLTKLSSSENLSVVASREQICSELQGEVVILDIKSGAYYGLNQVGASIWNFIQSPKTIQEIQDAILAEYEVAAEVCKLDISALLEDLAAKGLIEIKNEVSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019676_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_23

5474143-5474404

TypeV-U5

V-U5

Consensus_repeat	Method
CCTTTCAACCCACCTCTAGCCGGGATGGTTGTTGAAACT	CRISPRCasFinder

3 spacers

c2c5_V-U5

The CRISPR arrays of NC_019676_23

>merge|NC_019676|23|5474143-5474404|CRISPRCasFinder
TCTTTCAACTCATCCCTAGCTGGGATAGTTGTTGAAACTTAGAGTCACCCAGTTTGGCATTAGATACTATCTTTTTTCAACCTACCCCTAACCAGGATGGTCGTTGAAACCTGGATATGCTCAATACAAGGGTACAACCACGGTAGCGCCTTTCAACCCACCTCTAGCCGGGATGGTTGTTGAAACTTCGAGTCCTGGATAGCCTGTGTGAACGTCTTTTGCCCCTTTCAACCCACCTCTAGCCGGGATGGTTGTTGAAACT

>NC_019676|23|22|5474143-5474404|CRISPRCasFinder
TCTTTCAACTCATCCCTAGCTGGGATAGTTGTTGAAACT	TAGAGTCACCCAGTTTGGCATTAGATACTATCT
TTTTTCAACCTACCCCTAACCAGGATGGTCGTTGAAACC	TGGATATGCTCAATACAAGGGTACAACCACGGTAGCG
CCTTTCAACCCACCTCTAGCCGGGATGGTTGTTGAAACT	TCGAGTCCTGGATAGCCTGTGTGAACGTCTTTTGCC
CCTTTCAACCCACCTCTAGCCGGGATGGTTGTTGAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115432.1\|5490209_5492072_+\|DUF1998-domain-containing-protein	unknown	unknown	gnl\|CDD\|378167
NC_019676.1\|WP_015115430.1\|5485276_5485726_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_019676.1\|WP_015115433.1\|5492077_5492875_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197230
NC_019676.1\|WP_015115421.1\|5470048_5471524_-\|DNA-phosphorothioation-system-restriction-enzyme	unknown	unknown	gnl\|CDD\|274978
NC_019676.1\|WP_015115429.1\|5484991_5485273_+\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NC_019676.1\|WP_011318165.1\|5492913_5493174_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NC_019676.1\|WP_015115420.1\|5469559_5469733_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115416.1\|5461089_5461566_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115426.1\|5476970_5477132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222824
NC_019676.1\|WP_015115417.1\|5463643_5465014_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235059
NC_019676.1\|WP_157374119.1\|5462836_5463352_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115418.1\|5465097_5467248_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_019676.1\|WP_015110984.1\|5461685_5462831_+\|IS4-family-transposase	unknown	unknown	unknown
NC_019676.1\|WP_015115427.1\|5477701_5480983_+\|helicase	unknown	unknown	gnl\|CDD\|350769
NC_019676.1\|WP_015115423.1\|5472466_5473387_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NC_019676.1\|WP_015115431.1\|5486664_5490213_+\|helicase	unknown	unknown	gnl\|CDD\|197757
NC_019676.1\|WP_015115428.1\|5480996_5484962_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NC_019676.1\|WP_015115425.1\|5474900_5476808_-\|hypothetical-protein	c2c5_V-U5	-	gnl\|CDD\|273793
NC_019676.1\|WP_015115422.1\|5471629_5472235_-\|repressor-LexA	unknown	unknown	gnl\|CDD\|224885
NC_019676.1\|WP_015115419.1\|5467490_5469563_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274475

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115432.1\|5490209_5492072_+\|DUF1998-domain-containing-protein	gnl\|CDD\|378167	pfam09369, DUF1998, Domain of unknown function (DUF1998). This family of proteins are functionally uncharacterized. They are mainly found in helicase proteins so could be RNA binding. This family includes a probable zinc binding motif at its C-terminus.	3.46893e-12
NC_019676.1\|WP_015115430.1\|5485276_5485726_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.6781e-31
NC_019676.1\|WP_015115421.1\|5470048_5471524_-\|DNA-phosphorothioation-system-restriction-enzyme	gnl\|CDD\|274978	TIGR04095, type_III_restriction_protein_res_subunit, DNA phosphorothioation system restriction enzyme. The DNA phosphorothioate modification system dnd (DNA instability during electrophoresis) recently has been shown to provide a modification essential to a restriction system. This protein family was detected by Partial Phylogenetic Profiling as linked to dnd, and its members usually are clustered with the dndABCDE genes.	0
NC_019676.1\|WP_015115429.1\|5484991_5485273_+\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	1.74233e-05
NC_019676.1\|WP_011318165.1\|5492913_5493174_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	3.7827e-18
NC_019676.1\|WP_015115423.1\|5472466_5473387_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NC_019676.1\|WP_015115433.1\|5492077_5492875_+\|hypothetical-protein	gnl\|CDD\|197230	cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins. Putative catalytic domain of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. Members of this subfamily contain one copy of HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	9.63176e-29
NC_019676.1\|WP_015115426.1\|5476970_5477132_+\|hypothetical-protein	gnl\|CDD\|222824	PHA01623, PHA01623, hypothetical protein.	0.00518048
NC_019676.1\|WP_015115417.1\|5463643_5465014_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
NC_019676.1\|WP_015115418.1\|5465097_5467248_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_019676.1\|WP_015115427.1\|5477701_5480983_+\|helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.78692e-58
NC_019676.1\|WP_015115431.1\|5486664_5490213_+\|helicase	gnl\|CDD\|197757	smart00490, HELICc, helicase superfamily c-terminal domain.	6.43798e-08
NC_019676.1\|WP_015115428.1\|5480996_5484962_+\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	1.45129e-06
NC_019676.1\|WP_015115425.1\|5474900_5476808_-\|hypothetical-protein	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	8.6324e-05
NC_019676.1\|WP_015115422.1\|5471629_5472235_-\|repressor-LexA	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	9.85299e-75
NC_019676.1\|WP_015115419.1\|5467490_5469563_-\|AAA-family-ATPase	gnl\|CDD\|274475	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification].	1.97321e-31

>NC_019676.1|WP_015115423.1|5472466_5473387_-|ornithine-carbamoyltransferase
MAVLIGRDVLSLADFSPTELQEILELAGKLKSQELKLRCNKVLGLLFSKASTRTRVSFTVAMYQLGGQVIDLNPNVTQVSRGEPIQDTARVLDRYLDILAIRTFAQQELEIFANYAKIPVINALTDAEHPCQILADLLTIQECFGKLAGLTLTYVGDGNNVANSLMLGCALTGMNVRIATPKGFEPDAKIVEQARAIAGGKTEVMLTHDPELASKDASVLYTDVWASMGQEQEADDRMPIFQLYQISEQLLSLADQDAIVLHCLPAHRGEEITEEVIEGSQSRVWDQAENRLHAQKALLASILGAE
>NC_019676.1|WP_015115422.1|5471629_5472235_-|repressor-LexA
MERLTEAQQELYEWLAEYIRMHQHSPSIRQMMQGMNLKSPAPIQSRLEHLRNKGYIEWTEGKARTIRVLHPIKQGVPILGNIAAGGLIEPFTEAVDYLDFSNLSLPPQTYALRVTGDSMIEDLIADGDLVFLLPVAEPNQLKNGTIVAARVDGYGSTLKRFYRNGDRVTLQPANQKYSPIEVSAMQVQVQGSLVGVWRGYN
>NC_019676.1|WP_015115421.1|5470048_5471524_-|DNA-phosphorothioation-system-restriction-enzyme
MYLTQNSVQQVPSFRLRIPFAREGKGKYHHQPLPGCPRIPSSLQLRQYQRQAVTNWFANNGRGTLKMATGSGKTITALAIACELYQQINLQVLLVVCPYRHLVTQWARECEKFNLQPILAFENVRSWQSQLSTQLYNLRSGSQGFITIITTNSTLIGEGLQSQLKYLPPKTLIIGDEAHNLGAPKLEESLPRRVGLRLGLSATPERYFDDSGTQSLFDYFGPVLQPEFTLRDAIAQGALVHYLYYPILVELTETESIAYLKLTKKIGRSLLYRERKTENSPNFEDNEDLKPLLMQRARLIGAAGNKLNALRQLMTTRRETTHTLFYCSDGSLETGRSSLQQLKAVVKILGGDLGYKVSTYTAQTPLAEREVLRHQFESGELQGLVAIRCLDEGVDIPAIKTAVILSSSGNPRQFIQRRGRVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARMKLLDLQKRYGLLDV
>NC_019676.1|WP_015115420.1|5469559_5469733_-|hypothetical-protein
MLPEQNIDDVQEPITSASAEVQQIIERVWHLEKSRLDKKSNSPINDDILAIVKEAVQ
>NC_019676.1|WP_015115419.1|5467490_5469563_-|AAA-family-ATPase
MKLTSIKLCNFRSFYGRTPEIVLSGGDILNTTIIHGNNGSGKTSLLNAFTWVLYERFSAAFASTEQLVNKRAIAEAKTGQSVECWVEVNWEHEGKRYNAKRQCRIYKDKTDLESIKTELLMQVAGDDGRWYFPLQKPEEIIGQILPASLHQYFFFDGERIEEIVRSDKKAEIAEAIKIFLGVEVINRSIKHLSEAKKSLENELKAIGDSAIKQLLKAQEKLEQEIAKINTRQTEIKQELEYQQSFKKETGNRLLELSAAKELQDRRQELENQKTSHQENLRQTRDALKKIISARGYTILLSDTTTQFRTILNELKARGELTSGISREFINELLKSQHCICGAELNAGNHNHTNVSDWLEKAGSSVVEETAIRMSAQVDEIDKQAIAFWEEVDREQTRINQFRQNISQIELELDTIQERLRKDANEEISSLQKRLDEIESKIDELNREQGANQQRILHLKTEIDALIKQIAKQKLNEEKQLLAQRRINATQDAIERLTEVRNRQEKQFRLQLEQRLQEIFTAISFAPYLPKISDKYELTLVENTAKIESLVAASTGENQILSLSFIASIIDKVREWSEKRKVLTVPNSSTFPIVMDSPFGSLDETYRRRIAQTLPQLANQLIILVTKTQWRGEVEQEMANRIGREYVLTYYSSKPDCEQDYIELGEERYPLVKQSPNEFEYTEVMVVERNW
>NC_019676.1|WP_015115418.1|5465097_5467248_-|glycine--tRNA-ligase-subunit-beta
MPDFLLEVGTEELPANFLSDAIVQWRSRIPQTLAANSLNSDAVEVYGTPRRLAVLIKGLPQQQPDREEEIKGPPAQAAFKDGQPTPAAIGFAKKQGVELDALQVRPTDKGDFVFVNKKTPGRPVADIFTELVPQWIFTLEGKRLMRWGDGDVRFSRPVRWLVALLDDAILPIELVNGSDRITSDRISHGHRVLHPATVTIHHATDYVETLRAAYVVVDNNERATTIEKEVHAAVNSVNGSTEIYPDLLKEVTNLVEWPSPVVGKFDSAFLNLPTEVITTVMVSHQRYFPVFKGENHQELLPNFITISNGDPTKSDIIAKGNERVIRARLADGQFFYNADVAKPLESFLPQLEKVTFQEDLGSLRVKVNRIVNIAEQIATQLVLSAAESQNIQRAALLCKADLVSQMIYEFPELQGIMGQKYALASGEPEAVATAIFEHYLPRGADDILPSTLTGQVVGLADRLDTLVSIFGLGLIPTGSSDPFALRRAANAIVNITWAANLGINLDNLLQQTAANFAQEYNKKSGQLVTTLQEFFLQRIRTLLQEEKQIDYDLVNAVLGENDPEYTERALQDLLDVRDRALYLQQIRNDGTLDKIYETVNRSTRLAAQGNLDTKQLEPAGLINPELFQKSSEKAFYDAIVELVPQTQTAQQSRNYQLLIAALAKIAPTVGNFFDGPESVLVMDTNPDIKRNRLNLLGLLRNHARVLADFGSIVKNL
>NC_019676.1|WP_015115417.1|5463643_5465014_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MSKAHVIGLGKSGVAAARLLKREGWEVELGERNTSDTFLQQQQELAAEQITVKLGYSLDLNSPDLPQLIIVSPGVPWDVPLLVKARELGIETIGEMELAWRHLKSQPWVAITGTNGKTTTTALIAAIFQAAGFDAPACGNIGYAACEVALAPILPDWVIGEISSYQIESSSSLAPRIGVWTTFTPDHLARHKTLETYYDIKAKLLKQSQLQVFNGDDAYLNKVGLNHWPDAYWTSVKGQDFLIGKKGFYIEDGWVVEKLTATSTPTRIIPASALRMVGEHNLQNLLMSVAAARLADIQPDAITKAIQEFPGVPHRLEHICTWEGIDFINDSKATNYDAAEVGLASVKSPTILIAGGEAKPGDDTGWLAKIQAKAAAVLLIGAAAPAFVQRLQEVGYTNYEIVETMAKAVPRSAELAKQHQAPVVLLSPACASFDQYPNFEVRGDDFRQLCLAWAGR
>NC_019676.1|WP_157374119.1|5462836_5463352_+|hypothetical-protein
MSPLQQKGFANFNLAGYYKRKYRGVVEPAGWFLLTNLDSLKDAIKAFKLRSGIEAMFKDCKTGGYNLESTYADGQRLIALILLIAIAYTCAILVGRNSRSSGLQKYVGRLKELQRLHRRHSAFWIGLYGQLWVGAMEFWADLAHELMRLKPSKLPYFQQGLRAMTLIQSAL
>NC_019676.1|WP_015110984.1|5461685_5462831_+|IS4-family-transposase
MLPKFYQNCFQNVLTPAQYKMLEILLMLLQFHKTVTIEKLATVFPQPIKFESRRRSIQRFLLLPQLSIPYLWFPLLKRWVKNSLKRGEKRLIFAIDRTQWRSQNVFVISLIEQKRAIPVYWLLLPKKGCSNLGEQKKLIRPLLQLFKGYQMLVLGDREFHSIKLANWLHSKGIDFVLRQKQGTYIRQENQSHQRLQSLGLTPGISFFLTGIQATKQKGFANFNLAGYYKRKYRGVVEPAGWFLLTNLDSLKDAIKAFKLRSGIEAMFKDCKTGGYNLESTYADGQRLIALILLIAIAYTCAILVGRNSRSSGLQKYVGRLKELQRLHRRHSAFWIGLYGQLWVGAMEFWADLAHELMRLKPSKLPYFQQGLRAMTLIQSAL
>NC_019676.1|WP_015115416.1|5461089_5461566_-|hypothetical-protein
MNPGTPYELYAALVGYHHHSLSYYHWHTEKIVPVSEPRGLPEDMNPIYQDYFENKGLGMGHHFTWFMVQEIIDYDWDRIFPPCKGYVNYQYASLFSASAPFPDNLPDDEPVYKIKKDNTTEVSWVQSYREYVGCVDWFIQELLKLGHPAEIRILFWLH
>NC_019676.1|WP_015115425.1|5474900_5476808_-|hypothetical-protein
MSVITIQCRLVAEEDILRQLWELMADKNTPLINELLAQVGKHPEFETWLDKGRIPTKLLKTLVNSFKTQERFADQPGRFYTSAIALVDYVYKSWFALQKRRKRQIEGKERWLTILKSDLQLEQESQCSLSAIRTKANEILTQFTPQSEQNKNQRKGKKTKKSTKSEKSSLFQILLNTYEQTQNPLTRCAIAYLLKNNCQISELDEDSEEFTKNRRKKEIEIERLKNQLQSRIPKGRDLTGEEWLKTLEISTANVPQNENEAKAWQAALLRKSADVPFPVAYESNEDMTWLQNDKGRLFVRFNGLGKLTFEIYCDKRHLHYFKRFLEDQELKRNHKNQYSSSLFTLRSGRLAWSPGEEKGEPWKVNQLHLYCTLDTRMWTIEGTQQVVDEKSTKINETLTKAKQKDDLNDQQQAFITRQQSTLDRINNLFPRPSKSRYQGQPSILVGVSFGLKKPVTVAVVDVVKNEVLAYRSVKQLLGENYNLLNRQRQQQQRLSHERHKAQKQNAPNSFGESELGQYIDRLLADAIIAIAKTYQAGSIVLPKLRDMREQISSEIQSRAEKKCPGYKEVQQKYAKEYRMSVHRWSYGRLIECIKSQAAKAGISTEIGTQPIRGSPQEKARDVAVFAYQERQAALI
>NC_019676.1|WP_015115426.1|5476970_5477132_+|hypothetical-protein
MAEETREVRGRLPKDLKIAFEIACARLELTQTAALEEAIKEWLKKHESTSSDK
>NC_019676.1|WP_015115427.1|5477701_5480983_+|helicase
MSVVTGQIVRVRSRQYLVEDVVAKPLVKEDTLVCLSCLEDDALGEQLEVLWEREVDAKVIGKTSWESIVNRGFDNPRLFSAYLHTLRWNCVTSTDPKLFQAPYRAGIEVKAYQLEPLRKALLMPRVGLFIADDVGLGKTIEAGLILREMLMRQKVRRVVISCPPSVVRQWQEEMESRFGLTFVIFDREFVASRRQERGYGINPWTTHSRFIISHALLRDETYAAPLRDWLGDFAGASMLILDEAHNAAPASGAKYAVDSQLTRTVRDIAPRFEHKLFLSATPHNGHSNSFAALLEILDPQRFCRGVPVRDRKLLDTVMVRRLKQDLREIGEEFPERRVIPIVIDHLPEDAPELKLSRLLQEYRNLREERLKEASKSTQNAAMLVITSLQKRLLSSIEAFARTLKVHRVAIEKQSINPSASLRDATRTLRASRSGNAIDNLPLLLESPGADDERAELAEEEVQAEEDTQVTVATGQAASFGLSSRELEILEEMTDVANQARYQADPRVEKLVAWIKQNLCPDLGKPNAAWVEKRVIIFTEYTDTKRYLQQKLQEAIAGSDKERERIDVFHGGIGEERREAIKNAFNADPSRHPLRILIATDAAREGVNLQNNCADLFHFDVPWNPSRMEQRNGRIDRKLQRSPVVHCYYLVLAQRTEDKVLKVLVKKTETIQKELGTLSPVVQKNLSRLLEGGIRHNQVTNITACIEQADLPNLQIVNEELEENRLRREELTKQLSQLQEMLKTSRDWLGLSDEHFRNAISASLEILGATPLAPVDSNEACQDSATARWTLPPLDQRADPTWANTFDTLRPPRKKGQKPWEWRREAAIRPVVFRDPGSLDGDVVHLHLEHRVVQRLLGRFLAQGFLHDELTRACVCLTDDPIPKVLALGRLSVYGQGASRLHDEVIAIAAEWSDPAARGRKKLQPLNEGEKDNVLALLEDSLASPRLQKASQTIKELLKQNAAQDIADLIPHLERRANILAQRAEKKLTERGKKEAVEMKKILEQQQQRISQRKKEIEETKAIQLTIPKLSIPFVEFPVEEKRQLDADCRHWEERLKKLVEEINSEPARIEASYEVKAVRVEPVGLIYLWPVSG
>NC_019676.1|WP_015115428.1|5480996_5484962_+|N-6-DNA-methylase
MVKDREIQAHKEWLGFLQPVGLVVSPTALNNAQMSVNRNVVELQQRLSEIVRRDFPDDSTNYTSVISDFPTFTVEILGWQPTDLVESPEDLAVSLPEYGETLQPTYTVPDPDKGGWLMLVQVISTGTDFDRVSENIKSTGWHATPQAKFERLLREKEIPIGILCNGTELRLVYAPRGESSGHLTFPVQAMCEVSGRLILGAMQMLLEEQRVFNAPTDRRLVALLQNSRKYQNEVSTKLSEQVLDALWELLRGFQAANDHAKGLLLDDIAQNDPQHIYGGIITVLLRLVFLLYAEDEGLMPQGSIYTRNYSVTGLYERLREDAGNYPDTMEQRYGAWAWLLSLFRLVYDGGCHADLYLPARHGQLFDPDEYAFLEGRSRHTTYKEWELIEPPRISDGVIHKVLQGLLVLDGERLSYRSLDVEQIGSVYEAVMGYEVKKATTPSIGVWSKPKSAKTSVTVVVSVDEVLNTKANDRAKYLKEVAGCEISGKSLTELKQAKTAEDLIAALGRKISPQTPALLAAGSLYLQPGEERRRSGSHYTPRALTEPIVKETLRPVLEALGERPTPEQILALKVCDLAVGSGAFLVEACRQLAEKLVEAWNQHGMISEVPSDEESLLYARRLVAQRCLYGVDKNPFAVNLAKLSLWLVTLAKKHPFTFLDHALKCGDSLVGLTRDQLVKFNWEKDTTYDDKELPLFNEQINKVKFNRDEIQSLGDENYDAKRDFYQATEELLHDARLKGDLVIASFFASDKDKARKEERDGLFQKYFKWRRSPDESAEVLSISKKLRQTDKPVKAFNWEIEFPEVFDRENPGFDAIVGNPPFAGKNTAINAHMDGYMDWLKVVNSESHGNSDLVAHFYRRAFALLRKSGCFGLIATNTIAQGDTRSTGLRYICENDGTIYNAQKRLKWPGLAAVVVSVVNVIKGDYQGKKLLDGREVDLISAFLFKSGGNNNPAVLLANADKSFQGSIVLGMGFTFDDSNPDATPIAEMHHLIEKNPKNQERIFPYIGGEEVNSNPTHEHHRYVINFFDMSEDEAWEYPDLIQIVKEKVKPERDTQKRDALRIKWWQYAEKRPGLVKAIAPLEQVLVRPRTSKHHAFTFLPNRMVYSENLVILALSDACFPVIHSRVHEIWVGFTSSTLEDRQGYRSSDCFETFPFPKNWETNPTLEAIGKEYYEYRAALMVRNNQGLTDTYNRFDDPDEYDPEILKLRELHTAMDKAVLDAYGWSDIPTDCDFILDYEEEEDTENSSGRQKKKPWRYRWREEIHDEVLARLLDLNQKRAEAEILGGKGAEKGKGKGRKTTKESKNSKNKNDTVIIPGMNVD
>NC_019676.1|WP_015115429.1|5484991_5485273_+|DUF2281-domain-containing-protein
MTIKEQITQELEKLPEPILQEILNYVQFLQAKYNQQNQVEATNNTVMISTGASLLKHLETIGDWQGDDLQECLEQVISSRGEAKFNYKFNPFD
>NC_019676.1|WP_015115430.1|5485276_5485726_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MYLLDTNHCSLAILGNTEILTHLAELESSFIATGVIVQGELIDMAERSQKRESNLILVKNFLQGIYIYNIDQETANIYGQIKSDLFKQFAPKEKNKRRKTKITDLGFGENDLWIAAIALQHNLTLVSADSDFKRIQEIKALSVESWLTS
>NC_019676.1|WP_015115431.1|5486664_5490213_+|helicase
MISKTISLTSAEVRSRLIEALQLDLIGPTSDDIDHAEEILDQAPSKWYLTGFLVPHGAPIEQRGDDTADDDLDQLQRGSAGEDETVPDKPFAKKAFFPSSMGLSFLVAENASQLNLTVQWGDYFPIKDNTAAQSQDDSGAEEIVSPLQLETTNPQEESNNSLLGCWKRIPRQAQITVPLMGDRNPEQLELGLGLNTPKQLKLPLNQNQSTKTIPIADSNGLQLVVSIRPVTSKELVPAGTRSVSVFLVNNRLSTSDKQRDISYIFQASLIIHTPEALVPRPNLRGRDNHDWDENVADLQYRDDYEYAVGHNVSAIALTNPDGSCQEIRTAWIPTADVEKVIATEEELKDVELRMEALADAPTPAALQNMLSPMVDAYADWIKEQRTKCPTEPKRLNVALDLLRRAEIANKRIDAGIKALNDPQIFEAFCIANRAIATAIRQRTTHGKTITPEIVAPPKWRPFQLAFLLMNLAGIAYPENGDRELVDLLFFPTGGGKTEAYLGLAAFTLVLRRLRYPSIKSAGLSVLMRYTLRLLTLDQLGRAATMICALELERQKNPQKLGTWPFEIGLWVGQAATPNRMGKKGDNDENSARERTRAFQNNDCNPSPIPLENCPWCGTKFNRNSFQLQPNPDQPTNLQVFCANRRCNFRGDKPLPIVAVDEPLYRRLPCFIISTVDKFASLPWVGETGALFGRVDRYDNDGFYGPTQLNRGKPLGGYLPPPDLIIQDELHLISGPLGTMVGLYETAIDALCSQEIDGKTIRPKIVASTATVRRASKQIQALFGRSEVDIFPPPGPDRRDSFFAKTVPATVKNARTYVGIAAQGRSLKVVLLRSYLALLGAAQKHWLEQGGKKNSDNPADPYMTLLGYFNSLRELGGSRRIVEDEVKSRLLRYSQHQRVDETSGLFADRKIDDEPEELTSRVSTSDVADTKRRMELTFDQEDKVDVVLATNMISVGLDITRLGLMVVLGQPKTAAEYIQATSRVGRDEERPGLVVTLLNIHRPRDRSHYERFFAWHSTFYRAVEATSVTPFSPRAIDRGIAAITVALARLGHPGMTAPTRAFDITQHRQELEFVVETIAQRAEMHDKELDANEAEALRHKVKNQVIDLLDDWTSIANGKISLQYQREVGEAPPLIFDPLDPELRNQPQKAQRFKAQRSLRDVEPTVNLWVINPYGHEVEEKGK
>NC_019676.1|WP_015115432.1|5490209_5492072_+|DUF1998-domain-containing-protein
MSKSNKKIPPAGQVRQSQILSTFGPGAMVDLPEHSVLIAGLNHWRGDRRRIFEDRLATRVAEILEVNNIKLYAPPVDEQDPKAPRTGINAFMFPTWFLAQVKETWEDTKTKKTFRTRPLLPWGNLVSGKYLSAEKKSIPVVPVRFVQACVKGHISDIDWYRFVHNDPENKCRGQLWLDEGGSGNDFAEIYVRCEACKKRRPLADATVRNGKVLGPCQGHRPWLGSFAQEPYCIRESTGLPEYNRLLVRSASNAYFSQILSVISLPDLDAGLRDAVNLVYEDFLQYSESVSDVKKERKKQKVTVALEQFSDEAVWEEVQRRQSGQGKPHKSIKQVEIETLLSSSLEVGEDVPDKDFYGRSRSLDNLQPAFTSCIERIVLVHRLREVIAQVGFTRFEAEMPDIDGELDISVRRALLDIETTWVPAIENKGEGVFIAFRQEAIEDWLKREAVKKRGRELSRGFDIWCARKGIDQEKEKVKFPGLPYIMLHSLSHLLIVAVSLECGYAASSIRERIYAGESGYGILLYTGSTGSEGTLGGLVEVGKRIEHHLEVALEQGRLCSNDPVCAQHRPDNEQEERFLHGSACHGCLLIAETSCERRNEFLDRALVVSTVEGLGAEFFPE
>NC_019676.1|WP_015115433.1|5492077_5492875_+|hypothetical-protein
MAFLQLSRPTLLKLATALENGRLSPPFLVSAIINYVPATLSQTVIDELNHLTGQGVKCSHIAYTLRLLAAERSASQQIRDRIELVWTGPEVTGSQSRDTSVVVRELFSNAKKTVLISSFAIDKGEKAKKLFQVLAGRMDANPELYVQMFLNIQRPHHSEVAESVLLREFAHTFRCDIWVGERLPEVYYDVRSLAVDVKQKSSLHAKCIVVDEESVLITSANFTEAAQERNIEAGVLLTDSATAQALRLQFDSLVSHKILRPIPGI
>NC_019676.1|WP_011318165.1|5492913_5493174_-|helix-turn-helix-domain-containing-protein
MSENQVIRWKLNEVMARKRVKNKDLAMILGITENSIYRLRKVDEMPRLAPERLNGICKALNCQPGELLEYLPDEGEGNVVSQADIV

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Crispr_ID: NC_019676_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_24

5566325-5568673

Orphan

A:N

Consensus_repeat	Method
GTTTAAACATCAACTAATCCCTATTAGGGA----------TTGAAAC	PILER-CR
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CRT
GTTTAAACATCAACTAATCCCTATTAGGGA----------TTGAAAC	PILER-CR
GTTTAAACATCAACTAATCCCTATTAGGGA----------TTGAAAC	PILER-CR

31 spacers

The CRISPR arrays of NC_019676_24

>merge|NC_019676|24|5566325-5568673|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGCATAAATGGATTATGTGAAAACTGCTCAGATGCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACACGACCCGCTACACCATTACGCCCATCTGTACCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCGTAAATAGTTTTACTTATCGCATATTTAACGTAAAGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCATATCTAGTTACGGTGTACTTTTCTACCCAGTGTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGGCGAAGCCATCGCGGTTCTACGCGCCAGAATTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCTTAGGACTACACTGGATACAGAAAGCAAAAAGGCGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTGATGACTACACCGCTACGAACCGCATTTTAATTTATGAGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACAAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACAGCGTGATAACTTATCATTGTGTGTCGTAACTGATATGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGCTCGCCTAAAGCCTTCACAGGTACCTATTGCTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCCATTCCATTGTTCGATTTCCATATAAGGGCGTTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACAGCAAGTTTACAGGCTCTTTGCCATACTCTGAGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACAGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAACGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGGCGACACACTAAAAGCGAAAGTAGAGGAACTACTGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCCTTTAAAGTTTCTGCCATTAATCTTTTGATTAATGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAACGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTTAACCATTTCTGTGAAGCTGAATAACATGATGAAGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCAATCGCTCAAGTATACATCCGCACTCTAGGGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACAAAAATTCCCGTACCCCGTGGCACTATTTTAAAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACCTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTGGTTTAAACATCAACTAATCCCTATTAGGGATTGAAACGATGGTGTAGCAATTTCGGTTGATTCTTTACCTTCTCAAATTGCAATTTCAACGAATCCCTATCAGGAATTCAAAA

>NC_019676|24|13|5566325-5566796|PILER-CR
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCATAAATGGATTATGTGAAAACTGCTCAGATGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ACGACCCGCTACACCATTACGCCCATCTGTACC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCATTCCATTGTTCGATTTCCATATAAGGGCGTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CAATCGCTCAAGTATACATCCGCACTCTAGGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAAAATTCCCGTACCCCGTGGCACTATTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG


>NC_019676|24|23|5566325-5568673|CRISPRCasFinder
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCATAAATGGATTATGTGAAAACTGCTCAGATGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ACGACCCGCTACACCATTACGCCCATCTGTACC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCATTCCATTGTTCGATTTCCATATAAGGGCGTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CAATCGCTCAAGTATACATCCGCACTCTAGGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAAAATTCCCGTACCCCGTGGCACTATTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GATGGTGTAGCAATTTCGGTTGATTCTTTACCTTCTCAA
ATTGCAATTTCAACGAATCCCTATCAGGAATTCAAAA

>NC_019676|24|13|5566325-5568673|CRT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCATAAATGGATTATGTGAAAACTGCTCAGATGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ACGACCCGCTACACCATTACGCCCATCTGTACC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCATTCCATTGTTCGATTTCCATATAAGGGCGTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CAATCGCTCAAGTATACATCCGCACTCTAGGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAAAATTCCCGTACCCCGTGGCACTATTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GATGGTGTAGCAATTTCGGTTGATTCTTTACCTTCTCAA
ATTGCAATTTCAACGAATCCCTATCAGGAATTCAAAA

>NC_019676|24|14|5566837-5568066|PILER-CR
	GCATAAATGGATTATGTGAAAACTGCTCAGATGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ACGACCCGCTACACCATTACGCCCATCTGTACC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCATTCCATTGTTCGATTTCCATATAAGGGCGTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CAATCGCTCAAGTATACATCCGCACTCTAGGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAAAATTCCCGTACCCCGTGGCACTATTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG


>NC_019676|24|15|5568105-5568597|PILER-CR
	GCATAAATGGATTATGTGAAAACTGCTCAGATGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ACGACCCGCTACACCATTACGCCCATCTGTACC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATAGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCATTCCATTGTTCGATTTCCATATAAGGGCGTT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAACTAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTCGTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CAATCGCTCAAGTATACATCCGCACTCTAGGG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	AAAAATTCCCGTACCCCGTGGCACTATTTTAAA
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC	CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG
GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115479.1\|5565299_5566082_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|224628
NC_019676.1\|WP_015115486.1\|5580620_5583389_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_019676.1\|WP_015115473.1\|5559332_5560571_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019676.1\|WP_015115481.1\|5569476_5572131_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_019676.1\|WP_015115488.1\|5586741_5587116_+\|response-regulator	unknown	unknown	gnl\|CDD\|381104
NC_019676.1\|WP_015115476.1\|5562817_5563264_+\|DUF1269-domain-containing-protein	unknown	unknown	gnl\|CDD\|227140
NC_019676.1\|WP_044501101.1\|5560625_5561111_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115472.1\|5557861_5559181_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_019676.1\|WP_015115471.1\|5557097_5557370_+\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NC_019676.1\|WP_015115478.1\|5564424_5565279_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115490.1\|5588650_5589898_-\|DUF4912-domain-containing-protein	unknown	unknown	gnl\|CDD\|225867
NC_019676.1\|WP_044501099.1\|5556080_5557031_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_019676.1\|WP_015115477.1\|5563299_5564253_-\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|224219
NC_019676.1\|WP_015115483.1\|5574166_5575894_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019676.1\|WP_015115484.1\|5576092_5579098_+\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|235047
NC_019676.1\|WP_015115489.1\|5587646_5588579_-\|phosphodiester-glycosidase-family-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115485.1\|5579383_5580364_+\|Mg2-transporter-protein-CorA	unknown	unknown	gnl\|CDD\|213362
NC_019676.1\|WP_015115482.1\|5572329_5573580_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NC_019676.1\|WP_015115475.1\|5561531_5562362_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_019676.1\|WP_015115487.1\|5583980_5586392_-\|response-regulator	unknown	unknown	gnl\|CDD\|226229

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115479.1\|5565299_5566082_+\|RDD-family-protein	gnl\|CDD\|224628	COG1714, COG1714, Predicted membrane protein/domain [Function unknown].	9.40731e-19
NC_019676.1\|WP_015115486.1\|5580620_5583389_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.81887e-92
NC_019676.1\|WP_015115473.1\|5559332_5560571_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.40689e-11
NC_019676.1\|WP_015115481.1\|5569476_5572131_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_019676.1\|WP_015115488.1\|5586741_5587116_+\|response-regulator	gnl\|CDD\|381104	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains. Thermotoga maritima RR468 (encoded by gene TM0468) is the cognate response regulator (RR) of the class I histidine kinase HK853 (product of gene TM0853). HK853/RR468 comprise a two-component system (TCS) that couples environmental stimuli to adaptive responses. This subfamily also includes Fremyella diplosiphon complementary adaptation response regulator homolog RcaF, a small RR that is involved in four-step phosphorelays of the complementary chromatic adaptation (CCA) system that occurs in many cyanobacteria. Both RR468 and RcaF are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.29665e-59
NC_019676.1\|WP_015115476.1\|5562817_5563264_+\|DUF1269-domain-containing-protein	gnl\|CDD\|227140	COG4803, COG4803, Predicted membrane protein [Function unknown].	1.10497e-31
NC_019676.1\|WP_015115472.1\|5557861_5559181_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.67848e-87
NC_019676.1\|WP_015115471.1\|5557097_5557370_+\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	4.63042e-07
NC_019676.1\|WP_015115490.1\|5588650_5589898_-\|DUF4912-domain-containing-protein	gnl\|CDD\|225867	COG3330, COG3330, Uncharacterized protein conserved in bacteria [Function unknown].	6.67064e-98
NC_019676.1\|WP_044501099.1\|5556080_5557031_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.63436e-107
NC_019676.1\|WP_015115477.1\|5563299_5564253_-\|stage-II-sporulation-protein-M	gnl\|CDD\|224219	COG1300, SpoIIM, Uncharacterized membrane protein [Function unknown].	1.38852e-52
NC_019676.1\|WP_015115483.1\|5574166_5575894_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	8.92442e-39
NC_019676.1\|WP_015115484.1\|5576092_5579098_+\|UPF0182-family-protein	gnl\|CDD\|235047	PRK02509, PRK02509, hypothetical protein; Provisional.	0
NC_019676.1\|WP_015115485.1\|5579383_5580364_+\|Mg2-transporter-protein-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	6.17922e-45
NC_019676.1\|WP_015115482.1\|5572329_5573580_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.72089e-80
NC_019676.1\|WP_015115475.1\|5561531_5562362_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.29499e-81
NC_019676.1\|WP_015115487.1\|5583980_5586392_-\|response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	5.38357e-74

>NC_019676.1|WP_015115479.1|5565299_5566082_+|RDD-family-protein
MQFFNRVKFRTPESVELEFTLAGIGSRAWALLIDYFVLAVILLVCIYTWISISGQLADILQDQDTVGSQVGLWLIAITFLLLFGIYVGYFVFFETIWQGQTPGKRFAKIRVVRDDGRPVGLAQATLRALLRPLDEFLFLGAFFIMFSRREKRLGDWAAGTIVIEAERAIASATFTISEQAKSLYTELLSIADLSQLLPDDFAIIREYLQRRGAMAAKSRVALASKLTQQVAAIINLAQLPEVPPDVFLEAIYLAYQHKEF
>NC_019676.1|WP_015115478.1|5564424_5565279_+|hypothetical-protein
MSGNLGSPTPIQPLSVGNVVSAGIRLYRSHLKDYFLLALRAYIWVFIPIYGWAKCYALISLISRLAFGELVNQPESVSSGERFVNSRKWQFLLMMLLMFLVGIGIIVGVVILFALFGVLSAALVGGVGQQGNPASYLLLIAIAIIITIAAFIGVLWLLTRFYLVDVPLAIEENIDATSTISRSWELTQGYVWRILFISFVTFLITIPIQIAVQIVLGIIQLVFSPLILREARFFTVVYSVLILALSFAGSAAIVPFWQTVKAVIYYDLRSRREGLGLQLRDHEI
>NC_019676.1|WP_015115477.1|5563299_5564253_-|stage-II-sporulation-protein-M
MNIQRWIARREPNWQRLDTLLKQVEKKGLKSVRAQEIRELASLYRSVAADLARARTQQIGQTLIQSLQNLTTRGYTQIYQGSRRQEWRAAAEFYRWGLPSVVQQTFPYIALATGLFLLGALVAWWYAWQDPTFMSLVVPQHLISQVRDEHKLWMGSIVGIEPLASSSIMINNLSVSFGAVAGGISAGAYTTYLMVFNGLLIGAVGTLVGQNNLAYPFWAFVFPHGALELPAIFFAGGAGLLLARAILFPGKYRRGDALKFYGSQAAQLVFGIVPMLIIAGTIEGFFSPNPNVPDPIKYLVGLGLFVFLVLYCNRKRR
>NC_019676.1|WP_015115476.1|5562817_5563264_+|DUF1269-domain-containing-protein
MSELVVISFNDKYKADEMLLELLKLEQEHLADLEDAVVITKNAQSKIRVKPCHDLVKPGDLSNELWGGIISATFFHRFLTIKESVFESSFLTEVEAALTPNSSAIFILINYADPEKIIAEFYRFEGKLIRTTLSKEQIEDLKKNPQKI
>NC_019676.1|WP_015115475.1|5561531_5562362_+|dienelactone-hydrolase-family-protein
MKEISRRQFIATATLTTGFVLAVQPVFAKVITTNTKGLTAGAVKIPVKDGEIPAYRAVPATGSNFPVVLVIQEIFGVHEHIQDICRRFAKLGYLAIAPELFVRQGDVSKLSNIDEIRQVVAKVPDAQVLSDLDATVNWAVKSAKGNTKRVGITGFCWGGRITWLYAAHNPQVKAGVAWYGRLVGNASELTPKHPVDIASTLKVPVLGLYGGKDTGIPLNTVEQMRDGLKSSSSKSQIIVYPDAPHAFFADYRPSYREQEAKEGWKKLQAWFKQHGV
>NC_019676.1|WP_044501101.1|5560625_5561111_-|hypothetical-protein
MRWPVVISAALLMPLSLNTPAISQSTVETAQRSAANNLQQLRFNRRLWNQQNIRNYRYTLSNSCFCVPEARGPVIITVKNGITTSITTTTGVPVSNPEFFERYKTIPKLFNVIADAIARRADNIDVQYKNQLGYPRQISIDYSFQQADEELYLTIENFQAL
>NC_019676.1|WP_015115473.1|5559332_5560571_+|tetratricopeptide-repeat-protein
MGSANNQGICWWFLAKFTRYSLTLLLSAVMLADAVAATPKNRGLQIGQQTTQQDTTRAAAERLFQEGRQFYQQGTAESLRQAIGKYQAALKLWQTLDEQSREAETLNHIGLVYDDLGETQEVLNYYNQALPILRAIKDRAGEATTLNNIGKVYLSLGEREEALKYFNQALLISRAVGDKKIAALTLNYLGVVYKSSGEPQEALKYYNQALPILRAVGDREQEASTLKNISLVYASLGEKQAAIKYLNQALSIGLAVEDRRIEARTLNDIGFVYASLGEPQAALKYFAQALPILRAVGEKRREATILHNIGGIHKALGEQEEALKYFNQALLIRRAVGDRKGEILTLSNMASLEYRRGNLQPAQTHIQAAIEIIEDLSAKITNAELRNAYSASVRGYYEFNNYLLMEMQKKHL
>NC_019676.1|WP_015115472.1|5557861_5559181_+|DUF58-domain-containing-protein
MIPSQRLYLFLISGVAIAPILSLFLTIPVSIAITLLFDVIILLLMIVDGLRVRPLRVQIKRELPQRLSIGRDNPVMLTVTAAKTDAIIQIRDYYPPEFGVSTPTLTATIPANTTQELTYTVHPRQRGEFPWGNIQVRQLGSWGLAWHNWQIPQSVSVKVYPDLIGLRSLSIRLTLQSSGSIRQSRRMGIGTEFAELRNYHTGDDLRFIDWKATARRNTGNTPPLVRVLEPEQEQTLMILLDRGRLMTAQVQGLQRFDWGLNATLSLALAALHRGDRVGVGVFDRQMHTWVSPERGQSHLGKLIDYLTPIQPVLLESDYLGAVTNVVQRQTRRALVVLITDLVDVTASTELLAALSRLAPRYLPFCVTLRDSQVDHLAHTFTQEVTAAYSRAVALDLLAQRQVAFAQLKQKGVLVLDAPANQITDQLVERYLQLKARNQL
>NC_019676.1|WP_015115471.1|5557097_5557370_+|DUF2281-domain-containing-protein
MTIKEQINQEIEKLPEPLLQEILDFIQFLQSKHQPENISANNQVSQPLTAEHNFTNSTAEDLLEFVGSWEGSDIRECLQLVHESRMQIEF
>NC_019676.1|WP_044501099.1|5556080_5557031_+|MoxR-family-ATPase
MSQNHSVFIDLDQNLNQIIVGQSSLIKQLLVALLAGGHVILEGVPGTGKTLLVKVLAQLIQGDFRRIQLTPDVLPSDITGTNIFDLNSRNFTLKKGPVFTEVLLADEINRTPPKTQAALLEAMEEMQVTLDGESLPLPDLFWVIATQNPLEFEGTYPLPEAQLDRFLFKLLVDYPDQAAEKQMLLNRQAGFAARRIDISSLKPVATVAEILEARKEVKQVQVSEKIIDYLLALVRASRQFPDLALGASPRAAGAWLQTSQAAAWLAGRDFVTPDDVKAVASPLLRHRLLLKAEAMLDGLQIDAIIASVINQVQVPR
>NC_019676.1|WP_015115481.1|5569476_5572131_+|leucine--tRNA-ligase
MTENLKAKSNDIALNKYSPAAIEEKWQKSWAELGLDNTLTENNKPKFYALSMFPYPSGSLHMGHVRNYTITDVIARLKRMQGYRVLHPMGWDAFGLPAENAAIDRGVPPAKWTYQNIAQMRQQLQRLGLSIDWESEVATCSPDYYKWTQWIFLQFLQAGLAYQREAAVNWDPIDQTVLANEQVIDGRSWRSGALVERKLLRQWFFKITDYAEELLNDLDKLTGWPERVKLMQANWIGKSVGAYLEFPIVGMDEKIGVYTTRPDTVFGVSYVVLAPEHPLTKRVTTKDQQAAVEAFITEVSHQSELERTAEDKPKRGVPTGGKAINPFTGDEVQILIADYVLYEYGTGAVMGVPAHDVRDFKFAKAYDLPIDVVIAAPEDVDGFDLTPASENEEVTQLIQIEYHEAYTEPGVLINSGQFTGMNSVEAKAAIVQYAQEQGFGKERIQYRLRDWLISRQRYWGAPIPVIHCPNCGIVPVPDKDLPVQLPEEVEFTGRGGSPLTQLESWVNVPCPTCGTPAKRETDTMDTFIDSSWYFLRFTDAKNEQQVFDPSKTNDWMPIDQYVGGIEHAILHLLYSRFFTKVLRDRGLLNFDEPFARLLTQGMVQGLTYMNPNKGGKDKWVPSHLVNPADPRDPQTGEPLQRLYATMSKSKGNGVAPEDVISKYGIDTARMFILFKAPPEKDLEWDEADVEGQFRFLNRVWRLVTDYAAAGVSRKQAQLADLSKPEKELRRAIHTAIKSVTEDLEDEYQFNTAISELMKLSNSLTDSDCKNSPIYAEGIQSLVALLAPFAPHIADELWHLLGNKNSVHTQTWPAFDAAALIADEITLVIQINGKKRADIQVPAQADKAELEKYARESEVVQRHLEGKEIKKVIVVPGKLVNFVVV
>NC_019676.1|WP_015115482.1|5572329_5573580_-|exonuclease-SbcCD-subunit-D
MIKILHLSDIHMGSGFSHGRINPATGLNTRLEDFVNTLSLCIDRALTDTVDLVIFGGDAFPDATPPPYIQEAFACQFRRLVNANIPTVLLVGNHDQHSQGLGGASLNIYRTLGVPGFVVGDTLTTHSIQTRNGKVQVITLPWLTRSTLMTRQETEGVSLAEVNQLLTDRLQVVIEGEIRRLDPDAPTILLAHLMADNATLGAERLLAVGKGFTLPLSLLTRPCFDYVALGHVHKHQNLNKHNNPPVIYPGSIERVDFSEEKEDKGYVMVELEKGNTTWEFCPLPVRSFRTIEVDISKAEDPQGAILKAIAKYDIQDAVVRLIYKLRSEQLDVIENAVLHTALKAAHTYTIQPELLSQLARPRVPELSASSSIDPMEALKTYLNNREDLKEIAATMLEAAEKLLSDDVEIWLEGAAD
>NC_019676.1|WP_015115483.1|5574166_5575894_+|pentapeptide-repeat-containing-protein
MLRKFTETTKSKNLKQFLITLTILTPLLMTIPVYASKPEHLKQLIDTNKCPKCDLSGADFSWKNFLRTDLSDSNLSGANLSNADLSGANLRNINLSKAKLSRANAFRADLVSANLSDADLSSTNLSGADLRNANLTRADLTNADLSGANLNGANLTDANMRGVRFDNVNLQGVNLNGVDLSNADLRNFNFRGVSLNGVNLSRVNLNGYNLRGVELKNANLSYANLQNADLSNARLNNADLQNANLYNANLQGADLIGSKLNSANLDNADLRGANLDIDSLPNNIRADAGDYSRWGNTLSSKGRYPNAIAYYNKAIELNSRDAQTYTSRGFAQSKLKNYQAAIADYNKAIEIDPNYGKAYSNRGLTRIEQNDYPSALTDFDQAIRLDSNNAEAYNGRATIRRMQKDYAAVITEASQAIRINPKFAAAYNNRGLARSALQDYQSAIQDYDKAIDNSSGWAWAYLNRGLARSAISQHKDATKDFDRAIEIDENYIEAYYQRSVARFNRKKYEDAIKDCDRIIQRDPNYAAAYENKGNALLALKKKPEAKLAFEQAMKLYSQKQDNPSVERVQQIATGL
>NC_019676.1|WP_015115484.1|5576092_5579098_+|UPF0182-family-protein
MLWKWCLRLFVILLGMWLFLDVASRLGAEILWFQEVSYLQVFLLRVVTKFSLVLFVAAFSAIYLWGNLELAQLLKYPSSLKIAQVKREEAGLSAELKNLLSPQYAKYDNSQITYTGILPIKLRWLLPIVVIFSLLIGLMLTHYSQIALAYWQSSVNQTSLPVISLFRLETIWQLSRQITAQVLYVGIVVGIAIAIVIYPRWLLTAIAGVFSVLFGWILYHNWAKILQYLHPTAFNYSEPLFNRDISFYIFSLPVWELMELWLMGLFLFGFVAVSLTYLLSADSLSQGIFPGFSSPQQRHLYGMGGLLMLVVALSYWLSRYELVYSRQGVSYGASYTDVQTQLPAYTVLCVLAVAIAFYLLGRTVVWRNKSPYRHWVFYGLGVYLLVAVTAGVVVPTVVQYLVVQPNELQREEPYIKRTIALTRQAFDLEAIDARTFNPEGTLTEADIKANDLTIRNIRLWDQRPLLETNRQLQQIRPYYRFPDADIDRYTLENTAISQRPSAPETPIVPTQEPTELTERRQVLIAARELDYSAVPQQAQTWVNQHLIYTHGYGFTLSPVNTVAPGGLPEYFVKDIAGTANGALTTSSNAIRDSIPIGLPRIYYGEITNTYVMTGTRVRELDYPSGSDNAYNIYDGIGGVSIGSAWRRWLFAIYLKDWQMLFTRDFLPETKVLFRRNINQRIRAIAPFLKFDSDPYLVAADPRIGSGFPGTENYLYWIVDAYTTSDRYPYSDPNNEGINYIRNSVKIVIDAYNGTINFYIADLKDPIIRTWANIFPKMFKPLSAMPATIRNHIRYPADFFQIQAERLMTYHMTDPQVFYNREDQWQIPNEIYGDKARPVEAYYLITSLPTVPFEEFILLLPYTPRQRTNLVAWLAARSDGDNYGKLLLYIFPKQRLIYGTEQIEARINQDPVISQQISLWNRQGSRAIQGNLLVIPIEESLLYVEPIYLEATQNSLPTLVRVVVAYENRIVMAQTLEQALQAIFQPEVTPEPAIVRPFDEGT
>NC_019676.1|WP_015115485.1|5579383_5580364_+|Mg2-transporter-protein-CorA
MLTLLTFSQNHLELFSSKDVDPILKKIDGSQNIWLRCIHFRDRTGIAKIIHHFQLDPSRIDMIFNHSLTGIDEDMEDCLFDGYEILTHQLKNREFQIVRGSIVLGRNFIITFEITEIKVLTILLNNIQKQNIDIQSWGVDYILYLIFKDILNNYHSVFDHISRQLDDLEDEVLANSGDETTYHKIAAMRQSTRSGRRNFQNLKSLLAMMNYEDFLWITLPVKTLFNQELVYQIDHLWQEYQALRAWMSELMEIQRDNIASKTSERINRLTILSTVFLPITFITGFYGMNFKYMPELEQPWAYPVVISVILLIVFSSIAFAKQQRWL
>NC_019676.1|WP_015115486.1|5580620_5583389_+|insulinase-family-protein
MQRRSKMFLAFLLSFLLSFIPFSGNVINAVTPVAVTPVSGLSFTQGVKKTVLDNGLTVLTKEVHTAPVVSVQVWYKVGSRNEGKGESGISHQLEHLMFKGTKERPVQFGRLFSALGSQFNAFTSYDETAYFGTVQRDKLQALLILEADRMKNALIGTEQLTSEKRVVISELQGYENSPSYRLNRAVMQAAFPNRAYGLSVGGTKADVEKFTVEQVRNYYQTYYSPDNATLVITGDFATEPVLKAVKESFGKLTKNQKSKINSQERAVSQKPKSSSPIVLKEPGSAALLHVVYPLPDIKHPDVPAIDVMDAILTGGRSSRLYQALVESGLASSVGGSAAELIEPGWYEIDATAAPGQKLEKIAQVLQTSLSKLQQQGVSVEELNRAKTLLQASFVLGNQDISSQASQLGYNQTVAGDYKYIERYLGAIAKVTPEDVQRVAKTYLVPAKQTIGFFEPTQPDGQAGTSSSGSGRTVENFSPGKPVDPAELAKYLPPATSYTVSNQQPLPQQLSLANGLRVLLLPDRSLPTINISGQIDAGTEFDGNQKAGLAILTAENLMNGTQTKNALTLAQTLEDRGASLEFSASREGVSIGGEGLSANLPILIQTLADVLQNANFPADQLELSRQRALTGLQVQLDDPSTLARRVFQQAIYPENHPFHSFSTETSLKNITRDDLLSFYRQHYRPDTTTLALVGDFDPVKVKDLLNQAFTKWQAEGKPPALNLPKVSLPKTSTRVNKVIPGKAEAVTYIGYNGISRKDPRFYAALVLNQILGGDTLSSRLGTEVRDRLGLTYGIYSGFAAGINPGPFLIEMQTAPTDAQKAIASTLALLKQLREQGITEAELNTAKRSIANSYPVELANPSEVASIILNNAILGLSPAEIREFPRRIQAVNMTQIQQVIKDLIQPENVVIVTAGPGDTASKEN
>NC_019676.1|WP_015115487.1|5583980_5586392_-|response-regulator
MKILIVEDDTNIIEILRVALSEKYYLVEVAPNGKKGLEQALATAYDLIVLDVSLSIIDGISIYQHLRNQGCHIPILLLTGKANIAKTITVLDAGADDYVLEPFNLEELLSKIRALLRRGMISRTPIIEFGALHLDPSSCQITYQGKILPLTAKEYALLELLLRNSQRIFSQSSLLEHLWSLNEIPSENTVRAYIKSLRSKLRKVGAKADLIETVYGFGYRLNTKELEVGNVQPKIMGTEKLIHSRKADEESEDRLLPTTHSSIEQRIKSQLAGVWERYQNKYRDRLAIIKQAVKYLLENKLTEDLRQQAQQQAHTLAGSLGTFGFDNATCLCQNIEKILKSTETLSQTQAEEIQILLLELQKILEQNPTLIPPQLDVQTAYLNQEYRLLIVDDDLELAQQVAAEATIAGIETVVAESISTARLAIACSRPDIVLLDLCFPQSPEDGFALLAELTALHPPIPVLVFTSQDSFAERVKVARMGGKGFLQKPVFPSEIMEAIASILQQSNTSSAKLLIVDDDPQILDILRTILQPWGFTLTLLDDPQNFWDTLEEFIPDMLILDLEMPNFSGIDLCQVVRNDPHWSNLPILFLSAHRDTQVVQRVFAAGADDYVTKPIVEPELLARVLCRLERSQIIRKFAEIDALTGITNRRKSAQELTRLLHLAERQSQPFYFVVLDLDRFKYINDQYGHDAGDQVLSQLGKLLKQSFRQEDVVARWGGEEFVIGLYGITQQQVVKRLNHLLDALRRLEFTTSNQENFTVTISGGVAEYPKDGHDVQTLYRAADTALYQAKAAGRDQIFLLTMN
>NC_019676.1|WP_015115488.1|5586741_5587116_+|response-regulator
MTKRILVIDDEDSVLEIVQISLESAANWDVITASSGSTGIEIAVSEQPDAIILDLVMPEMDGLTTFKKLQDNIATSHIPTVLLTAKAQMSKQAEFRNLGVSGVIIKPFMPLDLFDNICQILNWT
>NC_019676.1|WP_015115489.1|5587646_5588579_-|phosphodiester-glycosidase-family-protein
MWIKKIFLLSILSITINLLLACKEDTANSSTKAAKTCPGENPQFSIEFFKANNQGQKLAKGINHVIIFNPKSPKLDFKVNVGLSHKLYAKDKQGKFIRNYIPKQFNEIITDANSQLNGQRPLAAINADYIGTDDKPQGLNISRGVEYSGAFKNRRSSFGISGGRPQERIATLQAGRRSNNILNYNLVGGNGRFYRQGKFKDICQDLGEFACKQVTNRSMVATTSKGYVILLVNDLKANSAIEVSPVNQELLPDMFDDVLAGIARNNCLGKIQEGMLFDGGGSPGLYYNGKIYLENGGAIGSVFLIYKTSN
>NC_019676.1|WP_015115490.1|5588650_5589898_-|DUF4912-domain-containing-protein
MAKERPPLEEMTLRQLRKVASEYSVSRYSRMRKSQLLAAIQEVQRSKASLSPSRSLEAQETVEAAKFELGQEDRTGGSLADVDELLADLPGGYGESRIVLLPRDPQWAYTYWDIPNDHKEELRRQGGQQLALRIYDVTDISLEYQSPHSIQEYPVDELAREWYLPIPVSDRDYVIDIGYRTFDGRWLVLARSAQVHIPPVYPSDWIEDVFITVNFEEDLRGRTLYELVPPAKKLATTAGANGGNPIYDQIFGLVESAEAQRVAGSLFGSMQHVPGSVRPEQAISSYVFPSGVGMWAVPTTSGLNMSGVGMSGVGFSASAVPMRPRQFWLIADAELIVYGATEPDATVTIGGREIKLNPDGTFRFQMSFQDGLIDYPILAVAADGEQTRSIHMKFNRETPSRNTNTKEEAIPEWIF

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Crispr_ID: NC_019676_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_25

5764801-5764910

Orphan

A:N

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019676_25

>merge|NC_019676|25|5764801-5764910|CRISPRCasFinder
TTTTAAATCCCTAATAGGGATTATTTGAAATTGCAATCTCCCTTTTTTAATAGGAGAAGTAAATTCATAATGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATGT

>NC_019676|25|24|5764801-5764910|CRISPRCasFinder
TTTTAAATCCCTAATAGGGATTATTTGAAATTGCAATC	TCCCTTTTTTAATAGGAGAAGTAAATTCATAAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_172641498.1\|5770054_5771071_-\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001
NC_019676.1\|WP_015115633.1\|5752889_5758844_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019676.1\|WP_015115627.1\|5741428_5741734_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115632.1\|5751786_5752770_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_019676.1\|WP_015115631.1\|5746312_5751823_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019676.1\|WP_015115641.1\|5772796_5773354_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019676.1\|WP_015115628.1\|5742092_5742563_-\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|271319
NC_019676.1\|WP_015115636.1\|5762386_5762956_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115638.1\|5768345_5769818_-\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050
NC_019676.1\|WP_015115635.1\|5759736_5761986_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_019676.1\|WP_015115646.1\|5777087_5778269_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_019676.1\|WP_015110984.1\|5765022_5766168_+\|IS4-family-transposase	unknown	unknown	unknown
NC_019676.1\|WP_015115640.1\|5771364_5772648_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NC_019676.1\|WP_015115642.1\|5773366_5773831_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044500313.1\|5774142_5775258_-\|YjgP/YjgQ-family-permease	unknown	unknown	gnl\|CDD\|367632
NC_019676.1\|WP_015115629.1\|5742684_5744541_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_019676.1\|WP_015115644.1\|5775376_5776105_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NC_019676.1\|WP_015115637.1\|5763289_5764549_-\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NC_019676.1\|WP_015115645.1\|5776198_5776696_-\|OstA-family-protein	unknown	unknown	gnl\|CDD\|224845
NC_019676.1\|WP_015115630.1\|5744564_5745446_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270232

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115633.1\|5752889_5758844_-\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019676.1\|WP_172641498.1\|5770054_5771071_-\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	9.54633e-34
NC_019676.1\|WP_015115632.1\|5751786_5752770_-\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	1.40312e-05
NC_019676.1\|WP_015115631.1\|5746312_5751823_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019676.1\|WP_015115641.1\|5772796_5773354_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.5291e-36
NC_019676.1\|WP_015115628.1\|5742092_5742563_-\|NADAR-family-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	3.12383e-68
NC_019676.1\|WP_015115638.1\|5768345_5769818_-\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0
NC_019676.1\|WP_015115635.1\|5759736_5761986_-\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.62671e-38
NC_019676.1\|WP_015115646.1\|5777087_5778269_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.62542e-18
NC_019676.1\|WP_015115644.1\|5775376_5776105_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	2.93276e-145
NC_019676.1\|WP_015115640.1\|5771364_5772648_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_019676.1\|WP_044500313.1\|5774142_5775258_-\|YjgP/YjgQ-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	9.52976e-86
NC_019676.1\|WP_015115629.1\|5742684_5744541_-\|GHKL-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.80904e-51
NC_019676.1\|WP_015115637.1\|5763289_5764549_-\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.92352e-129
NC_019676.1\|WP_015115645.1\|5776198_5776696_-\|OstA-family-protein	gnl\|CDD\|224845	COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown].	1.3619e-29
NC_019676.1\|WP_015115630.1\|5744564_5745446_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270232	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily. This family includes alkylphosphonate binding domain PhnD. These domains are found in PhnD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.99724e-56

>NC_019676.1|WP_015115637.1|5763289_5764549_-|glycoside-hydrolase-family-10-protein
MNRLTKHWIIYLIALEFILCITVFSLPSFSFYSQPKNQQIVTEIRGVWLTNVASGVLFVPWGIDRAINQLSALHFNTIYPVVWNRGNTFYKSNIAKNIIGEEAEPVLNFMHGGQDVLTKIIKLAKPKGITVIPWFEYGFMTPPSSQLAKLYPNWLTIGREGVKSVKEVLPEDVNNGAVSKQAWLNPLHPEVQEFILGLILEVVSNYNIDGIQLDDHFGMPVQFGYDRFTVELYKQEHQGKSPPSNPFDQEWMRWRADKITAFMGRIYRSIKEIEPNAKLSLSPNAQAFAYKYYLQDWETWVKNGWVDELVLQVYRHNNNNFRTELQQSAVKLAQTKIPVVIGISTGTLRNPVRISQIKEQIDMVRDRSFSGISFFYWESLWGYIAPETPHKRRKVFQELFNTKAIRPLPVDETGSKLRL
>NC_019676.1|WP_015115636.1|5762386_5762956_-|hypothetical-protein
MFFTSTKTQFSFTLQWAIATVGGFLVSLCWIEVGEKPDVGVAQASLGGLAIAFPQSLIIRDHILSGRWVLVTLLAWATITAIGVGAVGWIIPSTQIFTLRLLWGTTLGAVSGFMIGLAQWTAIRKSVALSWRWIFISAISWAIAVPIGSIMGIVLLRFSRLFLGEVVGLAITWIVVAILTGINAYRLLR
>NC_019676.1|WP_015115635.1|5759736_5761986_-|GAF-domain-containing-protein
MNINPGESTIGLKQQLHSQILFDPELDKHSSSSEQFLLSIYNSVQTSIFIVDVLKDGDFCYVALNPTHERWLGISSENLKGKQPEDILSPVDAAKVRQHYADCVRFGKTISYEQCLQFQGVATWWSTTLTPLRDANSRIYRLIGTSSNITPVKQVAQAKEIQTAQEQLLEAIAQWIRESLDLDTLLHQLVKEVRHCLGCDRILVYSIQADETGVVIAESTVTANSCMGQKFPEPSLIGKYQERRGRGCIQIIEDIYTAGLHPSQVNLLESWPVRANLVVPIWSQQQLWGLITAQHCHQPHQWQEIEIDLLKQLATQIGIAVHQAKLHEQVQHLQTQLKLQKQQYQVQIQQAQNFQLLVRRITEQIRDHQPATLVMQTVTQELTQLLQLQSCYIEIYSACGTQTTVTYEYTTTAPEHQKLTRNVADLPAVYQPLLAKQHWQSLEIVPGWHPQLQVLTRLACPIFDDQGILGNLWLNRATQDMFDEREISLVQQVANECAIALRQAKNDSANQVQRQVLAQQERLQNEFLRTLSHELRTPITSISLAAQTLESVLTPGGILDIEIVPQLLQILQNECGRESKLISDLMQLSYLEAEPQIPTFITIDLQTWLPPIVESFRDLSHCQRQKLYLNINQQLPPLETDITDLERIITELLSYACKYTPSGEAISVSADFTVDAVQLKISNSGLDIPASEMPRIFEPFHRLMKNDPWTYSGTGLEMALVQKMVKHLGGSINVESVNSQTTFMIKFPR
>NC_019676.1|WP_015115633.1|5752889_5758844_-|AAA-family-ATPase
MLTIPGYQLSEELYNGLRTLVYRGYREADNKPVVIKLLKNPYPNFSELVQFRNQYTIAKNLHTPGIIETYSLEAYQNGYVIVMEDFGGISLKDYFSLKKPKSNELLPEFLEIAIALCNILDKLYRDGIIHKDIKPSNILINPTTKQVKLIDFSIASLLPRETQTLINPNVLEGTLAYISPEQTGRMNRLIDYRTDFYSLGVTFYELLTGELPFQSHDAMELLHCHIAKKPQEITNGEIPQVLSDIVMKLMEKNAEDRYQSTLGLKYDLENCLTQLLETGVIQSFPIALRDLCDRFIIPEKLYGREQEVATLLEAFKRVANGATEIMLVAGFSGIGKTAVVNEVHKPIMKQRGYFIQGKFDQFNRNIPFSAFVQAFRDLMGQLLTESDQQIQQWQDKIKEALGEHAQVIIEVIPELELIIGKHSPAPELSGSTAQNRFNLLLQKFIKLFSSQEHPLVIFLDDLQWIDSASLKLVQSLIGEANADHFLLIGAYRDNEVSAAHHLILALDEISNQGIKVNTITLKTLSEIKLNQLVADTLICRENLASPLSQLIYQKTQGNPFFATQFIKALHKDGLISFNYAQGYWQCDIAQINQRSLTNDVVEFMALQLQKLPESTQDVLKLAACIGNQFDLETLAIISQKSKTETAICLWGALKEGLILPQSDVYKFFMGAENPTVNQENLEIIPYKFLHDRIQQAAYSLIPAEHKQLTHLNIGQLLLINTPKYQKQEKIFAIVNQLNWGIKLLTTVEQRDELAQLNLNAAEKAKASTAYSAAWEYCTVSLKLLPENSWQSQYDFTLKIYETAIEIAYLSGDFAEMERLAKILLQQAKTILDTIKVYEVKSQALIAQNQPLVALNTVLQLLKLFGVEFPENPTPNDIGLALQETQLAYQCQEIGELINLQLMTDPIQLAIMRLISSILPAAFLSSPILYILLTFKEVKISVEYGNHSISSHSYACYAAILCGGMGDIENGYKFGQLALDLLNKLNSQELQCKVNSLVYGFIKHWRDAVSTTLIPLRDAYTVGLETGDLQFAGYAAVMYCAFTYFAGIEKELSELEQEVLAFHDSIHQIKQTTAVYYFQMLQQAIQDCQLGRSSSQYLQGNFFNEQAMLPKYIESNDRLGIFYLNFHKLYLNYLFEDYQQAVIDAGLTEQYLDGAVGFPYIPIFYFYDSLSRIAAYKENPQIELDKLLQKIAENQQKMKNWADKAPINYLHKFELVAAECHQLGGNQWEAIESYDRAIVGARKNGYVREEALANELLAKFYLKLNKEKAAQGYMQEAYYCYARWGTKAKTDDLEKRYPQLLKSIQQQQRFNFNPLETIATIAQTSTTNSTSITDAINFSSVLKAAQTISGTIELEELLGSLTQIILENSGAKKAALILPEEHGNWQVKAITWINHQANSQGEIESIINSQPMETCLDIPKRIINYVKHTQQTIIIDNCKTNISGIIGEYMLKHQPKSVLCIPIIQQRHLVGILYLENKLTRGVFNSDRLEVIQILSAQAAISLENARLYRESQLKAQQLQQSLQQQQTLFQVVKQIRESLNLDAIFDAVTQNIRQILNADRVGIYQFHLNVDYEYGEFIAEDVLPQFTSALAVKVQDHCFGENFAILYKQGRCCAIDDINTDAVIDCHREILAQFQVRASLVVPIMQDDELWGLLCIHQCDRPRHWEQFEIKFAQQVGAQMGVALQQTDLLIETQKQATQLEQTLQHLQQTQLQLIQNEKMSALGNLVAGVAHEMNNPLGFISASLEQAKPMLADIIQHLHLYQESSVTPNPNILKHAKEIDLDFSLADMPQMLTSMILACDRLKNISISLRTFSRADQDYKVLFNIHEGIDSTILILKHRLKANNQRPAILVITNYGDLPKLECFPGQLNQVFMNILANAIDALDESNIGRKFAEIQANTNQIKITTSVADQQVIISIADNAKGMSEAVKQKIFDHLFTTKGVGKGTGLGLAIARQIVEETHSGKLTCNSVLGEGTEFVLQLPL
>NC_019676.1|WP_015115632.1|5751786_5752770_-|alpha/beta-hydrolase
MNVRAFFQAATVEDSPSPYNSIHLKVFYPAQISGTEQEGNLGFVPVNSQESKFPVVILFNGINCSPEIYQWLAIKLSQRGFVVVTFSWIAENLPGVVALTPGVDLKMLPPSMYGKGPTASALPTLLRMLDSLQREGILAGLLDLDKIVLGGHSAGGRVAIESADPRFCSQVVAAFAYGAHTAANVHLGYEAGTILPLPDSLPLLIIGGTCDGVIAKSSHSYGVTWEQPTTPIMRTFQEAIAGGRDDSYLLLLEGANHFSITDPFDSTTGRPFLDFPATQPEEQLRNLIAEMIGLFIDAHVRYQTTALEALNQMLVSQNSLIGLFERK
>NC_019676.1|WP_015115631.1|5746312_5751823_+|AAA-family-ATPase
METVKAPIIPGYEISLQLYAGSRTQVYRAIRESDQLPVVIKLLTSEYPSFSELLQLRNQYTISKNLHITGIIQPLSLETYNNGYILVMADTGGISLREYIQSNTLTLAEFLTIAIELTTSLHELHQNRVIHKDIKPANILIHPQTKQVQLIDFSIASLLPKETQEIKSPNVLEGTLAYISPEQTGRMNRAIDYRSDYYSLGVTFYELLTGELPFDSNDPMELVHCHLAKIPHEVKSAEIPQVLSDIVLKLMAKNAEDRYQSALGLKYDLEICLTQLQDTGEITDFNICERDVCDRFLIPEKLYGREAEVNRLLQAFERVANGTSEMMLVAGFSGIGKTAVVNEVHKPITRQQGYFIKGKFDQFNRNIPFSAFVQALRDLMGQLLSESDAKLAQWRSQILAVLGENGQVLIEVIPELERLIGKQNPAPELSGTAAQNRFNLLFQKFIAVFTTLEHPLVLFLDDLQWADLASFQLIKLLMEDKNYLLLLGAYRDNEVSSAHPLMLTLEEMKKAGRTFNTITLAPLVEQDTNQLVADTLRCPTELTHPLTKLIERKTQGNPFFITQFLKVLYEDGEITFNYQQGYWECDITQILSLSLTDDVVEFVAQQLQKLPQETQDVLKLAACIGNSFDLTTLAIVFQQSLTDTATVLWKALQEGLILPQSELYKFYLSQTQANGNNDHIKNVTYRFLHDRIQQAAYCLIPKDQKAATHYQIGQLLLQHTDKAELEEKIFDLVNQFKLGIDLVTSPQEQKYLAELNLIAGRRAKMATAYPASVQYYAAARKLLAEDHWQESYNFMLAIYTEATEVAYLNTDFEQMEQLSKIVLNQVKNIWDSVPIYEIKIQACIAQNQLRLGLDTSVAILHKLGIDLPNQPTYQDIHQALEKTHLVLVGKTTAELIDLSLMTDTRAHAAMRILSSTFGAAYNGCPEMLPLIICEQVNLSIQQGNTALSAFAYASYGLILCAFTGVVETSYEFGQLALNLMEKLCTQQLRAKIEAVFNNCIRHWQDPLTSTLTPLLQGYQSGLETGDLEWAVWCIFGYSFHSYCAGKELTGLEQELATYSKAIAQLKQTTALNYQKTYHQATLNLLGCSETPFKLIGDVYNEDLMLPQHQEVNDRPAVYHAKINKLILCYLFGEYEQAQAEAAMAAQYLDGVPGLFVSVLLPFYDALAQLAMLHQVSEGEASASLERVQLHQAKLQQWANLVPDNHLHKFNLVEAERCRVLGKPYVAMELYDQAIAGAKKNNYIQEEALANELAAKFYLNWHKEKVAAGYMQEAYYCYAHWGAKAKTDDLEKRYPHLLRPILQKNTQNWNPLDTLASLSTANVVIHSSLTTSLSSSSSINATLDFAAILKASQTISSQIQLNELLHQLTQIILQNSGGDRCALILLNNQGEWLLRAIATPENTELFAEPLEGHPNLPVKLIQYVKNTQEIVVIDELKTNLPVIDEYLWQQQPKSLLCLPIINQGHLIGILYLKNHYTSGVFTCDRILILNFLCIQAAISLENARLYQKIENYSCILETEVEQKTQALNQKAQNLEQTLSKLQQTQAQLIHAEKMSSLGQLVAGIAHEINNPVSFIKGNITYTKGYFQDMMSLLKLYQQEYPEPSPAIKTKSQAIDIDFLFRDVNKILESMDVGSDRISQIVLSLRNFSRVDEAGIKAVDLHSGIESTLLILQHRLQGSENQPEIQVIKEYGNLPLANCYPSHLNQVFLNIINNSIDAMRDNPQCGEKPQIRIRTEVIDNQRLRIAIANTDSTIPLDIQNRIFEPFFTTKPVGRGTGLGLFVSYSIIQQHHGILTVRSQPTEETEFEIILPLILLAEKSIAEDENICHLRSNNPIKEF
>NC_019676.1|WP_015115630.1|5744564_5745446_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKRRKLLSYSLLYFASFMTACNSNKQITEISTTAQKTIKFTVTDVNNLKELEENYEELRNKLEEILDVKIEFFPVENRTAAASALVSGKLDIAFAGPSEYLILNARAKTIPIIGVKRPNYHSIIVVRADSKVKLLTQLKGKTIAMRKIGSTSGHIGPTKLLIDGGLDPKNDVKIAMLGNKGLQALNKGEVEAWATASDTYKNELSKEKLSEKDFSIIAKSSLLPNDVFVSSNQLASDFVTDMKTRILANQDKILQSIVLADKKFQGASLVAANDSDYNMIREVYQKMGEGSFL
>NC_019676.1|WP_015115629.1|5742684_5744541_-|GHKL-domain-containing-protein
MSHAKKNGVRKVLIWLVKLSNNWSIAQKITYGYIVTVGITCIGTTSGLLLAYNYETYAHKQLLLAYQQQALLKDLENAVTRVRLHPQRLVTVLDNSIWLEFEKNRFLDGISQVQQRLSELDKFAIIYQNNLLINSQDLHNLLSDYEKTTDIYNQLVKDFWKEIEEKNSLSKNNENYQQQILNFLNQEKKSNIPVEFEQLSDELTRLIGHAELQKQHASTSFNNAQKLQVKVILGSVLVSVVIAAILALYTSNLIAHPLKVVTNVARKITQESNFQLKANVSSKDEVGTLASSLNQLVEWVGDYTQELELARQTLEQRVEERTQELELARQTLEHRVEERTQKLQKTLQSLKETQSQLIQTEKMSSLGQMVAGIAHEINNPVSFIYGNIQHANEYVEYLLELIDLYQQQYPEPSYAIAEKIEDIDLTFISKDLSSLLSSMKMGAQRIREIVLSLRNFSRLDEADMKEVDIHEGIDNTLLILNHKITSEITVIKNYHTLPLFDCYPAQINQVFMNIISNAIDALIEQTNNPDKQIIIDTLKLDGNYIKISIKDNAYGIPLDIQHKLFDPFFTTKPVGKGTGLGLSICYQIVEKHQGKIEVISEIDKGTEFAITLPIKKTH
>NC_019676.1|WP_015115628.1|5742092_5742563_-|NADAR-family-protein
MTIYFYSTREQYGCFSNFSDHGFVLDELYWYTSEHYFQAQKFVGTFHLEQIRLVKTPKEAAKMGRERSRPLRQDWEQVKDDIMKKAVLCKFETHTDIQEILLNTGNTEIVENSPIDYYWGCGADGSGKNMLGIILMEVRDILRSKDGTKLGSFTVK
>NC_019676.1|WP_015115627.1|5741428_5741734_-|hypothetical-protein
MLLSKTKFKQYCKWFWDESLGGEYDAWGTSTYFLEIGNNRYPIRQIEVYENGNVLFYDSSHCADNYGMLCDKPIQEEDIQEFEINESEFEQVWNTKIPINR
>NC_019676.1|WP_015110984.1|5765022_5766168_+|IS4-family-transposase
MLPKFYQNCFQNVLTPAQYKMLEILLMLLQFHKTVTIEKLATVFPQPIKFESRRRSIQRFLLLPQLSIPYLWFPLLKRWVKNSLKRGEKRLIFAIDRTQWRSQNVFVISLIEQKRAIPVYWLLLPKKGCSNLGEQKKLIRPLLQLFKGYQMLVLGDREFHSIKLANWLHSKGIDFVLRQKQGTYIRQENQSHQRLQSLGLTPGISFFLTGIQATKQKGFANFNLAGYYKRKYRGVVEPAGWFLLTNLDSLKDAIKAFKLRSGIEAMFKDCKTGGYNLESTYADGQRLIALILLIAIAYTCAILVGRNSRSSGLQKYVGRLKELQRLHRRHSAFWIGLYGQLWVGAMEFWADLAHELMRLKPSKLPYFQQGLRAMTLIQSAL
>NC_019676.1|WP_015115638.1|5768345_5769818_-|glycolate-oxidase-subunit-GlcD
MLTQDKQQRNWQPIIKAFEAVLGKNGVIKRREELITYECDGLTSYRQRPAVVVLPKTTEQVAAVVKICNQYSVPFIARGSGTGLSGGALPLEDSVLIVTSLMRQILNVDLDNQRIVVQPGVINSWVTQTVSGAGFYYAPDPSSQIICSIGGNVAENSGGVHCLKYGVTTNHVFGLKIVTPEGEIVDLGGQIPETPGYDLTGIFVGSEGTLGIATEITLRILKTAESICVLLADFTSVEAAGASVSDIISAGIIPGGMEMMDNISINAVEDVVATNCYPRDATAILLVEIDGLEVEVAVLKQRITEICQQNGARNVTAASDPETRLKLWKGRKAAFAAAGHLSPDYYVQDGVIPRTQLPYVLQEIENLSQQYGYKIANVFHAGDGNLHPLVLYDNSVPGALEKVEELGGEILKLCVKVGGSLSGEHGIGSDKKCYMPEMFNSVDLESMQWVRQVFNPQGLANPEKIFPTPRTCGEAANAMNHKQFEGVERY
>NC_019676.1|WP_172641498.1|5770054_5771071_-|potassium-channel-protein
MAGAIALGGVFLIGTLWYRLVEGWAWEDAAYMTVITLATVGYGETHPLGSRGRLFTIALILLGVVNIGYIVNRFTEAIIEGYFQEGIRLRQQRRLMESLTGHYIICGFSRTGRQIAREFRAEAVPFVVIDSEIESVQKAQMEGYVVYQGDATLDDTLLHVGIERAICIVAALPSDAENLYTVLSAKTLNPEIRAIARASTEEALQKLQRGGADAVISPYITGGKRMAAAALRPQVLDFVDGILSGADRQLYMEEFLLDPAFSPFVGQTLQKAKLRSQTGALVLAIRRADGNLIGGPTGDTILMSGDTLICMGTAEQLRSLNQVLVPIGSQTLRKPKNQ
>NC_019676.1|WP_015115640.1|5771364_5772648_+|aspartate-aminotransferase-family-protein
MSFQTLVEEASIPPASGSVSSIPFDTDGFNEAVMSTYSRFPLALDKGAGCRVWDTQGREYLDFVAGIATCTLGHAHPAMVEAVTRQIQKLHHVSNLYYIPEQGELAKWIIQHSCADRVFFCNSGAEANEAAIKLARKYAHTVLEIDKPIILTANASFHGRTLATITATGQPKYQKYFDPLVPGFHYVPYNDITAVETAISELDEGDYQVAAILIEPLQGEGGVRPGDVAYFQKLRRICDETGILLIFDEVQVGMGRSGHLWGYEHLGVEPDIFTSAKGLGGGIPIGAMMSKKFCAVFQPGEHASTFGGNPFVCGVALSVCQTLEKENILQNVQERGEQLRAGLRAIATKYPHYISEVRGWGLINGMELTDDIALTAGEVVNAAIAEGLLLVPAGPKVVRFVPPLIVTNTEIDQALQALDKALAKITG
>NC_019676.1|WP_015115641.1|5772796_5773354_-|glutathione-S-transferase-family-protein
MLKLYGGAFSRAAIAKWYLEELQVPYEFVQLDMQAGAHRQPEYLQINPMGKVPAIVDGDFQLWESGAILLYLHEKYGKSPTSLEERAEIYQWVLFANSTLASGIFTESTREREVPLLLTPLNEIFQQQHFVLGDEFSVADVAVGSVLAYIPMMLKLDLSAYPAVLEYINRISERPAFKKGIGGKP
>NC_019676.1|WP_015115642.1|5773366_5773831_-|hypothetical-protein
MTTAISDQNTADLAADDYVVIGLATCFIKEDGEVYQVEVIEPIPSASLEALMKDIPTSYKLAYATTLGAVLDGDTPLLPAGFPTSAQFGEEFAQRVFAAARTYKRSENSKNLIPLGTTYSDFKYSIERKRVLNAARVVNKEDNVKQHSHTHKVL
>NC_019676.1|WP_044500313.1|5774142_5775258_-|YjgP/YjgQ-family-permease
MDRYLLSELLPPFLFGVGAFSSIGVTIDAVFDLIRKIVESGLPVGIAIQVFLLKMPYFIVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLPAVMLSLVVTGMTFVFNEQVTPTANYQANRILDSALKSDKPILKQQNIFYPEYRDFQEKDGTKSKILARLFYADQFDGKRMKGLTIIDRSTEGLNQVVVAESAQWNGSQSVWDFYNGTIYLVAPNGSYRNILRFEQQQLKLPRTPLSLVEKSRDYGEMNISESLEQLTVEKLGGDRQKIRKLQVRIQQKIALPFVCLVFGLVGAAMGTVPQRTGRGTSFGVCVIVIFTYYLMFFISGAIGQAGIISPFLGAWLPNFIFLVIGLFLLMRVARR
>NC_019676.1|WP_015115644.1|5775376_5776105_-|LPS-export-ABC-transporter-ATP-binding-protein
MKIVLENIHKSYGKRAIVNRVNLSVIQGEVVGLLGPNGAGKTTTFYIATGLERPNQGRVWLDTQDITGVAMHKRARLGIGYLAQEASIFRQLSVQDNILLVLEQTNVPKREWSKRLHTLLREFRLEKVAHSKGIQLSGGERRRTELARALAAGQEGPKFLLLDEPFAGVDPIAVAEIQEIVAKLRDRGMGILITDHNVRETLAITDRAYIMREGQILAAGTSDELYSNPLVRQYYLGDNFHI
>NC_019676.1|WP_015115645.1|5776198_5776696_-|OstA-family-protein
MKPCNQLLTSQIRRFGLALVLPTALLGALTFPSQTQTATAQSAAGNRPLTIRSDIQEYDAKSQIITARGNVQMLYPARQIQATSAQAQYFSKERRIDFSGNVYILQQGGNSIRAEKVTYLIDEGRFVALPQGNRQVESIYMVEDSEIGGQNTTPAPKTPNFKPAN
>NC_019676.1|WP_015115646.1|5777087_5778269_+|tyrosine-type-recombinase/integrase
MLLRAKKGSVTINAKSGKLRIVLPRNIGDGKQHYIYTGFDDTVKNRKKVQMVALQIETDIEDNCLDCTLDKYRTMLGVFRGQQRLQIIPKAPNLKQLWAKYCEFKQPQVSASTFNQDFLGSYAKAINNLPTNEIKDAIAIRDHLIQTYPPYTAKRYLTQFNACCKWAVKSKLTASNPFDGLTVDIKVKRWDTSKIDPFTLAERDAIIQAFEQHPLYIGYTNFVRFLFFTGCRIGEAIALQWKHINIDCTEIYFCESYSFHGRKETKTGVNRKFPCNEQLRAFLLSAREHSPTPEKLVFPALGGGEIKANSFTGVVWRGGVSHGVKTPGIVTQLVTEGKVSRYRPVYNTRHTFISLCLERGVSVQRIARWVGNSPEVIYKHYAGVLGDATVPEL

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Crispr_ID: NC_019676_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_26

5766301-5768107

Orphan

A:N

Consensus_repeat	Method
GTTT----------CAATCCCTAATAGGGATTATTTGAAATTGCAATT	PILER-CR
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CRT

24 spacers

The CRISPR arrays of NC_019676_26

>merge|NC_019676|26|5766301-5768107|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTTCAATATCAACTCGACGTATTCAAGATGTGAAGCATTGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATAGCCTTTAGATGCAAACTTAGCTAGAGAAATTAAGAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTAGGGAAAGAGTTTCCAGTTCCACAGCACTTACTCGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTTTAAAAATTTAGCCAATGAATCAAAAGGTGAAACTATGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTGTTTTTGAGTTTATTTGGTTGAATCTTCCTGAAAAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTACTTGCTAACTGCTGCGCTTCATCTAAGCTGATTTGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTACAGCAGAAATCAAAGAGTGTGTTTTTTGGGATCAAGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTAGGCGATCGCTTCTAGTTCATGCGTCTCTTTGAGTTTTGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCGCTCGGATTTAGCGGTTTCTTGTAATATCTGAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTATTTTTGGATGCAATGCAATGATGTTTGCTTTTCGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTATCTCCGGTTGACTGCGCTTGGAGGGTACGATGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTTGGCAACCCCTTGCCGCTATTTGCTCTCACCGAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTACCTCATATTCACCAAAATCAAATTCACTAGCACCAAAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTTGAGCGATAGCAACAAAGCGATCGTTAATACTTTTGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCTTTGGTATTCCGGCTACCGCTCTCATTTTCAAAATTCGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCCGTCTGTAGCGGTGCTGCCAATGTTGCTCCAGAAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCTTATTGCAAAGAAGTTGATGCCGTCCCTTCTGGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTATTGATTCTCTTTGTGTCCGCAAAGGAATTACAGCAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCACATCAGATATTGATTTCGCCAATTTGTGATTACGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTCCCACCAAATTATCTCCACCCGGCGTTGCAAAACGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTGATTTGTGAAGCGGCAGAAAAAATGATGCGAGAAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTTTTAATGTTATCAATTCGAGCAGAGTATACAGCAGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTCATTTCAGTTGCTGTTAGAGCCAACGTGAAATTTTGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATTGCACAAATTTTTGAAGCTTTGGAAAGTGCTGGTCTAGGTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT

>NC_019676|26|16|5766301-5768107|PILER-CR
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTCAATATCAACTCGACGTATTCAAGATGTGAAGCATTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATA	GCCTTTAGATGCAAACTTAGCTAGAGAAATTAAGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGGAAAGAGTTTCCAGTTCCACAGCACTTACTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAAAAATTTAGCCAATGAATCAAAAGGTGAAACTAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GTTTTTGAGTTTATTTGGTTGAATCTTCCTGAAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ACTTGCTAACTGCTGCGCTTCATCTAAGCTGATTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACAGCAGAAATCAAAGAGTGTGTTTTTTGGGATCAAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGCGATCGCTTCTAGTTCATGCGTCTCTTTGAGTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CGCTCGGATTTAGCGGTTTCTTGTAATATCTGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTTTTGGATGCAATGCAATGATGTTTGCTTTTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TATCTCCGGTTGACTGCGCTTGGAGGGTACGAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGGCAACCCCTTGCCGCTATTTGCTCTCACCGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACCTCATATTCACCAAAATCAAATTCACTAGCACCAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGAGCGATAGCAACAAAGCGATCGTTAATACTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTTGGTATTCCGGCTACCGCTCTCATTTTCAAAATTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CCGTCTGTAGCGGTGCTGCCAATGTTGCTCCAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTATTGCAAAGAAGTTGATGCCGTCCCTTCTGG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTGATTCTCTTTGTGTCCGCAAAGGAATTACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CACATCAGATATTGATTTCGCCAATTTGTGATTACG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TCCCACCAAATTATCTCCACCCGGCGTTGCAAAAC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TGATTTGTGAAGCGGCAGAAAAAATGATGCGAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAATGTTATCAATTCGAGCAGAGTATACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CATTTCAGTTGCTGTTAGAGCCAACGTGAAATTTTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GCACAAATTTTTGAAGCTTTGGAAAGTGCTGGTCTAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT

>NC_019676|26|25|5766301-5768107|CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTCAATATCAACTCGACGTATTCAAGATGTGAAGCATTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATA	GCCTTTAGATGCAAACTTAGCTAGAGAAATTAAGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGGAAAGAGTTTCCAGTTCCACAGCACTTACTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAAAAATTTAGCCAATGAATCAAAAGGTGAAACTAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GTTTTTGAGTTTATTTGGTTGAATCTTCCTGAAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ACTTGCTAACTGCTGCGCTTCATCTAAGCTGATTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACAGCAGAAATCAAAGAGTGTGTTTTTTGGGATCAAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGCGATCGCTTCTAGTTCATGCGTCTCTTTGAGTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CGCTCGGATTTAGCGGTTTCTTGTAATATCTGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTTTTGGATGCAATGCAATGATGTTTGCTTTTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TATCTCCGGTTGACTGCGCTTGGAGGGTACGAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGGCAACCCCTTGCCGCTATTTGCTCTCACCGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACCTCATATTCACCAAAATCAAATTCACTAGCACCAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGAGCGATAGCAACAAAGCGATCGTTAATACTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTTGGTATTCCGGCTACCGCTCTCATTTTCAAAATTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CCGTCTGTAGCGGTGCTGCCAATGTTGCTCCAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTATTGCAAAGAAGTTGATGCCGTCCCTTCTGG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTGATTCTCTTTGTGTCCGCAAAGGAATTACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CACATCAGATATTGATTTCGCCAATTTGTGATTACG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TCCCACCAAATTATCTCCACCCGGCGTTGCAAAAC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TGATTTGTGAAGCGGCAGAAAAAATGATGCGAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAATGTTATCAATTCGAGCAGAGTATACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CATTTCAGTTGCTGTTAGAGCCAACGTGAAATTTTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GCACAAATTTTTGAAGCTTTGGAAAGTGCTGGTCTAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT

>NC_019676|26|14|5766301-5768107|CRT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTCAATATCAACTCGACGTATTCAAGATGTGAAGCATTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATA	GCCTTTAGATGCAAACTTAGCTAGAGAAATTAAGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGGAAAGAGTTTCCAGTTCCACAGCACTTACTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAAAAATTTAGCCAATGAATCAAAAGGTGAAACTAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GTTTTTGAGTTTATTTGGTTGAATCTTCCTGAAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ACTTGCTAACTGCTGCGCTTCATCTAAGCTGATTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACAGCAGAAATCAAAGAGTGTGTTTTTTGGGATCAAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	AGGCGATCGCTTCTAGTTCATGCGTCTCTTTGAGTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CGCTCGGATTTAGCGGTTTCTTGTAATATCTGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTTTTGGATGCAATGCAATGATGTTTGCTTTTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TATCTCCGGTTGACTGCGCTTGGAGGGTACGAT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGGCAACCCCTTGCCGCTATTTGCTCTCACCGA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TACCTCATATTCACCAAAATCAAATTCACTAGCACCAAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTGAGCGATAGCAACAAAGCGATCGTTAATACTTTT
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTTGGTATTCCGGCTACCGCTCTCATTTTCAAAATTC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CCGTCTGTAGCGGTGCTGCCAATGTTGCTCCAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CTTATTGCAAAGAAGTTGATGCCGTCCCTTCTGG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	ATTGATTCTCTTTGTGTCCGCAAAGGAATTACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CACATCAGATATTGATTTCGCCAATTTGTGATTACG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TCCCACCAAATTATCTCCACCCGGCGTTGCAAAAC
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TGATTTGTGAAGCGGCAGAAAAAATGATGCGAGAA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	TTTAATGTTATCAATTCGAGCAGAGTATACAGCA
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	CATTTCAGTTGCTGTTAGAGCCAACGTGAAATTTTG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT	GCACAAATTTTTGAAGCTTTGGAAAGTGCTGGTCTAG
GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115633.1\|5752889_5758844_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019676.1\|WP_015110984.1\|5765022_5766168_+\|IS4-family-transposase	unknown	unknown	unknown
NC_019676.1\|WP_015115632.1\|5751786_5752770_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_019676.1\|WP_015115631.1\|5746312_5751823_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019676.1\|WP_015115641.1\|5772796_5773354_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019676.1\|WP_015115628.1\|5742092_5742563_-\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|271319
NC_019676.1\|WP_015115636.1\|5762386_5762956_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115638.1\|5768345_5769818_-\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050
NC_019676.1\|WP_015115635.1\|5759736_5761986_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_019676.1\|WP_015115646.1\|5777087_5778269_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_019676.1\|WP_172641498.1\|5770054_5771071_-\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001
NC_019676.1\|WP_015115640.1\|5771364_5772648_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NC_019676.1\|WP_015115642.1\|5773366_5773831_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_044500313.1\|5774142_5775258_-\|YjgP/YjgQ-family-permease	unknown	unknown	gnl\|CDD\|367632
NC_019676.1\|WP_015115629.1\|5742684_5744541_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_019676.1\|WP_015115644.1\|5775376_5776105_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NC_019676.1\|WP_015115637.1\|5763289_5764549_-\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NC_019676.1\|WP_015115645.1\|5776198_5776696_-\|OstA-family-protein	unknown	unknown	gnl\|CDD\|224845
NC_019676.1\|WP_015115630.1\|5744564_5745446_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270232
NC_019676.1\|WP_015115647.1\|5778556_5778712_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115633.1\|5752889_5758844_-\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019676.1\|WP_172641498.1\|5770054_5771071_-\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	9.54633e-34
NC_019676.1\|WP_015115632.1\|5751786_5752770_-\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	1.40312e-05
NC_019676.1\|WP_015115631.1\|5746312_5751823_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019676.1\|WP_015115641.1\|5772796_5773354_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.5291e-36
NC_019676.1\|WP_015115628.1\|5742092_5742563_-\|NADAR-family-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	3.12383e-68
NC_019676.1\|WP_015115638.1\|5768345_5769818_-\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0
NC_019676.1\|WP_015115635.1\|5759736_5761986_-\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.62671e-38
NC_019676.1\|WP_015115646.1\|5777087_5778269_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.62542e-18
NC_019676.1\|WP_015115644.1\|5775376_5776105_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	2.93276e-145
NC_019676.1\|WP_015115640.1\|5771364_5772648_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_019676.1\|WP_044500313.1\|5774142_5775258_-\|YjgP/YjgQ-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	9.52976e-86
NC_019676.1\|WP_015115629.1\|5742684_5744541_-\|GHKL-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.80904e-51
NC_019676.1\|WP_015115637.1\|5763289_5764549_-\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.92352e-129
NC_019676.1\|WP_015115645.1\|5776198_5776696_-\|OstA-family-protein	gnl\|CDD\|224845	COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown].	1.3619e-29
NC_019676.1\|WP_015115630.1\|5744564_5745446_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270232	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily. This family includes alkylphosphonate binding domain PhnD. These domains are found in PhnD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.99724e-56

>NC_019676.1|WP_015110984.1|5765022_5766168_+|IS4-family-transposase
MLPKFYQNCFQNVLTPAQYKMLEILLMLLQFHKTVTIEKLATVFPQPIKFESRRRSIQRFLLLPQLSIPYLWFPLLKRWVKNSLKRGEKRLIFAIDRTQWRSQNVFVISLIEQKRAIPVYWLLLPKKGCSNLGEQKKLIRPLLQLFKGYQMLVLGDREFHSIKLANWLHSKGIDFVLRQKQGTYIRQENQSHQRLQSLGLTPGISFFLTGIQATKQKGFANFNLAGYYKRKYRGVVEPAGWFLLTNLDSLKDAIKAFKLRSGIEAMFKDCKTGGYNLESTYADGQRLIALILLIAIAYTCAILVGRNSRSSGLQKYVGRLKELQRLHRRHSAFWIGLYGQLWVGAMEFWADLAHELMRLKPSKLPYFQQGLRAMTLIQSAL
>NC_019676.1|WP_015115637.1|5763289_5764549_-|glycoside-hydrolase-family-10-protein
MNRLTKHWIIYLIALEFILCITVFSLPSFSFYSQPKNQQIVTEIRGVWLTNVASGVLFVPWGIDRAINQLSALHFNTIYPVVWNRGNTFYKSNIAKNIIGEEAEPVLNFMHGGQDVLTKIIKLAKPKGITVIPWFEYGFMTPPSSQLAKLYPNWLTIGREGVKSVKEVLPEDVNNGAVSKQAWLNPLHPEVQEFILGLILEVVSNYNIDGIQLDDHFGMPVQFGYDRFTVELYKQEHQGKSPPSNPFDQEWMRWRADKITAFMGRIYRSIKEIEPNAKLSLSPNAQAFAYKYYLQDWETWVKNGWVDELVLQVYRHNNNNFRTELQQSAVKLAQTKIPVVIGISTGTLRNPVRISQIKEQIDMVRDRSFSGISFFYWESLWGYIAPETPHKRRKVFQELFNTKAIRPLPVDETGSKLRL
>NC_019676.1|WP_015115636.1|5762386_5762956_-|hypothetical-protein
MFFTSTKTQFSFTLQWAIATVGGFLVSLCWIEVGEKPDVGVAQASLGGLAIAFPQSLIIRDHILSGRWVLVTLLAWATITAIGVGAVGWIIPSTQIFTLRLLWGTTLGAVSGFMIGLAQWTAIRKSVALSWRWIFISAISWAIAVPIGSIMGIVLLRFSRLFLGEVVGLAITWIVVAILTGINAYRLLR
>NC_019676.1|WP_015115635.1|5759736_5761986_-|GAF-domain-containing-protein
MNINPGESTIGLKQQLHSQILFDPELDKHSSSSEQFLLSIYNSVQTSIFIVDVLKDGDFCYVALNPTHERWLGISSENLKGKQPEDILSPVDAAKVRQHYADCVRFGKTISYEQCLQFQGVATWWSTTLTPLRDANSRIYRLIGTSSNITPVKQVAQAKEIQTAQEQLLEAIAQWIRESLDLDTLLHQLVKEVRHCLGCDRILVYSIQADETGVVIAESTVTANSCMGQKFPEPSLIGKYQERRGRGCIQIIEDIYTAGLHPSQVNLLESWPVRANLVVPIWSQQQLWGLITAQHCHQPHQWQEIEIDLLKQLATQIGIAVHQAKLHEQVQHLQTQLKLQKQQYQVQIQQAQNFQLLVRRITEQIRDHQPATLVMQTVTQELTQLLQLQSCYIEIYSACGTQTTVTYEYTTTAPEHQKLTRNVADLPAVYQPLLAKQHWQSLEIVPGWHPQLQVLTRLACPIFDDQGILGNLWLNRATQDMFDEREISLVQQVANECAIALRQAKNDSANQVQRQVLAQQERLQNEFLRTLSHELRTPITSISLAAQTLESVLTPGGILDIEIVPQLLQILQNECGRESKLISDLMQLSYLEAEPQIPTFITIDLQTWLPPIVESFRDLSHCQRQKLYLNINQQLPPLETDITDLERIITELLSYACKYTPSGEAISVSADFTVDAVQLKISNSGLDIPASEMPRIFEPFHRLMKNDPWTYSGTGLEMALVQKMVKHLGGSINVESVNSQTTFMIKFPR
>NC_019676.1|WP_015115633.1|5752889_5758844_-|AAA-family-ATPase
MLTIPGYQLSEELYNGLRTLVYRGYREADNKPVVIKLLKNPYPNFSELVQFRNQYTIAKNLHTPGIIETYSLEAYQNGYVIVMEDFGGISLKDYFSLKKPKSNELLPEFLEIAIALCNILDKLYRDGIIHKDIKPSNILINPTTKQVKLIDFSIASLLPRETQTLINPNVLEGTLAYISPEQTGRMNRLIDYRTDFYSLGVTFYELLTGELPFQSHDAMELLHCHIAKKPQEITNGEIPQVLSDIVMKLMEKNAEDRYQSTLGLKYDLENCLTQLLETGVIQSFPIALRDLCDRFIIPEKLYGREQEVATLLEAFKRVANGATEIMLVAGFSGIGKTAVVNEVHKPIMKQRGYFIQGKFDQFNRNIPFSAFVQAFRDLMGQLLTESDQQIQQWQDKIKEALGEHAQVIIEVIPELELIIGKHSPAPELSGSTAQNRFNLLLQKFIKLFSSQEHPLVIFLDDLQWIDSASLKLVQSLIGEANADHFLLIGAYRDNEVSAAHHLILALDEISNQGIKVNTITLKTLSEIKLNQLVADTLICRENLASPLSQLIYQKTQGNPFFATQFIKALHKDGLISFNYAQGYWQCDIAQINQRSLTNDVVEFMALQLQKLPESTQDVLKLAACIGNQFDLETLAIISQKSKTETAICLWGALKEGLILPQSDVYKFFMGAENPTVNQENLEIIPYKFLHDRIQQAAYSLIPAEHKQLTHLNIGQLLLINTPKYQKQEKIFAIVNQLNWGIKLLTTVEQRDELAQLNLNAAEKAKASTAYSAAWEYCTVSLKLLPENSWQSQYDFTLKIYETAIEIAYLSGDFAEMERLAKILLQQAKTILDTIKVYEVKSQALIAQNQPLVALNTVLQLLKLFGVEFPENPTPNDIGLALQETQLAYQCQEIGELINLQLMTDPIQLAIMRLISSILPAAFLSSPILYILLTFKEVKISVEYGNHSISSHSYACYAAILCGGMGDIENGYKFGQLALDLLNKLNSQELQCKVNSLVYGFIKHWRDAVSTTLIPLRDAYTVGLETGDLQFAGYAAVMYCAFTYFAGIEKELSELEQEVLAFHDSIHQIKQTTAVYYFQMLQQAIQDCQLGRSSSQYLQGNFFNEQAMLPKYIESNDRLGIFYLNFHKLYLNYLFEDYQQAVIDAGLTEQYLDGAVGFPYIPIFYFYDSLSRIAAYKENPQIELDKLLQKIAENQQKMKNWADKAPINYLHKFELVAAECHQLGGNQWEAIESYDRAIVGARKNGYVREEALANELLAKFYLKLNKEKAAQGYMQEAYYCYARWGTKAKTDDLEKRYPQLLKSIQQQQRFNFNPLETIATIAQTSTTNSTSITDAINFSSVLKAAQTISGTIELEELLGSLTQIILENSGAKKAALILPEEHGNWQVKAITWINHQANSQGEIESIINSQPMETCLDIPKRIINYVKHTQQTIIIDNCKTNISGIIGEYMLKHQPKSVLCIPIIQQRHLVGILYLENKLTRGVFNSDRLEVIQILSAQAAISLENARLYRESQLKAQQLQQSLQQQQTLFQVVKQIRESLNLDAIFDAVTQNIRQILNADRVGIYQFHLNVDYEYGEFIAEDVLPQFTSALAVKVQDHCFGENFAILYKQGRCCAIDDINTDAVIDCHREILAQFQVRASLVVPIMQDDELWGLLCIHQCDRPRHWEQFEIKFAQQVGAQMGVALQQTDLLIETQKQATQLEQTLQHLQQTQLQLIQNEKMSALGNLVAGVAHEMNNPLGFISASLEQAKPMLADIIQHLHLYQESSVTPNPNILKHAKEIDLDFSLADMPQMLTSMILACDRLKNISISLRTFSRADQDYKVLFNIHEGIDSTILILKHRLKANNQRPAILVITNYGDLPKLECFPGQLNQVFMNILANAIDALDESNIGRKFAEIQANTNQIKITTSVADQQVIISIADNAKGMSEAVKQKIFDHLFTTKGVGKGTGLGLAIARQIVEETHSGKLTCNSVLGEGTEFVLQLPL
>NC_019676.1|WP_015115632.1|5751786_5752770_-|alpha/beta-hydrolase
MNVRAFFQAATVEDSPSPYNSIHLKVFYPAQISGTEQEGNLGFVPVNSQESKFPVVILFNGINCSPEIYQWLAIKLSQRGFVVVTFSWIAENLPGVVALTPGVDLKMLPPSMYGKGPTASALPTLLRMLDSLQREGILAGLLDLDKIVLGGHSAGGRVAIESADPRFCSQVVAAFAYGAHTAANVHLGYEAGTILPLPDSLPLLIIGGTCDGVIAKSSHSYGVTWEQPTTPIMRTFQEAIAGGRDDSYLLLLEGANHFSITDPFDSTTGRPFLDFPATQPEEQLRNLIAEMIGLFIDAHVRYQTTALEALNQMLVSQNSLIGLFERK
>NC_019676.1|WP_015115631.1|5746312_5751823_+|AAA-family-ATPase
METVKAPIIPGYEISLQLYAGSRTQVYRAIRESDQLPVVIKLLTSEYPSFSELLQLRNQYTISKNLHITGIIQPLSLETYNNGYILVMADTGGISLREYIQSNTLTLAEFLTIAIELTTSLHELHQNRVIHKDIKPANILIHPQTKQVQLIDFSIASLLPKETQEIKSPNVLEGTLAYISPEQTGRMNRAIDYRSDYYSLGVTFYELLTGELPFDSNDPMELVHCHLAKIPHEVKSAEIPQVLSDIVLKLMAKNAEDRYQSALGLKYDLEICLTQLQDTGEITDFNICERDVCDRFLIPEKLYGREAEVNRLLQAFERVANGTSEMMLVAGFSGIGKTAVVNEVHKPITRQQGYFIKGKFDQFNRNIPFSAFVQALRDLMGQLLSESDAKLAQWRSQILAVLGENGQVLIEVIPELERLIGKQNPAPELSGTAAQNRFNLLFQKFIAVFTTLEHPLVLFLDDLQWADLASFQLIKLLMEDKNYLLLLGAYRDNEVSSAHPLMLTLEEMKKAGRTFNTITLAPLVEQDTNQLVADTLRCPTELTHPLTKLIERKTQGNPFFITQFLKVLYEDGEITFNYQQGYWECDITQILSLSLTDDVVEFVAQQLQKLPQETQDVLKLAACIGNSFDLTTLAIVFQQSLTDTATVLWKALQEGLILPQSELYKFYLSQTQANGNNDHIKNVTYRFLHDRIQQAAYCLIPKDQKAATHYQIGQLLLQHTDKAELEEKIFDLVNQFKLGIDLVTSPQEQKYLAELNLIAGRRAKMATAYPASVQYYAAARKLLAEDHWQESYNFMLAIYTEATEVAYLNTDFEQMEQLSKIVLNQVKNIWDSVPIYEIKIQACIAQNQLRLGLDTSVAILHKLGIDLPNQPTYQDIHQALEKTHLVLVGKTTAELIDLSLMTDTRAHAAMRILSSTFGAAYNGCPEMLPLIICEQVNLSIQQGNTALSAFAYASYGLILCAFTGVVETSYEFGQLALNLMEKLCTQQLRAKIEAVFNNCIRHWQDPLTSTLTPLLQGYQSGLETGDLEWAVWCIFGYSFHSYCAGKELTGLEQELATYSKAIAQLKQTTALNYQKTYHQATLNLLGCSETPFKLIGDVYNEDLMLPQHQEVNDRPAVYHAKINKLILCYLFGEYEQAQAEAAMAAQYLDGVPGLFVSVLLPFYDALAQLAMLHQVSEGEASASLERVQLHQAKLQQWANLVPDNHLHKFNLVEAERCRVLGKPYVAMELYDQAIAGAKKNNYIQEEALANELAAKFYLNWHKEKVAAGYMQEAYYCYAHWGAKAKTDDLEKRYPHLLRPILQKNTQNWNPLDTLASLSTANVVIHSSLTTSLSSSSSINATLDFAAILKASQTISSQIQLNELLHQLTQIILQNSGGDRCALILLNNQGEWLLRAIATPENTELFAEPLEGHPNLPVKLIQYVKNTQEIVVIDELKTNLPVIDEYLWQQQPKSLLCLPIINQGHLIGILYLKNHYTSGVFTCDRILILNFLCIQAAISLENARLYQKIENYSCILETEVEQKTQALNQKAQNLEQTLSKLQQTQAQLIHAEKMSSLGQLVAGIAHEINNPVSFIKGNITYTKGYFQDMMSLLKLYQQEYPEPSPAIKTKSQAIDIDFLFRDVNKILESMDVGSDRISQIVLSLRNFSRVDEAGIKAVDLHSGIESTLLILQHRLQGSENQPEIQVIKEYGNLPLANCYPSHLNQVFLNIINNSIDAMRDNPQCGEKPQIRIRTEVIDNQRLRIAIANTDSTIPLDIQNRIFEPFFTTKPVGRGTGLGLFVSYSIIQQHHGILTVRSQPTEETEFEIILPLILLAEKSIAEDENICHLRSNNPIKEF
>NC_019676.1|WP_015115630.1|5744564_5745446_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKRRKLLSYSLLYFASFMTACNSNKQITEISTTAQKTIKFTVTDVNNLKELEENYEELRNKLEEILDVKIEFFPVENRTAAASALVSGKLDIAFAGPSEYLILNARAKTIPIIGVKRPNYHSIIVVRADSKVKLLTQLKGKTIAMRKIGSTSGHIGPTKLLIDGGLDPKNDVKIAMLGNKGLQALNKGEVEAWATASDTYKNELSKEKLSEKDFSIIAKSSLLPNDVFVSSNQLASDFVTDMKTRILANQDKILQSIVLADKKFQGASLVAANDSDYNMIREVYQKMGEGSFL
>NC_019676.1|WP_015115629.1|5742684_5744541_-|GHKL-domain-containing-protein
MSHAKKNGVRKVLIWLVKLSNNWSIAQKITYGYIVTVGITCIGTTSGLLLAYNYETYAHKQLLLAYQQQALLKDLENAVTRVRLHPQRLVTVLDNSIWLEFEKNRFLDGISQVQQRLSELDKFAIIYQNNLLINSQDLHNLLSDYEKTTDIYNQLVKDFWKEIEEKNSLSKNNENYQQQILNFLNQEKKSNIPVEFEQLSDELTRLIGHAELQKQHASTSFNNAQKLQVKVILGSVLVSVVIAAILALYTSNLIAHPLKVVTNVARKITQESNFQLKANVSSKDEVGTLASSLNQLVEWVGDYTQELELARQTLEQRVEERTQELELARQTLEHRVEERTQKLQKTLQSLKETQSQLIQTEKMSSLGQMVAGIAHEINNPVSFIYGNIQHANEYVEYLLELIDLYQQQYPEPSYAIAEKIEDIDLTFISKDLSSLLSSMKMGAQRIREIVLSLRNFSRLDEADMKEVDIHEGIDNTLLILNHKITSEITVIKNYHTLPLFDCYPAQINQVFMNIISNAIDALIEQTNNPDKQIIIDTLKLDGNYIKISIKDNAYGIPLDIQHKLFDPFFTTKPVGKGTGLGLSICYQIVEKHQGKIEVISEIDKGTEFAITLPIKKTH
>NC_019676.1|WP_015115628.1|5742092_5742563_-|NADAR-family-protein
MTIYFYSTREQYGCFSNFSDHGFVLDELYWYTSEHYFQAQKFVGTFHLEQIRLVKTPKEAAKMGRERSRPLRQDWEQVKDDIMKKAVLCKFETHTDIQEILLNTGNTEIVENSPIDYYWGCGADGSGKNMLGIILMEVRDILRSKDGTKLGSFTVK
>NC_019676.1|WP_015115638.1|5768345_5769818_-|glycolate-oxidase-subunit-GlcD
MLTQDKQQRNWQPIIKAFEAVLGKNGVIKRREELITYECDGLTSYRQRPAVVVLPKTTEQVAAVVKICNQYSVPFIARGSGTGLSGGALPLEDSVLIVTSLMRQILNVDLDNQRIVVQPGVINSWVTQTVSGAGFYYAPDPSSQIICSIGGNVAENSGGVHCLKYGVTTNHVFGLKIVTPEGEIVDLGGQIPETPGYDLTGIFVGSEGTLGIATEITLRILKTAESICVLLADFTSVEAAGASVSDIISAGIIPGGMEMMDNISINAVEDVVATNCYPRDATAILLVEIDGLEVEVAVLKQRITEICQQNGARNVTAASDPETRLKLWKGRKAAFAAAGHLSPDYYVQDGVIPRTQLPYVLQEIENLSQQYGYKIANVFHAGDGNLHPLVLYDNSVPGALEKVEELGGEILKLCVKVGGSLSGEHGIGSDKKCYMPEMFNSVDLESMQWVRQVFNPQGLANPEKIFPTPRTCGEAANAMNHKQFEGVERY
>NC_019676.1|WP_172641498.1|5770054_5771071_-|potassium-channel-protein
MAGAIALGGVFLIGTLWYRLVEGWAWEDAAYMTVITLATVGYGETHPLGSRGRLFTIALILLGVVNIGYIVNRFTEAIIEGYFQEGIRLRQQRRLMESLTGHYIICGFSRTGRQIAREFRAEAVPFVVIDSEIESVQKAQMEGYVVYQGDATLDDTLLHVGIERAICIVAALPSDAENLYTVLSAKTLNPEIRAIARASTEEALQKLQRGGADAVISPYITGGKRMAAAALRPQVLDFVDGILSGADRQLYMEEFLLDPAFSPFVGQTLQKAKLRSQTGALVLAIRRADGNLIGGPTGDTILMSGDTLICMGTAEQLRSLNQVLVPIGSQTLRKPKNQ
>NC_019676.1|WP_015115640.1|5771364_5772648_+|aspartate-aminotransferase-family-protein
MSFQTLVEEASIPPASGSVSSIPFDTDGFNEAVMSTYSRFPLALDKGAGCRVWDTQGREYLDFVAGIATCTLGHAHPAMVEAVTRQIQKLHHVSNLYYIPEQGELAKWIIQHSCADRVFFCNSGAEANEAAIKLARKYAHTVLEIDKPIILTANASFHGRTLATITATGQPKYQKYFDPLVPGFHYVPYNDITAVETAISELDEGDYQVAAILIEPLQGEGGVRPGDVAYFQKLRRICDETGILLIFDEVQVGMGRSGHLWGYEHLGVEPDIFTSAKGLGGGIPIGAMMSKKFCAVFQPGEHASTFGGNPFVCGVALSVCQTLEKENILQNVQERGEQLRAGLRAIATKYPHYISEVRGWGLINGMELTDDIALTAGEVVNAAIAEGLLLVPAGPKVVRFVPPLIVTNTEIDQALQALDKALAKITG
>NC_019676.1|WP_015115641.1|5772796_5773354_-|glutathione-S-transferase-family-protein
MLKLYGGAFSRAAIAKWYLEELQVPYEFVQLDMQAGAHRQPEYLQINPMGKVPAIVDGDFQLWESGAILLYLHEKYGKSPTSLEERAEIYQWVLFANSTLASGIFTESTREREVPLLLTPLNEIFQQQHFVLGDEFSVADVAVGSVLAYIPMMLKLDLSAYPAVLEYINRISERPAFKKGIGGKP
>NC_019676.1|WP_015115642.1|5773366_5773831_-|hypothetical-protein
MTTAISDQNTADLAADDYVVIGLATCFIKEDGEVYQVEVIEPIPSASLEALMKDIPTSYKLAYATTLGAVLDGDTPLLPAGFPTSAQFGEEFAQRVFAAARTYKRSENSKNLIPLGTTYSDFKYSIERKRVLNAARVVNKEDNVKQHSHTHKVL
>NC_019676.1|WP_044500313.1|5774142_5775258_-|YjgP/YjgQ-family-permease
MDRYLLSELLPPFLFGVGAFSSIGVTIDAVFDLIRKIVESGLPVGIAIQVFLLKMPYFIVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLPAVMLSLVVTGMTFVFNEQVTPTANYQANRILDSALKSDKPILKQQNIFYPEYRDFQEKDGTKSKILARLFYADQFDGKRMKGLTIIDRSTEGLNQVVVAESAQWNGSQSVWDFYNGTIYLVAPNGSYRNILRFEQQQLKLPRTPLSLVEKSRDYGEMNISESLEQLTVEKLGGDRQKIRKLQVRIQQKIALPFVCLVFGLVGAAMGTVPQRTGRGTSFGVCVIVIFTYYLMFFISGAIGQAGIISPFLGAWLPNFIFLVIGLFLLMRVARR
>NC_019676.1|WP_015115644.1|5775376_5776105_-|LPS-export-ABC-transporter-ATP-binding-protein
MKIVLENIHKSYGKRAIVNRVNLSVIQGEVVGLLGPNGAGKTTTFYIATGLERPNQGRVWLDTQDITGVAMHKRARLGIGYLAQEASIFRQLSVQDNILLVLEQTNVPKREWSKRLHTLLREFRLEKVAHSKGIQLSGGERRRTELARALAAGQEGPKFLLLDEPFAGVDPIAVAEIQEIVAKLRDRGMGILITDHNVRETLAITDRAYIMREGQILAAGTSDELYSNPLVRQYYLGDNFHI
>NC_019676.1|WP_015115645.1|5776198_5776696_-|OstA-family-protein
MKPCNQLLTSQIRRFGLALVLPTALLGALTFPSQTQTATAQSAAGNRPLTIRSDIQEYDAKSQIITARGNVQMLYPARQIQATSAQAQYFSKERRIDFSGNVYILQQGGNSIRAEKVTYLIDEGRFVALPQGNRQVESIYMVEDSEIGGQNTTPAPKTPNFKPAN
>NC_019676.1|WP_015115646.1|5777087_5778269_+|tyrosine-type-recombinase/integrase
MLLRAKKGSVTINAKSGKLRIVLPRNIGDGKQHYIYTGFDDTVKNRKKVQMVALQIETDIEDNCLDCTLDKYRTMLGVFRGQQRLQIIPKAPNLKQLWAKYCEFKQPQVSASTFNQDFLGSYAKAINNLPTNEIKDAIAIRDHLIQTYPPYTAKRYLTQFNACCKWAVKSKLTASNPFDGLTVDIKVKRWDTSKIDPFTLAERDAIIQAFEQHPLYIGYTNFVRFLFFTGCRIGEAIALQWKHINIDCTEIYFCESYSFHGRKETKTGVNRKFPCNEQLRAFLLSAREHSPTPEKLVFPALGGGEIKANSFTGVVWRGGVSHGVKTPGIVTQLVTEGKVSRYRPVYNTRHTFISLCLERGVSVQRIARWVGNSPEVIYKHYAGVLGDATVPEL
>NC_019676.1|WP_015115647.1|5778556_5778712_+|hypothetical-protein
MDNKRDTVIRLRVNPNERQIVQQAAQAKGITISDLVRQNVGLPMLGKINAS

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Crispr_ID: NC_019676_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019676_27

5817107-5818597

Orphan

A:N

Consensus_repeat	Method
GTTGCAATTTCTATTAATCCCTATCAGGGA----------TTGAAAC	PILER-CR
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CRT

20 spacers

The CRISPR arrays of NC_019676_27

>merge|NC_019676|27|5817107-5818597|PILER-CR,CRISPRCasFinder,CRT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACACATGAACCAAGCGGACTACCACAGGGGGCAACAAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCTGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAGGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACAAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCCGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAGGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACCATGTGTATGTCCGTGCAGGTGAATGCTCTTGCGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACATCAGTTAACAACTGTTCACTGTTTTAGTCGGTAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACACAAATTCTTAAACGGTCGACAGACGCGATCGCCCGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACCAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTTCCGCTAATGAGTTGAGGCGATCGCCTGAGATAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACCTTTGGAGCAATGGATTTGGCATAAAGCCGATCATAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACGAGCGTTCAGGTAATAAATATTGGTATTACCGCTGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACGAGTGGATAGCGTGGTGTATGAAAACATACAACTGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTTTATTAGTATCTATATGAGTGTAGATATCAGCTTGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACATTCTGATCCTGGGTAAATATACGATTTAACGCAAAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTATGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACGAGAAAAGTTGGACTAATTCACCTACATCAACAGCCGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACTGAGTATTTTGCTAACGATACTGCCAAAAATCAGTGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACCAATTAACCGCTTGAACTGTTTTTTGAAGGTTTCGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAACACACAGCAGAAGTCAATAGAAAAAACATCTGAAAGTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC

>NC_019676|27|17|5817107-5818597|PILER-CR
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACATGAACCAAGCGGACTACCACAGGGGGCAACAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	AAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CATGTGTATGTCCGTGCAGGTGAATGCTCTTGC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATCAGTTAACAACTGTTCACTGTTTTAGTCGGTA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACAAATTCTTAAACGGTCGACAGACGCGATCGCCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTCCGCTAATGAGTTGAGGCGATCGCCTGAGATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CTTTGGAGCAATGGATTTGGCATAAAGCCGATCATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGCGTTCAGGTAATAAATATTGGTATTACCGCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGTGGATAGCGTGGTGTATGAAAACATACAACT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTAGTATCTATATGAGTGTAGATATCAGCTT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATTCTGATCCTGGGTAAATATACGATTTAACGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTAT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGAAAAGTTGGACTAATTCACCTACATCAACAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TGAGTATTTTGCTAACGATACTGCCAAAAATCAGT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAATTAACCGCTTGAACTGTTTTTTGAAGGTTTC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACACAGCAGAAGTCAATAGAAAAAACATCTGAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC

>NC_019676|27|26|5817107-5818597|CRISPRCasFinder
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACATGAACCAAGCGGACTACCACAGGGGGCAACAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	AAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CATGTGTATGTCCGTGCAGGTGAATGCTCTTGC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATCAGTTAACAACTGTTCACTGTTTTAGTCGGTA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACAAATTCTTAAACGGTCGACAGACGCGATCGCCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTCCGCTAATGAGTTGAGGCGATCGCCTGAGATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CTTTGGAGCAATGGATTTGGCATAAAGCCGATCATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGCGTTCAGGTAATAAATATTGGTATTACCGCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGTGGATAGCGTGGTGTATGAAAACATACAACT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTAGTATCTATATGAGTGTAGATATCAGCTT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATTCTGATCCTGGGTAAATATACGATTTAACGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTAT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGAAAAGTTGGACTAATTCACCTACATCAACAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TGAGTATTTTGCTAACGATACTGCCAAAAATCAGT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAATTAACCGCTTGAACTGTTTTTTGAAGGTTTC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACACAGCAGAAGTCAATAGAAAAAACATCTGAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC

>NC_019676|27|15|5817107-5818597|CRT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACATGAACCAAGCGGACTACCACAGGGGGCAACAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	AAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAG
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CATGTGTATGTCCGTGCAGGTGAATGCTCTTGC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATCAGTTAACAACTGTTCACTGTTTTAGTCGGTA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACAAATTCTTAAACGGTCGACAGACGCGATCGCCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTCCGCTAATGAGTTGAGGCGATCGCCTGAGATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CTTTGGAGCAATGGATTTGGCATAAAGCCGATCATA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGCGTTCAGGTAATAAATATTGGTATTACCGCT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGTGGATAGCGTGGTGTATGAAAACATACAACT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TTTATTAGTATCTATATGAGTGTAGATATCAGCTT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ATTCTGATCCTGGGTAAATATACGATTTAACGCAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTAT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	GAGAAAAGTTGGACTAATTCACCTACATCAACAGCC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	TGAGTATTTTGCTAACGATACTGCCAAAAATCAGT
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	CAATTAACCGCTTGAACTGTTTTTTGAAGGTTTC
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC	ACACAGCAGAAGTCAATAGAAAAAACATCTGAAA
GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019676.1\|WP_015115673.1\|5803739_5805506_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215160
NC_019676.1\|WP_015115680.1\|5810834_5813909_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|368641
NC_019676.1\|WP_015115682.1\|5815733_5816816_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115692.1\|5829270_5830869_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_019676.1\|WP_015115675.1\|5806214_5806868_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
NC_019676.1\|WP_015115685.1\|5821206_5821758_+\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NC_019676.1\|WP_015115686.1\|5821799_5822072_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284377
NC_019676.1\|WP_015115684.1\|5819817_5820585_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239590
NC_019676.1\|WP_015115687.1\|5822163_5823360_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100085
NC_019676.1\|WP_015115688.1\|5825044_5825995_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115681.1\|5813944_5815669_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019676.1\|WP_015115674.1\|5805647_5805854_-\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115678.1\|5809139_5809691_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_019676.1\|WP_048819362.1\|5809927_5810683_+\|hypothetical-protein	unknown	unknown	unknown
NC_019676.1\|WP_015115676.1\|5806919_5808299_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_019676.1\|WP_015115689.1\|5826338_5827469_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|224370
NC_019676.1\|WP_015115677.1\|5808507_5809140_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_019676.1\|WP_015115691.1\|5828528_5829209_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NC_019676.1\|WP_015115683.1\|5818665_5819052_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
NC_019676.1\|WP_015115690.1\|5827693_5828191_-\|bifunctional-nuclease-family-protein	unknown	unknown	gnl\|CDD\|224179

Protein	Function_ID	Function_description	E-value
NC_019676.1\|WP_015115673.1\|5803739_5805506_-\|arginine--tRNA-ligase	gnl\|CDD\|215160	PLN02286, PLN02286, arginine-tRNA ligase.	0
NC_019676.1\|WP_015115680.1\|5810834_5813909_+\|S-layer-family-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	7.56931e-23
NC_019676.1\|WP_015115684.1\|5819817_5820585_+\|fatty-acid-desaturase	gnl\|CDD\|239590	cd03513, CrtW_beta-carotene-ketolase, Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that are capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	6.62754e-103
NC_019676.1\|WP_015115692.1\|5829270_5830869_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.43674e-40
NC_019676.1\|WP_015115675.1\|5806214_5806868_+\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.09145e-75
NC_019676.1\|WP_015115685.1\|5821206_5821758_+\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	0.00228848
NC_019676.1\|WP_015115687.1\|5822163_5823360_-\|site-2-protease-family-protein	gnl\|CDD\|100085	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.	3.23297e-83
NC_019676.1\|WP_015115690.1\|5827693_5828191_-\|bifunctional-nuclease-family-protein	gnl\|CDD\|224179	COG1259, COG1259, Uncharacterized conserved protein [Function unknown].	1.94725e-62
NC_019676.1\|WP_015115681.1\|5813944_5815669_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.42796e-11
NC_019676.1\|WP_015115678.1\|5809139_5809691_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000748045
NC_019676.1\|WP_015115686.1\|5821799_5822072_+\|hypothetical-protein	gnl\|CDD\|284377	pfam06937, EURL, EURL protein. This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation.	0.00842242
NC_019676.1\|WP_015115676.1\|5806919_5808299_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.71311e-108
NC_019676.1\|WP_015115689.1\|5826338_5827469_-\|aldo/keto-reductase	gnl\|CDD\|224370	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only].	1.98209e-163
NC_019676.1\|WP_015115677.1\|5808507_5809140_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.63252e-38
NC_019676.1\|WP_015115691.1\|5828528_5829209_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.45132e-90
NC_019676.1\|WP_015115683.1\|5818665_5819052_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.77466e-74

>NC_019676.1|WP_015115682.1|5815733_5816816_+|hypothetical-protein
MLKNMKFSGSMIAGAMVTSLLGAIASGCTSFANSSVQQSDSVNINAPGQTVADKGDKNSSTAANPNQPKNSDNPVKKPALKEGMPYQQARELVIQQGWRPNLQGDAPNLRDNSVKELFDFGYKEVKDCSGTGVGACLFEFSNQAGELLSISATIADRSNTERVVWRWSIEKQTNISQQTLPSADSEKPPFIGTRLFNFLGGSGTGQSIAIAPDETTIVKLNGTFESSIQYNGKFSNPIMLQDGSGLGLLFKDGKIYSLLSNGQIAKGCKGEGTVCESSLLELSSTPIKDGFYILGGTDQGLEVRGKQYRYYDEEGNKEWNPISELNSIKEGLVFDGQNYWCIPPRREIGVCSENGWIPSR
>NC_019676.1|WP_015115681.1|5813944_5815669_+|calcium-binding-protein
MLKGNFEQFLEALGVLESGRPSGDPLQYSAQNLNTNAVGKYQFSEVLFIDLDYYNSDGNDYDGIFNGTWTRKNGVTSFESWKTNPYAQETAIREAFFVNYGYINSGLSARGISNIETYLSNSANQGVKTVRYYRLNAARTNFERDVNGNRIIYTEQTTISLSGILAGAHLRGGIAAAEILAQLNQKSLIDFTTTQFDLSYYTTYLFDEINTSIFRYFNDFGNYAANTTDFILSSYGNATNYVLYGTLNNNIINGGTGNDRLNGGSGIDTLSGGLGDDIYIVDTRTDNIIENAGAGVDTVSSSVTFSLAALANIENLTLTGTAAINGTGNAANNIITGNSGNNILSAGAGNDRLNGGSGIDTLSGGLGNDTYIVDTRTDTIIENAGAGVDTVSSSVTFSLAALANIENLTLTGTAAINGTGNAANNIITGNSGNNILSAGAGNDRLVGGAGIDTLSGGLGVDRFDYRQLTDSLLNKFDRITDFNANPGNDLFLVSSTRAGFLNAGSVTSLDASGIQARLTISNFGANFAAQFTFGSRTFIAINNNMAGFNASTDTLIEVTGLTGTLGITQFTTVV
>NC_019676.1|WP_015115680.1|5810834_5813909_+|S-layer-family-protein
MWLKLTINLSLFAAIAYTRIPYTLAQQIKADVYLPLNQRTQVTNNSPNFQIDGGATQSTNLFHSFSEFSVPVGGEAFFNNATTVQNIISRVTGSIPSNIQGTIRANGTANLFLINPQGIIFGPNARLNIGGSFIASTASSVTFADGIEFSATNPDATPLLTINQPIGLQFGTNPGRIENQSRTTDSLNQLIGLQVQTNTTLALVGGDLTLTGGVLTAPNGRIELGSVGSNSVVNLTSTSIGYTLNYEGVNDFQNINLRQRATATTIGSLGGSIHLQGANISLTDGSLVQVGIFGNGIGEGLTVNASESVQLIGSNNRLFTLNEGTAISGDLTITSPRLLLQDGAEVVSSTTGVRKSGNLNIHTSELLQVTGSGSRLFTQTESTAANAGNSGNLTIHTGNLLIQNRGQITVNTLGAGDGGNLTVNATKSVELVGRDSRLLTQAQGLGNTGNLTITTPILRISDGAQVSVSTLGAGNGGNLSVNTSESTQLIGRSQDGQFASGLFNQAESQATGNAGNIIITSPVLRILDGAQVSLSTLGVGNGGNLTVNTSESTQLIGRSQDGQFASGLFNQTQGSGNAGNIIITSPVLRILDGAQVSLGTLGTGNGGNLTVNTSESTQLIGRSQDGQFASGLFNQTESQATGNSGDLTINTPILQVFDGAQVSAGTLGAGNGGNLTVNTTETVELIGRSSDQTFPSGLFSQTQGTGDAGAIRITTPELRILDGAEISAATLATGKGGNVIIKASDNLRVQNGSQISVSSTENVAEAGNIDVTAGLVQLDGGKITAQTLSGNGGDIRLSIANLLFLRRGSTISTTAGTNASGGDGGNIKIKIPNGFVVAIPSENTDITANAFTGSGGRIDITAQNLFGIQSRPFNTPTSDITASSEFGINGVVNINTPDVDPARGVLVLSTNIIDSSQLIEQSCAAVNSSQGSQLTVAGRGGLPVDPNEPLSSEVVWSDTRLRNRTAQIYPHRATHTQLPKVVDIPNLIPATGWIFNNQGQVKLVAHTSTATSNTSLSIPTCHNR
>NC_019676.1|WP_048819362.1|5809927_5810683_+|hypothetical-protein
MRFILCSATVSLALSTGGAAQACSDLPNICEQQRLHWEQMNDIGAAREAINREEMERNFTPPPLQHSAPPYDPMQERLNQAVGILQLVALSAEKVDHLTKDPRFQRYHNGGWDFFQDKNNAAPGEYCAAFFWKKDGFVRVSGPGGNYQGALLTFWGKDIPRPKKVQKIKATLSQSSGPPQTVQVFNYTQPGEPYGAISFSVPTIEMALDEMKDIESFDVSIEGKSVAKVEWHSGLAARDQLRYCVNTRTKK
>NC_019676.1|WP_015115678.1|5809139_5809691_+|hypothetical-protein
MARKQNLSDLIQAEAQKLTPNSAVDEAAIEVQAVQVTDEKTDDADEEIAESTTTKRNASTKADLEATIRELQTTVEKNQAAEKALQKQIKQLQLALSEQQSSVEHLTQELEETKKTALQLAEANSQLIEENKALQQPKASIVPQKKEHYNPMDYRKSHRSPDILPDMPAETKDDFAANTWLYD
>NC_019676.1|WP_015115677.1|5808507_5809140_+|ParA-family-protein
MPKIVAILNGKGGVGKTTTSINLAAQFAKQRKVLVVDADIQGSASWWFGRNEQGMGFDLSQETDPQLLGNLRKIKGYDLVVVDTPPALHSEALATVVAIADYIVLPTPPAAMDLAVLIETVKTAVVPTGVPHRVLLTKVDARSIGEATEAQNTLVKLGIPVCKGFIRTYKAHERAALEGVAINQWRGKNAWEAESDYRRVADELQRDWRK
>NC_019676.1|WP_015115676.1|5806919_5808299_-|cytochrome-P450
MTVTNSLPDGPRVPYWLRIIKFIFRPIEYVEDFAKVYGDNFTVWRKGDNHLVYFSHPQALEQIFTADASHFATGGGGGILKYLLGDNSLILLDGDRHQRQRQLLTPPFHGERMRAYGQAIQEITQQVSNEWVIGKPFNIRASMQEITMRVILRVVFGVDEGSKYQQLRQLLSSVLDLISSSRMSAALFFQFMQRDWGTWSPWGKFLSQLQQIDQLIYSLIQERRAESGQNRQDILSLLISAHYDDGKPMSDAELRDELMTMLVAGHETTASALTWALYWIDCLPEVREKLLQELHTLGVHSEPSNIAKLPYLTAVCQETLRIYPIVMNGFVRVVKSPIEIMGYKLPKGTLIIPTIYLAHHREAVYPQPNLFKPERFLERQFSQYEYLPFGGGNRRCIGLAFAQYEMKIALATILSQFQVSLINKRPVRPVRRGLTLAAPAGLQMVATPQVKQANTPVEV
>NC_019676.1|WP_015115675.1|5806214_5806868_+|hypothetical-protein
MGNKKTDILFNHWQHTLQFFGVDQCKITATFTQLVAAYCTVGRYYHTLQHIHHVLNNIQTLQVYTQNLPTVQLAAWFHDVVYDTHANDNEARSAEYACQLLTNLAIPISQITIIQRLILNTKHHQAAIDDIDSHILLDADLAILAANPVDYQKYAHAIRQEYAWVTEAEYTKGRKQVLEKFLQRQHIYFTPLMFEMAEQSARANLQAEIQQLACKKN
>NC_019676.1|WP_015115674.1|5805647_5805854_-|hypothetical-protein
MTIWVNEQIDPSGMIYACIACCNESQAKDCHESFANNLTEKQKAAGWTAILRIVDSWDEVPVNALKLD
>NC_019676.1|WP_015115673.1|5803739_5805506_-|arginine--tRNA-ligase
MNATQEQLKIKFEQAMMAAFGDEYATVDPILVPAGNPKFGDYQANVALSLSKKLGQQPRAIASAIVEKLDVSQICEPPEIAGPGFINLRLKTAYLQAQLQAIYPDSRLGVPQAKTPQQEIVDFSSPNIAKEMHVGHLRSTIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVYPQALTTANALDIGDLVSFYRQAKQRFDADETFQETARQEVVKLQAGAADTLHAWKLLCEQSRKEFQVIYDLLDIHLNERGESFYNPLLPAIVEDLAKSGLLVENQGAKVVFLEGYTNREGEPLPLIVKKSDGGYNYATTDLAALRYRIQKDAAKRIIYVTDAGQSNHFAQFFQVARKAGWIPDDVELVHVPFGLVLGEDGKRIKTRAGESVRLRDLLDEAIIRARTDLEQRLQEDNRTETADFIANVAQVIGISAVKYADLSQNRTSNYIFSYNKMLDLKGNTAPYMLYAYARIQGISRKGGINFEQLGDNAQVILEHETEFALAKYLLQLGEVVSTVEQDLLPNRLCEYLYELSKKFNVFYDRNHGVRVLDAEEPQRTSRLVLCDLTARTLKLGLSLLGIQVLERM
>NC_019676.1|WP_015115683.1|5818665_5819052_+|VOC-family-protein
MKTIGIHHIAIICSDYEKSKMFYVNILGFAIIKETFRAERNSYKLDLRINNYTQIELFSFPNPPKRLSNPEACGLRHLAFCIENIEETVAYLKLHNIETENIRIDEVTGRKFTFFQDPDNLPLEIYEV
>NC_019676.1|WP_015115684.1|5819817_5820585_+|fatty-acid-desaturase
MIQINLVSSQSKKADFAINTEKTTNKGIFIACIILGLWTISITLFLSLDISEISILLIALAMLWQTFLYTGLFITAHDAMHGIVCPGNPKMNNWIGKIFVLLYGLFSYQELLKKHCLHHRYPSTQDDPDFYENQYQNFFAWYFNFIKSYWSWTQHLGFIVVFIILRYVLNIFQNNLIIFWVIPSICSSIQLFYFGTFLPHRRLESGYTSVHQTRSIALPIFWSFISCYHFGYHKEHHEYPNVPWWRLPEVYKGLE
>NC_019676.1|WP_015115685.1|5821206_5821758_+|DUF4870-domain-containing-protein
MSHLPLTVRIWAAICHLNAFIWIPFLFLQFTLHTTLLQLAQLPAGVSICLVRPHAICNAEVRSMLFMVMLIQLTCICCFPFISVVVTLFLWRIKKYANSFIYQHGKEALYFQLELAYITFFLHIMGLLILMMLNSLTPGGLLVIMIFDIYIFPLLVILQLLKAFFCSFKALKGGFIRYNDIVK
>NC_019676.1|WP_015115686.1|5821799_5822072_+|hypothetical-protein
MNGIDWLRTLHTKQLLGIKNDCYEGFFHRGGGYVIYNNGDFPQGSGIKITYEELKQVLSERPHIPNGAETKRIRQKAAKQKVRLYQSSKF
>NC_019676.1|WP_015115687.1|5822163_5823360_-|site-2-protease-family-protein
MQTNWKIGTLFGIPLFLDPLWFVILGLATLNFGVAYQEWGSTIAWSAGIVMALLLFGSVLLHELGHSLAARSQGIKVNSITLFLFGGIAAIEEESKTPGKAFQVAIAGPLVSIGLFFLLRVVAIFIPETNPLSVMVGDLARINLVVALFNLIPGLPLDGGQVLKAALWKVTGDRFQAVHWAAKSGQILGYAAIALGFAIDFFTRELALGLWIAMIGWFGIRNANTYDRVTTLQETLLKIVASEAMTRDFRVVDADQSLRAFADAYLLDNATPQVYFAASDGRYRGLVAIEDLRLIERSEWETHTLQSIAHPLTEIPTVTESTAIAEVINKLENEQLPRVTVLSPAGAVAGVIDRGDIVSAVAQKLNIPFTAVEIKRIKEEGSYPPGLQLEVIAKSTVN
>NC_019676.1|WP_015115688.1|5825044_5825995_+|hypothetical-protein
MNTPLIKLEELQQGKILVDELGLLTEMPNELIQLSHRVKQIMAGSNVVQGMCAGDYFSLVTYSAIYWGIVKTFPRTVIKNVKKFLNRFSDKNSSRNLLLVFNYTSKERETILASLQYGISGIAKDYGFEEGSHLDYWKKLMASVGIMADSHTGKLSPEGAKLMEQLEQAEPIIAMDTLINKETDMRNALIAMLAIEFIAVGISECVIDSPDSQILFSPSGRGIPRDWFDVHYHAGDHHILQDGEYDLTPDLAQLKLPHDTINYNMLKMAHIADYEGEELQDILQEKVLHIAKAFATAGNYTCKVEESMNLSLSVKS
>NC_019676.1|WP_015115689.1|5826338_5827469_-|aldo/keto-reductase
MQYRRFGKTNLHLSVFSLGTMRYLADAENAQDTIAQALALGINHIETARGYGKSEEFLGQALQSGLSVPRSQLHITTKVPPTADADSMRRYIDESLTRLHLDYLDCLGIHGLNTWEHLQWVQANGGCMQAVQEAVGDGRVRHVGFSTHGTLEVIKAAINTDLFEFVNLHYYYFFQRHAPAIQLAAEKDMGVFIISPADKGGKLYTPPQTLKNLCQPYSPLELNYRFLLNDNRITTLSVGAAKPEELIEPLQVADRDGELISAEIAVFQSLENYQKTVLDTDKCSQCYACLPCPENINIPEVLRLRNLAVAYNMTDYGQYRYEMFENAGHWFPGMKANRCTECGDCLPRCPEELDIPALLNDAHERLKGQTGRRLWG
>NC_019676.1|WP_015115690.1|5827693_5828191_-|bifunctional-nuclease-family-protein
MIEMKVAGIALDAITRSPIVLLKDASDRRALPIYIGQEQARAIMGALENQKPPRPLTHDLIVNILETWNMTLEKVIIHSLQKDTFYAALIVQQGEVKKEIDARPSDAIAVALRTNTPIWVMEEVVADASIPVDRDADEAEQEAFREFISNLRPEDLIKRFGNGDS
>NC_019676.1|WP_015115691.1|5828528_5829209_+|riboflavin-synthase
MFTGLVQTLGTIKPLAGDSWQITCVSQPSNVIMQDLAYGDSVAVDGICLTVEEILKDGFIATASPETLRRTTLGLEETQARYVNLEASLRVGGKVGGHFVMGHVDGVGRLLTAEQTATSWEMTFTAPEAIARYIVPKGSIAVNGISLTVAAYEPELSHFTVAVIPLTYADTNLRYLAPDSWVNLEGDILGKYVEKLLYPDKKQSTSPNDSGFNEITPTFLAEHGYL
>NC_019676.1|WP_015115692.1|5829270_5830869_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MTQRNTSAHNPSHGSNQQGMKKKRFVSTLPAQSICLLSSFSLLSSGFVFAQTETSIDNIVPVENSQSTGKTNFIKKDIVIPEAPKKQGEFSQRRANLSQRLRKPEVVQSKEPVRQSKPQTETAVEPVFTTRQRTPAVTPQLKPVNVRTAKPKPEVAQPSPSIREEVIKPVAPRTIPEKLPEVAQPVNNSNSTTEATTGKIKDSNNAYIDPNNYGSSATNTYQAPNSVIITERSSGCRTILPSGQAISLGFCNQAQPGGNQRVANSESKPAPTWLKKSQNAQLASVPPVRTGITAGNNGVAYSGEVKTAFRPNRFIPNPNDFGATRISSTPVAPSAGALPAPMIEGNLAPRVSTVTYDIPLASVLPQIPYTNTIAYRGGAGINYPLSVPATITSLFGWRIHPITGNRRFHAGTDLGAPMGTPILAAAKGQVDTAGWLGGYGLTVILTHSSAQQTLYGHMSEIFVQPGQVVEPGMVIGRVGSTGNSTGPHLHFEVRHLTQDGWVAVDPGGQLQAGLSQLIQTMRTAQVIGEPGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019676_5	5.3\|2168525\|41\|NC_019676\|CRT	2168525-2168565	41	NC_019676.1	2169125-2169165	0	1.0
NC_019676_5	5.4\|2168585\|41\|NC_019676\|CRT	2168585-2168625	41	NC_019676.1	2169185-2169225	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	33099-33131	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	246490-246522	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	660849-660881	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	795126-795158	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	2107914-2107946	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	2128576-2128608	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	2677445-2677477	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	3280511-3280543	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	4254863-4254895	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	4746181-4746213	0	1.0
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	1062204-1062236	1	0.97
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	5266687-5266719	1	0.97
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	5285901-5285933	1	0.97
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	997625-997657	2	0.939
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	2993478-2993510	2	0.939
NC_019676_11	11.1\|3371398\|33\|NC_019676\|CRISPRCasFinder	3371398-3371430	33	NC_019676.1	4920295-4920327	2	0.939

1. spacer 5.3|2168525|41|NC_019676|CRT matches to position: 2169125-2169165, mismatch: 0, identity: 1.0

taatggggaagatatattaaacgtcgatcagtccatcggca	CRISPR spacer
taatggggaagatatattaaacgtcgatcagtccatcggca	Protospacer
*****************************************

2. spacer 5.4|2168585|41|NC_019676|CRT matches to position: 2169185-2169225, mismatch: 0, identity: 1.0

tgcgaatgatgatgatctgtttgcggttgcgtctgagggcg	CRISPR spacer
tgcgaatgatgatgatctgtttgcggttgcgtctgagggcg	Protospacer
*****************************************

3. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 33099-33131, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

4. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 246490-246522, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

5. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 660849-660881, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

6. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 795126-795158, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

7. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 2107914-2107946, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

8. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 2128576-2128608, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

9. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 2677445-2677477, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

10. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 3280511-3280543, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

11. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 4254863-4254895, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

12. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 4746181-4746213, mismatch: 0, identity: 1.0

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttacagc	Protospacer
*********************************

13. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 1062204-1062236, mismatch: 1, identity: 0.97

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccacagggctttacagc	Protospacer
******************.**************

14. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 5266687-5266719, mismatch: 1, identity: 0.97

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggctttgcagc	Protospacer
****************************.****

15. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 5285901-5285933, mismatch: 1, identity: 0.97

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagccatgcccgcagggcttgacagc	Protospacer
*************************** *****

16. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 997625-997657, mismatch: 2, identity: 0.939

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcacagctatgcccgcagggctttacagc	Protospacer
******.****.*********************

17. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 2993478-2993510, mismatch: 2, identity: 0.939

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctaagcgcagctatgcccgtagggctttacagc	Protospacer
***********.*******.*************

18. spacer 11.1|3371398|33|NC_019676|CRISPRCasFinder matches to position: 4920295-4920327, mismatch: 2, identity: 0.939

ctaagcgcagccatgcccgcagggctttacagc	CRISPR spacer
ctacgcgcagcaatgcccgcagggctttacagc	Protospacer
*** ******* *********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019676_26	26.19\|5767667\|36\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5767667-5767702	36	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	192951-192986	0	1.0
NC_019676_12	12.19\|3448127\|33\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3448127-3448159	33	NZ_CP054196	Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence	1055-1087	6	0.818
NC_019676_12	12.19\|3448127\|33\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3448127-3448159	33	NC_006829	Haemophilus parasuis plasmid pHS-Rec, complete sequence	8260-8292	6	0.818
NC_019676_12	12.19\|3448127\|33\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3448127-3448159	33	NC_007800	Bibersteinia trehalosi plasmid pCCK13698, complete sequence	1549-1581	6	0.818
NC_019676_12	12.19\|3448127\|33\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3448127-3448159	33	NZ_CP018033	Glaesserella parasuis D74 plasmid pD74, complete sequence	6674-6706	6	0.818
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP048110	Klebsiella michiganensis strain BD177 plasmid unnamed2	113052-113084	7	0.788
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP035181	Klebsiella pneumoniae strain BA33875 plasmid pBA33875_KPC2, complete sequence	33553-33585	7	0.788
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_AP017960	Synechococcus sp. NIES-970 plasmid plasmid1 DNA, complete sequence	119776-119808	7	0.788
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MK867354	Synechococcus phage S-SCSM1, complete genome	166589-166621	7	0.788
NC_019676_10	10.17\|3313322\|34\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3313322-3313355	34	NZ_CP015595	Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence	125446-125479	7	0.794
NC_019676_12	12.10\|3447472\|33\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3447472-3447504	33	MN585966	Gordonia phage Faith5x5, complete genome	35885-35917	7	0.788
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	NC_007581	Clostridium phage c-st, complete genome	165957-165990	8	0.765
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	AP008983	Clostridium phage c-st genomic DNA, complete genome	165957-165990	8	0.765
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	483417-483449	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN693025	Marine virus AFVG_117M63, complete genome	41709-41741	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN693886	Marine virus AFVG_250M878, complete genome	13049-13081	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN694385	Marine virus AFVG_250M877, complete genome	13369-13401	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN693172	Marine virus AFVG_25M378, complete genome	23896-23928	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN692993	Marine virus AFVG_117M87, complete genome	21046-21078	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN694197	Marine virus AFVG_250M303, complete genome	23957-23989	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_KY433363	Proteus mirabilis strain R997 plasmid pR997, complete sequence	36114-36146	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	507215-507247	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	MN175386	Klebsiella pneumoniae strain KP-13-14 plasmid pKP-13-14-NDM-9, complete sequence	286370-286402	8	0.758
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	19906-19938	8	0.758
NC_019676_20	20.3\|4564136\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564136-4564169	34	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	88212-88245	8	0.765
NC_019676_20	20.11\|4564725\|33\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564725-4564757	33	NZ_CP026016	Klebsiella variicola strain 13450 plasmid p13450-2, complete sequence	66347-66379	8	0.758
NC_019676_25	25.1\|5764839\|33\|NC_019676\|CRISPRCasFinder	5764839-5764871	33	NZ_CP007001	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence	2415-2447	8	0.758
NC_019676_25	25.1\|5764839\|33\|NC_019676\|CRISPRCasFinder	5764839-5764871	33	NZ_CP008811	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-1, complete sequence	33117-33149	8	0.758
NC_019676_26	26.21\|5767814\|35\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5767814-5767848	35	NZ_CP046715	Nostoc sp. ATCC 53789 plasmid pNsp_l, complete sequence	33762-33796	8	0.771
NC_019676_6	6.1\|2728795\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2728795-2728828	34	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	175649-175682	9	0.735
NC_019676_6	6.2\|2728866\|35\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2728866-2728900	35	MK380014	Klebsiella phage K1-ULIP33, complete genome	33039-33073	9	0.743
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	146087-146120	9	0.735
NC_019676_6	6.9\|2729374\|36\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729374-2729409	36	NC_017935	Mesotoga prima MesG1.Ag.4.2 plasmid pTHEBA.01, complete sequence	1140-1175	9	0.75
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_MF600313	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence	133604-133636	9	0.727
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	86142-86174	9	0.727
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	33534-33566	9	0.727
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NZ_CP053858	Rhizobium pusense strain 76 plasmid pR76, complete sequence	458368-458400	9	0.727
NC_019676_6	6.16\|2729885\|33\|NC_019676\|CRISPRCasFinder,CRT	2729885-2729917	33	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	16032-16064	9	0.727
NC_019676_10	10.17\|3313322\|34\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3313322-3313355	34	JN638751	Bacillus phage G, complete genome	480910-480943	9	0.735
NC_019676_20	20.11\|4564725\|33\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564725-4564757	33	NZ_CP029143	Klebsiella michiganensis strain AR375 plasmid unnamed3, complete sequence	40085-40117	9	0.727
NC_019676_20	20.21\|4565454\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565454-4565487	34	NZ_CP019924	Borreliella burgdorferi strain PAbe plasmid p_lp36, complete sequence	30693-30726	9	0.735
NC_019676_20	20.21\|4565454\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565454-4565487	34	NC_011778	Borreliella burgdorferi ZS7 plasmid ZS7_lp36, complete sequence	30718-30751	9	0.735
NC_019676_20	20.21\|4565454\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565454-4565487	34	NC_001855	Borreliella burgdorferi B31 plasmid lp36, complete sequence	30693-30726	9	0.735
NC_019676_20	20.21\|4565454\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565454-4565487	34	NZ_CP019852	Borreliella burgdorferi plasmid lp36, complete sequence	30561-30594	9	0.735
NC_019676_20	20.21\|4565454\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565454-4565487	34	NZ_CP019763	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp36, complete sequence	30627-30660	9	0.735
NC_019676_27	27.7\|5817590\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5817590-5817623	34	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	43887-43920	9	0.735
NC_019676_27	27.20\|5818527\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5818527-5818560	34	MN693555	Marine virus AFVG_25M96, complete genome	29788-29821	9	0.735
NC_019676_27	27.20\|5818527\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5818527-5818560	34	MN694459	Marine virus AFVG_250M532, complete genome	17217-17250	9	0.735
NC_019676_6	6.4\|2729009\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729009-2729042	34	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	154315-154348	10	0.706
NC_019676_6	6.4\|2729009\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729009-2729042	34	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	153927-153960	10	0.706
NC_019676_6	6.4\|2729009\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729009-2729042	34	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	153927-153960	10	0.706
NC_019676_6	6.4\|2729009\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729009-2729042	34	LR135896	uncultured phage genomic DNA containing rbcL region region	63060-63093	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MN850587	Escherichia phage mistaenkt, complete genome	1033-1066	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MK562502	Shigella phage KPS64, complete genome	77576-77609	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	NC_028247	Citrobacter phage Michonne, complete genome	76751-76784	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MF158040	Shigella phage Sf13, complete genome	28799-28832	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MF158041	Shigella phage Sf15, complete genome	85012-85045	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MH920362	Citrobacter phage Maleficent, complete genome	76787-76820	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MN342151	Escherichia phage vB_EcoM_3HA14, complete genome	76081-76114	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	NC_041977	Citrobacter phage Mordin, complete genome	15230-15263	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MF158044	Shigella phage Sf18, complete genome	53376-53409	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	MF327003	Shigella phage Sf14, complete genome	976-1009	10	0.706
NC_019676_6	6.7\|2729232\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2729232-2729265	34	NC_028808	Escherichia phage SUSP1, complete genome	35286-35319	10	0.706
NC_019676_10	10.19\|3313462\|37\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3313462-3313498	37	MN096356	Mycobacterium phage Bunnies, complete genome	14181-14217	10	0.73
NC_019676_10	10.19\|3313462\|37\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3313462-3313498	37	MF281061	Mycobacterium phage Ksquared, complete genome	14181-14217	10	0.73
NC_019676_12	12.12\|3447613\|34\|NC_019676\|CRISPRCasFinder,CRT,PILER-CR	3447613-3447646	34	MN062189	Serratia phage MyoSmar, complete genome	19798-19831	10	0.706
NC_019676_20	20.3\|4564136\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564136-4564169	34	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	307851-307884	10	0.706
NC_019676_20	20.3\|4564136\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564136-4564169	34	NZ_CP009717	Bacillus thuringiensis strain HD682 plasmid pBGN_3, complete sequence	511-544	10	0.706
NC_019676_20	20.3\|4564136\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564136-4564169	34	NZ_CP053935	Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed3, complete sequence	3019-3052	10	0.706
NC_019676_20	20.3\|4564136\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4564136-4564169	34	NZ_CP023183	Bacillus cereus strain CC-1 plasmid p4, complete sequence	7029-7062	10	0.706
NC_019676_20	20.19\|4565310\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565310-4565343	34	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	573366-573399	10	0.706
NC_019676_20	20.19\|4565310\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565310-4565343	34	MN695335	Synechococcus phage B23, complete genome	128778-128811	10	0.706
NC_019676_20	20.19\|4565310\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565310-4565343	34	MN695334	Synechococcus phage B3, complete genome	130267-130300	10	0.706
NC_019676_20	20.20\|4565381\|36\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565381-4565416	36	NZ_CP021367	Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence	145747-145782	10	0.722
NC_019676_20	20.20\|4565381\|36\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	4565381-4565416	36	NZ_CP021363	Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence	130639-130674	10	0.722
NC_019676_27	27.12\|5817948\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5817948-5817981	34	NZ_CP022518	Pantoea vagans strain FBS135 plasmid pPant2, complete sequence	43130-43163	10	0.706
NC_019676_24	24.3\|5566503\|37\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5566503-5566539	37	NZ_CP014570	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence	7925-7961	11	0.703
NC_019676_26	26.3\|5766489\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	5766489-5766522	34	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	435861-435894	11	0.676
NC_019676_6	6.3\|2728938\|34\|NC_019676\|PILER-CR,CRISPRCasFinder,CRT	2728938-2728971	34	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	358900-358933	12	0.647

1. spacer 26.19|5767667|36|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 0, identity: 1.0

cacatcagatattgatttcgccaatttgtgattacg	CRISPR spacer
cacatcagatattgatttcgccaatttgtgattacg	Protospacer
************************************

2. spacer 12.19|3448127|33|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054196 (Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

agcttctggcatcacagctttaaatgctcagat	CRISPR spacer
agcaccgagcatcacacctttaaatgctcacat	Protospacer
*** .* .******** ************* **

3. spacer 12.19|3448127|33|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to NC_006829 (Haemophilus parasuis plasmid pHS-Rec, complete sequence) position: , mismatch: 6, identity: 0.818

agcttctggcatcacagctttaaatgctcagat	CRISPR spacer
agcaccgagcatcacacctttaaatgctcacat	Protospacer
*** .* .******** ************* **

4. spacer 12.19|3448127|33|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to NC_007800 (Bibersteinia trehalosi plasmid pCCK13698, complete sequence) position: , mismatch: 6, identity: 0.818

agcttctggcatcacagctttaaatgctcagat	CRISPR spacer
agcaccgagcatcacacctttaaatgctcacat	Protospacer
*** .* .******** ************* **

5. spacer 12.19|3448127|33|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018033 (Glaesserella parasuis D74 plasmid pD74, complete sequence) position: , mismatch: 6, identity: 0.818

agcttctggcatcacagctttaaatgctcagat	CRISPR spacer
agcaccgagcatcacacctttaaatgctcacat	Protospacer
*** .* .******** ************* **

6. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP048110 (Klebsiella michiganensis strain BD177 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgctgatgctgatagtgatgtgtttctt	Protospacer
 ***** ***********.******   ***.*

7. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP035181 (Klebsiella pneumoniae strain BA33875 plasmid pBA33875_KPC2, complete sequence) position: , mismatch: 7, identity: 0.788

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgctgatgctgatgctgatgagattctt	Protospacer
 ***** ************ *****. .***.*

8. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_AP017960 (Synechococcus sp. NIES-970 plasmid plasmid1 DNA, complete sequence) position: , mismatch: 7, identity: 0.788

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
acttacattgataccgatggtgatggtgttcct	Protospacer
 ** *. .****.*.******************

9. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 7, identity: 0.788

cctgattct---gatgctgatggtgatggtgttcct	CRISPR spacer
---tattttgaagatgctgatggtgatggtgaacct	Protospacer
    ***.*   *******************  ***

10. spacer 10.17|3313322|34|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015595 (Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cttaaaaatttgcaattctttacactgattaatt	CRISPR spacer
ttttaagccttgcaattctttacgctgataaatt	Protospacer
.** **. .**************.***** ****

11. spacer 12.10|3447472|33|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to MN585966 (Gordonia phage Faith5x5, complete genome) position: , mismatch: 7, identity: 0.788

aagaagcgctcgacgtgatgaggtagtagacaa	CRISPR spacer
agggtccactcgacgtgatgaggttgtagtcaa	Protospacer
*.*.  *.**************** **** ***

12. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 8, identity: 0.765

cattttcttgattattcattatctaatccttaag-----	CRISPR spacer
cattttcttgttaattcattatct-----ttaaacttaa	Protospacer
********** * ***********     ****.

13. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 8, identity: 0.765

cattttcttgattattcattatctaatccttaag-----	CRISPR spacer
cattttcttgttaattcattatct-----ttaaacttaa	Protospacer
********** * ***********     ****.

14. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgccgatgctgatggtgatggtcagaat	Protospacer
 ***** *.******************     *

15. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN693025 (Marine virus AFVG_117M63, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
ggtgattctgatgctgatggtgttggaagcgct	Protospacer
  ******************** *** . . **

16. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN693886 (Marine virus AFVG_250M878, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
agtgattctaatgctgatggtggtggtctaaca	Protospacer
  *******.************.**** *  *

17. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN694385 (Marine virus AFVG_250M877, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
agtgattctaatgctgatggtggtggtctaacg	Protospacer
  *******.************.**** *  *

18. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN693172 (Marine virus AFVG_25M378, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
agtgattctaatgctgatggtggtggtctaacg	Protospacer
  *******.************.**** *  *

19. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN692993 (Marine virus AFVG_117M87, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gtagttaatgatactgatgctgatggtgttcct	Protospacer
 . * *  ****.****** *************

20. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN694197 (Marine virus AFVG_250M303, complete genome) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
agtgattctaatgctgatggtggtggtctaacg	Protospacer
  *******.************.**** *  *

21. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_KY433363 (Proteus mirabilis strain R997 plasmid pR997, complete sequence) position: , mismatch: 8, identity: 0.758

cctgat--tctgatgctgatggtgatggtgttcct	CRISPR spacer
--tggtggtctgatccttatggtgatggtgttttc	Protospacer
  **.*  ****** ** **************...

22. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gattacgctgatgctgatggtcatggtggtcat	Protospacer
  * *. ************** ****** ** *

23. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to MN175386 (Klebsiella pneumoniae strain KP-13-14 plasmid pKP-13-14-NDM-9, complete sequence) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
cctgatgctgatgctgatgctgatactgatgag	Protospacer
****** ************ ****. ** *

24. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.758

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgctgatgctgatgctgatgccgatgcc	Protospacer
 ***** ************ ***** .* * *.

25. spacer 20.3|4564136|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 8, identity: 0.765

tattaacagtaataatattaaaactagttttagc	CRISPR spacer
cattcttagtaataatattaaatctagcttttgg	Protospacer
.***  .*************** ****.*** *

26. spacer 20.11|4564725|33|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026016 (Klebsiella variicola strain 13450 plasmid p13450-2, complete sequence) position: , mismatch: 8, identity: 0.758

tgttgcagagatgaataacaaattctctgccag	CRISPR spacer
tgttgcacagatgaatcacaaattccgttattg	Protospacer
******* ******** ********. *  . *

27. spacer 25.1|5764839|33|NC_019676|CRISPRCasFinder matches to NZ_CP007001 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence) position: , mismatch: 8, identity: 0.758

tcccttttttaataggagaagtaaattcataat	CRISPR spacer
ttcctttcttaataggataagtaaattatctac	Protospacer
*.*****.********* *********  . *.

28. spacer 25.1|5764839|33|NC_019676|CRISPRCasFinder matches to NZ_CP008811 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcccttttttaataggagaagtaaattcataat	CRISPR spacer
ttcctttcttaataggataagtaaattatctac	Protospacer
*.*****.********* *********  . *.

29. spacer 26.21|5767814|35|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046715 (Nostoc sp. ATCC 53789 plasmid pNsp_l, complete sequence) position: , mismatch: 8, identity: 0.771

tgatttgtgaagcggcagaaaaaat----gatgcgagaa	CRISPR spacer
tgatttgtgatgcgtcagaaaaaatcagcgattct----	Protospacer
********** *** **********    *** *

30. spacer 6.1|2728795|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ttcaaggtctggggtgtagggttagacccctcat	CRISPR spacer
gcggagcgccggggcgtagggttatacccctcat	Protospacer
 . .**  *.****.********* *********

31. spacer 6.2|2728866|35|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MK380014 (Klebsiella phage K1-ULIP33, complete genome) position: , mismatch: 9, identity: 0.743

cctctgtctgctctgtaatccttaactactccatc	CRISPR spacer
gctctgtctcctctgttatccttaactcgaagaac	Protospacer
 ******** ****** **********     * *

32. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 9, identity: 0.735

cattttcttgattattcattatctaatccttaag	CRISPR spacer
attttttttgataattcattatctaatggttctc	Protospacer
  ****.***** **************  **

33. spacer 6.9|2729374|36|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_017935 (Mesotoga prima MesG1.Ag.4.2 plasmid pTHEBA.01, complete sequence) position: , mismatch: 9, identity: 0.75

atttattgtaaatcctggaataaata----ggcgaagaaa	CRISPR spacer
atttatcgtaaatcctgcaataaatatcattgccac----	Protospacer
******.********** ********     ** *

34. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_MF600313 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence) position: , mismatch: 9, identity: 0.727

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgctgatgctgatgctgatgtcggtgtc	Protospacer
 ***** ************ ***** .* * ..

35. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gattacgctgatgctgatggtcatggtggtcac	Protospacer
  * *. ************** ****** ** .

36. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 9, identity: 0.727

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gattacgctgatgctgatggtcatggtggtcac	Protospacer
  * *. ************** ****** ** .

37. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 9, identity: 0.727

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gctgatgctgatgctgatgctgatgcggacgcc	Protospacer
 ***** ************ *****  * . *.

38. spacer 6.16|2729885|33|NC_019676|CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 9, identity: 0.727

cctgattctgatgctgatggtgatggtgttcct	CRISPR spacer
gattacgctgatgctgatggtcatggtggtcac	Protospacer
  * *. ************** ****** ** .

39. spacer 10.17|3313322|34|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 9, identity: 0.735

cttaaaaatttgcaattctttacactgattaatt	CRISPR spacer
accataattttgcaattctttaaactgatttaaa	Protospacer
 ..* ** ************** ******* *

40. spacer 20.11|4564725|33|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029143 (Klebsiella michiganensis strain AR375 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

tgttgcagagatgaataacaaattctctgccag	CRISPR spacer
tgttgcacagatgaatcacaaattccgttatta	Protospacer
******* ******** ********. *  . .

41. spacer 20.21|4565454|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019924 (Borreliella burgdorferi strain PAbe plasmid p_lp36, complete sequence) position: , mismatch: 9, identity: 0.735

gcttacctgtaaaagtaaaatatttaggacaagc	CRISPR spacer
ctagataagtaaaagtaaaatattaaagacaagc	Protospacer
 .  *.  **************** *.*******

42. spacer 20.21|4565454|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_011778 (Borreliella burgdorferi ZS7 plasmid ZS7_lp36, complete sequence) position: , mismatch: 9, identity: 0.735

gcttacctgtaaaagtaaaatatttaggacaagc	CRISPR spacer
ctagataagtaaaagtaaaatattaaagacaagc	Protospacer
 .  *.  **************** *.*******

43. spacer 20.21|4565454|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_001855 (Borreliella burgdorferi B31 plasmid lp36, complete sequence) position: , mismatch: 9, identity: 0.735

gcttacctgtaaaagtaaaatatttaggacaagc	CRISPR spacer
ctagataagtaaaagtaaaatattaaagacaagc	Protospacer
 .  *.  **************** *.*******

44. spacer 20.21|4565454|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019852 (Borreliella burgdorferi plasmid lp36, complete sequence) position: , mismatch: 9, identity: 0.735

gcttacctgtaaaagtaaaatatttaggacaagc	CRISPR spacer
ctagataagtaaaagtaaaatattaaagacaagc	Protospacer
 .  *.  **************** *.*******

45. spacer 20.21|4565454|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019763 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp36, complete sequence) position: , mismatch: 9, identity: 0.735

gcttacctgtaaaagtaaaatatttaggacaagc	CRISPR spacer
ctagataagtaaaagtaaaatattaaagacaagc	Protospacer
 .  *.  **************** *.*******

46. spacer 27.7|5817590|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 9, identity: 0.735

atcagttaacaactgttcactgttttagtcggta	CRISPR spacer
gtttcctgataactgttcactgttttaattggta	Protospacer
.*.  .*.*.*****************.*.****

47. spacer 27.20|5818527|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.735

acacagcagaagtcaatagaaaaaacatctgaaa	CRISPR spacer
acaagattttagccaatagaaaaaaaatctgaaa	Protospacer
*** ...   **.************ ********

48. spacer 27.20|5818527|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN694459 (Marine virus AFVG_250M532, complete genome) position: , mismatch: 9, identity: 0.735

acacagcag----aagtcaatagaaaaaacatctgaaa	CRISPR spacer
----aatagtttaaagtccatagaaaaaacatatgaag	Protospacer
    *..**    ***** ************* ****.

49. spacer 6.4|2729009|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.706

gtaaaaatattcgtccagttaaattaaatgattc	CRISPR spacer
ttcctgatattggtccagttacattaaatgaagt	Protospacer
 *   .***** ********* *********  .

50. spacer 6.4|2729009|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.706

gtaaaaatattcgtccagttaaattaaatgattc	CRISPR spacer
ttcctgatattggtccagttacattaaatgaagt	Protospacer
 *   .***** ********* *********  .

51. spacer 6.4|2729009|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.706

gtaaaaatattcgtccagttaaattaaatgattc	CRISPR spacer
ttcctgatattggtccagttacattaaatgaagt	Protospacer
 *   .***** ********* *********  .

52. spacer 6.4|2729009|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 10, identity: 0.706

gtaaaaatattcgtccagttaaattaaatgattc	CRISPR spacer
ttaaaaaaattcatccagttaaatttgcccctta	Protospacer
 ****** ****.************ . .  **

53. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN850587 (Escherichia phage mistaenkt, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

54. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MK562502 (Shigella phage KPS64, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

55. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_028247 (Citrobacter phage Michonne, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

56. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MF158040 (Shigella phage Sf13, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

57. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MF158041 (Shigella phage Sf15, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

58. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MH920362 (Citrobacter phage Maleficent, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

59. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN342151 (Escherichia phage vB_EcoM_3HA14, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

60. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_041977 (Citrobacter phage Mordin, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

61. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MF158044 (Shigella phage Sf18, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

62. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MF327003 (Shigella phage Sf14, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

63. spacer 6.7|2729232|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NC_028808 (Escherichia phage SUSP1, complete genome) position: , mismatch: 10, identity: 0.706

cattttcttgattattcattatctaatccttaag	CRISPR spacer
tgatttcttgattattcattttctagtctccagt	Protospacer
.. ***************** ****.**...*.

64. spacer 10.19|3313462|37|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to MN096356 (Mycobacterium phage Bunnies, complete genome) position: , mismatch: 10, identity: 0.73

aaacctaatagaccaccagtaaccgcgctgaaaccag	CRISPR spacer
gcaccggtgagaccaccagtaaccccgctgacaccgc	Protospacer
. *** .  *************** ****** ***.

65. spacer 10.19|3313462|37|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to MF281061 (Mycobacterium phage Ksquared, complete genome) position: , mismatch: 10, identity: 0.73

aaacctaatagaccaccagtaaccgcgctgaaaccag	CRISPR spacer
gcaccggtgagaccaccagtaaccccgctgacaccgc	Protospacer
. *** .  *************** ****** ***.

66. spacer 12.12|3447613|34|NC_019676|CRISPRCasFinder,CRT,PILER-CR matches to MN062189 (Serratia phage MyoSmar, complete genome) position: , mismatch: 10, identity: 0.706

ttgctgcctggatttgtcacgagaagttttagca	CRISPR spacer
gctctgactggatttatcacgagaagttcgatgc	Protospacer
 . *** ********.************. *

67. spacer 20.3|4564136|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 10, identity: 0.706

tattaacagtaataatattaaaactagttttagc	CRISPR spacer
gattaatagtaaaaatattaaaactccctaaaaa	Protospacer
 *****.***** ************  .*  *.

68. spacer 20.3|4564136|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009717 (Bacillus thuringiensis strain HD682 plasmid pBGN_3, complete sequence) position: , mismatch: 10, identity: 0.706

tattaacagtaataatattaaaactagttttagc	CRISPR spacer
tattaacagtaataaaaataaaacattacctcac	Protospacer
*************** * ******    ..* .*

69. spacer 20.3|4564136|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053935 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

tattaacagtaataatattaaaactagttttagc	CRISPR spacer
tattaacagtaataaaaataaaacattacctcac	Protospacer
*************** * ******    ..* .*

70. spacer 20.3|4564136|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023183 (Bacillus cereus strain CC-1 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.706

tattaacagtaataatattaaaactagttttagc	CRISPR spacer
tattaacagtaataaaaataaaacattacctcac	Protospacer
*************** * ******    ..* .*

71. spacer 20.19|4565310|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 10, identity: 0.706

gagaatatcgaccattgcccgaccagtcaaaatg	CRISPR spacer
ccgtgtatcgaccattgccaggccagtcatgccg	Protospacer
  * .************** *.******* . .*

72. spacer 20.19|4565310|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 10, identity: 0.706

gagaatatcgaccattgcccgaccagtcaaaatg	CRISPR spacer
tggaatatcgacaattgaccgaccagattcacag	Protospacer
 .********** **** ******** .  *  *

73. spacer 20.19|4565310|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 10, identity: 0.706

gagaatatcgaccattgcccgaccagtcaaaatg	CRISPR spacer
tggaatatcgacaattgaccgaccagattcacag	Protospacer
 .********** **** ******** .  *  *

74. spacer 20.20|4565381|36|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021367 (Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence) position: , mismatch: 10, identity: 0.722

tttcctgagccgcacctaagcggctttttatttgat	CRISPR spacer
acaaaaaagccgcatcgaagcggctttttatttggt	Protospacer
 .    .*******.* *****************.*

75. spacer 20.20|4565381|36|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021363 (Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence) position: , mismatch: 10, identity: 0.722

tttcctgagccgcacctaagcggctttttatttgat	CRISPR spacer
acaaaaaagccgcatcgaagcggctttttatttggt	Protospacer
 .    .*******.* *****************.*

76. spacer 27.12|5817948|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022518 (Pantoea vagans strain FBS135 plasmid pPant2, complete sequence) position: , mismatch: 10, identity: 0.706

gagcgttcaggtaataaatattggtattaccgct	CRISPR spacer
ggttcgcccggtaataaatattgttatttccgca	Protospacer
*. .  .* ************** **** ****

77. spacer 24.3|5566503|37|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 11, identity: 0.703

cgtaaatagttttacttatcgcatatttaacgtaaag	CRISPR spacer
tggcaatagatttacttatagcatatttaaaatttta	Protospacer
.*  ***** ********* ********** .*   .

78. spacer 26.3|5766489|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

agggaaagagtttccagttccacagcacttactc	CRISPR spacer
tcatttccagttgccagtaccacagcacttaccc	Protospacer
  .     **** ***** *************.*

79. spacer 6.3|2728938|34|NC_019676|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 12, identity: 0.647

cattcagaaagattccagcttcatcaagacatac	CRISPR spacer
gtcggcgaaatattccagcttcatcgagacgcgt	Protospacer
  .   **** **************.****....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

312262 : 321517

Moraxella_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015111196.1\|312262_313372_+	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	3.3e-79	46.5
WP_015111197.1\|313368_314067_+	hypothetical protein	A0A0R6PKK0	Moraxella_phage	2.4e-19	31.2
WP_015111198.1\|314063_315104_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	5.8e-110	56.2
WP_015111199.1\|315256_317149_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	3.0e-112	39.3
WP_012411495.1\|317445_317691_-	photosystem I iron-sulfur center protein PsaC	C7EDU4	uncultured_marine_virus	5.3e-22	92.6
WP_015111200.1\|318089_319142_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_015111201.1\|319256_319823_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_015111202.1\|320044_321517_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	2.1e-44	45.2

DBSCAN-SWA_2

2011980 : 2055865

Klosneuvirus(20.0%)

tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015110984.1\|2011980_2013126_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_015112604.1\|2013247_2014510_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_015112605.1\|2014506_2015139_-	NYN domain-containing protein	NA	NA	NA	NA
WP_015112606.1\|2015309_2016911_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	5.5e-91	38.9
WP_015112607.1\|2017286_2018012_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_015112608.1\|2018333_2019161_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_044500650.1\|2019369_2020521_+	hypothetical protein	NA	NA	NA	NA
WP_015112610.1\|2020631_2021336_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015112611.1\|2021520_2022999_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	5.8e-47	36.1
WP_015112612.1\|2023257_2024283_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_015112613.1\|2024375_2025368_+	beta-ketoacyl-ACP synthase 3	NA	NA	NA	NA
WP_015112614.1\|2025473_2026355_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_015112615.1\|2026483_2027122_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_015112616.1\|2027221_2028259_+	AI-2E family transporter	NA	NA	NA	NA
WP_015112617.1\|2028340_2028634_+	DUF2288 domain-containing protein	NA	NA	NA	NA
WP_015112618.1\|2028698_2029253_-	YdcF family protein	NA	NA	NA	NA
WP_015112619.1\|2029640_2030726_-	tocopherol cyclase	NA	NA	NA	NA
WP_015112620.1\|2031034_2031670_+	hypothetical protein	NA	NA	NA	NA
WP_015112621.1\|2031952_2032162_+	hypothetical protein	NA	NA	NA	NA
WP_015112622.1\|2032435_2032870_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_015112623.1\|2033078_2035721_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	5.6e-117	34.2
WP_015112624.1\|2035968_2037039_+	LOG family protein	NA	NA	NA	NA
WP_015112625.1\|2037143_2037539_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_015112626.1\|2037635_2039462_-	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_015112627.1\|2039888_2041208_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_015112629.1\|2041331_2043053_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_157373998.1\|2043177_2043345_-	hypothetical protein	NA	NA	NA	NA
WP_015112630.1\|2043388_2044564_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_015112631.1\|2044544_2044883_-	hypothetical protein	NA	NA	NA	NA
WP_015112632.1\|2044998_2046966_-	ATP-binding protein	A0A2H4UTU5	Bodo_saltans_virus	9.9e-10	33.9
WP_015112633.1\|2047041_2048307_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_015112634.1\|2048564_2049248_-	response regulator transcription factor	NA	NA	NA	NA
WP_015112635.1\|2049372_2050539_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_015112636.1\|2050991_2051534_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_015112637.1\|2051605_2053276_+\|tail	phage tail sheath family protein	H6WFT7	Cyanophage	5.3e-20	31.4
WP_015112638.1\|2053531_2054017_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015112639.1\|2054073_2054541_+\|tail	phage tail protein	NA	NA	NA	NA
WP_044499856.1\|2054670_2055162_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015112641.1\|2055163_2055472_+	hypothetical protein	NA	NA	NA	NA
WP_015112642.1\|2055493_2055865_+\|tail	phage tail assembly protein	NA	NA	NA	NA

DBSCAN-SWA_3

4260119 : 4331862

Acinetobacter_phage(16.67%)

transposase,tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015114436.1\|4260119_4261163_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_015114437.1\|4261092_4262148_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.9e-32	35.2
WP_015114438.1\|4262249_4263071_-	DNA adenine methylase	M4T136	Cyanophage	1.7e-51	40.7
WP_015114439.1\|4263137_4263857_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_015110984.1\|4266345_4267491_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_015114440.1\|4267643_4268741_-	hypothetical protein	NA	NA	NA	NA
WP_015114441.1\|4268856_4272258_-	virulence factor SrfB	NA	NA	NA	NA
WP_015114442.1\|4272353_4274903_-	hypothetical protein	NA	NA	NA	NA
WP_085999824.1\|4276164_4277784_+	PAS domain-containing protein	NA	NA	NA	NA
WP_015114445.1\|4277846_4278272_-	VOC family protein	NA	NA	NA	NA
WP_015114446.1\|4278390_4279488_-	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_015114447.1\|4279532_4280306_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_015114448.1\|4280674_4280902_+	hypothetical protein	NA	NA	NA	NA
WP_015114449.1\|4281246_4282086_+	hypothetical protein	NA	NA	NA	NA
WP_015114450.1\|4282112_4283279_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015114451.1\|4283433_4285674_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.8e-47	30.0
WP_015114452.1\|4285679_4286891_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015114453.1\|4286931_4287897_+	glycosyl transferase	NA	NA	NA	NA
WP_015114454.1\|4287903_4288914_+	nucleotide-diphospho-sugar transferase superfamily protein	NA	NA	NA	NA
WP_015114455.1\|4288915_4289842_+	hypothetical protein	NA	NA	NA	NA
WP_015114456.1\|4290061_4290520_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_044500940.1\|4290816_4291359_+\|transposase	transposase	NA	NA	NA	NA
WP_015114458.1\|4293171_4297299_+	replicative DNA helicase	G9BWB0	Planktothrix_phage	8.8e-125	27.9
WP_015114459.1\|4297352_4297874_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_015114460.1\|4297953_4298277_-	phasin family protein	NA	NA	NA	NA
WP_044500942.1\|4298412_4298721_+	TIGR03792 family protein	NA	NA	NA	NA
WP_015114462.1\|4298760_4299420_-	DUF2834 domain-containing protein	NA	NA	NA	NA
WP_015114463.1\|4299441_4300122_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015114464.1\|4300316_4301414_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_015114465.1\|4301773_4302133_-	rhodanese-like protein	NA	NA	NA	NA
WP_172641491.1\|4302348_4303980_+	DUF3352 domain-containing protein	NA	NA	NA	NA
WP_015114467.1\|4304099_4304591_+	hypothetical protein	NA	NA	NA	NA
WP_015114468.1\|4304699_4305221_+	hypothetical protein	NA	NA	NA	NA
WP_015114469.1\|4305294_4307265_+	VgrG-related protein	NA	NA	NA	NA
WP_015114470.1\|4307495_4307783_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_015114471.1\|4307695_4309489_-	GAF domain-containing sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.3e-08	25.8
WP_157374075.1\|4309842_4310868_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015114473.1\|4311098_4311500_+	GPW/gp25 family protein	V5YTB2	Pseudomonas_phage	2.2e-09	45.2
WP_015114474.1\|4311658_4313824_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_015114475.1\|4313930_4314974_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015114476.1\|4315021_4316263_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_015114477.1\|4316293_4318483_+	hypothetical protein	NA	NA	NA	NA
WP_157374242.1\|4318607_4321289_+	hypothetical protein	NA	NA	NA	NA
WP_015114479.1\|4321341_4323690_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_015114480.1\|4323774_4325529_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_015114481.1\|4325589_4326159_+	DUF1877 family protein	NA	NA	NA	NA
WP_044500948.1\|4326358_4326589_-	addiction module protein	NA	NA	NA	NA
WP_015114484.1\|4326653_4326920_-	hypothetical protein	NA	NA	NA	NA
WP_015114485.1\|4326945_4327278_-	hypothetical protein	NA	NA	NA	NA
WP_157374078.1\|4327286_4327445_+	hypothetical protein	NA	NA	NA	NA
WP_015114486.1\|4328814_4331190_+	hypothetical protein	NA	NA	NA	NA
WP_052314760.1\|4331202_4331862_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_4

6103104 : 6141172

Helicobacter_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015112402.1\|6103104_6103512_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	5.4e-27	40.5
WP_044499824.1\|6103596_6104934_+\|transposase	transposase	D5GVY6	Campylobacter_virus	9.4e-20	25.4
WP_015115938.1\|6104910_6105186_-	hypothetical protein	NA	NA	NA	NA
WP_015115939.1\|6105269_6105617_-	hypothetical protein	NA	NA	NA	NA
WP_015115940.1\|6105677_6106358_-	DUF1822 family protein	NA	NA	NA	NA
WP_015115941.1\|6106434_6107331_-	hypothetical protein	NA	NA	NA	NA
WP_015115942.1\|6107567_6108341_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015115943.1\|6108342_6108558_-	hypothetical protein	NA	NA	NA	NA
WP_044500369.1\|6108558_6108756_-	hypothetical protein	NA	NA	NA	NA
WP_015115944.1\|6108748_6109075_-	hypothetical protein	NA	NA	NA	NA
WP_157374159.1\|6109114_6109255_-	hypothetical protein	NA	NA	NA	NA
WP_015115945.1\|6113318_6114140_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.8e-12	28.4
WP_015115946.1\|6114551_6116687_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_044501174.1\|6117322_6117550_+	hypothetical protein	NA	NA	NA	NA
WP_015111366.1\|6117697_6118510_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015115948.1\|6118735_6119128_-	hypothetical protein	NA	NA	NA	NA
WP_015115949.1\|6119117_6119348_-	hypothetical protein	NA	NA	NA	NA
WP_044501176.1\|6119706_6119934_+	hypothetical protein	NA	NA	NA	NA
WP_015115951.1\|6120661_6124234_-	AAA-like domain-containing protein	NA	NA	NA	NA
WP_015115952.1\|6124230_6125520_-	AAA-like domain-containing protein	NA	NA	NA	NA
WP_015115953.1\|6125848_6127024_+	hypothetical protein	NA	NA	NA	NA
WP_015115954.1\|6127119_6129210_+	hypothetical protein	NA	NA	NA	NA
WP_015115955.1\|6131279_6132134_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.7e-20	31.8
WP_015115956.1\|6132090_6132945_+	ABC transporter permease	NA	NA	NA	NA
WP_015115957.1\|6133136_6134204_-	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015115958.1\|6134313_6136137_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.5e-32	33.1
WP_044501182.1\|6136160_6137159_-	aldo/keto reductase	NA	NA	NA	NA
WP_015115960.1\|6137201_6137990_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_015115961.1\|6138029_6138689_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_044499824.1\|6139342_6140680_-\|transposase	transposase	D5GVY6	Campylobacter_virus	9.4e-20	25.4
WP_015112402.1\|6140764_6141172_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	5.4e-27	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019676

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection