CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018485	Methylocystis sp. SC2, complete genome	2 crisprs	csa3,WYL,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018485_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018485_1

641736-641830

Orphan

Consensus_repeat	Method
GATCCCGACAATGACGGCACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018485_1

>merge|NC_018485|1|641736-641830|CRISPRCasFinder
GATCCCGACAATGACGGCACGCTTTCAAAGGACGAATTTATGACGATGGTCTCCGCCATGTTCAAGGATGCGGATCCCGACAATGACGGAACGCT

>NC_018485|1|1|641736-641830|CRISPRCasFinder
GATCCCGACAATGACGGCACGCT	TTCAAAGGACGAATTTATGACGATGGTCTCCGCCATGTTCAAGGATGCG
GATCCCGACAATGACGGAACGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_018485.1\|WP_148277191.1\|634150_635173_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224771
NC_018485.1\|WP_014890081.1\|643263_644217_+\|YVTN-family-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|274824
NC_018485.1\|WP_083481414.1\|633898_633976_+\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|178960
NC_018485.1\|WP_014890076.1\|637272_637638_-\|STAS/SEC14-domain-containing-protein	unknown	unknown	gnl\|CDD\|378774
NC_018485.1\|WP_014890080.1\|641953_643132_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274821
NC_018485.1\|WP_014890086.1\|647335_647863_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_018485.1\|WP_041926773.1\|629926_630835_-\|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase	unknown	unknown	gnl\|CDD\|235003
NC_018485.1\|WP_014890089.1\|649177_649732_-\|hypothetical-protein	unknown	unknown	unknown
NC_018485.1\|WP_014890075.1\|635947_637279_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236945
NC_018485.1\|WP_014890077.1\|637964_638693_+\|DUF1614-domain-containing-protein	unknown	unknown	gnl\|CDD\|377912
NC_018485.1\|WP_014890083.1\|645259_646108_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|163573
NC_018485.1\|WP_014890087.1\|648043_648919_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|235628
NC_018485.1\|WP_014890078.1\|638995_641395_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_018485.1\|WP_014890082.1\|644362_645109_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274822
NC_018485.1\|WP_014890071.1\|632450_633551_-\|formylmethanofuran-dehydrogenase	unknown	unknown	gnl\|CDD\|239162
NC_018485.1\|WP_014890084.1\|646136_646337_-\|hypothetical-protein	unknown	unknown	unknown
NC_018485.1\|WP_014890085.1\|646367_647279_-\|hypothetical-protein	unknown	unknown	unknown
NC_018485.1\|WP_041927117.1\|648915_649140_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|378250
NC_018485.1\|WP_014890070.1\|630822_632460_-\|formylmethanofuran-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|274438
NC_018485.1\|WP_014890074.1\|635217_635838_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NC_018485.1\|WP_148277191.1\|634150_635173_+\|c-type-cytochrome	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	8.67398e-86
NC_018485.1\|WP_014890081.1\|643263_644217_+\|YVTN-family-beta-propeller-repeat-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	0
NC_018485.1\|WP_083481414.1\|633898_633976_+\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|178960	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA.	1.87479e-06
NC_018485.1\|WP_014890076.1\|637272_637638_-\|STAS/SEC14-domain-containing-protein	gnl\|CDD\|378774	pfam11964, SpoIIAA-like, SpoIIAA-like. These proteins adopt an alpha/beta SpoIIAA-like fold, similar to that found in STAT (pfam01740). They adopt open and closed conformations arising from different arrangements of their alpha-2 and alpha-3 helices. They may be membrane associated and may function as carriers of non-polar compounds.	3.81012e-27
NC_018485.1\|WP_014890080.1\|641953_643132_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|274821	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.52699e-168
NC_018485.1\|WP_014890086.1\|647335_647863_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.57912e-95
NC_018485.1\|WP_041926773.1\|629926_630835_-\|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase	gnl\|CDD\|235003	PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional.	6.17924e-165
NC_018485.1\|WP_014890075.1\|635947_637279_+\|sensor-histidine-kinase	gnl\|CDD\|236945	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB.	2.25509e-36
NC_018485.1\|WP_014890077.1\|637964_638693_+\|DUF1614-domain-containing-protein	gnl\|CDD\|377912	pfam07758, DUF1614, Protein of unknown function (DUF1614). This is a family of sequences coming from hypothetical proteins found in both bacterial and archaeal species.	2.49338e-62
NC_018485.1\|WP_014890083.1\|645259_646108_+\|ABC-transporter-permease	gnl\|CDD\|163573	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.2835e-117
NC_018485.1\|WP_014890087.1\|648043_648919_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	8.26496e-28
NC_018485.1\|WP_014890078.1\|638995_641395_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.70252e-30
NC_018485.1\|WP_014890082.1\|644362_645109_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274822	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.47117e-112
NC_018485.1\|WP_014890071.1\|632450_633551_-\|formylmethanofuran-dehydrogenase	gnl\|CDD\|239162	cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	7.42118e-56
NC_018485.1\|WP_041927117.1\|648915_649140_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|378250	pfam09723, Zn-ribbon_8, Zinc ribbon domain. This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.	6.46121e-11
NC_018485.1\|WP_014890070.1\|630822_632460_-\|formylmethanofuran-dehydrogenase-subunit-A	gnl\|CDD\|274438	TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.	0
NC_018485.1\|WP_014890074.1\|635217_635838_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.66224e-55

>NC_018485.1|WP_014890078.1|638995_641395_+|TonB-dependent-receptor
MRYVKQVSLLALCASIATTARAQQALPTIEVGGAPLRSTARPPVQTTPSTQRAPAGRASVTSAPATPAAPASPIVRYAVPAATYTITGNELQNTRAFNLTDNLLRQAPGVTVNDVAGGPFLPEVDFRGFVASPIAGTPQGLAVYQNGIRVNEAWGDNVYWDMIPSVAIDRFTLVTGNPLFGLNAIGGAVTLDMKTGFTWQGFELDGRFGSRGRRQGTMQHGLISGPFATYMAMEALGDDGYRQFSGAHIKRFYGDVGYRGESGEIHANVTLANNKFGVSGPAPVDLTNLDESAVFTTPQTIKNTLSMFDINGVFQATPTWKLFGDMHYRAFDQARVDGNTTEFECEEGEEFCETDAGDTNIPNFFNGQVPLGAVDRTWTRSRTVGGTVQVTNDDLYFGFHNKITFGVSYDHGWTAFSANEELGIIQPNLVVGGFGYIVEEQATGISSVSVRAANDYLGVYALDSLDLTDDLKVTAGARFNRAGISLYDMRGTTLNGNGVFTRINPVAGLTYKILPNVSAYASYSEANRAPTPLELGCADPNRPCLIDNFLVADPPLKQVEAQTIEAGFRGDLVMPTLLPAYADALPGNLNWSLGVYRTYSFNDILSVPSAINGRGYFTNAGTTLRQGFESSFRYTTERVNAYLNYTLTDATFRSTIVLGAPDNPVTGIFGTGGSILVTPGANLTSVPRHRFKSGIDFAVNPLWKIGADVVYSSGPWIRGDEINIAGTLPSYAILNFRTSYQLGPNIQVYGLLENATNTRARSFGTFFDTNDISFLAFNNPRMVSIGPPLGVYGGVKITY
>NC_018485.1|WP_014890077.1|637964_638693_+|DUF1614-domain-containing-protein
MNSQHVDYLPLPPILYAVFLGALIALFLLIQFGVLRYAFGRIGLSSKYATLLLLASLLGSYVNIPIAHFADERVVPQEMIDFFGRRYVVPVVVDWPGMILAVNVGGAVIPLLLSIYLLARNRIWIVAALATAIVAVVVHYFARIVPGAGISVPILAPPLLSAALAILLSRDFAAPVAYVSGSLGTLIGADLLNLDKIEGIGTPIVSFGGAGTFDGIFITGILAVLIASLPLRRKTTGVSATT
>NC_018485.1|WP_014890076.1|637272_637638_-|STAS/SEC14-domain-containing-protein
MIEQLSNFPENVVAIVCKGRVTKADYDAVLAPAVRDALEKHDKIRIYYEIAPDFSGFDPGAMWEDFRVGMEHLTRWERVALVTDAEWIKHTMQFFSFMMPGEMKAFSTAQADQARDWIIAQ
>NC_018485.1|WP_014890075.1|635947_637279_+|sensor-histidine-kinase
MLRRLSLRLRLSLLLGVVLALGLALGVGLLVLHAGARVRAEADGATRLARELIEATLTRLDAAPDPQAEIARLLADARRLRHVRVALAGEETPAREDVDRSPQWFTRLVLPNDAVTRIETGRGAAIMIAPNPADEIAEIWQEIVWLAIGGAGIALAAFALVSLAVSRTLRPVATLAEGLKRLERGEHSMRVPADGSPEFVIIAERINALAATLQRLDDENRKLVRRMIHVQDEERKDIARDLHDEIGPFLFAVRAGVGALARRATASGADPNRLAADCARIDAQIAALQQVNRRILGRLRPAALEEMGLADALEALAQGWRETNPTVAIALSLDGASAEIEEATALTAYRIVQEALANALRHSGADRVEVAVKRSKDALHIVVRDNGAGLQATSSASSGGLGLRGMSERVGALGGALTLANDAKGGARLTASLPMREGGAARH
>NC_018485.1|WP_014890074.1|635217_635838_-|response-regulator-transcription-factor
MRVLIVDDHPIIVSGCAAMLAGEGDIDVVDARDAETGLAVFVAQKPDVTVVDIGLPGVSGFELTRRILAADPRARIVIFSMNDDPIFAARAIQMGARGYVTKNDDPYLLLTAVREVASGGVFLMPKIANQLAFEKSGASASPLSALTARELEILRMLGRGLGTTEIADATQVSYKTVANSCSIMKRKLGARTPMELMRIALEHKLT
>NC_018485.1|WP_148277191.1|634150_635173_+|c-type-cytochrome
MFISLVSLLFIAATARAEPSNVKTLLEDAKQNFRPIAVPSAANDSATAARIELGRRLFFENRVSMDGNVSCAHCHLPDKQASDGLPKAIGVFGKENPRNAPSVFNAALNFKQHWRGERESLEDQAEKSLLGPASFGNPDQATAMSKLKAVPAYAGAFAKAFPGDPDPINSKNWGVAVGAFERTLLTPSKFDAFLAGDVSALTKQQQAGLRKFIDLGCASCHNGAGVGGDSFQKFGVVSDYWKATGITTPDKGRADVSKNDADLYVFKVASLRNVAKTAPYFHDGSVDDLSKAVKIMGKTQLGQDLPEKDAADIVAFLGALTGPVPANYSPPEPFPDAEGK
>NC_018485.1|WP_083481414.1|633898_633976_+|pyrroloquinoline-quinone-precursor-peptide-PqqA
MAWTTPVIVEVCVGMEITSYESAEI
>NC_018485.1|WP_014890071.1|632450_633551_-|formylmethanofuran-dehydrogenase
METATLDGKAIALGDAYRHAGKILKEAAFPLIAGLGADVAGARAAILLAERLKGAFDHLASRETLADLDVKRSFGMFTTTANEARLRGDCVVMIGPGLTRAWPGMLERLALAEPPRRGAQAQQPRKVIWVGPDGDEAKAVPGAKVIPASEQELSGVLAAWRARFGGRPVALGAEKIALIDGLVETLRNARFGVFVWSASTLDPLAIEMLQALVIELNATTRFTGVHIGGRSGASGVTQAAGWMTGFPPRTGFGRGYPEHDPWRFEASRLVDSGEADAAMWISAFDGEKPAWSRADIPLITLAPAQAAPSRGLFIEVGQPGVTHDSVLMSQETGGMTLRKASAPTDAPSVAQAIGAILAEVSEGAWR
>NC_018485.1|WP_014890070.1|630822_632460_-|formylmethanofuran-dehydrogenase-subunit-A
MALTVLRGGHVVDPATDQDAIGDVWFEDGRIVERPEGRSADKEIDVSGHIVMAGAIDIHSHIAGGNVNTARLLLPELHRAIRARLADTPLSTAKWSSYETGRLYAQMGFTTVVEPAMAPHHALQTHLEFNDVPIIDKGALTVLGNDDFLLGMLRDGETDGAINDYVAQTVENTRSLGLKCINPGGVEAFKDNMRAFGLDDVVPFYGLTSRQIFQALQKSTQAVGIAHPLHLHMNNLGLAGNIDTALATIDAAQGLPLHLAHVQFYAYGKEGKNGFSSAGALFAEKINANPNVSVDVGQVMFSDTVTISSDVLKQFNSLPGAIPKKGAIFDGDANGGGIVPYVYKISNYYNAIQWAAGLELFLLIDNPEQVFFTTDHPNGGPFTTYPELFALLMSADLRAQHLARLPAEVLEQTTLPSISREYTLYEIAQMSRSGAAKLFGFVDRGRLSPGAVADIAVYKPGRDVAGMFRRAALVFKDGVLVVRDGQVSHYTRGKTLHIRPRYDQQITKRLDSYYDDLYGLPRSIFDVPDAALPHKDAFAEVPCRI
>NC_018485.1|WP_041926773.1|629926_630835_-|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase
MPDIIRNGVTIDDNFAEAFPMSGTGILITAPNAKWARQAALTMTGFATSVIGCGCEAGIDREVPPEETPDGRPGVRALLFAMSSKDAEKQLVNRLGQCVLTCPGSAVYSTVAGEFEIKVGDAVRQFGDKWQMSKVVDGRRYWRVPVMDGEFFCEGKVGLTKKSVGGGNLLIMGADWEKTMRATEAAVSAIDDVADAIAPFPGGIVRSGSKVGSKYKGMSASTNDAYCPTLRGVTKSELDADIGCVLEIVIDGLTDNAVREAMRAGLHAIIEMGPEQGAKRVGAGNYGGKLGPFHYHLKELLP
>NC_018485.1|WP_014890080.1|641953_643132_+|ABC-transporter-substrate-binding-protein
MKSLVAAFCFALFAAPVAAETVNVKVGVLRETHARETLSILDIPAADDTLAGALMGAADNNTTGKFTNQTFEAVDAKLEDGDDVAAALDALLDKGALLIIADLSPERLLAASERAKPKGALLFNVSATDDRLREGDCRANVIHVAPTRSMLADGLAQYLIWKQWRRWLLIKGSHPEDELLAQAFRNSAKKFGAKVVEERVYEDAGGGRRSDSGSVQTQRQIPVLTQNAPAYDALIAADESEVFGGYLPYRTWDPRPVAGSGGLTPTSWDPSHEQWGARQLQNRFTQTFRRLMNARDNSAWTAMRMIGEAATRTGSNDPEKLRLHLLGADFSIAAFKGVRLTLRPWNQQLRQPILLSDGRMIVSVSPQEGFLHQTSELDTLGVDQPESKCKLK
>NC_018485.1|WP_014890081.1|643263_644217_+|YVTN-family-beta-propeller-repeat-protein
MWVAALLATLIAPAHAYQAYVSNEKGNSITILDTEKLEATATVKVGRRPRGIALNKDGSELYICAGDDDAIQVLDTKTLKVTGKLPSGPDPELLTLSPDGDVIYVSNENDNLVTLIDVKKKEMIGDIPVGVEPEGMAISPDGKLLVNTSETTNMAHLIDTQSKEIVANILVDSRPRFAEFKRDGSELWVSSEVGGTVAIIDPAKRALKQKISFDIPAMSKEAIQPIGISFTRDGKRAFVALGPANRVAVIDAETKKIEKYLLVGQRVWHLAFTPDEKYLLTANGVSNDVSVIDVASLKVVKSIPVGAFPWGVVVAPQ
>NC_018485.1|WP_014890082.1|644362_645109_+|ATP-binding-cassette-domain-containing-protein
MTPALAIRNVSHAYGARKALDDVSFSVPAGNFTVLLGLNGAGKSTLFSLITRLYAARHGEIDIFGHDVMREPGAALRQLGVVFQARTLDLELSVMQNLLYHAALHGIGPIDARRLGQAALARAGLADRARDKARALSGGQMRRVEIARALLHDPRLLLLDEPTVGLDIKARADLLALVRDLVRDQHLGVLWTTHLVDEIADDDQVVILHQGKVLATDRAREIVAAQGAKNIGDAFARIAGIGQEKLSA
>NC_018485.1|WP_014890083.1|645259_646108_+|ABC-transporter-permease
MTDAAAPLTAGDKKGFTLRQYLICLAGVVWREGLRFLHQRERFVSALVRPLVWLFIFAAGFRQVLGVSIIPPYETYVLYEVYIAPGLMAMIQLFNGMQSSLSMVYDREMGNMRTLLVSPFPRWFLLSSKLLAGVAVSILQVYAFLLIAYFWEIEPPTKWGYLALLPALALSGLMLGALGMLLSSLIKQLENFAGVMNFVIFPMFFASSALYPLWRVKESSPWLYYICEVNPFTHAVELIRFAFYEKVAWTSLAIVFAYTSAFLVAAIVAYDPGRGMLMRRGG
>NC_018485.1|WP_014890084.1|646136_646337_-|hypothetical-protein
MLKSTAMTTIVLAMLLSPPAAIASPWTEGQAEWFRHGARHGRWDCYGKCPEGRAHRDTQRHHYRQR
>NC_018485.1|WP_014890085.1|646367_647279_-|hypothetical-protein
MFGSGFGTLTARRACALAAAALIAAGVPPAKAQLVLPGAVAPTPEGTVASPGQAKKRSIGGEMGAAAGPAIMPKAPAEDALVGKILKRDGEGSAIEFSRAGADLQVAKLTLVGDDLRRSGEACRVEVAGTPLKLSARQSDTGLRRYQIAFPACAFTFDVLDGAILVTNEGKACELKDAGCRADPEGLWGMSADEIDPKKGEEMLGVRARVEKTVRSTFRALYDQYKKEKAIRNFIVKEQAGFSSWREEVCRSYAREPDFGYCALRLTEARAIALGAQLATGVKLPPGVAEEVAAENTKKDEKK
>NC_018485.1|WP_014890086.1|647335_647863_-|translation-initiation-factor-IF-3
MKSIAAPQKEGPRINREIRAREVQLIDSEGKNHGVVQLPDALGIAEAAGLDLVEIAPNSTPPVCKILDYGRFRFAEQKKAAEARKKQKVVEVKEIKLRPGIDDHDYGVKMKAVRRFFEEGDKVKVTLRFRGREIAHQDIGYRLLSRVKAETATLAKVELEPSMEGRQMVMVLAPR
>NC_018485.1|WP_014890087.1|648043_648919_-|alpha/beta-fold-hydrolase
MTSAATLLGARRIVVPANGIEFEVFEAGAGDRLALLLHGFPQHAVMWRHLVGPLAAAGYRVWAVNQRGYGATTRPAEKDAYSLAALTADVAGLIDAATPASVSLIGHDWGGFVAWVVAIRKLRPIDALVVLNIPHPLCFRRALEQEWRQKLKSAYTAFFQLPWLPERLLSARRGAGAAWLMLRAAGRDGVFSRAAMDIYRANVAAPGAASAMLDWYRAAGRDILAAEDLDAPIDAPTLVVWGREDVALGESCLDGTERYVRDLRIERLPGVSHWTPEDAPEKVNELILGFV
>NC_018485.1|WP_041927117.1|648915_649140_-|zinc-ribbon-domain-containing-protein
MPLFAYRCSDCAHQFETLSRFDEIPECPACGGAHVERQLSLIARPAAGGESVESCAAMAGGSPCPSCPALAGQM
>NC_018485.1|WP_014890089.1|649177_649732_-|hypothetical-protein
MKWRFNYEERAAAARAAHQEIGRTFARLRNRNDEQDPATIAWKTAIARFHDALRLAYPADFGEDIERLKAGDPRGLEGVIRFLEADPMFFGSGYAKADLIRFINRMPLTEHQAARLRAVALAIVERRASQEFRRYCRLAAKVNHPALREALRIRAACGDPAVARRARWMLAYVESPPCARRAGR

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Crispr_ID: NC_018485_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018485_2

2878680-2878777

Orphan

Consensus_repeat	Method
CCTTCTCCCGCTTGCGGGAGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018485_2

>merge|NC_018485|2|2878680-2878777|CRISPRCasFinder
CCTTCTCCCGCTTGCGGGAGAAGGAAGAACGGCGACGCTTCGCCATTGCGTTTGCGGCGATGATTGGCGCTTGCCCTTCTCCCGCTTGCGGGAGAAGG

>NC_018485|2|2|2878680-2878777|CRISPRCasFinder
CCTTCTCCCGCTTGCGGGAGAAGG	AAGAACGGCGACGCTTCGCCATTGCGTTTGCGGCGATGATTGGCGCTTGC
CCTTCTCCCGCTTGCGGGAGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018485.1\|WP_014892280.1\|2878815_2879511_+\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NC_018485.1\|WP_014892287.1\|2883448_2883643_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_018485.1\|WP_014892273.1\|2872349_2873033_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NC_018485.1\|WP_014892274.1\|2873029_2874190_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|188554
NC_018485.1\|WP_014892279.1\|2877774_2878641_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_018485.1\|WP_014892270.1\|2870121_2870715_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379901
NC_018485.1\|WP_014892284.1\|2881812_2882670_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NC_018485.1\|WP_158491323.1\|2884776_2885232_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350353
NC_018485.1\|WP_014892271.1\|2870778_2871048_+\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428
NC_018485.1\|WP_083858773.1\|2874468_2874603_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NC_018485.1\|WP_014892277.1\|2875057_2876839_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NC_018485.1\|WP_014892276.1\|2874635_2875061_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NC_018485.1\|WP_014892278.1\|2876913_2877576_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_018485.1\|WP_014892282.1\|2880397_2881369_+\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NC_018485.1\|WP_014892288.1\|2883644_2884814_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NC_018485.1\|WP_041927400.1\|2883221_2883449_+\|DUF1902-domain-containing-protein	unknown	unknown	gnl\|CDD\|312506
NC_018485.1\|WP_014892272.1\|2871069_2872353_+\|selenium-binding-protein	unknown	unknown	gnl\|CDD\|377548
NC_018485.1\|WP_014892285.1\|2882669_2883149_+\|hypothetical-protein	unknown	unknown	unknown
NC_018485.1\|WP_014892290.1\|2885268_2886486_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181674
NC_018485.1\|WP_014892281.1\|2879626_2880328_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791

Protein	Function_ID	Function_description	E-value
NC_018485.1\|WP_014892280.1\|2878815_2879511_+\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	2.55178e-114
NC_018485.1\|WP_014892287.1\|2883448_2883643_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.05433e-05
NC_018485.1\|WP_014892273.1\|2872349_2873033_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	2.22315e-23
NC_018485.1\|WP_014892274.1\|2873029_2874190_+\|c-type-cytochrome	gnl\|CDD\|188554	TIGR04039, MXAN_0977_Heme2, di-heme enzyme, MXAN_0977 family. This model describes a subfamily of di-heme proteins related to the di-heme cytochrome c peroxidase and to MauG (methylamine utilization G), an enzyme that performs a tryptophan tryptophylquinone modification to the methylamine dehydrogenase light chain.	4.61192e-68
NC_018485.1\|WP_014892279.1\|2877774_2878641_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.88483e-152
NC_018485.1\|WP_014892270.1\|2870121_2870715_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379901	pfam16925, TetR_C_13, Bacterial transcriptional repressor C-terminal.	6.35451e-28
NC_018485.1\|WP_014892284.1\|2881812_2882670_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	8.26353e-176
NC_018485.1\|WP_158491323.1\|2884776_2885232_-\|hypothetical-protein	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	5.49168e-50
NC_018485.1\|WP_014892271.1\|2870778_2871048_+\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	3.2461e-28
NC_018485.1\|WP_083858773.1\|2874468_2874603_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	1.11991e-10
NC_018485.1\|WP_014892277.1\|2875057_2876839_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NC_018485.1\|WP_014892276.1\|2874635_2875061_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	1.70158e-20
NC_018485.1\|WP_014892278.1\|2876913_2877576_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.74134e-97
NC_018485.1\|WP_014892282.1\|2880397_2881369_+\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	6.15804e-48
NC_018485.1\|WP_014892288.1\|2883644_2884814_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NC_018485.1\|WP_041927400.1\|2883221_2883449_+\|DUF1902-domain-containing-protein	gnl\|CDD\|312506	pfam08972, DUF1902, Domain of unknown function (DUF1902). Members of this family of prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated.	3.80469e-09
NC_018485.1\|WP_014892272.1\|2871069_2872353_+\|selenium-binding-protein	gnl\|CDD\|377548	pfam05694, SBP56, 56kDa selenium binding protein (SBP56). This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.	1.50349e-49
NC_018485.1\|WP_014892290.1\|2885268_2886486_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181674	PRK09148, PRK09148, LL-diaminopimelate aminotransferase.	0
NC_018485.1\|WP_014892281.1\|2879626_2880328_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.97918e-70

>NC_018485.1|WP_014892279.1|2877774_2878641_+|acetylglutamate-kinase
MTDAVDTALQQARILMQALPHMLRYDDAIVVVKYGGHAMGDDQVARDFSRDMVLLEQSGVNPVVVHGGGPQIGAMLKRLGVESRFADGLRITDEETMDVVEMVLAGSINKQIVGYINSEGGRAIGLTGKDGRMVTAKKLERPDGVDLGFVGEPDKVDTTVLDQVLGRELIPVLAPVAEGPRGESYNVNADTFAGAIAGALHAKRLIFLTDVPGVLDKDKQIIQELKVGDIPGLIAEGVITGGMIPKVETCMYAIERGVEGVVILDGKLPHAVLIELLTDHGAGTLITR
>NC_018485.1|WP_014892278.1|2876913_2877576_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MQETAETDFTEQGRLLFAGPCDFIFASAKASDLPVIGPPEIAFAGRSNVGKSSLLNALTKRKTLARVSNTPGRTQQLNFFALGGGPDAERLRLVDMPGYGYAAVGKEKVANWSQLMRDYLRGRASLARVFVLVDGRRGVKPLDEEMFDLLDQSAVSYQVILTKHDELKMAERADVIAATTKALEKRPAAFPEVIFTSAHSGEGIPELRGAVARLLSERNA
>NC_018485.1|WP_014892277.1|2875057_2876839_+|membrane-protein-insertase-YidC
MSENVKNMILAAALSLVFIGLWDYFYAFPEIDKQRRAQTQQERLAQVPKLGAPEQKTAAAPPVKVAPKTRAEALALSPRIAIDTRSISGSIALKGGRIDDVSLKNYRETVDPSSPIITLLSPEDGPSPYYAELGYLTAETENAPVLPTTETLWTADADVLTTAKPVTLTWDNGRGLVFKRVISVDDEYLFTVKDSVENKAANPITLFNYARVSRVGHPPSAGYAALHEGFVGVVGDAGQEVTYDKIEKEDNAVKIFKGVGGWVGLTDKYWAAVVAPDQNLPMEARYASMGGAVKTYQADTVSDQKTVEPGKSAEATTYVFAGAKVVDVLDAYKTSPGLKRFDLLIDWGWFYFITRPMFRLIDFLYKLLGNFGLAILAVTVIVKLAFLPLANKSYQSIAKMKAIQPRIKELKEKYGDDKHKFNMEQMELFKREKVNPASGCLPVIVQIPVFFSLYKVLVVTIEMRHAPFFGWIKDLSAPDPTNVFNLFGVLPFDPTHVAIFGPYLALGVWPLLMGVSMWLQMKMNPEPADEIQKTMFAWMPVIFTFTMGGFASGLLIYWTWNNLLSIVQQGVIMKRAGVKFEFWDNLRKTFQRA
>NC_018485.1|WP_014892276.1|2874635_2875061_+|ribonuclease-P-protein-component
MKAQVPAEDEKSPRPETLRRRADFVRAARGARVALPAFTVQMAPREISDSHAPARFGLTVTRKVAGAVGRNRIRRRLREALRLGGALGAKPGRDYVFVARPVSLSAPFAELLAQMTEGLARLNDRGAAHPRRKQEDRLTRP
>NC_018485.1|WP_083858773.1|2874468_2874603_+|50S-ribosomal-protein-L34
MKRTFQPSKIVRKRRHGFRARMATVGGRNVIAARRARGRKRLSA
>NC_018485.1|WP_014892274.1|2873029_2874190_+|c-type-cytochrome
MSFAPFAIRRRAATTPSRSPPPATPGVGAALRGGGFARVLQALALLVCVGHAAAEDIKSPLGLPPVAVTVAGTPAMRRLGEKLFFDRGLSANGTLSCAMCHIPAQGFASNQSALSIGMEGRSLRRNAPSLYNVAFKKFLFHDGRETDLAAQVWGPLLAADEMGNPGIGPLVERLRADADYGPLFEAAFPGEGATMMTLGRAIAAYEASLLRGGGRFDRAVYGGERAALTPQEWKGYELFTGKAGCAACHAIGPEAALFTDQSWHNTGVAFRTGQAGGKRLVQLAPGVLQTVDLAAVGLAQTGEPKDVGRFEITNAPADRWAYTTPMLRGVSESAPYMHDGSLRTLAEVIEFYDRGGGANPSLDPKIRPLGLTAQEKAALVAFLEAL
>NC_018485.1|WP_014892273.1|2872349_2873033_+|SCO-family-protein
MSASCNIARGAVAVALALAAPSAFAADPAVTRLPAPGSYALHPIQRAPEALLLDTQGERTPLSAYTRGAVTALGFFYSRCADPLGCPVAWSTFEAARKEAETDPLLKGRLRLVFISLDPTRDTPSVMRMLETEEKGGDVPWVFLTGASEGEMTPLLAAVGQDIAHVRDRAGRRTGAINHMLKVFLIDPEGWVREIYSTAFLTPDGLLNDARTLAMEFPGASNAVAVR
>NC_018485.1|WP_014892272.1|2871069_2872353_+|selenium-binding-protein
MKRLPLRAAVCALVSAWALAPAVADETCNSPFMSGLIKGQEQYLHVWTLGEKGVGDGSDKLVTIDVIPGSATYGKVIHTIAVGGRGEAHHMGFTDDRKYLWAGRLDDSKIFIFDVGSDPSSPKLVKTIDNLAESTGYVGPHTFYALPGRMLVQALSNKKDHGGVTGLITYNNAGELVATTPMPLTDGGDGYGYDIAINPAQNRMLTSSFTGWTNYMMDLSQLIQDDSAMKNFGNTMVMWDLKAMKPLRVFSVPGAPLEIRWALKPGANWAITAGALTSKLYLIKEDDKHAWQAKAVADIGDPAKIPLPVDISISSDASSLWVNTFMDGTARLFDLSDPEAPKQVYAKKIGAQVNMVSQSWDGKRVYFTTSLLANWDKKGADNEQFLKGYSWDGKELREDFVVDFHKEGLGRAHHMKFTARAQKAELP
>NC_018485.1|WP_014892271.1|2870778_2871048_+|DUF4242-domain-containing-protein
MPKFIIERDIPGAGEMTQAELQAISQRSCAVLRALGPQTQWVESYVTDDKVYCVYIAENAAAIKEHAAQGGFPANRISEVRAIIDPATA
>NC_018485.1|WP_014892270.1|2870121_2870715_+|TetR/AcrR-family-transcriptional-regulator
MSRRDVKELREKLLDRGVALLMEQGYHGTGLQELVKSVGVPKGSFYNYFDSKEAFSAEVVKHYIDPFIKRLDAQLQRKDLGAAAALRAYFDGLIEETERLDFRGGCLLGNLIGEIGDTSDLCQTSLREAVHRYRDKLREGIARAQREGGFRADMDAKEMADLLVNFWQGALLRMKIERSVRPLTQFCDMLLNGYFKA
>NC_018485.1|WP_014892280.1|2878815_2879511_+|NAD-dependent-deacylase
MNLFILTGAGVSAESGLGVFRGTGAALWKRYDPMQLATPEAFMRDPALVHEFYNARRRNLIAAASNAAHIALARLEAGLAQRGDSMTLVTQNIDDLHERAGSKRVIHMHGELLKARCASCGAVRDCREELSTDSRCGCDGALRPHVVWFGETPLYMEEIYAALERADRFVAIGTSGAVYPAAGFVREARARGLRCCEVNLEPSENAAQFDERRYGRASEIVPSWVEEILAR
>NC_018485.1|WP_014892281.1|2879626_2880328_+|pyrimidine-5'-nucleotidase
MTKLSPETSRFAEIDTWVFDLDNTLYPQTADLWPKIDARITLFMMRLFGLDAISLRALQKHYYRQYGTTLRGLMTEHGIDAEAYLAFVHDIDRSSLAHNHSLAEAIAALPGRKLILTNGSRHHAVETAKQLGIDHVFEDIFDIIAAEFIAKPDEGAYMRFFEKLKIEPTRAAIFEDIDRNLVVPHARGMTTVLVLPAHDEGPEREAWEIATGDEPHVDFVTDDLVGFLEGLVG
>NC_018485.1|WP_014892282.1|2880397_2881369_+|DUF4238-domain-containing-protein
MSTARRHHYIPRFYLKGFSKPRKRGREHYVHVYERGGRTYQSNITGVAVEYDFNTISVDGHSPDAFEKGMAAFEAEVAPALFRLLETGRFQNDEDRILVMNLIGTMAMRNPRLREVWRDFHERVSYVILDILTANKDRWERHLEKMKRDGYEPGHEVPYDNVRKMVEEKGFKLELQNEAHIKMEVHSLDTLLPLLICRKWMILRAPLASPGFLTSDDPVCLTLDDPEFRGGLYRPGFGLRNTSVTVPLGRHLAIVGKFEGQEECLPINEKGVAHVNSIIIAHSDRRVFAADNHFFYMSGMDEELRPASKLPTDAHFRPRKKNS
>NC_018485.1|WP_014892284.1|2881812_2882670_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MPHTGLETLITAAFEDRANITAETQGDIRRAVDSALRLLDAGKLRVAEKIEGMEGAESWQVNQWLKKAVLLSFRLNDMAVIAGGPGGATWWDKVPSKFVGWGAAEHGAAGFRSVPGAIVRHSAYVAPGAILMPSFVNLGAYVDSGTMVDTWVTVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDDCFIGARSEVVEGVIVGKGSVLSMGVFIGASTKIIDRATGKIHVGYVPPYSVVVSGSLPGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD
>NC_018485.1|WP_014892285.1|2882669_2883149_+|hypothetical-protein
MDAERLRFLYQTEQGRIDRATWRRGAGALVAVLLPLTLIWFALAPYSVHDLATTPFFAPMTILAYAYVIFYAFAVMLIVVSFINLSAKRCRDRGLNPPLGLASLAPLLALLAGAAHFLQPRVAEVMSRWYVWGVDALFVAAALWTIYELGWREDDAAAQ
>NC_018485.1|WP_041927400.1|2883221_2883449_+|DUF1902-domain-containing-protein
MTTPIQIDARWDDDVHVWIATSRDAPGLVVEAASWQSMIDEVRAVLPELLELDAAGLREVSLSFKAETHLALAAG
>NC_018485.1|WP_014892287.1|2883448_2883643_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MAEFYPQIVALLVAAGCNLVRAGKGSHEIWHSPITNRNFTLPRTTKSRHTANEVLKRAGLPKAF
>NC_018485.1|WP_014892288.1|2883644_2884814_+|succinyl-diaminopimelate-desuccinylase
MTESRAVALTRELIRCPSVTPADAGALDVVEKALKSAGFETHRIVFSAPGTPDIDNLFAKIGSGAPHLAFAGHTDVVPPGDPARWRFEPFSAEVSDGRVYGRGASDMKGAIAAFAAAALAYVERRGAPHGTLSLLITGDEEGVSINGTVKLIEWAAARGERFDHCIVGEPSNASTLGDMIKIGRRGSLSGRIRVIGKQGHVAYPQRAENPAPIIARIVAALSGHELDKGTTHFERSNLEFSTIDIGNPAVNVIPGEARAQFNIRFNDVWTHESLKERILQVIKEAAPTANVEVEFPPSNAHSFITKPGHFTELVADAVRQVTGRTPELSTTGGTSDARFIVNYCPVLEFGLTNETIHAVDENARVADIDGLCAVYARIIERYFEPASAR
>NC_018485.1|WP_158491323.1|2884776_2885232_-|hypothetical-protein
MADPNDIYNWLRLDERTTTSGQPTQAQFDEIAALGVREIINLAPATSEKALKNEAEILAALGLRYTHIPVDFQNPTEEDFDRFRAVFEAAGDSATHVHCIANYRVSAFLYLYRISAGMEEARARADLDKIWTPNPVWAAFIERMRARNSAQ
>NC_018485.1|WP_014892290.1|2885268_2886486_-|LL-diaminopimelate-aminotransferase
MSDFYRIKRLPPYVFEQVNRLKARARAGGADIIDLGMGNPDLPAPKHVIDKLVETAGKPRTDRYSASKGIAGLRRAQAGYYARRFGVALDPESQVVATLGSKEGFANMAQAITAPGDVVLVPNPSYPIHAFGFLMAGGVIRSVPSAPTPDYFVALERAIIHSIPKPIAVIVCFPSNPTAEVASLDFYRDLVAFAKKHEIFVLSDLAYAEVYFDDNPPPSVLQVPGAMDVTVEFTSMSKTFSMAGWRIGFAVGNERLLSALARVKSYLDYGAFTPVQVAAAAALNGSDDCVREMRAIYKRRRDVMVESFAQAGWHIPAPRASMFAWAPAPERFRNISTLEFSKLLIEKADVAVAPGEGFGEHGEGFVRLALVENEQRIRQAARNLRRFFESADTQLHNVVPLAARG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

67842 : 76461

uncultured_Mediterranean_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014889548.1\|67842_68649_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-32	35.4
WP_014889549.1\|68673_69429_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.1e-45	45.6
WP_014889550.1\|69593_69830_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_014889551.1\|69988_70420_+	protein translocase TatA	NA	NA	NA	NA
WP_014889552.1\|70416_71211_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.4e-50	44.8
WP_014889553.1\|71432_72821_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.9e-106	46.1
WP_041926723.1\|72758_73268_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_014889554.1\|73489_74263_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_014889555.1\|74259_74943_+	methyltransferase domain-containing protein	A0A1J0MC50	Streptomyces_phage	9.4e-08	31.7
WP_014889556.1\|75069_76461_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	3.3e-15	41.8

DBSCAN-SWA_2

1491341 : 1606174

111

Paracoccus_phage(18.18%)

head,transposase,capsid,protease,tail,integrase

attL 1583617:1583663|attR 1606239:1606285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014890906.1\|1491341_1491815_+\|transposase	transposase	NA	NA	NA	NA
WP_014890908.1\|1493407_1499770_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.0e-35	33.7
WP_014890909.1\|1499829_1500861_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_014890910.1\|1500961_1501867_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA
WP_014890911.1\|1501889_1502810_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014890912.1\|1502800_1504168_+	glycosyltransferase family 1 protein	A0A1L3KK54	Shahe_endorna-like_virus	5.1e-05	41.4
WP_041926848.1\|1504171_1505239_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_148277224.1\|1505271_1506408_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_014890915.1\|1506404_1507073_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.6e-60	56.9
WP_014890916.1\|1507281_1507938_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_014890917.1\|1508239_1509106_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_014890918.1\|1509177_1509870_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014890919.1\|1509885_1510440_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.0e-12	37.5
WP_014890920.1\|1510564_1510996_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_014890921.1\|1511302_1511689_+	CsbD family protein	NA	NA	NA	NA
WP_014890922.1\|1511954_1512275_+	hypothetical protein	NA	NA	NA	NA
WP_148277058.1\|1512293_1512791_+	hypothetical protein	NA	NA	NA	NA
WP_014890924.1\|1512836_1513697_+	Ku protein	NA	NA	NA	NA
WP_014890925.1\|1513703_1516262_+	DNA ligase D	A0A076GD42	Sinorhizobium_phage	4.0e-51	40.3
WP_014890926.1\|1516258_1517062_-	Ku protein	NA	NA	NA	NA
WP_041926850.1\|1517184_1517472_+	hypothetical protein	NA	NA	NA	NA
WP_014890927.1\|1517602_1517764_-	hypothetical protein	NA	NA	NA	NA
WP_014890928.1\|1518059_1518263_-	CsbD family protein	NA	NA	NA	NA
WP_014890929.1\|1518373_1518904_-	YchJ family protein	NA	NA	NA	NA
WP_014890930.1\|1518979_1519198_-	formate dehydrogenase subunit delta	NA	NA	NA	NA
WP_014890931.1\|1519187_1520015_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_041926851.1\|1520011_1522891_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	7.4e-22	23.6
WP_014890933.1\|1522901_1524452_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_014890934.1\|1524451_1524925_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_041927207.1\|1525050_1525950_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014890936.1\|1526192_1527593_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_014890937.1\|1527589_1528234_+	response regulator transcription factor	NA	NA	NA	NA
WP_014890938.1\|1528336_1528897_+	DUF3280 domain-containing protein	NA	NA	NA	NA
WP_014890939.1\|1529065_1530490_+	serine hydrolase	B6DZZ7	Stx2-converting_phage	2.4e-21	33.7
WP_014890940.1\|1530596_1531841_+	GTP-binding protein	NA	NA	NA	NA
WP_014890941.1\|1531950_1533267_-	cation:proton antiporter	NA	NA	NA	NA
WP_014890942.1\|1533485_1534253_+	ComF family protein	NA	NA	NA	NA
WP_014890943.1\|1534273_1534546_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	8.8e-10	43.4
WP_014890944.1\|1534542_1534941_+	DUF1178 family protein	NA	NA	NA	NA
WP_041926852.1\|1534937_1536032_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_158491300.1\|1536758_1536905_-	hypothetical protein	NA	NA	NA	NA
WP_148277059.1\|1537023_1537770_-	hypothetical protein	NA	NA	NA	NA
WP_014890950.1\|1539871_1540405_+	SRPBCC family protein	NA	NA	NA	NA
WP_014890951.1\|1540472_1541075_-	N-anchored protein	NA	NA	NA	NA
WP_014890952.1\|1541065_1541656_-	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_041926853.1\|1541672_1543907_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_014890954.1\|1544050_1544671_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_014889743.1\|1545183_1546227_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014890955.1\|1546596_1546890_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_014890956.1\|1547066_1547606_+	hypothetical protein	NA	NA	NA	NA
WP_051013410.1\|1547619_1548891_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.0e-75	42.4
WP_014890959.1\|1551184_1551592_+	hypothetical protein	NA	NA	NA	NA
WP_014890960.1\|1551661_1551982_+	hypothetical protein	NA	NA	NA	NA
WP_014890962.1\|1552334_1552523_+	hypothetical protein	NA	NA	NA	NA
WP_014890963.1\|1552519_1552696_+	hypothetical protein	NA	NA	NA	NA
WP_014890964.1\|1552695_1553295_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.5e-30	46.4
WP_014890965.1\|1553428_1554655_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	4.5e-77	40.1
WP_014890966.1\|1554724_1555300_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_014890967.1\|1555296_1555623_+\|head	phage head closure protein	A0A0K1LLK9	Bacillus_phage	1.6e-05	32.3
WP_014890968.1\|1555633_1556041_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014890969.1\|1556053_1556461_+\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	4.5e-18	38.7
WP_014889743.1\|1556748_1557792_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014890970.1\|1558025_1558382_+	gene transfer agent family protein	NA	NA	NA	NA
WP_014890971.1\|1558444_1558618_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_014890972.1\|1558614_1559208_+\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	5.8e-06	61.7
WP_014890973.1\|1559223_1559862_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	5.4e-50	49.5
WP_148277225.1\|1559927_1560797_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	6.2e-57	41.9
WP_014890975.1\|1560793_1561225_+	C40 family peptidase	F4YXU4	Roseobacter_phage	3.3e-27	44.6
WP_014890976.1\|1561370_1565252_+\|tail	glycoside hydrolase/phage tail family protein	A0A0B5A7K5	Paracoccus_phage	4.5e-224	39.4
WP_014890977.1\|1565260_1566850_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	3.2e-27	36.6
WP_014890978.1\|1566915_1567527_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	4.9e-32	44.9
WP_014890979.1\|1567566_1567743_+	hypothetical protein	NA	NA	NA	NA
WP_014890980.1\|1567744_1567966_+	hypothetical protein	NA	NA	NA	NA
WP_041926854.1\|1567952_1568147_+	hypothetical protein	NA	NA	NA	NA
WP_014890981.1\|1568223_1568607_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_014890982.1\|1568629_1569313_+	response regulator transcription factor	NA	NA	NA	NA
WP_014890983.1\|1569317_1570694_+	ATP-binding protein	NA	NA	NA	NA
WP_014890984.1\|1570771_1571167_-	DUF3126 family protein	NA	NA	NA	NA
WP_148277061.1\|1571289_1571835_-	hypothetical protein	NA	NA	NA	NA
WP_051013238.1\|1572008_1572638_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_014890987.1\|1572642_1573275_+	HD family hydrolase	G8DCW4	Silicibacter_phage	1.6e-14	35.0
WP_014890988.1\|1573296_1573821_+	protein-tyrosine-phosphatase	NA	NA	NA	NA
WP_051013239.1\|1573780_1574809_+	NAD regulator	NA	NA	NA	NA
WP_051013240.1\|1574917_1575664_+	hypothetical protein	NA	NA	NA	NA
WP_014890991.1\|1575998_1577951_+	MCP methyltransferase/methylesterase	NA	NA	NA	NA
WP_014890992.1\|1577952_1579134_+	PAS domain-containing protein	NA	NA	NA	NA
WP_014890993.1\|1579133_1579523_+	response regulator	NA	NA	NA	NA
WP_041926855.1\|1579746_1581306_+	DUF882 domain-containing protein	NA	NA	NA	NA
WP_014890995.1\|1581719_1582682_-	malate dehydrogenase	NA	NA	NA	NA
WP_014890996.1\|1582924_1583476_+	hypothetical protein	NA	NA	NA	NA
1583617:1583663	attL	NA	NA	NA	NA
WP_173370412.1\|1584143_1584497_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.8e-05	35.7
WP_148277227.1\|1584975_1586451_-	hypothetical protein	NA	NA	NA	NA
WP_014890999.1\|1586755_1587106_+	hypothetical protein	NA	NA	NA	NA
WP_014891001.1\|1587777_1589463_+	hypothetical protein	NA	NA	NA	NA
WP_014891002.1\|1589617_1590232_-	hypothetical protein	NA	NA	NA	NA
WP_148277228.1\|1590228_1590813_-	general secretion pathway protein GspM	NA	NA	NA	NA
WP_014891004.1\|1590833_1591964_-	PilN domain-containing protein	NA	NA	NA	NA
WP_148277229.1\|1592056_1592629_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_014891006.1\|1592832_1594584_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_014891007.1\|1594591_1595806_+	type II secretion system F family protein	NA	NA	NA	NA
WP_041927213.1\|1595823_1596264_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_051013242.1\|1596248_1596659_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_014891010.1\|1596655_1597282_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_014891011.1\|1597285_1597918_-	prepilin peptidase	NA	NA	NA	NA
WP_083858696.1\|1598100_1600539_+	type II secretion system secretin GspD	NA	NA	NA	NA
WP_148277230.1\|1600545_1601412_-	general secretion pathway protein GspK	NA	NA	NA	NA
WP_041927215.1\|1601513_1601984_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_041927216.1\|1602068_1602413_-	hypothetical protein	NA	NA	NA	NA
WP_148277063.1\|1602934_1605094_-	hypothetical protein	NA	NA	NA	NA
WP_014891019.1\|1605300_1605612_-\|transposase	transposase	NA	NA	NA	NA
WP_148277064.1\|1605685_1606174_-\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
1606239:1606285	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1684728 : 1707698

Rhodobacter_phage(22.22%)

tail,capsid,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014891116.1\|1684728_1686498_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.9e-137	45.5
WP_014891117.1\|1686494_1687817_+\|portal	phage portal protein	A0A142K630	Streptomyces_phage	9.2e-60	36.8
WP_014891118.1\|1687826_1688837_+	S49 family peptidase	I3ULZ8	Rhodobacter_phage	1.2e-51	44.6
WP_014891119.1\|1688879_1690214_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_014891120.1\|1690299_1690773_+	hypothetical protein	NA	NA	NA	NA
WP_014891121.1\|1690844_1691552_+	hypothetical protein	NA	NA	NA	NA
WP_014891122.1\|1691558_1692188_+	phage associated protein	NA	NA	NA	NA
WP_014891123.1\|1692191_1692605_+	hypothetical protein	NA	NA	NA	NA
WP_014891124.1\|1692601_1692988_+	hypothetical protein	NA	NA	NA	NA
WP_014891125.1\|1693006_1693399_+	hypothetical protein	NA	NA	NA	NA
WP_041927238.1\|1693382_1693625_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014891126.1\|1693805_1694387_+	hypothetical protein	NA	NA	NA	NA
WP_041926877.1\|1694659_1695175_+	hypothetical protein	NA	NA	NA	NA
WP_014891128.1\|1695479_1696433_+\|terminase	phage terminase-like protein large subunit	A0A0R6PH05	Moraxella_phage	4.6e-37	34.3
WP_014891129.1\|1696438_1697098_+	hypothetical protein	NA	NA	NA	NA
WP_158491304.1\|1697143_1697518_+	hypothetical protein	NA	NA	NA	NA
WP_014891131.1\|1697632_1698559_+	hypothetical protein	A0A125SA50	Pseudomonas_phage	3.9e-33	32.1
WP_014891132.1\|1698558_1698756_+	hypothetical protein	NA	NA	NA	NA
WP_014891133.1\|1698752_1699232_+	hypothetical protein	NA	NA	NA	NA
WP_051013249.1\|1699162_1699486_+	hypothetical protein	NA	NA	NA	NA
WP_014891135.1\|1699489_1702630_+\|tail	phage tail length tape measure family protein	NA	NA	NA	NA
WP_014891136.1\|1702630_1703065_+	hypothetical protein	NA	NA	NA	NA
WP_014891137.1\|1703061_1703562_+	hypothetical protein	A0A1B0T6I5	Pelagibaca_phage	5.2e-08	29.1
WP_014891138.1\|1703570_1703759_+	hypothetical protein	NA	NA	NA	NA
WP_148277071.1\|1703755_1704079_+	hypothetical protein	NA	NA	NA	NA
WP_014891140.1\|1704082_1704490_+	C40 family peptidase	A0A1B0T6D9	Thiobacimonas_phage	3.7e-20	44.2
WP_014891141.1\|1704444_1707297_+	hypothetical protein	M4T544	Rhodobacter_phage	1.6e-93	29.9
WP_014891142.1\|1707293_1707698_+\|tail	phage tail protein	A0A1D8KKB8	Synechococcus_phage	5.9e-10	55.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018485

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection