CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007215	Kosakonia sacchari SP1 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007215_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007215_1

1151370-1151471

Orphan

Consensus_repeat	Method
ACAGCACAGAAGAAAAGTGCGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007215_1

>merge|NZ_CP007215|1|1151370-1151471|CRISPRCasFinder
ACAGCACAGAAGAAAAGTGCGGGTTTAAGCGTCTGAACACTGCGTAGAGGAAAATGCCGTAAATGAATGCCGACTAACAGCACAGAAGAGAAGTGCGGGTTT

>NZ_CP007215|1|1|1151370-1151471|CRISPRCasFinder
ACAGCACAGAAGAAAAGTGCGGGTTT	AAGCGTCTGAACACTGCGTAGAGGAAAATGCCGTAAATGAATGCCGACTA
ACAGCACAGAAGAGAAGTGCGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007215.2\|WP_017459383.1\|1157258_1158041_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP007215.2\|WP_017459370.1\|1148536_1150183_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NZ_CP007215.2\|WP_017459378.1\|1153677_1154088_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|180196
NZ_CP007215.2\|WP_017459368.1\|1146327_1147551_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP007215.2\|WP_017459363.1\|1141092_1142181_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
NZ_CP007215.2\|WP_017459381.1\|1155276_1156476_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP007215.2\|WP_017459377.1\|1152693_1153395_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
NZ_CP007215.2\|WP_017459366.1\|1145144_1145780_-\|DUF1109-domain-containing-protein	unknown	unknown	unknown
NZ_CP007215.2\|WP_017459362.1\|1140416_1140788_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378822
NZ_CP007215.2\|WP_017459375.1\|1151861_1152308_-\|flagellar-export-chaperone-FlgN	unknown	unknown	gnl\|CDD\|225952
NZ_CP007215.2\|WP_017459364.1\|1142268_1144038_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP007215.2\|WP_017459369.1\|1147591_1148143_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_CP007215.2\|WP_017459380.1\|1154508_1155231_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235847
NZ_CP007215.2\|WP_017459367.1\|1145766_1146318_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171551
NZ_CP007215.2\|WP_017459382.1\|1156488_1157235_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP007215.2\|WP_017459379.1\|1154093_1154498_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP007215.2\|WP_017459376.1\|1152325_1152625_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|236765
NZ_CP007215.2\|WP_017459365.1\|1144030_1145104_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP007215.2\|WP_017459361.1\|1139342_1140185_-\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
NZ_CP007215.2\|WP_083200603.1\|1158090_1158804_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700

Protein	Function_ID	Function_description	E-value
NZ_CP007215.2\|WP_017459383.1\|1157258_1158041_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.7168e-166
NZ_CP007215.2\|WP_017459365.1\|1144030_1145104_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.65628e-141
NZ_CP007215.2\|WP_017459378.1\|1153677_1154088_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.21809e-56
NZ_CP007215.2\|WP_017459368.1\|1146327_1147551_-\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	8.15539e-86
NZ_CP007215.2\|WP_017459363.1\|1141092_1142181_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	2.71014e-45
NZ_CP007215.2\|WP_017459381.1\|1155276_1156476_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	3.06848e-152
NZ_CP007215.2\|WP_017459377.1\|1152693_1153395_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	1.12752e-43
NZ_CP007215.2\|WP_017459362.1\|1140416_1140788_+\|hypothetical-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	2.70577e-05
NZ_CP007215.2\|WP_017459375.1\|1151861_1152308_-\|flagellar-export-chaperone-FlgN	gnl\|CDD\|225952	COG3418, COG3418, Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones].	8.82798e-11
NZ_CP007215.2\|WP_017459364.1\|1142268_1144038_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	4.73736e-103
NZ_CP007215.2\|WP_017459369.1\|1147591_1148143_-\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	2.82209e-41
NZ_CP007215.2\|WP_017459367.1\|1145766_1146318_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171551	PRK12512, PRK12512, RNA polymerase sigma factor; Provisional.	6.05235e-38
NZ_CP007215.2\|WP_017459382.1\|1156488_1157235_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	1.88363e-115
NZ_CP007215.2\|WP_017459379.1\|1154093_1154498_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	8.99694e-70
NZ_CP007215.2\|WP_017459376.1\|1152325_1152625_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|236765	PRK10810, PRK10810, anti-sigma-28 factor FlgM.	3.77148e-11
NZ_CP007215.2\|WP_017459380.1\|1154508_1155231_+\|hypothetical-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	1.76424e-42
NZ_CP007215.2\|WP_017459361.1\|1139342_1140185_-\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.3835e-120
NZ_CP007215.2\|WP_017459370.1\|1148536_1150183_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	8.51466e-60
NZ_CP007215.2\|WP_083200603.1\|1158090_1158804_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	7.99289e-103

>NZ_CP007215.2|WP_017459370.1|1148536_1150183_+|SgrR-family-transcriptional-regulator
MLYNSAVKKGSLLRRYNRLLTRYNTHRHEVSLAQIADTLACTSRYARSLLHEMQEEGWLVWNSRPGRGALGVLQCRMNAAALETLVAGEYPVAETEMVTTQAQPHYSSDGFRYLISFYRPLLAPIPSIHTDRAGRHILQMVHAGLTRHIPEQVAPVPGLAHTITSSEDGLRWRFILRRGLVWHNGEPVLPEQLRQTLERYAGGPGLPHVIDVKCDNYVLTMQLGQRDNMLLYRLANPVYALPHPRNGSIGLGPFKVSEHSSSQLVLTRAAFWYGETPQASEIVYSTPLSVAPLPALVRLDTPHSLIAPEAMTERDNADAFYYVTFNQARGRLNAQQQAFIRRVTRCICAGLIEREDTLGPLPEWLQPTAEPEVQALLPDNLNLVYFRSTEMRKLVDELAKSLRYRGCKVTLTPISVTHWLLQDKNWAEQDICMGFLRFEQHDAFSMEERYRHSVMWAWFWGEAVWRRGIGILDRINAGPAERYSRRVKRLMRYLSDRRWIVPLLAQRYRLVTPASVQGVFCYPQSWPDYTRLWTDEVQHAHSAQQRQE
>NZ_CP007215.2|WP_017459369.1|1147591_1148143_-|peroxiredoxin
MIPMKKLALSLTAAALLNIATAHAALPTGSQAPDFKLQGALAGKPLTFSLQQALQKGPVVLYFFPAAFSKGCTIEAHAFAEATDDFKKLGATVVGVTAGNTDQVDEFSKLECRDKFTVTADPGAKVAAQYDTLMKMNGKTLSDRTSYVIAPDGKILLSYTDRNPETHIQKTMEAVKQYANAHS
>NZ_CP007215.2|WP_017459368.1|1146327_1147551_-|thioredoxin-family-protein
MLTAMLAAFAGGIILNFMPCVFPIISLKALGLLRHTQSPAQTRKEGLGFLLGCVLTMLALAGVLLALRAGGTAVGWGFQLQSPLVIAFLALVILGAALNLLGVFEVGLSVQRAGELTIERGAFLRAALTGALSIIVATPCAAPFMASAIGYALVQPPAVALAIFVALALGFTAPFTLISLFPALGKWLPRPGAWMNTLKRGLAFPMFGAFGWLVWVLAQQAGTTALAAILAAAVVVSFAAWLYGMAQQRRFAGRDHKVLFALTAALLLAAIVPLPSIVQNGAPLTASNTVEEVKWSPQTVADNRGHGKAIFVNFTASWCITCQVNEKTSLSTQAVKEALAKTNTLYMVADSTKFNADIDDALNELGQGSLPLYVVYPADGSAPHILPQVLTPSIVVNALTQASGKKT
>NZ_CP007215.2|WP_017459367.1|1145766_1146318_-|sigma-70-family-RNA-polymerase-sigma-factor
MEKNEAARDEWPQLMALAQSGDSQAYTRLLKALVPVIRSLARKQIADEVLVEDVIQDVLLTVHRVRHTYDPGAPFLPWLMAIANARAVDALRKRGRHQQREVVSEADIPLPATSMEVPSHDELAMLLNQLPARQREVVEHVHLREMTLAETATQQNLTVAAVKSLLHRALSNLRRLGAHHGRS
>NZ_CP007215.2|WP_017459366.1|1145144_1145780_-|DUF1109-domain-containing-protein
MADHDLLIEQLGRSIEPVKRPFQPGWRALSWVALALPCGVIAGFILNRTLTDWSQPGAWWALMQLLLTFIAGTLAVRNAFLLSIAGRNALGWKWFTPLAALWLAGTFSNLHLHRVLPVSTAVEGPNCYLFMVTVSVPMALIVIAYLRRTRTLFPARSLAAAGAGVACMALTLLALCHPTHISLADLMLHIAAFSTIVLATIALGYKWVSLP
>NZ_CP007215.2|WP_017459365.1|1144030_1145104_+|ABC-transporter-ATP-binding-protein
MIELAVENLHLTYGDNAVLKGVSMELKRGEVVSLLGPSGSGKTTLLRAVAGLEKPTQGRITIGNNVVYDGTPRSEVPAEERNLGLVFQSYALWPHKTVFENVAYPLKLRKVGAAEINTRVQSVLDQLGLGTLGKRHPHQLSGGQQQRVAIGRALVYNPPVILLDEPLSNLDAKLREEARVFLRELIVKLGLSALMVTHDQNEAMAISDRILLLNNGVIEQQGTPQEMYATPSTLFTAEFMGSNNRLHGKVSEVSNGRARIEGANWALWGVAGPGVRAGQDCTAVIRVESLRLADSPQDNSLDLPMLTSMYLGDRWEYLFRTSGDDFAIRVYGTQQRNQQNYRVVLPAEQLWIFPQKS
>NZ_CP007215.2|WP_017459364.1|1142268_1144038_+|iron-ABC-transporter-permease
MNSVRRKWQGLPRGVIVLITALVIYIPLLFIVVQSFLSAPFFVRSKELSLEAFEFIFTDPDFYLALKSGFILAFGLVFIAIPLGGILAFLMVRTDLPGRRFIEPLILVPIFVSPMVLGFGYVVAAGPVGFFSRWAQELIGFVPWNIYSMFSIVVIAGLTHVPHAYLYISSALRSVGSDVEEAARTVGASPLQVMTAVSLPMVRPSILYACVLLFFLGLEVFGLMLVLGDPEGNMVLATYLYKLTNKLGTPSYHLMAAVAVVLICITIPLVMLQRRLMRTANRFVTMKGKASQARALPLGKWRWVAGAVVVAWLTVTIGVPLIGVVLRAFISNWGVGVSLWDEVSLDTFRNIWQQPNLLRAIVNSMAIGVFGGALAVICYLFVGIAMHRKQDNVTRFLDYSVLVPRAVPGLLAGLAFLWVFLFLPMWLDQSLKNGWLSGLPVAEWLRENLIVWLRSLRNTIFSVWLAYTVVWMAYGLRLISSTLLQVGPELEEAARSTGATSGQVTRHVTVPLSRYGLIGSWLLMFLIFEREYSTGVYLLSPGTETIGSMLVSLWAAGAIDIVAALSFINILLVVIGLGVALRFGVKLHD
>NZ_CP007215.2|WP_017459363.1|1141092_1142181_+|ABC-transporter-substrate-binding-protein
MDKKFTVLAVALTALFSGTSLAAVPQGYPADYQKIVDAGTKEGKVVIYSTTDTKAAGPLIKGFEAQYPGIKVEYNDMNSTELYNRYLSEQASGGGSGDVVWSSSMDTALKLATDYAAEYASPELDKLPKWAVWEKKAYGTTYEPVVFIYNKRLIPAGDVPDSHTALGKLIASQTDKFKSKVTTYDIEKSGLGFMLAVEDSKHDKDYFTHLADVAKGGLTVQSSTGTMMERVSSGENLIGYNILGSYAEARAKGDNSLGISYPKDYVLVLSRVSFISAEAEHSNAAKLWFDYLLSEKGQSILASQADIPSLRNDIEGKNDIDGLTKQLGDALKPIAVDESLLEYLEPKKRLEFIKQWRAAAAK
>NZ_CP007215.2|WP_017459362.1|1140416_1140788_+|hypothetical-protein
MANILHGVALLCIAIVVIFLIYKVTRWIRQLFIEAHVMKHGIGANADIIALKRTNWMDRRSVYCELVLRFRTREGQVVQASVFQFLDSREIVRFAEGNGTTVKYSPQNPKHIVLYDRPLILGD
>NZ_CP007215.2|WP_017459361.1|1139342_1140185_-|phosphonate-ABC-transporter-ATP-binding-protein
MNSALAEISEDHFSSRHQLNTVPKQKVLSVKNLRKAYNTHQTVLHDISFDLHSGEMVGVIGRSGAGKSTLLHVLNGTHSATSGEILSFPEVGTPRDVTHLKGRSLNQWRSQCGMIFQDFCLVPRLDVLTNVLLGRLSQTSTLKSLFKVFTDEDRAKAIALLEWLNMLPHALQRAETLSGGQMQRVAICRALIQNPSLLLADEPVASLDPKNTQRIMGVLREVSEQGISVMVNLHSVELVKEYCTRVIGVSQGRIIFDGHPSRLTQDVLQVLYGDEISQLH
>NZ_CP007215.2|WP_017459375.1|1151861_1152308_-|flagellar-export-chaperone-FlgN
MMENLPVILNKLYTLLGELEATLVEEIGQLSRAQINPVSLQVISDNKSRLLSAINFYDEQRKQEEKQHQLTFPYPHHSELATLWDRITVVVRKSAELNQKSYQLLNMHMKKMNDFKKIVSQTTATAQLYGESGNRSNDASGNVYRISV
>NZ_CP007215.2|WP_017459376.1|1152325_1152625_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MNIERTRQANPIQATGTQQQPVETKIMNDESAQSGKTDAQQAGTQVKLSQLTQQIKNDGSRDVNTERLAAIKAKMDAGELHLDSDKIASALVRDIFRFS
>NZ_CP007215.2|WP_017459377.1|1152693_1153395_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MPQSLIRLLIVIVALCCPFSPAFASAPENSDLEARITTLLAADNKEAENQPQLRIKILTPAAKLAALCAQPDLRLSGRSVRLTGRRSVIAKCGKKQQFIQIQISATGRYWVAAQTLKPGQIISAEDIQPVSGELDRLPAGLLLDPQSIIGSTPTRIIQPGSPLAENQLHRSWAVIANRTVEITAPGDGFLIHAKGKALDNAALDESVRVQTRTGQVVVATVTGQGQVSISLSN
>NZ_CP007215.2|WP_017459378.1|1153677_1154088_+|flagellar-basal-body-rod-protein-FlgB
MFDKLDNELRFQQQALSLMSRRQDILASNIANADTPGYKARDIDFSKELKNAMQQETRHPLTLSLTAGKHIPGVAPKTDNRQLLYRIPDQPRADGNTVDMDRERVNFADNNVKYQTSLTILGAQIKGLTSALNQGQ
>NZ_CP007215.2|WP_017459379.1|1154093_1154498_+|flagellar-basal-body-rod-protein-FlgC
MSLFSVFDISGSAMAAQSKRLNVSASNMANADSIAGPDGKPYRARSVVFNVDNSAGQEIGGVKVSGVTESTAPDRLVYEPANPLADDKGYVHMPNVDVVGEMVNTISASRSYQANVEVMNSAKSLMLKTLTLGQ
>NZ_CP007215.2|WP_017459380.1|1154508_1155231_+|hypothetical-protein
MAISPVMTQSAATTKTTSSSGTSNTNTTSSSSVGTGSSADDLLNNFMTLLVAQMQNQDPTSPMDNNQLTAQLAQFNTAAGVEQLNSTMNSMGTLVASMQQMNSADWVGRDIMVEGEPSVSTATDGNQKVGLSLNSPADEVTVTLTDPAGNAYTAKLKNVEAGVHQYSLDDFEDFQPSDPRLQADTNFKVSFSATNADGSTPTITALKPAKVQSVSFTNSGAVLQLGVNGTASLSDVYLIE
>NZ_CP007215.2|WP_017459381.1|1155276_1156476_+|flagellar-hook-protein-FlgE
MGFSQGLSGLNASSQALDVVGNNIANSQTVGFKSGSVAFADVFAGSQVGMGVQVAGVNQNFSDGVLGAGSSPLDMGIQGNGFFRMVTEAGRVFYSRNGQFQTDENGYVVNNQGMRLTGYMATGTPPAIQQGAPVGPIQIPTGQMPARASDAGSISGNLDSGNEIVTVTPFDPANGDSYTYSTQVNAYDSLGNEHAINVYYVKTADNQWTAYSVDSTSPGTTSSVNLTFDTSGKLTTNPANLPVAGAAYQGGAALNFNLDLSGLSQQASENTMDSPSTTGYPPGLMNGYTVGDNGQIIASYSNGENQLLGQVVLSNFTNPGGLQSAGNNCWTETPESGQPVIGIADTGNLGSLRGNMLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSELLQTLVNLG
>NZ_CP007215.2|WP_017459382.1|1156488_1157235_+|flagellar-basal-body-rod-protein-FlgF
MDHAIYTAMGAANAALNRQAVTSNNLANASTTGFRAQIAAFRAIPVQGPSIETRTMVAESTPFSDNTMGTMQATGRSLDVAMPQNGWLAVQLPDGSEGYTKDGNIEVDAEGQLRVRGMPLLGDGGPVAVPPQAELTIAADGTITALGAGDEPSALAQVARLKMVNATPNTLKHGDDGLFHVADPAAAQVLPADADLRLMPGMLEGSNVSPVKSMVDMIATARGFDMNMKVITTVDDNEQKANQLLSAG
>NZ_CP007215.2|WP_017459383.1|1157258_1158041_+|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLIYQTLRQPGAQSSEQTTIPSGLQLGTGVRPVATERIHSQGSLTQTNNSKDVAIQGSGFFQVQLPDGTTAYTRDGSFQFDQNGQLVTSSGYQVQPAITIPQDAQSLTIGNDGIVSVTVPGQTAPQQVGQLTLSSFINDSGLESIGENLYRETQSSGAPNESTPGLNGAGTLKQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQRLTQL
>NZ_CP007215.2|WP_083200603.1|1158090_1158804_+|flagellar-basal-body-L-ring-protein-FlgH
MTNHPCSVRTLCRLATTFMLISVVTGCAYIPQKPLVGGETSAMPAPVAAATANGSIFQTGQAMNYGYQPMFEDRRPRNVGDTLTIALQENVSASKSSSASASRDGSTDVGVAGVPGFMAGLVGNGKADASISGTNDFAGKGGAAAKNTFSGTITVTVKQVLENGNLAVVGEKQIAINQGTEFIRFSGIVNPRTISASNTVISTQVADARIEYVGNGYINEAQQMGWLQRMFLNLSPF

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Crispr_ID: NZ_CP007215_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007215_2

4569266-4569353

Orphan

Consensus_repeat	Method
TTCTCTCCCCCAAACGGGGAGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007215_2

>merge|NZ_CP007215|2|4569266-4569353|CRISPRCasFinder
TTCTCTCCCCCAAACGGGGAGAGAAATATGGCTGATGGTGAAAACAGGCAGGCCTTGCGGCAGTTCTCTCCCCAAACGGGGAGAGAAA

>NZ_CP007215|2|2|4569266-4569353|CRISPRCasFinder
TTCTCTCCCCCAAACGGGGAGAGAAA	TATGGCTGATGGTGAAAACAGGCAGGCCTTGCGGCA
GTTCTCTCCCCAAACGGGGAGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007215.2\|WP_017459433.1\|4558969_4559467_-\|chorismate-lyase	unknown	unknown	gnl\|CDD\|236949
NZ_CP007215.2\|WP_017459429.1\|4563686_4564877_+\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	unknown	unknown	gnl\|CDD\|236533
NZ_CP007215.2\|WP_007372406.1\|4572893_4573136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007215.2\|WP_017459423.1\|4569357_4571454_-\|YjbH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377600
NZ_CP007215.2\|WP_017459426.1\|4567727_4568138_-\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
NZ_CP007215.2\|WP_025263766.1\|4559647_4560637_-\|maltose-operon-protein-MalM	unknown	unknown	gnl\|CDD\|236716
NZ_CP007215.2\|WP_017459425.1\|4568276_4568786_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007215.2\|WP_017459422.1\|4571456_4572194_-\|capsule-biosynthesis-GfcC-family-protein	unknown	unknown	gnl\|CDD\|368817
NZ_CP007215.2\|WP_017459424.1\|4568795_4569257_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|100048
NZ_CP007215.2\|WP_017459418.1\|4577308_4578094_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NZ_CP007215.2\|WP_170829942.1\|4572193_4572943_-\|YjbF-family-lipoprotein	unknown	unknown	gnl\|CDD\|378557
NZ_CP007215.2\|WP_017459431.1\|4560705_4562031_-\|maltoporin	unknown	unknown	gnl\|CDD\|236481
NZ_CP007215.2\|WP_017459415.1\|4580937_4582524_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226997
NZ_CP007215.2\|WP_017459417.1\|4578108_4579335_-\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP007215.2\|WP_017459420.1\|4573574_4575224_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP007215.2\|WP_017459419.1\|4575903_4577253_+\|lysine-sensitive-aspartokinase-3	unknown	unknown	gnl\|CDD\|236376
NZ_CP007215.2\|WP_017459416.1\|4579324_4580467_-\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259816
NZ_CP007215.2\|WP_017459428.1\|4565066_4566611_+\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_CP007215.2\|WP_017459430.1\|4562206_4563316_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	unknown	unknown	gnl\|CDD\|182893
NZ_CP007215.2\|WP_017459427.1\|4566625_4567516_+\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891

Protein	Function_ID	Function_description	E-value
NZ_CP007215.2\|WP_017459433.1\|4558969_4559467_-\|chorismate-lyase	gnl\|CDD\|236949	PRK11655, ubiC, chorismate pyruvate lyase; Provisional.	4.89393e-100
NZ_CP007215.2\|WP_017459429.1\|4563686_4564877_+\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	gnl\|CDD\|236533	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE.	0
NZ_CP007215.2\|WP_017459419.1\|4575903_4577253_+\|lysine-sensitive-aspartokinase-3	gnl\|CDD\|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	0
NZ_CP007215.2\|WP_017459423.1\|4569357_4571454_-\|YjbH-domain-containing-protein	gnl\|CDD\|377600	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH. YjbH is a family of Gram-negative beta-barrel outer-membrane lipoproteins that act as putative porins. YbjH is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjH and F are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	0
NZ_CP007215.2\|WP_017459426.1\|4567727_4568138_-\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	2.7613e-53
NZ_CP007215.2\|WP_025263766.1\|4559647_4560637_-\|maltose-operon-protein-MalM	gnl\|CDD\|236716	PRK10564, PRK10564, maltose operon protein MalM.	4.71467e-166
NZ_CP007215.2\|WP_017459425.1\|4568276_4568786_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.16351e-14
NZ_CP007215.2\|WP_017459422.1\|4571456_4572194_-\|capsule-biosynthesis-GfcC-family-protein	gnl\|CDD\|368817	pfam06251, Caps_synth_GfcC, Capsule biosynthesis GfcC. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 4 capsule biosynthesis. These proteins have a beta-grasp fold. Two beta-grasp domains, D2 and D3, are arranged in tandem. There is a C-terminal amphipathic helix which packs against D3. A helical hairpin insert in D2 binds to D3 and constrains its position, a conserved arginine residue at the end of this hairpin is essential for structural integrity.	5.61738e-88
NZ_CP007215.2\|WP_017459424.1\|4568795_4569257_+\|N-acetyltransferase	gnl\|CDD\|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	1.22268e-40
NZ_CP007215.2\|WP_017459418.1\|4577308_4578094_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.25716e-112
NZ_CP007215.2\|WP_170829942.1\|4572193_4572943_-\|YjbF-family-lipoprotein	gnl\|CDD\|378557	pfam11102, YjbF, Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	8.58836e-64
NZ_CP007215.2\|WP_017459431.1\|4560705_4562031_-\|maltoporin	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	0
NZ_CP007215.2\|WP_017459417.1\|4578108_4579335_-\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NZ_CP007215.2\|WP_017459420.1\|4573574_4575224_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP007215.2\|WP_017459415.1\|4580937_4582524_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226997	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	0
NZ_CP007215.2\|WP_017459416.1\|4579324_4580467_-\|slipin-family-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	6.53688e-102
NZ_CP007215.2\|WP_017459428.1\|4565066_4566611_+\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NZ_CP007215.2\|WP_017459430.1\|4562206_4563316_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP007215.2\|WP_017459427.1\|4566625_4567516_+\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0

>NZ_CP007215.2|WP_017459424.1|4568795_4569257_+|N-acetyltransferase
MTSASLRQTAVRNVTCGDNVVIYEPANLYDCTLADDVFVGPFVEIQGHTQVGKGSKIQSHSFICEYVTIGERCFIGHGVMFANDMFRDGKPDPDSNNWGRIVIGNDVSIGSGATILAVTITDGCVIGAGSVVTKSISEKGVYAGNPARLLRRL
>NZ_CP007215.2|WP_017459425.1|4568276_4568786_+|GNAT-family-N-acetyltransferase
MLIVRKAEIADAALLSEMGYASYRHHFAPLWREPAELEAFLSQEYSPVVIEQSLQSEAGGWFIAQNTAPVGFAKVSWHSAVDEHGPVGTLLHKLYLLPGETGKGYGERLLAEIERLAQQRGERFIWLEVLDANPNAQRFYLRQGFTHLKDTTFSTASQQSTLHILGKSL
>NZ_CP007215.2|WP_017459426.1|4567727_4568138_-|phosphate-starvation-inducible-protein-PsiE
MTSLTRPRVEFISTILQTVLNLGLLSLGLILIVFLGKETLHLADVLFAPVQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFIYIGITAIVRLIIVDHQSPMDVLIYSAAILLLVITLWLCNSQRLRRE
>NZ_CP007215.2|WP_017459427.1|4566625_4567516_+|maltose-ABC-transporter-permease-MalG
MAMVQAKSQKLRLFITHLLLLVFIAAIMFPLLMVVAISLREGNFATGSLIPENISWEHWRLALGFSVEHADGRVTPPPFPVLLWLWNSVKIAVITAVGIVALSTTSAYAFARMRFRGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYVPFIGLNTHGGVIFAYMGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVNGLTAGGVKG
>NZ_CP007215.2|WP_017459428.1|4565066_4566611_+|maltose-ABC-transporter-permease-MalF
MDVRRKRHWWQSPQLAWAAITVVGLLVAYLVVMMYAQGEYLFAITTLVLSSAGLYIFANRKAYAWRYVYPGVAGMGLFVLFPLICTIAIAFTNYSSTNQLTQERAQQVLLDRSYQAGKAYNFGLYPEGDAWRLALTDGDSGKNYVSDAFKPGGEQQLTLKEADALPAGERANLRIITQNRQALNQLTALLPDGSKVAMSSLRQFSGTRPLYQLEQDGTLANNQSGAKYRPNNEIGYFQVINADGSWGSEKLSPGYTVTIGWDNFTRVFTDEGIQKPFIEIFIWTVVFSVLTVVLTVAVGMVLACVVQWESLKGKAIYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIVIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPLQNFFRITFPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD
>NZ_CP007215.2|WP_017459429.1|4563686_4564877_+|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE
MKIKTGARILALSAVATMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEVTPDKAFQDKLFPFTWDAVRYNGKLIAYPIAVESLSLIYNKDLVPNPPKTWEEIPALDKQLKAKGKSALMFNLQEPYFTWPLIAADGGYAFKFENGKYDVKDVGVDNAGAKAGLGFLVKLIKDKHMNADTDYSIAEAAFNKGETAMTINGPWAWANIDKSKINYGVALLPTFKGKPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDQGLADVNKDKPLGAVALKSYQDQLAKDPRIAATMDNAKTGEIMPNIPQMAAFWYATRTAVINAVSDRQTVDAALKDAQGRITK
>NZ_CP007215.2|WP_017459430.1|4562206_4563316_-|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK
MASVQLRNVTKAWGDVVVSKDISLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLLIGDTRMNEVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEMIKSRVTQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPRVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIEQVQVELPNRQRVWLPVDSANVQVGANMSLGIRPEHLLPSDIADVTLEGEVQVVEQLGHETQIHIQIPAIRQNLVYRQTDVVLVEEGATFAIGLPPERCHLFREDGTACRRLHKEPGV
>NZ_CP007215.2|WP_017459431.1|4560705_4562031_-|maltoporin
MITLRKLPLALAIAAGVLSAQAGAVDFKGYARSGIGWTGSGGEQQCFQATGADAKYRLGNECETYAEIKLGQEVWKEADKSFYFDSNIAYKTAQLNDWENDNVPAVREFNVVGKNLIDSLPGANIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDVGIGKLSLAATRSSELGGSSAFGDRDSTTGLRTYNHAVPNDVFDVRLAQLATNPNGVLELGVDYGHTNIPDDYYLEPGASKDGWMFTAEHTQSMMKGYNKFVVQYATDAMISQGKGQARGGAVDNDGHLIRVLDHGAINLAEKWDLMYVGMYQDTDRDNKRGNTWYTVGVRPMYKWTPIMSTLMEVGYDNVKSQQTGDRNSQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYVKTDADGNTSSLAASNGATTPFGFGTNSRGNDDEWTFGAQMEIWW
>NZ_CP007215.2|WP_025263766.1|4559647_4560637_-|maltose-operon-protein-MalM
MPGQRSPRNQGDHNENEKSLVALCLSAGLLAAAPAVSLAAVNIVPQDISAAPSIPTSTLQQLHWTPVSPSQTLSSDISAAGQTLNTGDITGPVMAYSVPANIGELNITLTSKVNNESVYAPNVLVLDQNFTPAAFFPSSFFAYQEPGVMSDNRLEGTMKLTPALGQQKLYLLVFTTQKDLQKTTQMVDPAKAYAKGNGNAVPDIPDPIARHGVTGSLALKASTSSSSSILVGPLFGSSGPASVTVGNTAAPAYSTQPAPAAAPAAAPAPAPVAKSEPMLNDTESYFNQAIKQAAAKGDIDKALKLLNEAERLGSKSARATFISSVKGKG
>NZ_CP007215.2|WP_017459433.1|4558969_4559467_-|chorismate-lyase
MSHPALTQLRALRYVDAIPALEPQLLEWLLLEDSMTKRFEQQGKTVSVTLIREGFVTVDEIAEERDSLPKEDRYWLREIILCADGEPWLAGRTVVPESTLSGPELALQTLGKTPLGRYLFTSSTLTRDFIEIGRHEQLWGRRSRLRLGGKPLMLTELFLPASPLY
>NZ_CP007215.2|WP_017459423.1|4569357_4571454_-|YjbH-domain-containing-protein
MKKSFVISLLALGISAACHAESYPDPIGPSQSDFGGVGLLQTPTARMAPEGELSFNYRDNNQYRYYSGSVQLFPWLETTLRYTDVRTRKYSTVEAFSGNQSYKDKAFDLKLRLWQEGYWLPEVSVGARDIGGTGLFDGEYLVASKAWGPFDFSLGIGWGYLGTSGNIKNPLCSYDEKYCTRDTRYKAAGSTDTSQMFRGPTALFGGVEYQTPWNPLRLKLEYEGNNYQQDFAGKLPQRSKVNVGAIYRVTDWADINLSYERGNTWMFGFTLRNNFNNLRPSYIDNARPKYQPQPQDAILQHSVVANQLTLLKYNAGLTDPQIQVKGDTLYVTGEQVKYRNTQEGVERANRIVMNDLPDGIRTIRVTENRLNMPVVTTETDVASLKRHLEGEPLGQDTELVQKRETPIVPDKPEQGWYIDKSSFDFHIDPVLNQSFGGPEAFYMYQLGVMATADWWLTDHLLTTGSLFGNLTNNYDKFNYTNPPRDSALPRVRTRVREYVQNDVYINNMQANYFQYLGNNFYGQVYAGYLETMYGGAGAELLWRPVDSHWAFGIDGNYVKQRDWRSAQDMMKFTDYSVKTGHFTAYWTPWFAENVLVKASVGQYLAGDKGVTLDVSKHFDSGIVVGAYATKTNVSAAQYGEGDFTKGVYISVPLDLFSTGPTRSRAGIGWTPLTRDGGQMLGRKFELYNMTNDKTVNFQ
>NZ_CP007215.2|WP_017459422.1|4571456_4572194_-|capsule-biosynthesis-GfcC-family-protein
MKKRALLPLLACLASPVAFAVGTVDVYMEGDSKPKTLTNAEYLVDLVGQPRLANSWWPGAVVSERQATVAEQARHQALLARLSALAADESGNSAAAINALRQQLQAMKVTGRQIVELDPDYLRTHRLANRPLQGQYTLWVGKQPTTITVVGLISSPGKKVFTPERDVVSYLDEMSLLSGAERSYAWVIYPNGKTQKVPVGYWNRRHVEPMPGSVIFVGFAPGLWSNEYDELNADILQSLTHRIPE
>NZ_CP007215.2|WP_170829942.1|4572193_4572943_-|YjbF-family-lipoprotein
MAPTREPRPPRPQVPSNSGYINYNHTSVWLFRPFRRRVVKRPGIILICLLLQACSGPIKGLGNSLWNSVFGTPGVQLTDEEILNMPYASQYMQLNNGPQLFVVLAFAENGQQKWVTQDQSTIVTQNYRIVKTHLPGDNLLDVNNLAADPLAKPNQVVDGASWTRLMGWTEHKQVRYATARSVFHWNGSDTVKLASDVTAVRILEEEVTTDQKRWRNRYWVDDQGVIRQSEQYLGADWFPVKTTLIKAAK
>NZ_CP007215.2|WP_007372406.1|4572893_4573136_-|hypothetical-protein
MKKVLYGIFAISALAATSAFAAPVQIGEAAGSAATSVSAGSSAATSVSTVGSAVGVALAATGGGDGSNTGTTTTTTTSTQ
>NZ_CP007215.2|WP_017459420.1|4573574_4575224_-|glucose-6-phosphate-isomerase
MKNINPTQTSAWQALQKHYADMKDVTIADLFAKEGDRFSKFSATFDDLMLVDFSKNRITQETLDKLLALAKETDLAGAIKSMFSGEKINRTEDRAVLHVALRNRSNTPIVVDGKDVMPEVNAVLEKMKAFSEAIISGSWKGYTGKPITDVVNIGIGGSDLGPFMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKTAGDNKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIILSVGYDNFVELLSGAHAMDKHFSTTELDKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNAVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNALSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLNHVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGAILNIFTFDQWGVELGKQLANRILPELGDDKSISSHDSSTNGLINRYKSWRG
>NZ_CP007215.2|WP_017459419.1|4575903_4577253_+|lysine-sensitive-aspartokinase-3
MTSFVVAKFGGTSVADFDAMNRSADVVLSDTSVRLVVLSASAGVTNLLVALAEGLEASERFVKLDAIRKIQFDILERLANPAVIREEIERLLENITTLAEAASLATSTALTDELVSHGELMSTLLFVEVLRERSVQAQWFDVRKVMRTSDRFGRAEPDVAALAELAGQQLAPRLNEGLVITQGFIGSEAKGRTTTLGRGGSDYTAALLGEALHASRVDIWTDVPGIYTTDPRVVPAAKRIDEIAFEEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSRDPKAGGTLVCNNTSNPPLFRALALRRKQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQALLTELSSLCRVEVEEDLALVAIIGNDLSKACGVGKEVFGVLDPFNIRMICYGASSHNLCFLVPGKEAEQVVQKLHHNLFE
>NZ_CP007215.2|WP_017459418.1|4577308_4578094_-|nucleotidyltransferase-domain-containing-protein
MEPLGVDVAMRGRVRQVLHDVEQTYGVKVLYACESGSRGWGFASPDSDYDVRFLYVHQPDWYLRVEPQRDVIELPIDDELDVCGWEWRKALGLLKSANPALIEWLDSPIVYQQDDATLAALRVQVPHWFSPVRARWHYYSMAKKNFRGYLQGEEVRLKKYFYVLRPLLAVRWIEAGKGMPPMRFATLLAGSCLDAPLRAEIDELLALKQRAGEAQYGAQRPLLHAFIGDELARGEIADALPESRSGKVSDLDALLFQTVMS
>NZ_CP007215.2|WP_017459417.1|4578108_4579335_-|RtcB-family-protein
MQHNDYQLLVQEHSAPVKMWTHGVPVEPEAREQLLNTAKMPFIFKHLVVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAADLPDNLGGLRSAIEQAVPHGCSVNRSKRDKGAWENPPQEVDSHWALLAPRFKRLTDKYPRLLQTNNYQHLGTLGTGNHFIEVCLDEQQRVWVMLHSGSRGVGNAIGNVFITLAQQDMQQHIANLPDRNLAYFQEGSKHYNDYLEAVEWAQDFARQNREVMMSRVLAALSRIVTKPFITRQEAVNCHHNYVQKETHFGEEVVVTRKGAVSAQKGQMGIIPGSMGAKSFIVRGRGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRATAHVECRKDCEVIDEIPMAYKDIDAVMAAQESLVEVVHILRQVVCVKG
>NZ_CP007215.2|WP_017459416.1|4579324_4580467_-|slipin-family-protein
MTNKITIRKGQLGLLAKEGDYIQVLETGEHRLPWFNKPDVLVVNTDGSEVAAGLAEYLRRFQPEWVERYCLVADMSDNEAGALYLNGMLLEILPPSTRRLYWQADDALKLVRMDTRDVRVPMEILNAVAQPKRGVAVKGRDAILAVQVPAWHAGVLKVDGVTQALLPAGLSGYWKVNHLVEAEVVDLRLQVLEVSGQEILTKDKVTLRLNLAANWRYTDVLSAFAQLSKPLDHLYRELQFALREAVGTRTLDELLEDKQVIDELVSVQVANRIAAFGIEVASLGVKDIILPGEMKTILSRLVEAEKSAQANVIRRREETAATRSLLNTAKVMESNPVALRLKELETLERVAERIDKISVFGGLDQVLHGLVNIKGSHDAA
>NZ_CP007215.2|WP_017459415.1|4580937_4582524_+|sigma-54-interacting-transcriptional-regulator
MKRRVVIGVLGTVLDKRGKRQNRFRKWRPTVGLCQQPDLTVDRLELLHQPRDEGLAQQTAEDIALVSPHTEVRKHAVTINDPWDFEEVYAAFLDFATHYPFDTENEEYLVHITTGTHVAQICWFLLTEARYLPASLLQTGPAEKGAADEAIAAGVCSVIDLDLSRYATLTSRFQREQQQSVSFLKSGIDTRNATFNRLIEQIERVALRSTAPILLTGPTGAGKSFLTKRIFQLRQSRHLVQGRLVAVNCATLRGDNAMSTLFGHVKGAFTGAQQARTGLLREADGGVLFLDEIAELGLDEQAMLLKAIEEKTFFPFGSDKEVHSDFQLIAGTHRNMQQWVAEGRFREDLFARINMWTFALPGLAERREDIAPNIEYELQRFSQQQQTQIRFDKGARERYLAFACSPHAAWRGNFRELSTSIARMATLAEQGRINDALVEEEVQRLAHHWRGESALPDLPVDISTLDLFDQRQLETVIAVCRRSQTLSEAGRELFAISRQKKANPNDADRLRKYLSRFGLSWESVRGAT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

940322 : 993746

uncultured_Mediterranean_phage(16.67%)

transposase,tRNA,integrase

attL 969192:969251|attR 1001378:1002263

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017457715.1\|940322_941372_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_017457716.1\|941352_942114_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-55	47.2
WP_017457717.1\|942107_942734_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.8e-35	49.4
WP_017457718.1\|942849_943974_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.1e-05	34.6
WP_002442472.1\|944099_945092_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_017457720.1\|945907_948469_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.0e-30	20.9
WP_017457721.1\|948686_950012_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	7.9e-11	24.2
WP_017457722.1\|950258_951122_+	HAD family hydrolase	NA	NA	NA	NA
WP_017457723.1\|951114_951756_+	hypothetical protein	NA	NA	NA	NA
WP_017457724.1\|953149_953785_+	hypothetical protein	NA	NA	NA	NA
WP_017457725.1\|953799_955764_+	hypothetical protein	NA	NA	NA	NA
WP_170829937.1\|955769_957755_+	hypothetical protein	NA	NA	NA	NA
WP_017457727.1\|957776_959252_-	hypothetical protein	NA	NA	NA	NA
WP_017457728.1\|960200_960536_-	hypothetical protein	NA	NA	NA	NA
WP_017457729.1\|960571_960931_-	hypothetical protein	NA	NA	NA	NA
WP_017457730.1\|960945_961473_-	hypothetical protein	NA	NA	NA	NA
WP_025263855.1\|961665_962046_+	helix-turn-helix domain-containing protein	A0A1W6JNW5	Morganella_phage	7.5e-07	42.3
WP_051487239.1\|962308_962698_+	DUF2787 family protein	NA	NA	NA	NA
WP_051487240.1\|962818_963280_+	hypothetical protein	NA	NA	NA	NA
WP_017457734.1\|963282_963735_+	DNA repair protein RadC	NA	NA	NA	NA
WP_017457735.1\|963781_964714_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	1.7e-12	30.3
WP_017457736.1\|964754_965282_-	hypothetical protein	NA	NA	NA	NA
WP_071957260.1\|965557_965764_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_017457737.1\|965760_966639_+	hypothetical protein	NA	NA	NA	NA
WP_040016504.1\|966781_968488_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.0e-22	34.0
WP_000537152.1\|968906_969191_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081874659.1\|969187_970042_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.7e-80	56.2
969192:969251	attL	NA	NA	NA	NA
WP_017460036.1\|970055_970565_-	hypothetical protein	NA	NA	NA	NA
WP_017460037.1\|970583_971036_-	hypothetical protein	NA	NA	NA	NA
WP_017460038.1\|972086_973559_+	hypothetical protein	NA	NA	NA	NA
WP_017460039.1\|974168_974843_+	TIR domain-containing protein	NA	NA	NA	NA
WP_158512902.1\|974987_976160_+	TIR domain-containing protein	NA	NA	NA	NA
WP_017460041.1\|976156_976945_+	hypothetical protein	NA	NA	NA	NA
WP_017460042.1\|977155_977758_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.1e-07	30.6
WP_017460043.1\|977894_978851_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_025263858.1\|978971_979985_-	hypothetical protein	NA	NA	NA	NA
WP_025263859.1\|979997_981491_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_025263860.1\|981506_982778_-	hypothetical protein	NA	NA	NA	NA
WP_017460047.1\|982872_984309_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_017460048.1\|984328_985567_-	MFS transporter	NA	NA	NA	NA
WP_017460049.1\|985832_986828_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_017460050.1\|987277_988165_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_017460051.1\|988302_989046_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017460052.1\|989059_989461_+	VOC family protein	NA	NA	NA	NA
WP_025263861.1\|989543_990539_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_017460054.1\|990679_991075_+	VOC family protein	NA	NA	NA	NA
WP_017460055.1\|991470_992358_+	hypothetical protein	NA	NA	NA	NA
WP_025263862.1\|992966_993746_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.5e-49	89.3
1001378:1002263	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1172244 : 1247994

Erwinia_phage(24.39%)

transposase,plate,integrase,holin,tRNA,tail

attL 1179606:1179622|attR 1194489:1194505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081874659.1\|1172244_1173099_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.7e-80	56.2
WP_000537152.1\|1173095_1173380_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_017459902.1\|1174651_1176985_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
WP_017459903.1\|1176994_1177315_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_017459904.1\|1177311_1177539_-	hypothetical protein	NA	NA	NA	NA
WP_071957261.1\|1177535_1178084_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	5.9e-29	64.8
WP_017459906.1\|1178080_1178347_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.3e-31	72.7
WP_017459907.1\|1178907_1179705_+	hypothetical protein	NA	NA	NA	NA
1179606:1179622	attL	NA	NA	NA	NA
WP_017459908.1\|1179708_1179912_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.7e-13	65.4
WP_017459909.1\|1180283_1181231_+	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_017459910.1\|1181249_1183907_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_017459911.1\|1183903_1185112_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.6e-106	49.5
WP_017459912.1\|1186067_1186550_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.4e-29	47.4
WP_017459913.1\|1186669_1187146_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_017459914.1\|1187135_1187429_+	RnfH family protein	NA	NA	NA	NA
WP_017459915.1\|1187565_1187907_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_017459916.1\|1188054_1189716_-	DNA repair protein RecN	NA	NA	NA	NA
WP_017459917.1\|1189803_1190682_-	NAD(+) kinase	NA	NA	NA	NA
WP_139164788.1\|1190805_1191402_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_025263874.1\|1191510_1192797_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_017459920.1\|1192814_1193603_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_017459922.1\|1193769_1195131_+	signal recognition particle protein	NA	NA	NA	NA
1194489:1194505	attR	NA	NA	NA	NA
WP_017459923.1\|1195383_1195632_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_017459924.1\|1195650_1196199_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_017459925.1\|1196229_1196997_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004104634.1\|1197041_1197389_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_017459926.1\|1197818_1198013_-	ogr/Delta-like zinc finger family protein	Q37973	Salmonella_virus	3.9e-20	68.9
WP_017459927.1\|1198091_1199228_-	late control protein D	S4TRX8	Salmonella_phage	8.3e-94	46.7
WP_017459928.1\|1199227_1199686_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.1e-50	65.5
WP_017459929.1\|1199700_1201581_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	2.0e-39	46.6
WP_017459930.1\|1201573_1201693_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.3e-13	87.2
WP_017459931.1\|1201725_1202007_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.0e-29	78.4
WP_017459932.1\|1202067_1202586_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	5.0e-86	89.0
WP_017459933.1\|1202598_1203780_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	2.1e-201	88.0
WP_017459934.1\|1203917_1204355_-\|tail	tail assembly chaperone	A0A1B0VCD0	Salmonella_phage	1.0e-15	41.7
WP_017459935.1\|1204357_1206100_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	7.8e-91	62.8
WP_017459936.1\|1206230_1206794_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.9e-60	61.4
WP_025263875.1\|1206793_1207804_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.6e-120	66.1
WP_017459937.1\|1207959_1208568_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.7e-88	77.5
WP_017459938.1\|1208560_1209469_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	4.1e-128	77.5
WP_017459939.1\|1209473_1209821_-	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	3.6e-40	71.3
WP_017459940.1\|1209817_1210453_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.5e-95	82.0
WP_139164789.1\|1210530_1211007_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.7e-48	62.1
WP_074460813.1\|1210960_1211206_-\|holin	holin	S4TNY4	Salmonella_phage	2.3e-25	71.6
WP_017459943.1\|1211105_1211519_-	hypothetical protein	O80310	Escherichia_phage	1.5e-16	38.0
WP_017459944.1\|1211515_1212025_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-66	73.8
WP_017459945.1\|1211999_1212230_-	primosomal protein	A0A218M4L5	Erwinia_phage	4.0e-11	44.6
WP_017459946.1\|1212220_1212424_-\|tail	tail protein X	Q858W3	Yersinia_virus	2.7e-19	75.0
WP_017459947.1\|1212634_1212820_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	7.8e-18	77.0
WP_017459948.1\|1212894_1214949_-	replication endonuclease	A0A218M4H2	Erwinia_phage	9.3e-253	64.7
WP_017459949.1\|1214949_1215171_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	3.3e-23	74.6
WP_017459950.1\|1215170_1215398_-	DUF2732 family protein	NA	NA	NA	NA
WP_017459951.1\|1215465_1215804_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	9.9e-35	65.8
WP_025263876.1\|1216335_1217187_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.0e-88	59.1
WP_071957262.1\|1217253_1217808_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_017459955.1\|1217871_1219233_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_017459956.1\|1219415_1220486_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	6.2e-91	51.7
WP_017459957.1\|1220495_1221617_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_017459958.1\|1221685_1222558_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_017459959.1\|1222554_1223715_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_189660115.1\|1223819_1223870_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_017459960.1\|1223972_1224311_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_017459961.1\|1224577_1225315_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_017459962.1\|1225446_1226427_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_017459963.1\|1226423_1227155_+	polyphenol oxidase	NA	NA	NA	NA
WP_017459964.1\|1227284_1229858_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.2e-124	34.6
WP_017459055.1\|1235812_1237111_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-44	31.3
WP_017459054.1\|1237114_1237435_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_025263877.1\|1237480_1238836_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_017459052.1\|1238955_1241610_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_017459051.1\|1241642_1242341_-	DTW domain-containing protein	NA	NA	NA	NA
WP_017459050.1\|1242410_1242830_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	6.3e-15	38.5
WP_017459049.1\|1243034_1244153_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_017459048.1\|1244360_1245050_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.8e-54	47.9
WP_017459047.1\|1245365_1245749_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	1.4e-32	71.8
WP_017459046.1\|1245792_1247127_-	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.7e-42	30.4
WP_017459045.1\|1247256_1247994_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1646964 : 1700125

Enterobacteria_phage(45.45%)

transposase,coat,integrase,lysis,tRNA

attL 1696911:1696970|attR 1703289:1703367

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017459794.1\|1646964_1647660_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_017459795.1\|1647656_1648055_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_017459796.1\|1648275_1649226_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_017459797.1\|1649659_1650574_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017459798.1\|1650647_1651604_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000698460.1\|1651643_1651727_-	protein YohP	NA	NA	NA	NA
WP_017459800.1\|1651836_1652610_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017459801.1\|1652606_1653191_-	DedA family protein	NA	NA	NA	NA
WP_017459802.1\|1653361_1653949_+	YIP1 family protein	NA	NA	NA	NA
WP_017459803.1\|1654119_1655064_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_017459804.1\|1655064_1655619_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.6e-16	33.8
WP_017459805.1\|1655720_1657457_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_017459806.1\|1657765_1660063_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_017459807.1\|1660112_1660643_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_017459808.1\|1660669_1661386_-	molecular chaperone	NA	NA	NA	NA
WP_046199726.1\|1661410_1661944_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_017459810.1\|1661956_1662994_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_017459811.1\|1662984_1665300_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_017459812.1\|1665702_1665945_+	hypothetical protein	NA	NA	NA	NA
WP_017459813.1\|1665955_1666873_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017459814.1\|1666881_1668036_+	ABC transporter permease	NA	NA	NA	NA
WP_017459815.1\|1668028_1668976_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	4.5e-08	27.8
WP_017459816.1\|1668959_1669697_+	ABC transporter permease	NA	NA	NA	NA
WP_017459817.1\|1669671_1669785_-	protein YohO	NA	NA	NA	NA
WP_017459818.1\|1669845_1670577_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.2e-86	76.4
WP_017459819.1\|1670796_1672485_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.2e-259	84.5
WP_017459820.1\|1672478_1673198_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_017459821.1\|1673251_1673737_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.2e-63	78.1
WP_017459822.1\|1673810_1674266_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	9.2e-28	43.0
WP_025263906.1\|1674352_1676386_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.0e-54	28.0
WP_017459824.1\|1676669_1677779_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_017459825.1\|1677812_1678238_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_017459826.1\|1678250_1678586_-	RcnB family protein	NA	NA	NA	NA
WP_017459827.1\|1678783_1679797_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_017459828.1\|1679905_1681036_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-24	31.9
WP_017459829.1\|1681388_1682624_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_017459830.1\|1682680_1683988_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_017459831.1\|1683998_1684850_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_017459832.1\|1684854_1686054_+	glycosyl hydrolase 53 family protein	NA	NA	NA	NA
WP_017459833.1\|1686084_1688142_+	beta-galactosidase	NA	NA	NA	NA
WP_017459834.1\|1688208_1688526_+	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_017459835.1\|1688749_1690015_-	maltoporin	NA	NA	NA	NA
WP_017459836.1\|1690283_1691357_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.1e-74	44.0
WP_040016612.1\|1692121_1696783_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV38	Escherichia_phage	1.6e-26	40.5
1696911:1696970	attL	NA	NA	NA	NA
WP_017459838.1\|1697075_1698431_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_017459839.1\|1698522_1699251_-	hypothetical protein	NA	NA	NA	NA
WP_081874659.1\|1699270_1700125_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.7e-80	56.2
1703289:1703367	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1762788 : 1770251

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017458476.1\|1762788_1764204_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.9e-19	32.2
WP_017458475.1\|1764381_1765275_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.8e-43	40.3
WP_017458474.1\|1765682_1766771_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.0e-101	54.5
WP_017458473.1\|1766767_1767667_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	4.1e-27	33.3
WP_017458472.1\|1767688_1768567_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.6e-106	64.5
WP_017458471.1\|1768571_1769114_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	58.3
WP_017458470.1\|1769123_1770251_+	dTDP-4-amino-4,6-dideoxygalactose transaminase	A0A2K9L0G1	Tupanvirus	3.1e-24	29.9

DBSCAN-SWA_5

3155365 : 3242733

Salmonella_phage(61.11%)

terminase,plate,head,capsid,integrase,lysis,portal,protease,tRNA,tail

attL 3210367:3210385|attR 3244097:3244115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017456177.1\|3155365_3156658_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.1e-92	43.8
WP_017456176.1\|3156749_3158093_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.0e-78	39.1
WP_017456175.1\|3158102_3158714_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_017456174.1\|3159041_3159719_+	hypothetical protein	NA	NA	NA	NA
WP_025263671.1\|3159788_3163868_-	DNA translocase FtsK 4TM domain-containing protein	S5VNE3	Mycobacterium_phage	3.8e-88	49.6
WP_000228469.1\|3163988_3164483_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_017456171.1\|3165036_3166002_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	2.3e-60	43.7
WP_017456170.1\|3166117_3167884_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.6e-22	25.6
WP_017456169.1\|3167884_3169606_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.5e-17	22.6
WP_017456168.1\|3169712_3170414_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3170702_3170921_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_017456167.1\|3171077_3171521_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_017456166.1\|3171517_3171982_+	RES domain-containing protein	NA	NA	NA	NA
WP_017456165.1\|3172612_3174904_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.2
WP_017456164.1\|3174934_3175255_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	7.7e-13	45.0
WP_017456163.1\|3175583_3175805_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.0e-16	61.2
WP_017456162.1\|3175869_3177816_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.9e-39	40.9
WP_017456161.1\|3177812_3178925_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_017456160.1\|3179085_3180042_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_017456159.1\|3180038_3181697_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_017456158.1\|3182070_3182766_+	aquaporin Z	NA	NA	NA	NA
WP_017456157.1\|3182892_3183792_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_017456156.1\|3183939_3185592_+	hydroxylamine reductase	NA	NA	NA	NA
WP_017456155.1\|3185602_3186571_+	NADH oxidoreductase	NA	NA	NA	NA
WP_017456154.1\|3186622_3187051_-	DoxX family protein	NA	NA	NA	NA
WP_017456153.1\|3187204_3188923_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.9e-31	23.8
WP_017456152.1\|3188961_3189960_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_017456151.1\|3189970_3191407_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017456150.1\|3191501_3192515_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_017456149.1\|3192520_3193093_-	WG repeat-containing protein	NA	NA	NA	NA
WP_017456148.1\|3193121_3193952_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	1.9e-07	31.6
WP_017456146.1\|3194373_3194889_+	lipoprotein	NA	NA	NA	NA
WP_017456145.1\|3195098_3195827_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	2.1e-29	36.2
WP_017456144.1\|3195846_3196578_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017456143.1\|3196584_3197301_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_017456142.1\|3197300_3197969_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_017456141.1\|3198139_3198871_+	ABC transporter substrate-binding protein ArtJ	NA	NA	NA	NA
WP_017456140.1\|3198913_3200041_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.6e-28	27.7
WP_017456139.1\|3200082_3200553_-	YbjO family protein	NA	NA	NA	NA
WP_017456138.1\|3200626_3201472_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_017456137.1\|3201468_3202422_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_017456136.1\|3202431_3203565_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.6e-28	34.4
WP_017456135.1\|3203706_3204819_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_017456134.1\|3205168_3205648_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_017456133.1\|3205733_3206636_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.6e-34	33.2
WP_017456132.1\|3206708_3207431_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_017456131.1\|3207605_3207869_+	glutaredoxin, GrxA family	A0A2I7SAE2	Vibrio_phage	2.0e-27	73.1
WP_017456130.1\|3207899_3208265_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_017456129.1\|3208546_3210232_+	aspartate:alanine antiporter	NA	NA	NA	NA
3210367:3210385	attL	NA	NA	NA	NA
WP_017456128.1\|3210462_3210687_-	hypothetical protein	NA	NA	NA	NA
WP_017456127.1\|3210873_3211092_-	hypothetical protein	NA	NA	NA	NA
WP_139164738.1\|3211063_3211699_-	hypothetical protein	NA	NA	NA	NA
WP_017456125.1\|3211878_3212094_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	2.5e-23	70.8
WP_025263674.1\|3212161_3213256_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.3e-170	87.9
WP_017456123.1\|3213243_3213729_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-68	83.1
WP_017456122.1\|3213725_3216527_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	7.2e-248	59.1
WP_017456121.1\|3216519_3216639_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.3e-13	87.2
WP_017456120.1\|3216653_3216956_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.0e-38	88.9
WP_017456119.1\|3217010_3217526_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	6.9e-80	86.5
WP_017456118.1\|3217535_3218708_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.6e-210	93.1
WP_017456117.1\|3218841_3219027_-	hypothetical protein	NA	NA	NA	NA
WP_017456116.1\|3219013_3220177_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	3.2e-125	83.9
WP_017456115.1\|3220173_3220779_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	7.8e-107	90.5
WP_017456114.1\|3220771_3221680_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.1e-141	89.4
WP_017456113.1\|3221666_3222026_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	4.2e-52	89.7
WP_017456112.1\|3222022_3222601_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	8.0e-101	91.7
WP_017456111.1\|3222700_3223396_+	hypothetical protein	NA	NA	NA	NA
WP_017456110.1\|3223397_3223847_-	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	1.9e-57	81.4
WP_025263675.1\|3223839_3224271_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-68	88.8
WP_025263676.1\|3224366_3224792_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-59	89.3
WP_017456107.1\|3224788_3225304_-	lysozyme	E5G6N1	Salmonella_phage	5.8e-87	91.1
WP_025263677.1\|3225284_3225500_-	hypothetical protein	E5G6N0	Salmonella_phage	1.1e-26	83.1
WP_017456105.1\|3225503_3225707_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.6e-32	95.5
WP_017456104.1\|3225706_3226171_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	5.3e-79	92.9
WP_017456103.1\|3226264_3226912_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	6.4e-107	93.0
WP_017456102.1\|3226915_3227995_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	6.3e-184	95.1
WP_017456101.1\|3228011_3228842_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.6e-118	87.7
WP_017456100.1\|3228981_3230748_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.2
WP_017456099.1\|3230747_3231782_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.3e-183	92.1
WP_017456098.1\|3231853_3232810_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	1.0e-116	63.9
WP_017456097.1\|3232860_3233724_-	hypothetical protein	NA	NA	NA	NA
WP_017456095.1\|3234133_3234322_-	hypothetical protein	E5G6M0	Salmonella_phage	9.1e-22	84.7
WP_017456094.1\|3234483_3236853_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	84.9
WP_017456093.1\|3236899_3237127_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	9.9e-31	81.3
WP_017456092.1\|3237126_3237363_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.7e-14	59.5
WP_017456091.1\|3237429_3237771_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	3.9e-47	80.5
WP_017456090.1\|3237978_3238437_+	hypothetical protein	NA	NA	NA	NA
WP_017456089.1\|3238433_3238619_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-11	80.6
WP_017456088.1\|3238626_3239136_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.0e-75	84.6
WP_004223867.1\|3239168_3239390_-	hypothetical protein	NA	NA	NA	NA
WP_017456087.1\|3239515_3240085_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-41	46.7
WP_083200633.1\|3240102_3240288_+	hypothetical protein	A0A0R6PI25	Moraxella_phage	1.0e-09	55.6
WP_017456086.1\|3240299_3241631_+	NTPase	R9TRQ8	Vibrio_phage	1.0e-13	22.1
WP_017456085.1\|3241713_3242733_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.8e-103	56.4
3244097:3244115	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection