CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004388	Thalassospira xiamenensis M-5 = DSM 17429 strain M-5 chromosome, complete genome	3 crisprs	DinG,WYL,csa3,RT,DEDDh	0	3	5	0
NZ_CP004389	Thalassospira xiamenensis M-5 = DSM 17429 strain M-5 plasmid unnamed, complete sequence	0 crisprs	DEDDh	0	0	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004388_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004388_1

639091-639330

Orphan

Consensus_repeat	Method
CTATGGCGGCAGCGGCGATGACAT	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP004388_1

>merge|NZ_CP004388|1|639091-639330|CRISPRCasFinder
CTATGGCGGCAGCGGCGATGACATTATTGATGCAGGCGAGGGTAATGATATCGTCTATGGCGGCAGCGGCCATGACATCATTGATGCCGGTCAGGGTAATGATACCGTCCATGGCGGCAGCGGACGTGACACGATCAGCGGCGGCGAGGGTGAGGATTATATCAATGCCGGTGGCTCGGATGACATTGTAACTGGCGGTGCCGGAGACGACACGATCTACGGTGGCAACGGTCGTGACAC

>NZ_CP004388|1|1|639091-639330|CRISPRCasFinder
CTATGGCGGCAGCGGCGATGACAT	TATTGATGCAGGCGAGGGTAATGATATCGT
CTATGGCGGCAGCGGCCATGACAT	CATTGATGCCGGTCAGGGTAATGATACCGT
CCATGGCGGCAGCGGACGTGACAC	GATCAGCGGCGGCGAGGGTGAGGATTATAT
CAATGCCGGTGGCTCGGATGACAT	TGTAACTGGCGGTGCCGGAGACGACACGAT
CTACGGTGGCAACGGTCGTGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004388.1\|WP_007088896.1\|627161_627566_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP004388.1\|WP_007088897.1\|624218_627086_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|350671
NZ_CP004388.1\|WP_007091263.1\|645637_646096_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NZ_CP004388.1\|WP_007088901.1\|620335_622219_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP004388.1\|WP_007091256.1\|652472_653408_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP004388.1\|WP_007088902.1\|619434_620214_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187600
NZ_CP004388.1\|WP_007091260.1\|648226_648889_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP004388.1\|WP_007088899.1\|622881_623472_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP004388.1\|WP_007091259.1\|648926_649856_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP004388.1\|WP_040060455.1\|651228_652476_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP004388.1\|WP_007091255.1\|653455_654814_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NZ_CP004388.1\|WP_007088898.1\|623596_624088_+\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|133385
NZ_CP004388.1\|WP_007088893.1\|631587_632940_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP004388.1\|WP_007091261.1\|646455_648171_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP004388.1\|WP_007091264.1\|645498_645633_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP004388.1\|WP_007091258.1\|650009_651035_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP004388.1\|WP_007088894.1\|629452_631591_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274550
NZ_CP004388.1\|WP_007088900.1\|622495_622822_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NZ_CP004388.1\|WP_076519508.1\|646116_646395_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP004388.1\|WP_139328126.1\|627758_629456_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|350010

Protein	Function_ID	Function_description	E-value
NZ_CP004388.1\|WP_007088896.1\|627161_627566_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.34816e-31
NZ_CP004388.1\|WP_007088897.1\|624218_627086_+\|ATP-dependent-helicase	gnl\|CDD\|350671	cd17913, DEXQc_Suv3, DEXQ-box helicase domain of Suv3. Suppressor of var1 3-like protein (Suv3) is a DNA/RNA unwinding enzyme belonging to the class of DexH-box helicases. It localizes predominantly in the mitochondria, where it forms an RNA-degrading complex called mitochondrial degradosome (mtEXO) with exonuclease PNP (polynucleotide phosphorylase), that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. Suv3 plays a role in the RNA surveillance system in mitochondria; it regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates. It also confers salinity and drought stress tolerance by maintaining both photosynthesis and antioxidant machinery, probably via an increase in plant hormone levels such as gibberellic acid (GA3), the cytokinin zeatin (Z), and indole-3-acetic acid (IAA). Suv3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.70271e-33
NZ_CP004388.1\|WP_007091263.1\|645637_646096_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	9.90152e-25
NZ_CP004388.1\|WP_007088901.1\|620335_622219_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP004388.1\|WP_007091256.1\|652472_653408_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.60115e-171
NZ_CP004388.1\|WP_007088902.1\|619434_620214_-\|SDR-family-oxidoreductase	gnl\|CDD\|187600	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.00979e-76
NZ_CP004388.1\|WP_007091260.1\|648226_648889_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	6.79233e-101
NZ_CP004388.1\|WP_007088899.1\|622881_623472_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.40535e-39
NZ_CP004388.1\|WP_007091259.1\|648926_649856_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.8758e-165
NZ_CP004388.1\|WP_040060455.1\|651228_652476_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	8.02916e-166
NZ_CP004388.1\|WP_007091255.1\|653455_654814_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	9.29305e-51
NZ_CP004388.1\|WP_007088898.1\|623596_624088_+\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|133385	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.	5.14079e-84
NZ_CP004388.1\|WP_007088893.1\|631587_632940_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.75995e-113
NZ_CP004388.1\|WP_007091261.1\|646455_648171_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP004388.1\|WP_007091264.1\|645498_645633_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	7.71288e-09
NZ_CP004388.1\|WP_007091258.1\|650009_651035_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.20101e-52
NZ_CP004388.1\|WP_007088894.1\|629452_631591_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.2293e-163
NZ_CP004388.1\|WP_007088900.1\|622495_622822_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	9.61096e-17
NZ_CP004388.1\|WP_076519508.1\|646116_646395_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	6.60161e-38
NZ_CP004388.1\|WP_139328126.1\|627758_629456_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|350010	cd18566, ABC_6TM_PrtD_LapB_HlyB_like, Six-transmembrane helical domain (6-TMD) of the ABC subunit in the type 1 secretion systems (PrtD, LapB, HylB), and similar proteins. This group represents the six-transmembrane helical domain (6-TMD) of the ABC subunit in the type 1 secretion systems (T1SS), including PrtD, LapB, and HylB. T1SS are found in pathogenic Gram-negative bacteria (such as Escherichia coli, Vibrio cholerae or Bordetella pertussis) to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type 1 secretion apparatus. In the case of the Escherichia coli HlyA T1SS, these three proteins are HlyB (a dimeric ABC transporter), HlyD (MFP, oligomeric membrane fusion protein) and TolC (OMP, a trimeric oligomeric outer membrane protein). These three components assemble into a complex spanning both membranes and provide a channel for the translocation of unfolded polypeptides. In addition, PrtD is the integral membrane ATP-binding cassette component of the Erwinia chrysanthemi metalloprotease secretion system (PrtDEF). LabB is an inner-membrane transporter component of the LapBCE system that is required for the secretion of the LapA adhesion.	3.42126e-132

>NZ_CP004388.1|WP_007088893.1|631587_632940_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSEAVQNTAIERFRQSRRMARYLSHAVLLEEGGISVFVRSAMVMLSVGFIALIAWAATTQIKETATTFGQVMPTGAVNKIQHLEGGIISEIMVRDGDLVEKDQVLMRLKPEASQAELSQAETRLASLRLEAERYRALAESRDPDFTLLMDQYPELAKNQQEIYRIKTDLDSSQREILDVQIKERNAELAQLQQQEGTLRRSVELLNQEVTMRRSLYEQGLNSKVLFLNIQRELNEAQGNLSSVIAEMARARETIAEANLRQNELRNSQREEALSELGRLGGEIAQADEALRKLKDRVARLEIRAPSKGYIKGLQFTTIGGVIAPAQVVMELVPTDDALVAETRISTEDIGHVHLGQPVTVKVSAFDYIRYGSISGELVSISASTFVDEDGRPYYKGRVALDSDRVGEGARAQPIIPGMTVQADIQTGERTLLQYLLKPVYVSLDQAFSER
>NZ_CP004388.1|WP_007088894.1|629452_631591_+|ATP-binding-cassette-domain-containing-protein
MNIENMDFALNYRMGLASNDAQSDFDACLWPLLQALGWRGLPRQVAEALPHMDEALDLTDFRNVLANLNYRSREIDTTFDRIDDRLMPCLFVPDNGTALVVIKPENAGIRVFDGGTSREMVIKPGNLPGRLFQFTQAGRHERFFEEDKRGWFGGITDRFSALGGQLLLITLMLNLMALASPIFVMGIYDRVIGTRSIPMLIQFGIGMGIVLILDWVLRNLRSQMVSHFGARLDTLVSSAIFERLLSLPPAFTERAPVGVQISRIRDFESVREFFSGPMALVILEMPFLPIFLIVLAILGGWLALIPIGLIVVFVLIGLVSFPVVSRRVSELGRNGANRQEFLVETVGKMQALKYTGTEHRWLSRFRDISADTAYAGFRVAMINNLINTSAQILMVSSGALILAFGAVQVMAGSMTVGALVASMMLAWRVLGPINQAFVGMPRLAQLRGSVRQINRLMTLAPERDLVPRTVGQRRFEGNVTFSRVSFRYTPDSDPALVGVNFDIKAGQVVALVGSNGAGKSSLIKLIAGMYQPQAGAVLIDGADIRQMDPQTLRQSISYVPQDVEFFRGSIAQNLRLANPIASPDELRMACMSAGILSEIEALPDGFETRIGDQHSSRFSTSFLQRLALARAFVREAPIILFDEPTNGLDQKADRAFQHAINRLRGGSTIFLITHRPSHLDLADRIIVLEAGQVRADAPPARIKQQVLDGGFL
>NZ_CP004388.1|WP_139328126.1|627758_629456_+|ATP-binding-cassette-domain-containing-protein
MHIGTLSHLGAGRFAILLAALVINLLSLALPVTLLQVYDRVLPHNAIPTLTLLIIGVFGALVLEAALRLGRAYISSLSAAKFEHKSSQAAVGHLLATSLSDYEKTAPGQHLQRLNSLNVLRDFYAGQAIGAVIDLPFIILFLGLIAIIGGKLVLVPLGILFAFMLTAMILGRRLRRALDERSQADERRYNFIIETLTGIHTIKAMAMENLMIRRHDQLQIQCSEDDLVAARCAHAAINSSASFSMITMILVAGVGSLLVINADLTVGGLAACTMLAGRSIQPLQRAMGLWTQFQSIRVARDRCRELFRLPPEDADDAAEMPPLEGRIELEDVSFSHAGGDTVFENLTLAIQPGESVAITGENGTGKTTLLWLLMGALRPDRGSVRLDGRDPNKYASESIRRQIAYLPQHGVMFKGTILENITSFRKEIGTDRVVEISRRLGLDEIVMRMPDGYDTEVGGQASETLPRGVKQRIAIARALIDYPRIVLFDEANSSLDIAGDNILAGLLIELRKHCTLVMVSHRPSLIALADRQYRLIEKRLVPVLRRSGTQPVIEAEEVASAGGRS
>NZ_CP004388.1|WP_007088896.1|627161_627566_+|RNA-binding-S4-domain-containing-protein
MTLDQTGNKVRIDKWLWYARFYKTRSLASKACQSGHIVLNGQSVSKASVTVVVGDRLQFFQGPHLRVIEVVAPGERRGPAPEAQQLYIDHSPPRVAKKEVAADIRTAPIAEREAGSGRPTKAERRATDRLRGDE
>NZ_CP004388.1|WP_007088897.1|624218_627086_+|ATP-dependent-helicase
MQISTRTGPRILAILGPTNTGKTHLAMERMLAHTSGMIGFPLRLLARENYDRAVARVGKGAVALITGEERILPKSARYFLCTVEAMPVNKQVDFLAIDEIQMCADPERGHVFTDRLLHARGISETMFMGAETIRPVIRQLIDNVEFDTRARFSTLTYNGSKKIQRLPSQSAVVTFSAQEVYAVAELVRRQKGGAAVVLGALSPRTRNAQVEMFQNGEVEHLIATDAIGMGLNLELNHVAFAALHKFDGQFNRGLSAAETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEAHEFEPLAKVFWRNARLDFRTVDALQKSLRKRSDNPTLVLAREPVDEVMLAHLSQNEDVARIASAPDRVQLLWEVCQIPDFRNIHTDAHPRLLTSIYRYLAKPNSKLPVDWLGEQVLRLDRYDGDIDQLSSRLAGIRVWTYVSHKHHWLEDANHWQERTRAIEDKLSDVLHERLTQRFVDRRTSVLLKSLKDKSELMSTITANGEVQVEGEYVGRLEGFRFIADETDAAFEGKAIASAARRALTGEIAQRVKQLETDEDDKFAVNGQLEVLWNGAVVGGLKKGDTVLSPDVQVIDSEFFDGPTRERVRTRLQNFVNAHIEARLKMLTRLRDCQLPGPIRGLLFQLNEGLGCVPRADLESLIKDLSDEDRKALAKLGVRLGVETVHVLDALKPDPVELRGILWAISRELDALPELPPAGRTSVPNDRSNSKGFYLAAGYMPVGPLAARVDMLERFAALLRQKARENDGKVKPDPDLLSLLGCTVEQAEGVFTALGWRAEVVKVSKAELDAKEAAKKASEPASEPAAVSADAPEAPAEAASADEAAKEAPADAVSETPAEEVTPVAGEAEAEPEFVEVKYFVRVDRRKRGGAGKGQRGGPRQEAHGKGAPKGKGGQRPNRGGPNKGGDRGGKGQGRPNNAPAKNNQINEDSPFAKLKEMLAAKG
>NZ_CP004388.1|WP_007088898.1|623596_624088_+|redox-sensitive-transcriptional-activator-SoxR
MVKPGPLHRYLSVGEVAKRSGLAVSAIHFYERKGLIASIRTDGNQRRFPRGILRRVAIIKVAQRTGIPLAEIGNALSGLPINRAPTTQDWEKLSSRWRDDLDARIEQLTLLRDQLGKCIGCGCLSISDCPLRNPSDELATDGPGARLLELDDAQDHEPSDGTS
>NZ_CP004388.1|WP_007088899.1|622881_623472_-|NAD(P)H-dependent-oxidoreductase
MKETFNLALIYGSAREDRFCDTVADWAIKILKTDPDLSVDIIDPAKLDLPSRHVGNAHPGVAELQSALAEADAFLVVTPEYNHSFTGELKLLIDAAKPEWRRKPLAFVSYGGMSGGLRAVEQLRLVFAELHVVTMRDVVSFANVWDQFDPNGYPIDKAGSEAALKHMVNDLKWWSRTLRDGRYPQARAEMPEVTIS
>NZ_CP004388.1|WP_007088900.1|622495_622822_+|ribosome-associated-translation-inhibitor-RaiA
MKVPVQITYRDVDQSDALDERIRFKVQKLEETFDRMTSCHVIVERPHASHAQGNRYAVHFGIHVPGKEIMVKRDSADHAHEDVYIALKNSYQAARRQLKEYVDRMRAH
>NZ_CP004388.1|WP_007088901.1|620335_622219_-|molecular-chaperone-HtpG
MTEEKMRFEAEVSRLLDIVVHSLYSNKDIFLRELISNASDACDKLRYEAIAKPELLAGDSEFKVRLLTDNVRNVLTIADNGIGMNKTDLIENLGTIANSGTAKFVEALSKSDKAKDVDLIGQFGVGFYSAFMVAGQVDVVTKKAGEDQAWKWSSDGKGEYTIAEAEMEGHGTQITLHLTDDFKEFTEEYRLRHIVKTYSDHIGIPVVLMKADGNDETLNEASALWTRPKSDITDEQYKEFYKHNSHAFDDPWKTIHYQAEGAIEYTGLLFLPTMRPFDLYDPARKGHLKLYVRKVFITEGADDLLPPWLRFVSGVVDSQDLPLNISREMLQHNPVLTKIKNGLTKKLLSELETASNKDSKGFETFWENFGSVVKEGLYEDYTNRDRILKLARFRSTHSDGWTTLADYVTRMKDGQKAIYYISGEDVDALKRSPQLEGFAAKGIEVLLLTDPVDEFWLPSVGQFEEKDFKSVTRGGADLADVKSDDKDDAKDDKKDDAASDASLDALIASIKIALGTSIKDVRESDRLTSSACCLIADETGMDLRMERLMKQHNRVDEISPRILEINPKHSLIKKLSDIAIKDAKTPILHDAALLLLDQARILEGEALPDPVSFARRLDLVMEKGLGS
>NZ_CP004388.1|WP_007088902.1|619434_620214_-|SDR-family-oxidoreductase
MKRLENRICIITGAARGIGAAISTAFIKEGADVIATDRDEGALLAFAKEAGCKTMRLDVGNEDDWQKLADAYPAIDVMVNNAGITGFEDGIVAHDPENASLADWRAVHQVNLDGTFMGCRYAIRAMRQRQSGSIINISSRSGMVGIPAAAAYASSKAAIRNHSKTVALYCAQQGYNIRCNSIHPAAILTPMWEPMLGNGPDRDARMAALVADTPAKRFGTPDEVAALAVLLASDEAAYMTGTELTIDGGLLAGSAATPG
>NZ_CP004388.1|WP_007091264.1|645498_645633_+|50S-ribosomal-protein-L34
MKRTYQPSKLVRKRRHGFRSRSATVGGRRVLTARRAKGRKRLSA
>NZ_CP004388.1|WP_007091263.1|645637_646096_+|ribonuclease-P-protein-component
MTVSVERLKKRAEFLRVAGTRRKWVTQGLILQGAPRPGIKPDTEYAGEDRLARVGFTVTKKVGKAVVRNRVRRRLRAVADQLMADMALPGWDYVVIGRQQTIDRDFEKLVDDMRFALRRIPDAKPSAPDSQRPRKGRGSRPGGATKAGDSAK
>NZ_CP004388.1|WP_076519508.1|646116_646395_+|membrane-protein-insertion-efficiency-factor-YidD
MGPLARLLQIAVRGYQLFLSPYIGWSCRYQPTCSAYMLEALARHGAIKGGWMGFKRIMRCHPWGGHGYDPVPGCGCEQNKAPSEDELRLTAL
>NZ_CP004388.1|WP_007091261.1|646455_648171_+|membrane-protein-insertase-YidC
MNEQRNLWIAIAASVAILVGFQFFFAPEPAPQDREAQVREQLDVNGNTAPQSASNVPSVPGGAAPAAPVVNRDAALAKAPRIKIETPRVEGSIRLVGGVIDDIQLQDYRETEEPDSPLIHVLNPTGSDNAYFAEFGWVAADRSVSVPNSDTQWTASSNELTPSKPVTLSWNNGSGLTFNREISIDDNYMFSIKQSVKNDSGSDVTLYPYGLISRKGKPTTAGFYILHEGPLGVIDGTLTEIDYDDLAEDGAVEKKTTGGWLGITDKYWLVALAPSSDEALTTRFSHHVAENSDKYQTDYLGAARTVAAGSEAASETRLFAGAKEVSLLDQYANDYGITNFDLAIDFGWFYFLTKPFFLFLQWLNHLVGNFGVSILIFTVLVKAVMYPLANKSYKSMSAMKKLQPQITKMREQFKDDRQRQQQEMMALYKREKINPASGCLPIVVQIPVFFALYKVLFVNIEMRHAPFFGWIQDLSAPDPTSLFNLFGLIPWDPPQMLMIGVWPLIMGVTMFLQQKLNPAPADPTQAKIMMFLPLIFTFMLASFPAGLVIYWAWNNLLSIAQQRYIMYKMGI
>NZ_CP004388.1|WP_007091260.1|648226_648889_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MTEEKLPSATAIPTFESAQIEAGRKLFSRPVTFMLGVAQLEQLPPEDKIEICLAGRSNVGKSSLFNAITGRKDMARTSNTPGRTQQLNYFDLDGALNIVDLPGYGFAKAPKDIVDTWQNVIKQYLRGRVTLRRVFVLIDSRHGFMKADLEMMKMLDEAAVSYQIVLTKADKLKKGQMEKRIREVVEAVKKHPAALSQLFATSSEKGTGLEALRAEIATLL
>NZ_CP004388.1|WP_007091259.1|648926_649856_+|acetylglutamate-kinase
MNEEVRSEEESSESNAYRTLARAKVLSEALPYMRRYNGQTIVVKYGGHAMGDPELARLFAQDMVLLKQVGMNPIVVHGGGPQIGQMLKELNIQSEFVDGLRVTDQQTIDVVEMVLAGKINKEIVSNINRAGGVSVGLCGKDAHLIKARKLQRTKRDPESNIEKVLDLGFVGEPVEVNPHVLDCFINTDIIPVIAPIGVGEDGQTYNINADTAAGAIAQAVGARRLYMLTDVKGILDADKQLVRDADIDSINAMIADGTIQGGMIPKTETCMDAVRNGVEAAVIVDGRAPHAVLLELFTERGAGTMIRSS
>NZ_CP004388.1|WP_007091258.1|650009_651035_+|GGDEF-domain-containing-protein
MTATDHQVSKHWDYAKATLDALRDHGLRPTPELYHVWFVYYAEENPEILRVIDAVKATGETIGEETLLQLYYRYIFDRQAADFLQRGMEDFSDVVENSDACLSSTRDELRVYSDVLGKAETSLKTGEKADEVIHNVVLHTGRMQTTVESLHEQLGDYLKTITHLQRELHETRERSYTDGLTRVSNRMHFEEVLASCCVEFDSGNIDEPFCVMMVDLDQFKAVNDKYGHRIGDEILVLIASMIKANTKGRDLVARYGGDEFAILLPQTPLKDAMMLAEDMSKRIAAREVRAKSSGTSFGHMTVSVGVAEYVKGEGAAKVVDRADSALYRAKRDGRNRNFAAE
>NZ_CP004388.1|WP_040060455.1|651228_652476_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MTEPRVVTFGCRLNTYESEVMRDHAKNAGLDDAIIINTCAVTTEAERQARQSIRRLRRENPNAKIFVTGCAVQVNPDKFAKMTEIDRIFGNDAKMKAETFLMPEHERVVVNDIMSVEETASHLVSGFEGRARAFVQVQNGCDHRCTFCIIPFGRGNSRSVPMGEIVSQVRELVANGYGEVVLTGVDITSYGHDLPGKPTLGQMARRLLAQVPELPRLRISSIDPVEVDEDIFRLIETEPRLMPHMHISLQAGDDMVLKRMKRRHLRQDVIDFCDKVRALRADVTFGADIIAGFPTETDEMAENTLRLVDECGLIYLHVFPYSARPGTPAARMPQVPKDIRKERAGALRDAGEIQLNNFLKSRIGLTENVLVEKENTGHTEHFAPVTLDRVIEPGTIAKAKVIGVEDGKLKAELAG
>NZ_CP004388.1|WP_007091256.1|652472_653408_+|signal-recognition-particle-docking-protein-FtsY
MSEEGKKSWFARLKDGLKRSSSKLTTGIADIFTKRRLDDDALEEFEDLLITSDLGVTTAAKLGAELSRTRFDKEVDPAEIQEFIATEVAKILEPVAKPLVIDATKKPHVILVVGVNGSGKTTTIGKLAKTYRDQGLKVMMAAGDTFRAAAVEQLKVWGERTGCPVIARDTGADAAGLAFDAIDQAKREGYDLLLIDTAGRLQNKAHLMDELKKIVRVIHKRDETAPHDTLLVLDATTGQNAHSQVEVFSEATNVTGLIVTKLDGTAKGGVVVALAEKFAKPVHAIGVGESAEDLRPFEAKSFARSLAGLED
>NZ_CP004388.1|WP_007091255.1|653455_654814_-|YegS/Rv2252/BmrU-family-lipid-kinase
MKSTELTGKVCILLTRHKVPDAWRDNGAEPLRAIFEDAGYRAELELCDDPVAMNDFISASCERGDIVVIGGGDGTINAVIDTVIEAGVVMVPLPLGTANDFARSLYIPDDILQAARAAINGQIAMLDIGRVNGKSFVNAASIGVPADARKRIDPDLKRWTGAISYAVANWQSWNDMKPLELSVTCGDNPARNLKLRQLTVTNGQYFGGGLRPRENKRLDDGKLHMFAIQANVDTLSGMDIAAELLFGSVDDSSYAISQECDDIRLEGGEGEPILADGEIISQLPAHFTLEAKVLPVFAPNAFHGETDRTASFQDQEIVNDVALDALDLSLRLSAIYPMATDNKMKAICHDTANRLRDINRRLELALRPYGLPTSSPDPDLHSLEQLRDRAMSWMLPDADMRLARGLKNQSVELGKTLDLCALDDIPGDISAPLKDMKELIGDLQQSLDEFQA

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Crispr_ID: NZ_CP004388_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004388_2

1377661-1378143

Orphan

Consensus_repeat	Method
AATAGCGGTACGATTACGACAAGCGGA	CRISPRCasFinder
TTCNACANTTNTCAATANCGGNACGNTTACGACAAGCGG	CRT

6 spacers

csa3

The CRISPR arrays of NZ_CP004388_2

>merge|NZ_CP004388|2|1377661-1378143|CRISPRCasFinder,CRT
AATAACGGCACGATCACGACGGTGGGTGGCGGGCGCGTGGGCATATTTGGTGATGGGGGGGCTAGAAATGCGCAGTTTGTTAATAACGGTACAATTCGGACAGACGCAGCGAGCGGTTACGGAATGGCCAGTTTCGGGCCGGGTTCTAAATTTTTCAACAATGGCACGCTTACGACAGGCGGTGCGAATGCCCATGCCATAAATGGCACCGGAACCAATTCGACACTTGTCAATAACGGCACGCTTACGACAAGCGGAGATGGTTCGTACGGTCTAAACAGCGCCAACGCCAATTCGACACTCGTTAATAGCGGTACGATTACGACAAGCGGAACAGATTCCTATGGCATCGGAAGCACCAATAGCGGTTCGACACTTTCCAATAGCGGTACGATTACGACAAGCGGAGTTCGTTCCCGTGGCATGTACGCTGACGGGAATGGCGTAACAGCTGTCAATAGCGGTACGATTACCACAAGCGGC

>NZ_CP004388|2|2|1377661-1378143|CRISPRCasFinder
AATAACGGCACGATCACGACGGTGGGT	GGCGGGCGCGTGGGCATATTTGGTGATGGGGGGGCTAGAAATGCGCAGTTTGTT
AATAACGGTACAATTCGGACAGACGCA	GCGAGCGGTTACGGAATGGCCAGTTTCGGGCCGGGTTCTAAATTTTTC
AACAATGGCACGCTTACGACAGGCGGT	GCGAATGCCCATGCCATAAATGGCACCGGAACCAATTCGACACTTGTC
AATAACGGCACGCTTACGACAAGCGGA	GATGGTTCGTACGGTCTAAACAGCGCCAACGCCAATTCGACACTCGTT
AATAGCGGTACGATTACGACAAGCGGA	ACAGATTCCTATGGCATCGGAAGCACCAATAGCGGTTCGACACTTTCC
AATAGCGGTACGATTACGACAAGCGGA	GTTCGTTCCCGTGGCATGTACGCTGACGGGAATGGCGTAACAGCTGTC
AATAGCGGTACGATTACCACAAGCGGC

>NZ_CP004388|2|1|1377804-1378142|CRT
TTCTAAATTTTTCAACAATGGCACGCTTACGACAGGCGG	TGCGAATGCCCATGCCATAAATGGCACCGGAACCAA
TTCGACACTTGTCAATAACGGCACGCTTACGACAAGCGG	AGATGGTTCGTACGGTCTAAACAGCGCCAACGCCAA
TTCGACACTCGTTAATAGCGGTACGATTACGACAAGCGG	AACAGATTCCTATGGCATCGGAAGCACCAATAGCGG
TTCGACACTTTCCAATAGCGGTACGATTACGACAAGCGG	AGTTCGTTCCCGTGGCATGTACGCTGACGGGAATGG
CGTAACAGCTGTCAATAGCGGTACGATTACCACAAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004388.1\|WP_007091424.1\|1376025_1376445_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239332
NZ_CP004388.1\|WP_007091429.1\|1372564_1372930_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
NZ_CP004388.1\|WP_040059618.1\|1386454_1387822_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_CP004388.1\|WP_007091428.1\|1372967_1373615_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP004388.1\|WP_007091420.1\|1381070_1382345_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP004388.1\|WP_040059676.1\|1373790_1374429_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP004388.1\|WP_007091430.1\|1372087_1372558_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP004388.1\|WP_007091426.1\|1374543_1374870_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP004388.1\|WP_076519558.1\|1385849_1386227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004388.1\|WP_007090846.1\|1387932_1388607_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP004388.1\|WP_007091418.1\|1384751_1385174_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP004388.1\|WP_007091432.1\|1369597_1370293_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP004388.1\|WP_007090847.1\|1388594_1389668_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP004388.1\|WP_007091425.1\|1374930_1376016_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP004388.1\|WP_007091423.1\|1376437_1377151_+\|arsenical-resistance-protein-ArsH	unknown	unknown	gnl\|CDD\|274260
NZ_CP004388.1\|WP_139328191.1\|1385292_1385427_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|369548
NZ_CP004388.1\|WP_074624843.1\|1385606_1385714_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|369548
NZ_CP004388.1\|WP_007091419.1\|1382464_1384375_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP004388.1\|WP_007091421.1\|1379581_1380619_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236612
NZ_CP004388.1\|WP_007091431.1\|1370298_1371948_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957

Protein	Function_ID	Function_description	E-value
NZ_CP004388.1\|WP_007091424.1\|1376025_1376445_+\|arsenate-reductase-family-protein	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	1.51145e-51
NZ_CP004388.1\|WP_007091429.1\|1372564_1372930_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	4.73844e-15
NZ_CP004388.1\|WP_040059618.1\|1386454_1387822_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.34001e-30
NZ_CP004388.1\|WP_007091428.1\|1372967_1373615_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	8.23389e-36
NZ_CP004388.1\|WP_007091420.1\|1381070_1382345_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	7.79817e-10
NZ_CP004388.1\|WP_040059676.1\|1373790_1374429_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	4.79274e-39
NZ_CP004388.1\|WP_007091430.1\|1372087_1372558_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	4.94337e-32
NZ_CP004388.1\|WP_007091426.1\|1374543_1374870_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	7.78182e-15
NZ_CP004388.1\|WP_007090846.1\|1387932_1388607_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	9.44657e-111
NZ_CP004388.1\|WP_007091418.1\|1384751_1385174_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.36165e-88
NZ_CP004388.1\|WP_007091432.1\|1369597_1370293_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	4.30779e-17
NZ_CP004388.1\|WP_007090847.1\|1388594_1389668_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP004388.1\|WP_007091425.1\|1374930_1376016_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	6.13193e-124
NZ_CP004388.1\|WP_007091423.1\|1376437_1377151_+\|arsenical-resistance-protein-ArsH	gnl\|CDD\|274260	TIGR02690, arsenical_resistance_protein_ArsH_putative, arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (pfam03358). The function of ArsH is not known. [Cellular processes, Detoxification].	1.35181e-119
NZ_CP004388.1\|WP_139328191.1\|1385292_1385427_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	gnl\|CDD\|369548	pfam07835, COX4_pro_2, Bacterial aa3 type cytochrome c oxidase subunit IV. Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown.	0.0087912
NZ_CP004388.1\|WP_074624843.1\|1385606_1385714_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	gnl\|CDD\|369548	pfam07835, COX4_pro_2, Bacterial aa3 type cytochrome c oxidase subunit IV. Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown.	0.00291511
NZ_CP004388.1\|WP_007091419.1\|1382464_1384375_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP004388.1\|WP_007091421.1\|1379581_1380619_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	6.52282e-26
NZ_CP004388.1\|WP_007091431.1\|1370298_1371948_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	2.41176e-86

>NZ_CP004388.1|WP_007091423.1|1376437_1377151_+|arsenical-resistance-protein-ArsH
MADTPNIQDEQFAPIPAAALFPKAHSTHAPRILVLYGSLRERSFSRFAAEEAARILTRFGAEVRIFNPAGLPLVDETGADHPKVAELRDLVSWCEGMVWSSPERHGAMTGLMKSQIDWIPLSLGAVRPTQGKTLAVMQVCGGSQSFNTVNQLRILGRWMRLLTIPNQSSVAKAWNEFDEAGRMKPSPYYDRIVDVMEELVKFTLLTRDVRDHLVDRYSERVESHAALSARVNQPTAT
>NZ_CP004388.1|WP_007091424.1|1376025_1376445_+|arsenate-reductase-family-protein
MIVVHHNPDCGTSRNVLNIIEKSGDPYQVIEYLKEGWTRPQLIALFAAADLTPRTALRTTRSPAAELGLLDDAISDDALIAAMLAHPVLVNRPIVASPKGVRLCRPSETVLDLLDHLPAGPLYKEDGEMILNEKGARVG
>NZ_CP004388.1|WP_007091425.1|1374930_1376016_+|ACR3-family-arsenite-efflux-transporter
MTENNRANNGADCSADSGKLGVFERFLTLWVGLAMIGGVVIGVVAPGLVDAIAASEVASINLVVAVLIWAMVYPMMVGVDFAAVAGVARQPKGLLVTLVVNWLIKPFTMAFLAVVFFEHVFAPWIAPADAAQYIAGLILLGAAPCTAMVFVWSQLTRGDATYTLVQVSVNDLIMVVAFAPIVALLLGVTDIAVPWETLVLATVLYVVLPLLAGLLTRRILGSKDAIERFSARVKPWSILGLIATVAILFGLQGDVILRQPLVIVLIAVPILIQSYGIFALAYGAAFLLRIPHRMAAPCAMIGTSNFFELAVAVAISLFGLNSGAALATVVGVLVEVPVMLSLVAFANRTRAHFPEAQNKVS
>NZ_CP004388.1|WP_007091426.1|1374543_1374870_+|helix-turn-helix-transcriptional-regulator
MEKIDTLNALSALAHDVRLDIFRLLIKAEPEGMIAGDIAAALDIRANTLSNNLNILSTAGLVRSVREGRAIRYFAEIGTMRDLLVFLMEDCCGGREDICLPMLNKTCR
>NZ_CP004388.1|WP_040059676.1|1373790_1374429_+|VOC-family-protein
MLKLDHITVIAPTLADGVAHVRACLDLDVPFGTRHGYMGTHNHRLQLGNNVYLEIVALDPDGITPGRARWFGLDNQDKIRSDWEEGRRLRGWVAATKSIDTVVSAHGAVFGEKVLLPTAEPTFAFAIPADGSLPLDGAAPSIIDHRGDPTSMAEIPDLGVRLVSMRVEHPDPAFVKALYRELSIDRPPAIIQGAGVRYRAQIKTPTGLKELT
>NZ_CP004388.1|WP_007091428.1|1372967_1373615_-|LysE-family-translocator
MTHAENLWLFFVLLSGIIIVPGMDMFFVIANSLTGGKRAGLSATAGIMLGGVYHTLLGAIGISALLAIAPWLLNVMLFAGAAYMVWIGITLLRSAITVERIRAARTASLWIAFRQGMITCMLNPKAYLFIFAVYPQFIRPHYGPLWSQALIMGIMTAAVQLAVYGAIALAAGTSRNLITGNPVATIFIGRTAGLLFIGVALLTAWQGMVTTGINF
>NZ_CP004388.1|WP_007091429.1|1372564_1372930_-|helix-turn-helix-transcriptional-regulator
MVKYQEAELNDIFAALADPTRRALLARLETEENLSVSELARPFHVSLPAVMKHLDVLSDAGLIARQKTGRTVNVRLNAEPMEHAMEWLARYQRFWSHKLDQLAAFLEQEDDDATKTEKKQD
>NZ_CP004388.1|WP_007091430.1|1372087_1372558_-|SRPBCC-domain-containing-protein
MPDTIPDKPSLMIRRRIAAPPAKVYAAWTQPEKLARWWGPEGCEMIDASIDAKIGGTFRIRFKEPGPDGEIHDVSGTYDAVETDAKLSFSWQWITMPERKSHVTLTFVAEDRGAATILTLHHTQFFDEAARDGHQEGWSSALDKLEVCCTSGCTSA
>NZ_CP004388.1|WP_007091431.1|1370298_1371948_-|MFS-transporter
MSAPNTPVASPTDDTAQTDNKATRREWIGLLVLTLPCLLIAMDMTVLHLAVPALTASLNPTSDQLLWIVDIYGFFIAGSLITMGTLGDRIGRRKLLMIGGGCFGAASVLAAFSDTPEMLIFARGVLGIAGATLMPSTLSLIRSMFHNDKERSFAIAAWMTTFMVGTAAGPLLGGLVLSYFWWGAVFLLNVPVMGLLLIVAPILLPEHKAKSFGRLDLFSAALSLGSVLAIIYGVKVIAAYGFGSDALSALVFGLLGAWVFIRRQRKLADPLLDLDLLKQKTIALPIVIQTAVIFAGMAYFLFLSQALQLVIGLTPIQAGLSMLPATVAGIVGSMGAPVLMGRFKPGQVMTGALILTAAGFGMLSWPGSVVSLYVLVAGATIFSLGITPVAMICTDMVVASAPSDRAGSAAAMSETSAELGGALGIAILGSVGTAIYRDVMIEAVPTGIGNEAADAIRSTLGGAVNALHDLPAAISSDILPLARAAFTDGLQVISIICTILMVLSAIGTLFALRDVHCDTNNDDGTDGVNGDTPYDPAIKQAACATGNVE
>NZ_CP004388.1|WP_007091432.1|1369597_1370293_-|GNAT-family-N-acetyltransferase
MRSPELPPRLESKRFILRDFTPSDRAAFVAYQMDERYRALYGNADNDSTRASSNALFDRFLAWQEEQPRRNFQVGIFDKSSGDLLGCVGLRGKDLPVDSAIFGIELSPTHWGRYRAAIEASTMMIAFGFRELDLASIMGVTASDNKRIARLADWFGAEVVAERHGSENSPEFTTEWTTECGTAKVDWSLKRNLWDHGTPDASRRTDNFAYANCNHKTGTAAEMQKQACEGM
>NZ_CP004388.1|WP_007091421.1|1379581_1380619_-|helix-turn-helix-domain-containing-protein
MTKLKPVPVSNFDTNDIDPRHRFDAWQENIGIFFDLMMSDHECHLTNFFAQIDVYDLQETVFGVTRSQAQQFLRHPRRVIDDDMDHILVQLFLQGGGLTKDNERIVAGDMLIIDLSYPHDMITGDFENLTLVLPRELRPDISDMLAPLHGLKLSKDNPMVRFMATGFLNLWKNIPDMTTQQAVSAVQGTLGLMQGCLLCEGQLPEEIDAPTSVALAKVIYRYIDANLSENITPASLALTFRMSRTHIYRIFAPHGGVANYLWDRRLQRSFQLLSQQRYSHKNIGSIAFECGFNSESHFSRAFRAKFHSTPSQIRADAVNARLHHNGKATTSTGYAAGLPNWVRRL
>NZ_CP004388.1|WP_007091420.1|1381070_1382345_-|calcium-binding-protein
MVELIYGTDGADVLVGTEQDDHIFGRAGSDYIRGLGGNDRFYEIGPGDDTLDGGAGHDHFHASIGDDTLLGGSGNDKLDGGPGADVIDGGPGRDEIRFSYSNDSAKEGVIVNLATGIGVGGDADGDRYFNIEDIRDSRYGDILIGDDGNNAFFQTGAGDGDVMNGGGGDDTFYAAYGSAFSEEQTSIFIGGEGSDTISYIAGWGNDAPYGEYGPQPVINLETGTGRTGDHFISIENVDGSNQSDLIIGDDNDNRLIGNKGGDTIYGRDGDDVIVGENIHGEAGNDTLTGEWYDVSLYGGDGHDTLDAGPIAHEAFSDNILSGGGGNDWLQGNIGDDTFVFDAEASSRDRVVDFESGNDGDTLLLTADLQARSGITDFDSLLDHATETDGGDLYIDFSNGDPWTFGVIVEDISKDDLTPDNVEFG
>NZ_CP004388.1|WP_007091419.1|1382464_1384375_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLQITDLTYRIGGRMILDHVTLTVPDGYKLGLIGRNGAGKSTLLKLISGEIASDGGDVSLSNRTRMGVVSQEAPAGSRSLLDTVLDADTERAALLHEAENVTDPNRIADIYTRLADIDAHTAEARAASILSGLGFDAEAQQRPCDDFSGGWRMRVALAATLFLQPDLLLLDEPTNHLDLEATIWLENYLINYPGTIILISHDRDLLNKAVKHIAHLTDGKVTMYGGNYDKFAKTRREQMELASKHYEKQVAQQKHIQSFIDRFRAKASKAKQAQSRIKMLEKMGPAIAVVEDRSISFDFPSPKELPPPLINIHNGDVGYEPGKPVLRNISLRIDMDDRIALLGANGNGKSTLAKLLANRLELMAGEKVASGKLRIGYFAQHQTDELRPDETPYQHMAALMPDVIEHKVRAQLGRFAFEGQKGDTKVKDLSGGEKARLLFALMTLDAPHMLILDEPTNHLDIDSRDALNHALNAYEGAVIIISHDPYLIEACADRLILVADGAVTAFDGDVAEYRQYLLNRARDERRADKAEANENGEPARPEDKGNRKALRQQAAEKRKAAAPIKREIENLEKQMEKLTERRDKIKDEMADPALYEPDNATKLTTLQKDLGKIENELAEIETRWMEKQEEYEQKVA
>NZ_CP004388.1|WP_007091418.1|1384751_1385174_+|nucleoside-diphosphate-kinase
MAIERTLSIIKPDATRRNLTGKINAVIEDAGLRIVAQKRVALTRAQAEGFYAVHKERSFFGELVDFMVSGPVVVQALEGENAVAKYREVMGATNPANAEEGTIRKQFAESIEANSVHGSDSLENAAIEISYFFAQTDIVG
>NZ_CP004388.1|WP_139328191.1|1385292_1385427_-|aa3-type-cytochrome-c-oxidase-subunit-IV
MQGSDYDNNLVDVHQHGWENWTKFMLWSVISIAVLLLLMAAFLL
>NZ_CP004388.1|WP_074624843.1|1385606_1385714_-|aa3-type-cytochrome-c-oxidase-subunit-IV
MTKTHVDIYNGYTVFMKWGTLSVVAILILMAIFLL
>NZ_CP004388.1|WP_076519558.1|1385849_1386227_-|hypothetical-protein
MKLSVLRLNIPQAILMHTSLLAAVLVAPMLLCADEARADEPSWSQRKCQFYQSFRDQLQPSRDKSELGEEFLKSEDAFVASGCTGRIHVCPTTEAELDYANKMSLRMMNEGATGSFLPYSCAPTD
>NZ_CP004388.1|WP_040059618.1|1386454_1387822_-|IS1182-family-transposase
MLKKPSPHQTELEMVTLDSLVPSDHLLRKIDAVIDFSFIHARVADLYCANNGRPALDPVMMFKALFIGYLFGVRSERQLVREIEVNVAYRWFLQLKLTDKVFDASTLSQNRRRRYHDASVAQDIFDEIVEQAIRHGLVDGKVLYTDSTHLKADANKNKWDREVVAKSRAAYWDDLDLAIEEDRAAHAKKPLKAKERQPVEKETKISRTDPDSGYMVRDGKPKGFFYLDHRTVDGKLGIITDSYATPANLHDSIPYLDRLDRQRQRFDLDVIAVGLDAGYATAAIAKGLEDRDILGVTGYRRPNLREGYIPKRKYVYDPERDAYRCPEGQLLSYATTDRNGYRHYHSDPEKCRTCPVLASCTANAHHRKTVTRHVWQDARDRADAYRLTEWGKRVYKRRKETVERSFADAKQLHGHRYARFRGLINVKCQCLLAAAAQNIKKIALALGPKGPIAEG
>NZ_CP004388.1|WP_007090846.1|1387932_1388607_-|phosphoribosylglycinamide-formyltransferase
MGKVTPLKLAVLVSGGGSNLQAIIDACKTADYPAEIVLVFSNQLDAGGLERARRAGIRAEAISHKGFEGGREAYDSTVSNLIEESGADLVVLAGYLRLVSESFVTRWQGRLINIHPSLLPSFKGLHVHQAALDAGVKYSGCTVHYVVPEVDSGPIIAQAVVPVLPGDDAGTLAQRILKQEHRIYPQVIRWIAEGRVSVDEAGIVTVADANAPDFAQINPVPEPN
>NZ_CP004388.1|WP_007090847.1|1388594_1389668_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTASNGLTYKDSGVDIDAGNALVDAIKPLAKATSRTGVTGGLGGFGALFDLKAAGYNDPVLVSCTDGVGTKLKVAFLADKHDTVGIDLVAMSVNDLVVQGAEPLLFLDYFATGKLAVDKATDVVAGIAEGCKQAGCALIGGETAEMPGMYADGEYDLAGFAVGAAERGELLDGSNVAEGDVILGLASSGVHSNGYSLVRKVVDMAGLGYGDDAPFAPGKNVGEALLEPTKIYVKSCLAAHKAGLVKALAHITGGGLTENVPRVLPENLTAVFDASTWEFLPIFKWLSKQGGIPSVEMARTFNCGIGMCVVVPADKADEAEALLREHGETVSQIGVIGPRAGDGPQVIIKNMAAAWEK

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Crispr_ID: NZ_CP004388_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004388_3

3103414-3103509

Orphan

Consensus_repeat	Method
TTTGATGGCTCATAACCATCAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004388_3

>merge|NZ_CP004388|3|3103414-3103509|CRISPRCasFinder
TTTGATGGCTCATAACCATCAAAATCGCATTTTTTGAAAAAATCATCAATTGAATTTTTAATTTCTCAGCTTTTGATGGCTCATAACCATCAAAAT

>NZ_CP004388|3|3|3103414-3103509|CRISPRCasFinder
TTTGATGGCTCATAACCATCAAAAT	CGCATTTTTTGAAAAAATCATCAATTGAATTTTTAATTTCTCAGCT
TTTGATGGCTCATAACCATCAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004388.1\|WP_007090692.1\|3103645_3103897_-\|DUF2274-domain-containing-protein	unknown	unknown	gnl\|CDD\|370791
NZ_CP004388.1\|WP_007090694.1\|3105073_3106060_-\|P-type-conjugative-transfer-protein-TrbG	unknown	unknown	gnl\|CDD\|274292
NZ_CP004388.1\|WP_040059982.1\|3111545_3111881_-\|TrbC/VIRB2-family-protein	unknown	unknown	gnl\|CDD\|226358
NZ_CP004388.1\|WP_007090690.1\|3101649_3102564_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP004388.1\|WP_040059974.1\|3093459_3094203_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|188170
NZ_CP004388.1\|WP_007090683.1\|3095004_3095361_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198374
NZ_CP004388.1\|WP_101953200.1\|3097204_3097408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004388.1\|WP_007090686.1\|3097759_3098335_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004388.1\|WP_007090687.1\|3098331_3099717_+\|7-cyano-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|238953
NZ_CP004388.1\|WP_007090689.1\|3100865_3101492_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225269
NZ_CP004388.1\|WP_040061035.1\|3095524_3097174_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP004388.1\|WP_007090696.1\|3106773_3108108_-\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|237537
NZ_CP004388.1\|WP_040059978.1\|3099700_3100894_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_CP004388.1\|WP_007090697.1\|3108125_3108836_-\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|184358
NZ_CP004388.1\|WP_007090695.1\|3106065_3106773_-\|conjugal-transfer-protein-TrbF	unknown	unknown	gnl\|CDD\|184356
NZ_CP004388.1\|WP_007090682.1\|3094240_3094978_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP004388.1\|WP_007090699.1\|3111276_3111546_-\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|227593
NZ_CP004388.1\|WP_007090701.1\|3111894_3112875_-\|P-type-conjugative-transfer-ATPase-TrbB	unknown	unknown	gnl\|CDD\|274297
NZ_CP004388.1\|WP_007090693.1\|3103893_3105081_-\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|225499
NZ_CP004388.1\|WP_007090698.1\|3108832_3111283_-\|conjugal-transfer-protein-TrbE	unknown	unknown	gnl\|CDD\|237536

Protein	Function_ID	Function_description	E-value
NZ_CP004388.1\|WP_007090692.1\|3103645_3103897_-\|DUF2274-domain-containing-protein	gnl\|CDD\|370791	pfam10038, DUF2274, Protein of unknown function (DUF2274). Members of this family of hypothetical bacterial proteins have no known function.	6.13806e-27
NZ_CP004388.1\|WP_007090694.1\|3105073_3106060_-\|P-type-conjugative-transfer-protein-TrbG	gnl\|CDD\|274292	TIGR02775, probable_conjugal_transfer_protein_TrbG, P-type conjugative transfer protein TrbG. The TrbG protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbG is a homolog of the F-type TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the vir system VirB9 protein. [Cellular processes, Conjugation].	2.5232e-100
NZ_CP004388.1\|WP_040059982.1\|3111545_3111881_-\|TrbC/VIRB2-family-protein	gnl\|CDD\|226358	COG3838, VirB2, Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion].	2.6514e-21
NZ_CP004388.1\|WP_007090690.1\|3101649_3102564_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.47543e-32
NZ_CP004388.1\|WP_040059974.1\|3093459_3094203_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|188170	TIGR01832, 2-dehydro-3-deoxy-D-gluconate_5-dehydrogenase, 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	1.54104e-124
NZ_CP004388.1\|WP_007090683.1\|3095004_3095361_+\|hypothetical-protein	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	3.35982e-31
NZ_CP004388.1\|WP_007090696.1\|3106773_3108108_-\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0
NZ_CP004388.1\|WP_007090687.1\|3098331_3099717_+\|7-cyano-7-deazaguanine-synthase	gnl\|CDD\|238953	cd01995, ExsB, ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.	1.68509e-06
NZ_CP004388.1\|WP_007090689.1\|3100865_3101492_+\|hypothetical-protein	gnl\|CDD\|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.11651e-06
NZ_CP004388.1\|WP_040061035.1\|3095524_3097174_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	1.72668e-33
NZ_CP004388.1\|WP_007090699.1\|3111276_3111546_-\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|227593	COG5268, TrbD, Type IV secretory pathway, TrbD component [Cell motility and secretion / Intracellular trafficking and secretion].	2.31623e-23
NZ_CP004388.1\|WP_040059978.1\|3099700_3100894_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	1.23089e-15
NZ_CP004388.1\|WP_007090697.1\|3108125_3108836_-\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|184358	PRK13874, PRK13874, conjugal transfer protein TrbJ; Provisional.	3.58171e-73
NZ_CP004388.1\|WP_007090695.1\|3106065_3106773_-\|conjugal-transfer-protein-TrbF	gnl\|CDD\|184356	PRK13872, PRK13872, conjugal transfer protein TrbF; Provisional.	3.97589e-141
NZ_CP004388.1\|WP_007090682.1\|3094240_3094978_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	4.09138e-67
NZ_CP004388.1\|WP_007090701.1\|3111894_3112875_-\|P-type-conjugative-transfer-ATPase-TrbB	gnl\|CDD\|274297	TIGR02782, conjugal_transfer_protein, P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation].	2.72057e-133
NZ_CP004388.1\|WP_007090693.1\|3103893_3105081_-\|TrbI/VirB10-family-protein	gnl\|CDD\|225499	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion].	1.17902e-84
NZ_CP004388.1\|WP_007090698.1\|3108832_3111283_-\|conjugal-transfer-protein-TrbE	gnl\|CDD\|237536	PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.	0

>NZ_CP004388.1|WP_007090690.1|3101649_3102564_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MRERYVEQVRLLMRLLPVIAREEVFALKGGSAINLFYRDLPRLSVDIDLTYLPIEDRETSLANIDQALDRIIAAASRENRDVRFQRIAGGGNLETRIMATRGTTNVKIETSPVMRGTVLPPVLHKVSDAVEETFGFAEMQVLSFEDLYAGKLHAALDRQHPRDLFDVKLLYENEGLTDYLLRVFLVYVSTSGRPPHELLAPALVPIKELHDQEFAGMTRDEVDPADLENVRSRLIADIRNTLTGDFAGFLLSLHDGEPDFNLIGLPAAEQLPAVQWKLLNLLRLKNEHPVKHAELRGRLAKLLS
>NZ_CP004388.1|WP_007090689.1|3100865_3101492_+|hypothetical-protein
MTISSSLTNDETPLVLDTSVLINLHACIYGERILSALPHGIVVPQVVANELEHETSKTNGEHGFLKDLVIAGKVEIATMNDAEYALYARLITGTPSLDDGEAATIAIATARGFCAVIDERKGRAKFSELCSEAVAGWSLDLMLHPHVRRSLGSTTSVDAVYMALRDGRMRIAEEHCDHVVSLIGSYRAVDCTCLPGYRRRSGQWMSDR
>NZ_CP004388.1|WP_040059978.1|3099700_3100894_+|ImmA/IrrE-family-metallo-endopeptidase
MADLNEMSAQEIGRRLRLARENAGIRQDDAAQVVGVSRPTLVSIEKGVRRVRIQELQTLANHYGVSVNALLRREAVHTDLVPRFRKLRETEDEYTREAIQLLNNLAKAEVELENVLGIERRRNYPPERGINEGDVLDLAEKHAQELRDWLGLGAGPIADIFSIIEFDLGIRLYQRRLSTRSKIAGLFTYDDEIGACILLNANHPLPRRIQSAAHELGHFFGTRQVPEVLEENEQFLSRDERYANAFGRAFVTPAQNFGESFQQLKEITGKITRRLVILLAHQYNISRQACVLRLEELGLAKKGTWAWFEDRGGIKDEQAREVLGAAADRADPVKDDANRLISHRISLMAHAAWKRELMSEGQLAELLKVNRLMLRKVIDQIELEDSETDDDLKFSDE
>NZ_CP004388.1|WP_007090687.1|3098331_3099717_+|7-cyano-7-deazaguanine-synthase
MKNTFLNKPRSDLSLCVVEQSQSVKRAYPKGAEIAEVGKHIKFDPDILSTFDYKGWQSLHHDLLVVSAAVEFADRRWKRPRGWSRKFNITVPVLDLAAWQRKEVIESLLSALRHLTADIWSFNFVQWRGPAPIGARQGVLAFTKTKTFTIAYSDGLDSRAVSALSGDKLGLRVRIAKSRNRLKKGDQPFDQIPFKVQGFRGLESSFRSRGFQFSAITAIAAHMSELSRVVVPESGQGALGPVLLPLHNIHPDYRNHPTFFRKMERFVRALLGYQVKYDQPRIWYTKGQTLGAFLELPAKKQEDLTDTRSCWQTRRIVNTNGGRKQCGLCAACLLRRLSMHTAGITEAADAYVISDLKCSDVNESLAVIPQQRDRDIMIEYGSVGARHLQHLAEMADLPDDELRIHASELAAALGEPREDTMKNLRMLLVNHAEEWRAFLTAQEEKSFLKSWMDGGRYGRSK
>NZ_CP004388.1|WP_007090686.1|3097759_3098335_+|hypothetical-protein
MTDGPFRNSKLSGRWKRYGRDLVSDATSQNERTAQACHSMLGDVDLAGISELLKGLKELTLEAQMDLDPVSLAESIFDNHIKAPLVDILQKHLLANLRDQMNSAVALDEAIKSAANAWIGETKNRIDEECIRARDIGDMTKEEYAMSISRNNETFSLIDPNALGNALYTGLKNTFRNANHNREGLDEGPDD
>NZ_CP004388.1|WP_101953200.1|3097204_3097408_-|hypothetical-protein
MISCPANDNGKAKNADIDVHICTISRAVGYHLARKHYLAWEKKQRRAANDNSPATLEEEIKGKGPKG
>NZ_CP004388.1|WP_040061035.1|3095524_3097174_-|recombinase-family-protein
MTRVALYARYSSDNQSENSIEDQFRICREQAKRENLSIVGTYHDAAISGASITLRPGIQSLLQDAQAKKFDMVLAEALDRVSRDQADVATLFKHLKFASVRVITLAEGEISELHVGLKGTMNALFLKDLADKTRRGLRGRVESGKSGGGICYGYDVVKRLNSDGEPVTGERRINEAEAEIVRRIFREFSAGKSPKAIAADLNREGIPGPYDRVWGDTTIRGHVSRGTGIVNNELYIGVMVWNRLHYVKNPATGRRVSRPNPETEWIRTEVPGLRIVGDDLWQAARRRQEEISRKYANLTKGVRAYHAAKLNTLRRPAFLFSGLIKCGCCGGNYGIITRDRYGCLNRYRRGTCDNGRTIVRDKIETRVLAGLTEKLVSAKAVAEAVQAYAEGLNQMNRERRAEAVLDRQKLEKVERGIAGIMSAIEDGMYQSAMKARMEELEQEKQEIMARMSEVPQDVPDIHPNVAEIYRKKVQNLTAALDDPQMYAEAADAIRSVVGEIIVTPGDKRGEFQISLRGELMGILDIATGHKNQSPPEVITKVASGPRNQL
>NZ_CP004388.1|WP_007090683.1|3095004_3095361_+|hypothetical-protein
MLEGVAFGLRDSFEALAATNAKLDRLIAIGGGSASRYWIQLIATTLGVPLSLPKSGEFGAALGAARLGITAATGLAANTVMSLPEVRETIDPDKGLTSTFDDAYQKYSSAYLAIKSCQ
>NZ_CP004388.1|WP_007090682.1|3094240_3094978_-|TRAP-transporter-large-permease
MGLSVMMVITFFAMRRGYRTEGSVGWSEILHVTWQALPPLLMIILVIGGIAIGAFTATEGAAVAVLYSFVLSLMYRMASLQEYLEALKSSAVTSCSILFLIAASGIMSYVMTIAGIPDVIAETILTFDNPIVILLVMNVCLLIIGFFMDLTPAVLIFTPIFLPIATEIGIHPVHLGIIMIFNLGVGSMTPPVGSVLFVGCAVANLRIDQVVRPILPFFFATSAALLLTTYVPWITLALPRFLGLM
>NZ_CP004388.1|WP_040059974.1|3093459_3094203_-|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MMNAFSLSGRKALVTGANAGIGQAIAVAMARAGAEVVCAGRRSCGETVAMIGDAGGVASEVIVDFADPMAGAALFEGANIDILVNNAGIIRRADCIDFTEEDWDAVMDVNAKAVFFTSQAFAKEVFARGGQGKIVNIASLLSFQGGIRVPSYTTSKHGVAGLTRILANEWTARGINVNAIAPGYIATSNTQALRDDPDRSAAILERIPAGRWGRPDDIAETAVYLAAPASNYVSGAILNVDGGWLAR
>NZ_CP004388.1|WP_007090692.1|3103645_3103897_-|DUF2274-domain-containing-protein
MMKLAKLPDRKPVKLTMTLNADLNRKLRDYAALYRETYGESEAVAELIPFMLEAFLENDRAFVRARKEGMTGTAQEGRQSKSS
>NZ_CP004388.1|WP_007090693.1|3103893_3105081_-|TrbI/VirB10-family-protein
MTDRSKESFELRGRPDARIVRFRRSIVIGVTALGSGALLGIAMMALQTPSLRQDNDNDELYHARQQARPDQLENLPKDYSEIKQDVPKLGPPLPGDLGRPIVAAQRAQGMDVTSGELSLAEQRQAQQAIDARESGVFFSLANAVSSEPSNSQASENRATVNGNVGSIATGTDPNAVPDERQRKLDFMRKYDDGGIYNPHVMETPVSPWQVMAGSIIPASLVTGINSDLPGLIIAQVGANVYDTVTGMTVLIPQGARLIGTYDSVVAFGQSRALVVWQRILMPDGTSIRLDNMPASDASGYAGLEDEVDYHTWQLLKGISMATLLGVGTELTLGSDESDLVRAIRESTQQNVDQAGRQITEKNLNIQPTIKIRPGWPVRVIVQRDLVLKPYGGEQR
>NZ_CP004388.1|WP_007090694.1|3105073_3106060_-|P-type-conjugative-transfer-protein-TrbG
MKHNAMMLTCLMMVLTACKAGTPPPAISYDRASFKEATIQAEPARPVEIVEVPKPLPLPGQLMPLPSQSPADKLSPEERVETANKTALLDPSRHGYINAVQVYPYSEGALYRLYGAPGQVTDIALQPGEQLRAVSAGDTVRWVIGDTTSGSGDNQQVHILIKPFAPELKTNLMIATDRRTYHLQMISTAETAMAAISWSYPQDRLVMLRRNNAEALAAQPVDRNLALEKISFGYEIEGDNPSWRPIRAFDDGRKVYIEFPAHIDRGEVPPLFVIGANGDTQLVNYRKRGTYYIVDQLFRAAELRMGTDPQQVVRITHLEASGGGARDD
>NZ_CP004388.1|WP_007090695.1|3106065_3106773_-|conjugal-transfer-protein-TrbF
MPFKRSLQRYGTTPEPETPYQKAGQVWDQRIGSARVQARNWRLMAFGCFALACSLSGGLIWQSLQSRVVPYIVEIDRFGEARAIAPVASDYQPTDAQFAWYLARFIKLVRSVSTDPVLVRQNWLAAYDFVNGQAVQFLNDYANRNDPFAGIGERSVSVEVSSVVRASDQSFQIKWQERIYERGALMGTDRWTAILTVISKPPIDAEELRKNPLGLYVRAIDWSREFDTSSPGSQE
>NZ_CP004388.1|WP_007090696.1|3106773_3108108_-|P-type-conjugative-transfer-protein-TrbL
MDDLGIIDRFMEVFGRYIDSGFGLLSGDVGFLTSILIGIDITLAGLFWALGGEDNILARLIRKVLYVGTFALILNNFQALTGIIYASFAGLGLQTVPGSLTADDLLRPGKIAATGYEAAWPLIAQVGNLVGIPDLFVNALTIFVLLLAWFLVIIAFFILSIQLFITVLEFKLTALAGFVLVPFALWNKTAFLAERVLGNVISSGVKVMVLAVIVGIGSTLFTSFTNALQGQEPDMAAAMSMVLGALALLGLGIFGPGIASGLVSGAPQLGAGAALGTAGAAAGATLLVGGAALSGVGAVAGGGLVALRAATALGAGVTTSFQVGRAASGASGLAGTAAGMGGVARAAGGKASQTVRSVSDRAVKTLKLEAEKGRAAAWAATGGAPAGSASFRASNSNSATAPYWARRLRHEQNMRAHRHSTAQAVRDGDRPGSGANPSLDEKGE
>NZ_CP004388.1|WP_007090697.1|3108125_3108836_-|P-type-conjugative-transfer-protein-TrbJ
MKRIMFKAISIVLPALFWSHVALAAWPVFDATNFAQNILQASRALEQINNQIRSLQNQATMLQNMARNLERLDYSSASQMMSALDRIDGLMMQADGIGFDVAELDLQLARQYPDSYEDTLKASDAARAARERWQNTMTAYRKSLRLQAGLAGNIQQDRQLLNDLVARSQGAPGALAAQQTANQLLALSTKQQMQIQSMLIAQQRAETQDRARKAQSEESGRALTQRFLGTSSVYDE
>NZ_CP004388.1|WP_007090698.1|3108832_3111283_-|conjugal-transfer-protein-TrbE
MLNLAEYRNKNECLADLLPWAALVAPGIILNKDGSFQRTFRFRGPDLESATEAELVGFCARVNNVLKRLGSGWALFFEASRSEAETYPVSDFPDPASWLVDEERRAAFAEARQGAHFESRYYLTLLFIPPPDLQSRGTKLFVETGRKEEGRNWRLELERFTEDTERVLDLLAGFMPEVVPLDDDETLAFLHDTVSTKHHPVHAPEIPVYLDAILADTPLVGGLEPMLGDWHLRSITILGFPDTTRPGVLDALNHQDFAYRWVSRYIPLDRTDANRVLTRLRRQWFAKRKSVAAILREVMTNEASALVDSDADNKAVDADAALQALGGDHVGFGYLTVTVTVFDSDLQAVEDKIRTVERIVNGHGFTTIRETINAVEAWLGSLPGHVYANVRQPLIHTLNLAHLTPLSAVWAGPMGNAHLSEVTGQFCPPLFYAQTSGTTPFRFSTHIGDVGHMLIVGPTGAGKSVLLALMAMQFRRYPDAQIYMFDKGNSARAAVLAMGGEHYPLGASEGLSFQPLREIDDPTIRSWAADWIAMLLDHEKVRVTPEIKDMVWSALSSLASAPVAERTLTGLVMLLQSNAIKAALQPYTLEGPLGYLLDAAEDRLTLSDIHCFETEELMNRAGAVLPVLTWLFHRLEARFDGRPSLLILDEAWIYLDNPLFAARIREWLKVLRKRNVSVIFATQSLADIADSTIAPAIIESCPQRIFLPNDRAIEPQAREAYEHFGLNSRQIDLIAQATPKRHYYLQSRQGNRLFELGLGPIALALCGASDPAAQKRIDQILADHGHTDFAQHFLAARGLDWAGDLIGQFSRTGEAS
>NZ_CP004388.1|WP_007090699.1|3111276_3111546_-|VirB3-family-type-IV-secretion-system-protein
MRDDRSVEGFDIPVHRALTEPIFLGGAPRSVAILNGTFAAAIGLGLQQWVAGLGLFFIGQTLAVFAAKRDPDFLPVLARHLRQRRWWRC
>NZ_CP004388.1|WP_040059982.1|3111545_3111881_-|TrbC/VIRB2-family-protein
MSARHCALSRTLPSAFCLAVVMLIALAPDAMAAGSGMPWEEPLQRILESVQGPVAKIVAVIIIIVTGLTLAFGETSGGFRRLIQIVFGLSIAFAASSFFLSFFSFGGGALI
>NZ_CP004388.1|WP_007090701.1|3111894_3112875_-|P-type-conjugative-transfer-ATPase-TrbB
MNTVSEQRRRDMLRSALGSPISEALKDPAVIEIMVNPDGKLWLDRLGQGCIDTGVVIHPAEAERIIRLVASHIRTETHADQPIVSAELPAQTNAVGGERFEGLLPPVVRAPCFTIRKPAERIYTLADYVRDRIALPLQADALRKAVRDRRNILIVGGTSSGKTTLANTLLAEIADCEDRVILIEDTRELQCAARDCVALRTRRDLVSLSDLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGLATVHANSAHAALYRIEQLVQEVVTVVPRHLIAEAIDLVVFISGRGPARRIETIATLNGLDGNGDYALTPLSLPRLQSI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1431491-1431520	5	0.833
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	1247614-1247643	5	0.833
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	3588-3617	6	0.8
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	155255-155284	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP014527	Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence	159654-159683	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_LR594691	Variovorax sp. WDL1 plasmid 3	535685-535714	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	91954-91983	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	1460-1489	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	636240-636269	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	64536-64565	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	4345-4374	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	18182-18211	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	403168-403197	6	0.8
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_008545	Burkholderia cenocepacia HI2424 plasmid unnamed1, complete sequence	36436-36465	6	0.8
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP017851	Klebsiella variicola strain GJ2 plasmid pKPGJ-2b, complete sequence	8557-8586	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP017286	Klebsiella variicola strain GJ3 plasmid pKPGJ-3b, complete sequence	22975-23004	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP017281	Klebsiella variicola strain GJ1 plasmid pKPGJ-1b, complete sequence	5407-5436	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NC_011281	Klebsiella variicola strain 342 plasmid pKP91, complete sequence	2259-2288	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP044049	Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence	145791-145820	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP041648	Klebsiella pneumoniae strain NKU_KlebA1 plasmid pKlebA1, complete sequence	34672-34701	7	0.767
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP032357	Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence	92186-92215	7	0.767
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	235358-235387	7	0.767
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	819040-819069	7	0.767
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP021119	Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence	119868-119897	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	2238159-2238188	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1069665-1069694	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP045413	Roseovarius sp. THAF8 plasmid pTHAF8_c, complete sequence	13791-13820	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	90775-90804	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	91819-91848	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	381521-381550	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP045395	Roseovarius sp. THAF27 plasmid pTHAF27_b, complete sequence	4148-4177	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	2639-2668	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	637419-637448	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	1595-1624	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	636375-636404	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	71543-71572	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	73445-73474	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	131107-131136	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1433195-1433224	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	1249318-1249347	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	116798-116827	7	0.767
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	239809-239838	7	0.767
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	681080-681109	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	660504-660533	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	2165497-2165526	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1789197-1789226	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	645498-645527	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1106069-1106098	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	242542-242571	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	653563-653592	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	643371-643400	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	997092-997121	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	904796-904825	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	567550-567579	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1432162-1432191	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	804104-804133	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	667177-667206	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	153551-153580	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1076255-1076284	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1045080-1045109	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1142476-1142505	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	646993-647022	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	299999-300028	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_011986	Agrobacterium vitis S4 plasmid pAtS4a, complete sequence	50659-50688	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	763874-763903	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	283331-283360	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	364243-364272	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1216833-1216862	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	989516-989545	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1076259-1076288	8	0.733
NZ_CP004388_1	1.4\|639277\|30\|NZ_CP004388\|CRISPRCasFinder	639277-639306	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1001468-1001497	8	0.733
NZ_CP004388_1	1.2\|639169\|30\|NZ_CP004388\|CRISPRCasFinder	639169-639198	30	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	404685-404714	9	0.7
NZ_CP004388_1	1.3\|639223\|30\|NZ_CP004388\|CRISPRCasFinder	639223-639252	30	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	425294-425323	9	0.7

1. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 5, identity: 0.833

gatcagcggcggcgagggtgaggattatat-	CRISPR spacer
gctcaccggcggcgagggagagga-tacatt	Protospacer
* *** ************ ***** **.**

2. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 5, identity: 0.833

gatcagcggcggcgagggtgaggattatat-	CRISPR spacer
gctcaccggcggcgagggagagga-tacatt	Protospacer
* *** ************ ***** **.**

3. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
ctttgatgccggtcagggcgatgattgggt	Protospacer
* ****************..*****   **

4. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.8

gatcagcggcggcgagggtgaggattatat	CRISPR spacer
gctcaccggcggcgagggagaggatgcttt	Protospacer
* *** ************ ******  * *

5. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cgccatcggcggtgccggagacgacaccat	Protospacer
.*. *..******************** **

6. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
attgagtggcggtgccggcgacgacacgct	Protospacer
  *.* ************ ********* *

7. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacgct	Protospacer
  *.**.*********** ********* *

8. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacgct	Protospacer
  *.**.*********** ********* *

9. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacgct	Protospacer
  *.**.*********** ********* *

10. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tctggcaggcggtgccggcgacgacacgct	Protospacer
* *..* *********** ********* *

11. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tctggcaggcggtgccggcgacgacacgct	Protospacer
* *..* *********** ********* *

12. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tctggcaggcggtgccggcgacgacacgct	Protospacer
* *..* *********** ********* *

13. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tctggcaggcggtgccggcgacgacacgct	Protospacer
* *..* *********** ********* *

14. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_008545 (Burkholderia cenocepacia HI2424 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgtaa-ctggcggtgccggagacgacacgat	CRISPR spacer
-gcagtccggcggtgccggcaacgacacgat	Protospacer
 *.*. *.*********** .**********

15. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP017851 (Klebsiella variicola strain GJ2 plasmid pKPGJ-2b, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

16. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP017286 (Klebsiella variicola strain GJ3 plasmid pKPGJ-3b, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

17. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP017281 (Klebsiella variicola strain GJ1 plasmid pKPGJ-1b, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

18. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NC_011281 (Klebsiella variicola strain 342 plasmid pKP91, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

19. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

20. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP041648 (Klebsiella pneumoniae strain NKU_KlebA1 plasmid pKlebA1, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

21. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032357 (Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence) position: , mismatch: 7, identity: 0.767

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
agctgatgccgggcagggtaatgaaactgc	Protospacer
 ..********* *********** **.*.

22. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 7, identity: 0.767

gatcag--cggcggcgagggtgaggattatat	CRISPR spacer
--ccaacccggcggcgagggtgaggatcatca	Protospacer
  .**.  *******************.**

23. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gatcagcggcggcgagggtgaggattatat	CRISPR spacer
catcagcggcggcgacggtgatgacgtcat	Protospacer
 ************** ***** **.  .**

24. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021119 (Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gatcagcggcggcgagggtgaggattatat	CRISPR spacer
ggtcagcggcggcgtgggtgagcatcgcgt	Protospacer
*.************ ******* **....*

25. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggtgccggcgacgacacgat	Protospacer
  * . .*********** ***********

26. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gcttgacggcggtgccggcgacgacacgat	Protospacer
  * . .*********** ***********

27. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP045413 (Roseovarius sp. THAF8 plasmid pTHAF8_c, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgcatggcggcgccggaaacgacacgat	Protospacer
  *.  ******.******.**********

28. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctctatggcggtgccggtgacgacacgct	Protospacer
. *   ************ ********* *

29. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacctt	Protospacer
  *.**.*********** ********  *

30. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctctatggcggtgccggcgacgacacgtt	Protospacer
. *   ************ ********* *

31. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP045395 (Roseovarius sp. THAF27 plasmid pTHAF27_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgcatggcggcgccggaaacgacacgat	Protospacer
  *.  ******.******.**********

32. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctctatggcggtgccggtgacgacacgct	Protospacer
. *   ************ ********* *

33. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctctatggcggtgccggtgacgacacgct	Protospacer
. *   ************ ********* *

34. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacctt	Protospacer
  *.**.*********** ********  *

35. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgaccggcggtgccggcgacgacacctt	Protospacer
  *.**.*********** ********  *

36. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgctggcggtgccggcaacgacacgtt	Protospacer
  * .************* .******** *

37. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgctggcggtgccggcaacgacacgtt	Protospacer
  * .************* .******** *

38. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctgaacggcggcgccggcgacgacacgat	Protospacer
. *.* .*****.***** ***********

39. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tcttgacggcggcgccggcgacgacacgat	Protospacer
* * . .*****.***** ***********

40. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tcttgacggcggcgccggcgacgacacgat	Protospacer
* * . .*****.***** ***********

41. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctgactggcggtgccggcaacgacacctt	Protospacer
  *.************** .*******  *

42. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.767

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
tctcgacggcggcgccggtgacgacacgat	Protospacer
* * . .*****.***** ***********

43. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 8, identity: 0.733

gatcagcggcggcgagggtgaggattatat	CRISPR spacer
gatcagcggcagcgggggtgaggcgaacgc	Protospacer
**********.***.********   *...

44. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

45. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

46. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cctcgacggcggtgccggcgacgacacgct	Protospacer
. * . .*********** ********* *

47. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

48. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gcttgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

49. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

50. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

51. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

52. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

53. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

54. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

55. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

56. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

57. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

58. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gcttgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

59. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

60. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

61. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

62. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

63. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gcttgatggcggtgccggcgacgacaccct	Protospacer
  * . ************ ********  *

64. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_011986 (Agrobacterium vitis S4 plasmid pAtS4a, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
cgagtgtggaggttccggagacgacacgaa	Protospacer
.* .  *** *** ***************

65. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

66. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

67. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

68. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

69. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

70. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gctcgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

71. spacer 1.4|639277|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.733

tgtaactggcggtgccggagacgacacgat	CRISPR spacer
gcttgacggcggcgccggcgacgacacgat	Protospacer
  * . .*****.***** ***********

72. spacer 1.2|639169|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 9, identity: 0.7

cattgatgccggtcagggtaatgataccgt	CRISPR spacer
ggctggtgtcggtcagggtaatgataatac	Protospacer
 ..**.**.***************** ...

73. spacer 1.3|639223|30|NZ_CP004388|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.7

gatcagcggcggcgagggtgaggattatat	CRISPR spacer
ctccaacggcggcgagggtgaggaccctgc	Protospacer
  .**.******************.. *..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2036678 : 2045980

uncultured_Mediterranean_phage(77.78%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007089635.1\|2036678_2037449_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.4e-44	50.3
WP_007089634.1\|2037584_2038628_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-31	36.8
WP_007089633.1\|2038793_2039024_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	3.2e-05	40.4
WP_007089632.1\|2039059_2039473_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_007089631.1\|2039469_2040474_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.8e-63	53.9
WP_007089630.1\|2040586_2041864_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-103	47.5
WP_007089629.1\|2041873_2042641_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.3e-37	36.4
WP_007089628.1\|2042637_2043291_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-32	46.4
WP_040060815.1\|2043351_2044443_+	peptidoglycan DD-metalloendopeptidase family protein	A0A075BS18	Microcystis_phage	2.0e-15	40.9
WP_007089626.1\|2044502_2045366_-	ATP-binding protein	NA	NA	NA	NA
WP_007089625.1\|2045602_2045980_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.3e-05	35.1

DBSCAN-SWA_2

2101278 : 2110626

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007089574.1\|2101278_2103222_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-13	46.5
WP_040060829.1\|2103789_2104797_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_007089572.1\|2104848_2105919_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.8e-20	57.1
WP_139328159.1\|2106051_2107215_+	serine hydrolase	B6DZZ7	Stx2-converting_phage	6.4e-49	33.6
WP_007089570.1\|2107211_2107871_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.7e-38	42.1
WP_007089569.1\|2107870_2108974_+	DNA polymerase III subunit delta'	D9ZNI9	Clostridium_phage	3.7e-06	24.1
WP_007089568.1\|2109060_2110626_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.7e-100	38.7

DBSCAN-SWA_3

2220160 : 2227233

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082242480.1\|2220160_2221552_-	Hsp70 family protein	G8DDB7	Micromonas_pusilla_virus	3.1e-66	36.2
WP_007089456.1\|2221476_2221863_-	Hsp70 family protein	A0A2P1ELQ7	Moumouvirus	1.7e-06	31.9
WP_007089455.1\|2222035_2223214_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_007089454.1\|2223443_2224016_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.5e-59	56.5
WP_007089453.1\|2224049_2225084_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.3e-65	42.5
WP_007089452.1\|2225080_2225878_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	4.0e-58	50.8
WP_007089451.1\|2225898_2226378_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_007089450.1\|2226525_2227233_+	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	2.8e-07	35.2

DBSCAN-SWA_4

2679725 : 2688863

uncultured_virus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007090383.1\|2679725_2681381_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.4e-179	63.4
WP_007090384.1\|2681440_2681728_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.1e-22	57.4
WP_007090385.1\|2682169_2682733_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	5.7e-35	45.7
WP_007090386.1\|2682741_2683623_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.2e-89	53.7
WP_007090387.1\|2683626_2684529_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.0e-33	34.5
WP_007090388.1\|2684531_2685587_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.7e-94	51.3
WP_007090389.1\|2685631_2687455_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.0e-109	38.9
WP_007090390.1\|2687519_2688863_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	5.0e-29	32.9

DBSCAN-SWA_5

4447043 : 4454239

Methanothermobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007088457.1\|4447043_4448261_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	7.5e-32	31.6
WP_007088456.1\|4448339_4448813_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	3.2e-39	59.9
WP_007088455.1\|4448952_4449408_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_007088454.1\|4449610_4450561_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	6.5e-84	54.5
WP_007088453.1\|4450681_4451485_+	molybdopterin-synthase adenylyltransferase MoeB	A0A291ATS8	Pandoravirus	2.2e-08	32.7
WP_007088452.1\|4451474_4451918_+	DsrE family protein	NA	NA	NA	NA
WP_007088451.1\|4451931_4452606_-	LysE family translocator	NA	NA	NA	NA
WP_007088450.1\|4452687_4453605_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.3e-16	26.8
WP_007088449.1\|4453705_4454239_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	1.3e-12	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP004389

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5876

Shigella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139328338.1\|229_1362_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-88	58.4
WP_139328211.1\|1467_2227_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	7.7e-11	34.5
WP_082242551.1\|2681_2789_-	hypothetical protein	NA	NA	NA	NA
WP_007091708.1\|2772_3219_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.5e-17	40.0
WP_040109933.1\|3614_4313_+	hypothetical protein	NA	NA	NA	NA
WP_007091710.1\|4382_4913_+	hypothetical protein	NA	NA	NA	NA
WP_139328213.1\|4918_5116_+	hypothetical protein	NA	NA	NA	NA
WP_139328214.1\|5126_5876_+	hypothetical protein	K4JTK6	Caulobacter_virus	9.9e-11	35.6

DBSCAN-SWA_2

11939 : 12647

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091720.1\|11939_12647_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	2.0e-16	30.1

DBSCAN-SWA_3

21352 : 27902

Escherichia_phage(33.33%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091729.1\|21352_23080_+	DEAD/DEAH box helicase	A0A1Q1N983	Escherichia_phage	2.2e-37	30.2
WP_007091730.1\|23247_23811_+	hypothetical protein	NA	NA	NA	NA
WP_007091731.1\|23889_24732_-	hypothetical protein	NA	NA	NA	NA
WP_007091732.1\|24750_25548_-	hypothetical protein	L7TN28	Rhizobium_phage	4.4e-09	35.7
WP_007091733.1\|25639_26686_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007091734.1\|26701_27130_-	hypothetical protein	NA	NA	NA	NA
WP_007091735.1\|27143_27902_-	AAA family ATPase	Q2A085	Sodalis_phage	7.4e-14	28.4

DBSCAN-SWA_4

33484 : 34246

Sphingobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091741.1\|33484_34246_-	3'-5' exonuclease	A0A1W6DWR2	Sphingobium_phage	2.7e-16	27.4

DBSCAN-SWA_5

48047 : 50495

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091749.1\|48047_50495_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	5.2e-24	26.6

DBSCAN-SWA_6

76500 : 81262

Micromonas_sp._RCC1109_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040109951.1\|76500_77412_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	4.4e-37	36.4
WP_007092487.1\|77422_78463_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	6.8e-42	31.8
WP_007092576.1\|79123_79816_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_040110023.1\|79812_80199_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_007090958.1\|80632_81262_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.1e-31	48.0

DBSCAN-SWA_7

94961 : 98294

Geobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007090977.1\|94961_98294_+	AAA family ATPase	A0A0H3UZA5	Geobacillus_virus	7.3e-13	22.9

DBSCAN-SWA_8

101863 : 103087

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007090982.1\|101863_103087_-	hypothetical protein	A0A0K1LMQ9	Caulobacter_phage	2.0e-08	45.2

DBSCAN-SWA_9

121180 : 122203

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091000.1\|121180_122203_+	ParM/StbA family protein	A0A222YXF2	Escherichia_phage	1.6e-11	24.4

DBSCAN-SWA_10

153682 : 154858

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091032.1\|153682_154858_-	hypothetical protein	A0A1B1IUG8	uncultured_Mediterranean_phage	1.8e-06	39.8

DBSCAN-SWA_11

157886 : 168893

Caulobacter_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091035.1\|157886_158375_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	3.2e-18	49.5
WP_007091036.1\|158529_158931_+	hypothetical protein	NA	NA	NA	NA
WP_007091037.1\|158961_159192_+	hypothetical protein	NA	NA	NA	NA
WP_040109989.1\|159194_159704_+	hypothetical protein	NA	NA	NA	NA
WP_139328239.1\|159721_160450_+	adenine methyltransferase	A0A223W0E9	Agrobacterium_phage	7.0e-70	53.3
WP_007091040.1\|160504_161722_-	hypothetical protein	NA	NA	NA	NA
WP_139328232.1\|161832_162297_-	hypothetical protein	NA	NA	NA	NA
WP_007091041.1\|162411_163317_+	DNA cytosine methyltransferase	A0A142F1A1	Bacillus_phage	2.0e-18	25.9
WP_007091042.1\|163334_163592_+	hypothetical protein	NA	NA	NA	NA
WP_007091043.1\|163598_164672_+	phosphoadenosine phosphosulfate reductase family protein	H7BVI4	unidentified_phage	1.7e-40	28.6
WP_007091044.1\|164710_165898_+	site-specific DNA-methyltransferase	A0A1S6UAA7	Serratia_phage	1.4e-11	27.6
WP_007091045.1\|165995_166424_+	hypothetical protein	A0A0F6R7L8	Sinorhizobium_phage	7.1e-30	59.8
WP_082242565.1\|167933_168893_+	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	6.9e-65	46.0

DBSCAN-SWA_12

172136 : 172586

Ochrobactrum_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091051.1\|172136_172586_+	hypothetical protein	A0A240F4S6	Ochrobactrum_phage	1.7e-29	53.3

DBSCAN-SWA_13

188500 : 189610

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007091075.1\|188500_189610_-	Y-family DNA polymerase	A0A218MNF2	uncultured_virus	4.2e-58	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004388

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP004389

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection