CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	0 crisprs	NA	0	0	0	0
NC_016816	Pantoea ananatis LMG 5342, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,csa3,RT	3	13	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016816_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016816_1

3919613-3920835

Orphan

Consensus_repeat	Method
GTCTGGGTACTGCCGTAACCGGC	CRISPRCasFinder

25 spacers

The CRISPR arrays of NC_016816_1

>merge|NC_016816|1|3919613-3920835|CRISPRCasFinder
GTTGAGGTGCTGCCGTAACCGGTCGTCAGCACACTCTGTTCGCGCGCCGTCTGCGTACTGCCGTAGCCCGCCGTCAGGCTACTGTGATAACTGGCGGTCTGGGTGCTGCCGTAACCTGCAATGATTGAGCTGTCCGAGCCTGCCGTGCCGGTGCTGCCGTACCCGGCAGTGAGGTCACTGCCTTCGTCTCGCCGTCTGGGTACTGCCGTAGCCCGCGTTAGCACACTGTTGTAGCTGGCTGTCTGCGTGCTGCCATAGCCTGCGATCAGTGAACTATTTGCCCCCGGTGTAGACGTACTGCCATAGCCGGTGATGAGATCGCTTTCGTTCTGCGCGGTCTGCGTACTGCCGTAACCCGCTGTCAGCGTGCTACCGTAACCCGCTGTCTGGGTACTGCCATAGCCCGCGATCAATGAACTTTCATAGCCTGCCGTAGAGGTACTACCATACCCGGCCGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGTGAGCTGTCTTCGCCCGCTGTCTGGGTACTGCCGTAACCGGCGATCAGAGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTACCGTAGCCCGCGATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCTGCAGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTCCCGTAGCCCGCGATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCCGCGGTAAGAGCGCTGCCCTTCTGCGCGGTCTGCGTGCTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTGCCGGTACTGCCGTAACCGGCGGTGAGATCGCTGCCTTTCATGCCGGTCTGCGTGCTGCCGTAACCCGC

>NC_016816|1|1|3919613-3920835|CRISPRCasFinder
GTTGAGGTGCTGCCGTAACCGGT	CGTCAGCACACTCTGTTCGCGCGCC
GTCTGCGTACTGCCGTAGCCCGC	CGTCAGGCTACTGTGATAACTGGCG
GTCTGGGTGCTGCCGTAACCTGC	AATGATTGAGCTGTCCGAGCCTGCC
GTGCCGGTGCTGCCGTACCCGGC	AGTGAGGTCACTGCCTTCGTCTCGCC
GTCTGGGTACTGCCGTAGCCCGC	GTTAGCACACTGTTGTAGCTGGCT
GTCTGCGTGCTGCCATAGCCTGC	GATCAGTGAACTATTTGCCCCCGGT
GTAGACGTACTGCCATAGCCGGT	GATGAGATCGCTTTCGTTCTGCGCG
GTCTGCGTACTGCCGTAACCCGC	TGTCAGCGTGCTACCGTAACCCGCT
GTCTGGGTACTGCCATAGCCCGC	GATCAATGAACTTTCATAGCCTGCC
GTAGAGGTACTACCATACCCGGC	CGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGTGAGCTGTCTTCGCCCGCT
GTCTGGGTACTGCCGTAACCGGC	GATCAGAGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTACCGTAGCCCGC	GATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCTGC	AGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTCCCGTAGCCCGC	GATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCCGC	GGTAAGAGCGCTGCCCTTCTGCGCG
GTCTGCGTGCTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTGCCGGTACTGCCGTAACCGGC	GGTGAGATCGCTGCCTTTCATGCCG
GTCTGCGTGCTGCCGTAACCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016816.1\|WP_014606658.1\|3910509_3911178_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NC_016816.1\|WP_015701018.1\|3913804_3914836_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|182130
NC_016816.1\|WP_015701023.1\|3927550_3928048_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274396
NC_016816.1\|WP_015701025.1\|3932005_3933085_+\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|226678
NC_016816.1\|WP_015701024.1\|3928151_3928805_+\|hypothetical-protein	unknown	unknown	unknown
NC_016816.1\|WP_013024496.1\|3906948_3907395_+\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NC_016816.1\|WP_015701022.1\|3923315_3925052_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_016816.1\|WP_014595268.1\|3908271_3908778_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NC_016816.1\|WP_044035429.1\|3928938_3929529_+\|hypothetical-protein	unknown	unknown	unknown
NC_016816.1\|WP_013024491.1\|3911454_3912165_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_016816.1\|WP_015701020.1\|3915969_3917223_+\|D-galactonate-dehydratase-family-member-RspA	unknown	unknown	gnl\|CDD\|239438
NC_016816.1\|WP_015701017.1\|3912264_3913662_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_016816.1\|WP_015701016.1\|3908909_3910052_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_016816.1\|WP_019105056.1\|3926010_3926148_+\|hypothetical-protein	unknown	unknown	unknown
NC_016816.1\|WP_013024477.1\|3929969_3930806_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NC_016816.1\|WP_015701019.1\|3914877_3915645_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NC_016816.1\|WP_013024476.1\|3930861_3931623_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NC_016816.1\|WP_014595259.1\|3921967_3923305_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_016816.1\|WP_015701015.1\|3907417_3908080_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_016816.1\|WP_013024482.1\|3926478_3927447_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215490

Protein	Function_ID	Function_description	E-value
NC_016816.1\|WP_014606658.1\|3910509_3911178_+\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	2.83561e-146
NC_016816.1\|WP_015701018.1\|3913804_3914836_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NC_016816.1\|WP_015701023.1\|3927550_3928048_+\|hypothetical-protein	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	0.00323947
NC_016816.1\|WP_015701025.1\|3932005_3933085_+\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	2.29132e-95
NC_016816.1\|WP_013024496.1\|3906948_3907395_+\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	3.82631e-07
NC_016816.1\|WP_015701022.1\|3923315_3925052_-\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	9.87772e-179
NC_016816.1\|WP_014595268.1\|3908271_3908778_-\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NC_016816.1\|WP_013024477.1\|3929969_3930806_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NC_016816.1\|WP_013024491.1\|3911454_3912165_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52
NC_016816.1\|WP_015701020.1\|3915969_3917223_+\|D-galactonate-dehydratase-family-member-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	4.95351e-174
NC_016816.1\|WP_015701017.1\|3912264_3913662_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.11697e-143
NC_016816.1\|WP_015701016.1\|3908909_3910052_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.20909e-45
NC_016816.1\|WP_015701019.1\|3914877_3915645_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.81563e-100
NC_016816.1\|WP_013024476.1\|3930861_3931623_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	1.86145e-168
NC_016816.1\|WP_014595259.1\|3921967_3923305_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115
NC_016816.1\|WP_015701015.1\|3907417_3908080_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.04141e-25
NC_016816.1\|WP_013024482.1\|3926478_3927447_+\|hypothetical-protein	gnl\|CDD\|215490	PLN02903, PLN02903, aminoacyl-tRNA ligase.	0.00995516

>NC_016816.1|WP_015701020.1|3915969_3917223_+|D-galactonate-dehydratase-family-member-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSIELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NC_016816.1|WP_015701019.1|3914877_3915645_-|SDR-family-oxidoreductase
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGAAVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARDRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKSSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NC_016816.1|WP_015701018.1|3913804_3914836_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPTASGLEPGQKVAINPSQPCGQCEYCRAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIAVEMGADAAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTEHSKVLVQFS
>NC_016816.1|WP_015701017.1|3912264_3913662_-|MHS-family-MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRMPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMISLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NC_016816.1|WP_013024491.1|3911454_3912165_-|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NC_016816.1|WP_014606658.1|3910509_3911178_+|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVALWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFEPLFGVREMEGLEFTVVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NC_016816.1|WP_015701016.1|3908909_3910052_-|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLADFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMNNTSFVPERLSGFSTRALGHAGDQPKLIPRGDLTPDWGFQRNMVAAGSLYSNARDLSVYLRAHLTAGSDPARNRAFAEINKGVYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFNWSNYLGITLLLNLAEKDR
>NC_016816.1|WP_014595268.1|3908271_3908778_-|RcnB-family-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NC_016816.1|WP_015701015.1|3907417_3908080_-|GNAT-family-N-acetyltransferase
MPDWQPRPLPQREVLQGQVCRLEPFSVASHAEALWQAWSLAEDGRDWTYLSEGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG
>NC_016816.1|WP_013024496.1|3906948_3907395_+|DUF1640-domain-containing-protein
MTLTMMNTHKAFKRLQRAGINDRQAEAMVDIFSALKQDNALSRADVMQAFQRQNQHIFSLSTQLKKTESCLRTDVDELKADVSVLKTDVAVLKTDVSVLKTDVAELKTDVSVLKTDVGSLKNDMRWVQRLLMIMTTTLLMATIKYVLA
>NC_016816.1|WP_014595259.1|3921967_3923305_-|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NC_016816.1|WP_015701022.1|3923315_3925052_-|ABC-transporter-permease-subunit
MNFRFTMLAANRRLLPNVWDAVAFPLIICLIAMVAVGFHQTLMPIDSLKTQAISLDPTNLPEYAMRTTLRMLVAMLASLVFSLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFTVTFFIALFPGQVLGVELAAIFALFTSQAWNMTFSFYQSLRTVPADLVEVSRGFHLTGWQRFWKLDAPFAVPGLVWNMMMSMSGGWFFIVASEAITVGNNTFTLPGVGGYLAQAILHKDIHAVGWVLLTMVIVILAYDQLLFRPLVAWADKFRMENTRSGNAPTSWVRDLMRRTRLIHQIFTPLRLLLSALARISWRWPTAAPVRFENNTRRASRLGDIVWGAFVILLTLYVVYRVITYVQSGVTLDEVKHVFTLGLITLLRVTVLILISSLIWVPLGVMIGLRPALAGKIQPVAQFLAAFPANLMFPVFVIMIVHFHLNPDIWLSPLIVLGTQWYILFNVVAGTTAFPNDYKEAAANFHIRGWQWWRQVMLPGIFPYYITGAITASGGAWNASIVSEFVQWGNTQVTAHGLGAYIAQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYVYAESKFRAN
>NC_016816.1|WP_019105056.1|3926010_3926148_+|hypothetical-protein
MASLDDIVLQPLSASREKATSTLFFMILFIPNIVKGEVKKTQAFD
>NC_016816.1|WP_013024482.1|3926478_3927447_+|hypothetical-protein
MALPGQSSNNLPDYNIARRLGMVSADDIDFTALANRLDCTRDFSQVGIIYSDGREQWLVRPSRRYASSNQSNVSHVVITKVPTVTSQTAAKSITDTLSKPSLANEITSTAFSCGAAVATAFLAIAAGSTVPLTAGATGVVAGIIAAGTFATVGQCINGGARLLLISAGHEESVNWIDSQGWYTATCTALDLISLAGAGAGLKGIFDTYKLMRGASSARAIEWLKTLSRAERKRITQEIIRIQNPGISNSGIKAIMHMGGYPKRFPTEALQKSLQKELANAIINTSAFAGSALTGTIRNPQTVSQSGKYIIGLLQSFNATGIN
>NC_016816.1|WP_015701023.1|3927550_3928048_+|hypothetical-protein
MIDEMEEPVGWHTMGLPLVASCFLAIFSFVIPQTSLWQGIYTLMGWPKYALMIGIMVAAFFYAFLVVLSLLFISKGSYVFLRFHLLVLAITTLFSLFFVCYCFFSWLTGSGVHALLFGLSFPGLFAACLSWKCLDTDMFYRMIAYCLHNRAWRKQIEGQRKNHAS
>NC_016816.1|WP_015701024.1|3928151_3928805_+|hypothetical-protein
MDEISTKFFNKNAHGRLIIMFKHLKNALALSEKFSAKIVKGNDEQLESVKDEMMNEMDASIGWHTMGIPLIISAILTIVSFSLPQISIWHGISKWMDWSKNAFFIGAMITDLVGCIIIIPLMAVVGKGQYLALKSYVYIAFSTATLAISFLIYTILGTLLGADIKTTHLIVSIIGVILIILSYMCINSLVFYRMIAYCLHNRAWRKQIEMQGEKPHL
>NC_016816.1|WP_044035429.1|3928938_3929529_+|hypothetical-protein
MFYNLKSSLELSKKVSAQISKANDEQLESIKDEMTDKMEVPIGWHIMGIPLSSSLICSLFSCAMSLMPLGIKMIDNFNWPKYPTLTGVFITSIIYCLFVYISAFSIVRGFYHAIKIYLAIYVFTTTLASLNFIFDIVAIYQARMHSAWLISSSVISMLLIIFCIRSLNSRMFYKSVAYYLFARAWRKKLYRQKYKP
>NC_016816.1|WP_013024477.1|3929969_3930806_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHRPAKFYYNCAPAHKTLPIRKVTAGDAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFDMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHISVKDLR
>NC_016816.1|WP_013024476.1|3930861_3931623_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDVIPSLLDSAIACFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAQRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NC_016816.1|WP_015701025.1|3932005_3933085_+|glycoside-hydrolase-family-88-protein
MELLSTARQLDLLLNGFTQLKDEGKFNEPNMDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIQKGLPPLNVNTTAPMLPLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFAEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINSLITLQSESGAWHTLLDHPDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVRRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHLKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016816_1	1.1\|3919636\|25\|NC_016816\|CRISPRCasFinder	3919636-3919660	25	NC_016816.1	3919204-3919228	0	1.0
NC_016816_1	1.18\|3920452\|25\|NC_016816\|CRISPRCasFinder	3920452-3920476	25	NC_016816.1	3918148-3918172	2	0.92
NC_016816_1	1.24\|3920740\|25\|NC_016816\|CRISPRCasFinder	3920740-3920764	25	NC_016816.1	3918148-3918172	2	0.92

1. spacer 1.1|3919636|25|NC_016816|CRISPRCasFinder matches to position: 3919204-3919228, mismatch: 0, identity: 1.0

cgtcagcacactctgttcgcgcgcc	CRISPR spacer
cgtcagcacactctgttcgcgcgcc	Protospacer
*************************

2. spacer 1.18|3920452|25|NC_016816|CRISPRCasFinder matches to position: 3918148-3918172, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

3. spacer 1.24|3920740|25|NC_016816|CRISPRCasFinder matches to position: 3918148-3918172, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016816_1	1.5\|3919829\|24\|NC_016816\|CRISPRCasFinder	3919829-3919852	24	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16091	3	0.875
NC_016816_1	1.10\|3920068\|25\|NC_016816\|CRISPRCasFinder	3920068-3920092	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NC_016816_1	1.18\|3920452\|25\|NC_016816\|CRISPRCasFinder	3920452-3920476	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NC_016816_1	1.18\|3920452\|25\|NC_016816\|CRISPRCasFinder	3920452-3920476	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NC_016816_1	1.18\|3920452\|25\|NC_016816\|CRISPRCasFinder	3920452-3920476	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NC_016816_1	1.18\|3920452\|25\|NC_016816\|CRISPRCasFinder	3920452-3920476	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NC_016816_1	1.24\|3920740\|25\|NC_016816\|CRISPRCasFinder	3920740-3920764	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NC_016816_1	1.24\|3920740\|25\|NC_016816\|CRISPRCasFinder	3920740-3920764	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NC_016816_1	1.24\|3920740\|25\|NC_016816\|CRISPRCasFinder	3920740-3920764	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NC_016816_1	1.24\|3920740\|25\|NC_016816\|CRISPRCasFinder	3920740-3920764	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NC_016816_1	1.4\|3919780\|26\|NC_016816\|CRISPRCasFinder	3919780-3919805	26	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	443617-443642	4	0.846
NC_016816_1	1.13\|3920212\|25\|NC_016816\|CRISPRCasFinder	3920212-3920236	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NC_016816_1	1.16\|3920356\|25\|NC_016816\|CRISPRCasFinder	3920356-3920380	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NC_016816_1	1.17\|3920404\|25\|NC_016816\|CRISPRCasFinder	3920404-3920428	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_016816_1	1.19\|3920500\|25\|NC_016816\|CRISPRCasFinder	3920500-3920524	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NC_016816_1	1.22\|3920644\|25\|NC_016816\|CRISPRCasFinder	3920644-3920668	25	MK290737	Pectobacterium phage Arno162, complete genome	39073-39097	4	0.84
NC_016816_1	1.22\|3920644\|25\|NC_016816\|CRISPRCasFinder	3920644-3920668	25	MN270892	Pectobacterium phage Wc4-1, complete genome	70859-70883	4	0.84
NC_016816_1	1.22\|3920644\|25\|NC_016816\|CRISPRCasFinder	3920644-3920668	25	MN270891	Pectobacterium phage Wc4, complete genome	70859-70883	4	0.84
NC_016816_1	1.23\|3920692\|25\|NC_016816\|CRISPRCasFinder	3920692-3920716	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_016816_1	1.4\|3919780\|26\|NC_016816\|CRISPRCasFinder	3919780-3919805	26	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	126399-126424	5	0.808
NC_016816_1	1.7\|3919924\|25\|NC_016816\|CRISPRCasFinder	3919924-3919948	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NC_016816_1	1.7\|3919924\|25\|NC_016816\|CRISPRCasFinder	3919924-3919948	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8
NC_016816_1	1.25\|3920788\|25\|NC_016816\|CRISPRCasFinder	3920788-3920812	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8

1. spacer 1.5|3919829|24|NC_016816|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.875

gttagcacactgttgtagctggct	CRISPR spacer
gttagcacgctgttgtagttggca	Protospacer
********.*********.****

2. spacer 1.10|3920068|25|NC_016816|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
*  **************** *****

3. spacer 1.18|3920452|25|NC_016816|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

4. spacer 1.18|3920452|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

5. spacer 1.18|3920452|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

6. spacer 1.18|3920452|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

7. spacer 1.24|3920740|25|NC_016816|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

8. spacer 1.24|3920740|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

9. spacer 1.24|3920740|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

10. spacer 1.24|3920740|25|NC_016816|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

11. spacer 1.4|3919780|26|NC_016816|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.846

agtgaggtcactgccttcgtctcgcc	CRISPR spacer
atcgaggtcgctcccttcgtctcgcc	Protospacer
* .******.** *************

12. spacer 1.13|3920212|25|NC_016816|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

13. spacer 1.16|3920356|25|NC_016816|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

agtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

14. spacer 1.17|3920404|25|NC_016816|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

15. spacer 1.19|3920500|25|NC_016816|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

16. spacer 1.22|3920644|25|NC_016816|CRISPRCasFinder matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagagcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
******* *************   *

17. spacer 1.22|3920644|25|NC_016816|CRISPRCasFinder matches to MN270892 (Pectobacterium phage Wc4-1, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagagcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
******* *************   *

18. spacer 1.22|3920644|25|NC_016816|CRISPRCasFinder matches to MN270891 (Pectobacterium phage Wc4, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagagcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
******* *************   *

19. spacer 1.23|3920692|25|NC_016816|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

20. spacer 1.4|3919780|26|NC_016816|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agtgaggtcactgccttcgtctcgcc	CRISPR spacer
gtcgaggtgacggccttcgtctcgcc	Protospacer
. .***** ** **************

21. spacer 1.7|3919924|25|NC_016816|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
acatagatcgctttcggtctgcgcg	Protospacer
.   ************ ********

22. spacer 1.7|3919924|25|NC_016816|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
cgcgacatcgctttcgttctgcgct	Protospacer
 ..** ******************

23. spacer 1.25|3920788|25|NC_016816|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

ggtgagatcgctgcctttcatgccg	CRISPR spacer
gttgagatcgctgcctttcataatt	Protospacer
* *******************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

612722 : 691832

Erwinia_phage(60.61%)

tRNA,tail,holin,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013027332.1\|612722_613118_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_014604934.1\|613120_613426_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_013027330.1\|613461_613836_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_013027329.1\|614023_614371_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_015699452.1\|614367_615042_-	DedA family protein	NA	NA	NA	NA
WP_014594687.1\|615354_616131_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_013027326.1\|616218_617523_-	MFS transporter	NA	NA	NA	NA
WP_015699453.1\|617922_619338_+	glucuronate isomerase	NA	NA	NA	NA
WP_015699454.1\|619340_620789_+	tagaturonate reductase	NA	NA	NA	NA
WP_015699455.1\|620791_622282_+	altronate dehydratase	NA	NA	NA	NA
WP_013027322.1\|622336_623308_-	TerC family protein	A0A291LBC5	Escherichia_phage	4.4e-35	36.4
WP_015699456.1\|623568_624549_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013027320.1\|624684_626373_+	chloride channel protein	NA	NA	NA	NA
WP_014604939.1\|626369_626873_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_014594681.1\|626955_628074_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_015699457.1\|628074_630096_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_015699458.1\|630258_630966_-	polyphenol oxidase family protein	NA	NA	NA	NA
WP_013027315.1\|631074_631884_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_015699459.1\|632456_633089_+	carbonic anhydrase	NA	NA	NA	NA
WP_013027313.1\|633085_634561_+	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_014604943.1\|634822_636247_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-19	31.9
WP_015699460.1\|636265_637363_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_022622436.1\|637461_637815_-	anti-adapter protein IraP	NA	NA	NA	NA
WP_014604944.1\|638179_639757_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.9e-22	39.0
WP_014594673.1\|639773_641555_-	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_015699462.1\|641895_643359_+	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
WP_014604946.1\|643781_644021_+	hypothetical protein	NA	NA	NA	NA
WP_015699464.1\|644266_646441_+	EAL domain-containing protein	NA	NA	NA	NA
WP_013027304.1\|647060_647303_-	hypothetical protein	NA	NA	NA	NA
WP_015699467.1\|648039_648348_+	hypothetical protein	NA	NA	NA	NA
WP_013027302.1\|648617_648857_+	hypothetical protein	NA	NA	NA	NA
WP_014604949.1\|648998_649268_+	hypothetical protein	NA	NA	NA	NA
WP_015699468.1\|649410_649686_+	hypothetical protein	NA	NA	NA	NA
WP_071822280.1\|649771_649969_-	hypothetical protein	NA	NA	NA	NA
WP_015699470.1\|650098_650356_-	hypothetical protein	NA	NA	NA	NA
WP_014594668.1\|650670_652599_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_014604954.1\|653264_653459_+	hypothetical protein	NA	NA	NA	NA
WP_013027297.1\|653657_655202_+	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_013027296.1\|655657_657136_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-186	70.3
WP_044035388.1\|657306_658854_+	PRD domain-containing protein	NA	NA	NA	NA
WP_015699472.1\|658846_659320_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_015699473.1\|659340_660750_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_014594662.1\|660753_661611_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_015699474.1\|661817_662402_-	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_014604958.1\|662825_663194_+	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_028715824.1\|663260_663479_+	DUF2732 family protein	F1BUS3	Erwinia_phage	1.0e-08	54.1
WP_014594660.1\|663478_663706_+	TraR/DksA C4-type zinc finger protein	F1BUS2	Erwinia_phage	1.4e-13	50.0
WP_015699477.1\|663702_665766_+	replication endonuclease	F1BUS0	Erwinia_phage	1.7e-262	70.5
WP_013027286.1\|665973_666198_+	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_014604961.1\|666890_667094_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_014604962.1\|667099_667324_+	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_015699479.1\|667307_667817_+	lysozyme	E5G6N1	Salmonella_phage	6.9e-56	65.6
WP_015699480.1\|667813_668248_+	hypothetical protein	F1BUQ1	Erwinia_phage	2.5e-38	59.0
WP_015699481.1\|668334_668805_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.9e-48	62.5
WP_013027279.1\|668897_669482_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_015699482.1\|669478_669829_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	2.8e-48	81.9
WP_014604965.1\|669832_670741_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	9.5e-133	82.1
WP_015699483.1\|670733_671267_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	5.5e-80	79.1
WP_015699484.1\|671336_673160_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	2.0e-73	75.4
WP_014604968.1\|673159_673693_+\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	8.0e-39	47.8
WP_014594650.1\|674170_675340_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.3e-202	89.7
WP_013027271.1\|675352_675865_+\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_013027270.1\|675919_676216_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027268.1\|676248_676371_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_015699486.1\|676363_678430_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	5.7e-08	46.4
WP_013027266.1\|678436_678940_+\|tail	phage tail protein	F1BUT6	Erwinia_phage	9.8e-55	73.8
WP_015699487.1\|678941_680099_+	cytochrome c1	A0A0M5M5V5	Salmonella_phage	2.8e-81	43.2
WP_014604972.1\|680172_680394_+	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_015699488.1\|680771_681302_-	hypothetical protein	NA	NA	NA	NA
WP_148275574.1\|681499_681631_+	hypothetical protein	NA	NA	NA	NA
WP_041455820.1\|682381_683164_+	hypothetical protein	NA	NA	NA	NA
WP_041455821.1\|683174_683951_+	FAD-dependent thymidylate synthase	A0A0K0N765	Gordonia_phage	1.6e-27	36.1
WP_015699492.1\|685592_686108_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_013027259.1\|686178_688023_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_014594644.1\|688462_690208_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-72	37.3
WP_001144069.1\|690324_690540_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_013027257.1\|690818_691832_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.0e-106	58.0

DBSCAN-SWA_2

1974553 : 2018681

Salmonella_phage(32.5%)

capsid,plate,terminase,holin,integrase,tail,lysis

attL 1974430:1974458|attR 2018874:2018902

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1974430:1974458	attL	NA	NA	NA	NA
WP_015700096.1\|1974553_1975732_-\|integrase	tyrosine-type recombinase/integrase	I6PDJ1	Cronobacter_phage	7.2e-149	66.2
WP_015700097.1\|1975892_1977971_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	6.4e-201	50.0
WP_015700098.1\|1977967_1978840_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	6.4e-86	52.3
WP_041455871.1\|1979317_1979626_-	hypothetical protein	NA	NA	NA	NA
WP_015700099.1\|1979867_1980404_-	hypothetical protein	NA	NA	NA	NA
WP_015700100.1\|1980744_1981536_-	hypothetical protein	NA	NA	NA	NA
WP_015700101.1\|1981700_1982396_-	hypothetical protein	A0A088C400	Shewanella_sp._phage	3.9e-25	41.5
WP_015700102.1\|1982395_1983061_-	ATP-binding protein	G9L667	Escherichia_phage	2.9e-70	59.9
WP_015700103.1\|1983062_1983731_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	2.2e-22	35.7
WP_041455872.1\|1983699_1983909_-	hypothetical protein	NA	NA	NA	NA
WP_015700104.1\|1984030_1984435_-	hypothetical protein	NA	NA	NA	NA
WP_015700105.1\|1984564_1984741_+	hypothetical protein	NA	NA	NA	NA
WP_080587426.1\|1985503_1986187_-	helix-turn-helix domain-containing protein	A0A2H4FNG6	Salmonella_phage	3.0e-14	44.4
WP_041455873.1\|1986225_1986462_+	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	6.9e-19	66.7
WP_041455874.1\|1986474_1986777_+	hypothetical protein	I6PCV6	Cronobacter_phage	9.5e-13	47.8
WP_015700107.1\|1986769_1986955_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_155270046.1\|1987010_1987163_+	hypothetical protein	NA	NA	NA	NA
WP_015700108.1\|1987155_1988220_+	replication protein	A0A0N7KZ97	Stx2-converting_phage	6.3e-59	43.3
WP_015700109.1\|1988212_1989625_+	replicative DNA helicase	I6R0N4	Salmonella_phage	1.7e-128	55.1
WP_041456118.1\|1989624_1989981_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.2e-43	69.6
WP_041455875.1\|1990019_1990871_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.8e-69	50.5
WP_041455876.1\|1991852_1992098_+	hypothetical protein	NA	NA	NA	NA
WP_015700112.1\|1992481_1992838_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_167320547.1\|1992843_1993326_+	glycoside hydrolase family protein	A0A1W6JP42	Morganella_phage	1.3e-43	57.1
WP_015700114.1\|1993322_1993823_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	5.4e-29	52.7
WP_015700115.1\|1993827_1994085_+	hypothetical protein	NA	NA	NA	NA
WP_015700116.1\|1994135_1994309_+	hypothetical protein	NA	NA	NA	NA
WP_015700118.1\|1994747_1995383_+	hypothetical protein	F1C5D5	Cronobacter_phage	3.7e-83	66.8
WP_015700119.1\|1995413_1995887_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	2.2e-48	73.7
WP_041455877.1\|1995983_1996598_+	hypothetical protein	NA	NA	NA	NA
WP_015700120.1\|1996645_1996870_-	YegP family protein	NA	NA	NA	NA
WP_015700121.1\|1996971_1998582_+\|terminase	phage terminase large subunit	A0A0M5M1R6	Salmonella_phage	2.3e-291	88.2
WP_015700122.1\|1998592_2000065_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.1e-226	78.6
WP_167320545.1\|2000024_2000690_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	8.1e-73	69.6
WP_015700124.1\|2000725_2001949_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.3e-140	66.6
WP_015700125.1\|2001960_2002458_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	4.1e-61	73.9
WP_015700126.1\|2002467_2003409_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.9e-153	81.8
WP_015700127.1\|2003453_2003789_+	hypothetical protein	NA	NA	NA	NA
WP_015700128.1\|2003790_2004198_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	8.8e-54	77.8
WP_015700129.1\|2004194_2004824_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	5.4e-26	40.6
WP_015700130.1\|2004810_2005200_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	1.3e-51	76.0
WP_015700131.1\|2005189_2005738_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.4e-54	57.2
WP_015700132.1\|2005741_2006887_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	7.7e-148	68.8
WP_015700133.1\|2006899_2007340_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.3e-68	86.3
WP_015700134.1\|2007342_2007774_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	3.8e-47	72.4
WP_015700135.1\|2007803_2007962_+	hypothetical protein	NA	NA	NA	NA
WP_015700136.1\|2007951_2009928_+	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	2.7e-281	71.7
WP_015700137.1\|2009927_2010545_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.9e-55	62.4
WP_015700138.1\|2010541_2010844_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.6e-23	52.0
WP_015700141.1\|2011871_2012222_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	9.9e-22	43.5
WP_015700142.1\|2012432_2013485_+	hypothetical protein	U5P4L0	Shigella_phage	1.5e-89	48.1
WP_041455879.1\|2013501_2014002_+	hypothetical protein	NA	NA	NA	NA
WP_015700143.1\|2014069_2014726_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	8.3e-70	55.2
WP_015700144.1\|2014722_2015076_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.4e-52	85.5
WP_015700145.1\|2015075_2016275_+\|plate	baseplate J/gp47 family protein	A0A2H4J5T1	uncultured_Caudovirales_phage	4.6e-159	72.9
WP_015700146.1\|2016271_2016964_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	7.6e-90	75.7
WP_015700148.1\|2018162_2018681_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	1.3e-30	44.3
2018874:2018902	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2054417 : 2118697

Erwinia_phage(18.75%)

portal,protease,holin,integrase,tRNA,tail

attL 2051169:2051184|attR 2081569:2081584

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2051169:2051184	attL	NA	NA	NA	NA
WP_014605672.1\|2054417_2056196_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	2.1e-11	26.4
WP_013026082.1\|2056195_2056627_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_013026080.1\|2056866_2057610_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013026079.1\|2057646_2058174_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	8.5e-09	27.2
WP_013026078.1\|2058270_2058885_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013026077.1\|2058893_2059898_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.1e-08	24.4
WP_015700166.1\|2059898_2060684_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_014593885.1\|2060680_2061436_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	3.3e-14	29.3
WP_013026074.1\|2061513_2062461_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_013026073.1\|2062475_2063807_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	4.8e-16	37.2
WP_041455881.1\|2063952_2064894_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_014593881.1\|2064923_2066156_-	MFS transporter	NA	NA	NA	NA
WP_013026070.1\|2066241_2067684_-	pyruvate kinase	NA	NA	NA	NA
WP_014593880.1\|2067978_2068842_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013026068.1\|2069212_2070688_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	1.6e-76	35.8
WP_015700167.1\|2070874_2071513_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_015700168.1\|2071567_2072746_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_015700169.1\|2072916_2073561_+	DUF533 domain-containing protein	NA	NA	NA	NA
WP_015700170.1\|2073676_2075749_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_015700171.1\|2075732_2076404_-	exodeoxyribonuclease X	NA	NA	NA	NA
WP_019105100.1\|2076403_2076634_-	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	8.2e-17	67.7
WP_013026061.1\|2076784_2077159_+	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_015700172.1\|2077163_2078039_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_014593872.1\|2078066_2078414_+	YebY family protein	NA	NA	NA	NA
WP_141120393.1\|2078943_2079132_-	hypothetical protein	NA	NA	NA	NA
WP_080587427.1\|2079177_2079396_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.5e-23	76.6
WP_022623257.1\|2079834_2080407_+	hypothetical protein	NA	NA	NA	NA
WP_022623256.1\|2080440_2080803_-\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	2.5e-44	73.6
WP_015700175.1\|2080982_2082005_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	4.2e-153	77.3
2081569:2081584	attR	NA	NA	NA	NA
WP_015700176.1\|2082055_2083171_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_052310185.1\|2083280_2084210_-	hypothetical protein	NA	NA	NA	NA
WP_015700178.1\|2084680_2085082_-	hypothetical protein	NA	NA	NA	NA
WP_022623254.1\|2086113_2086665_+	hypothetical protein	NA	NA	NA	NA
WP_014605683.1\|2086916_2088461_-	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_013026057.1\|2088950_2089655_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_015700180.1\|2089934_2091557_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_015700181.1\|2091553_2092876_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA
WP_029568844.1\|2093145_2093619_+	MEKHLA domain-containing protein	NA	NA	NA	NA
WP_015700182.1\|2093657_2095202_-	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_014605687.1\|2095752_2095947_+	hypothetical protein	NA	NA	NA	NA
WP_014605688.1\|2095985_2097119_-	acyltransferase	Q6QI96	Burkholderia_phage	1.2e-36	32.3
WP_015700183.1\|2097300_2098047_+	SDR family NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.2e-09	32.5
WP_015700184.1\|2098084_2099002_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	6.0e-10	33.3
WP_041455882.1\|2099084_2099498_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013026047.1\|2099532_2099862_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_013026045.1\|2100594_2102277_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.8e-56	30.6
WP_013026044.1\|2102300_2103773_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_014593862.1\|2103790_2104384_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_014593861.1\|2104640_2106671_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	3.4e-21	26.1
WP_015700189.1\|2106802_2108170_+	MFS transporter	NA	NA	NA	NA
WP_013026040.1\|2108266_2108485_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_041455883.1\|2108632_2110060_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_015700191.1\|2110137_2112777_-	PqiB family protein	NA	NA	NA	NA
WP_013026037.1\|2112745_2113990_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_013026036.1\|2114201_2114702_+	GAF domain-containing protein	NA	NA	NA	NA
WP_015700192.1\|2114798_2115500_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_014605697.1\|2115519_2117565_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.4e-85	34.0
WP_013026033.1\|2117815_2118697_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_4

2610462 : 2624195

Pandoravirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013025587.1\|2610462_2611509_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9
WP_015700421.1\|2611510_2612947_-	YdiU family protein	NA	NA	NA	NA
WP_015700422.1\|2613037_2613772_-	EAL domain-containing protein	NA	NA	NA	NA
WP_014605964.1\|2614062_2614521_-	C40 family peptidase	A0A217EQL1	Bacillus_phage	5.5e-12	38.4
WP_029568724.1\|2614587_2615337_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013025582.1\|2615337_2615883_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_013025581.1\|2615916_2616906_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	27.2
WP_006118960.1\|2617005_2617308_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_015700424.1\|2617312_2619700_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	30.9
WP_013025578.1\|2619714_2620698_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_106120997.1\|2620846_2620891_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_006118956.1\|2621012_2621369_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004157374.1\|2621413_2621611_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_026020952.1\|2621711_2622263_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_014593593.1\|2622266_2624195_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-125	36.8

DBSCAN-SWA_5

2936865 : 2996237

Enterobacteria_phage(31.43%)

portal,protease,capsid,terminase,holin,integrase,tail,head

attL 2970828:2970843|attR 2997384:2997399

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015700588.1\|2936865_2938128_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.0e-173	71.8
WP_015700589.1\|2938127_2938367_-	hypothetical protein	I6PD82	Cronobacter_phage	2.0e-18	53.8
WP_015700590.1\|2938578_2939886_-\|tail	tail fiber domain-containing protein	Q5G8V6	Enterobacteria_phage	3.0e-31	32.2
WP_015700591.1\|2939946_2941023_-	hypothetical protein	NA	NA	NA	NA
WP_015700592.1\|2941015_2944246_-	host specificity protein J	E4WL39	Enterobacteria_phage	0.0e+00	60.2
WP_041455950.1\|2944371_2945073_+	hypothetical protein	NA	NA	NA	NA
WP_015700593.1\|2945077_2945695_-\|tail	tail assembly protein	K7PH59	Enterobacterial_phage	4.4e-65	60.7
WP_015700594.1\|2945687_2946407_-	C40 family peptidase	M9NZD8	Enterobacteria_phage	5.1e-97	64.3
WP_015700595.1\|2946409_2947147_-\|tail	phage minor tail protein L	M9NYX1	Enterobacteria_phage	2.4e-118	78.0
WP_041455951.1\|2947199_2947541_-\|tail	phage tail protein	E4WL34	Enterobacteria_phage	7.9e-32	57.7
WP_015700597.1\|2947543_2950888_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	8.0e-302	55.1
WP_015700598.1\|2951138_2951504_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.5e-28	55.9
WP_015700599.1\|2951559_2952015_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	2.2e-61	75.5
WP_041456148.1\|2952046_2952448_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	7.8e-47	73.5
WP_041455952.1\|2952450_2952834_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.2e-37	54.8
WP_041455953.1\|2952826_2953162_-\|head	phage head closure protein	Q7Y406	Yersinia_phage	5.6e-22	53.2
WP_015700602.1\|2953158_2953485_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	2.5e-27	49.1
WP_015700603.1\|2953529_2954744_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.1e-187	83.9
WP_015700604.1\|2954753_2955602_-\|protease	ATP-dependent Clp protease proteolytic subunit	K7PH05	Enterobacteria_phage	4.9e-107	72.3
WP_015700605.1\|2955613_2956918_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	5.8e-216	85.3
WP_015700606.1\|2956917_2958648_-\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	9.6e-275	76.9
WP_015700607.1\|2958651_2959125_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	4.1e-63	72.4
WP_041455954.1\|2959325_2959676_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.1e-49	73.9
WP_052310191.1\|2959923_2960262_+	hypothetical protein	NA	NA	NA	NA
WP_041455956.1\|2960392_2960641_-	hypothetical protein	NA	NA	NA	NA
WP_015700610.1\|2960821_2961103_-	hypothetical protein	G8C7W3	Escherichia_phage	1.6e-30	69.9
WP_041455958.1\|2961102_2961297_-	hypothetical protein	NA	NA	NA	NA
WP_015700611.1\|2961443_2961878_-	hypothetical protein	NA	NA	NA	NA
WP_015700612.1\|2961874_2962300_-	lysozyme	A0A0B5KND4	Acinetobacter_phage	3.2e-38	60.7
WP_041455959.1\|2962283_2962637_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_015700614.1\|2963158_2964241_+	hypothetical protein	U5P4L0	Shigella_phage	8.1e-123	64.2
WP_052310192.1\|2964262_2964775_+	hypothetical protein	NA	NA	NA	NA
WP_041455961.1\|2964790_2965153_-	antitermination protein Q	K7PGW2	Enterobacterial_phage	3.2e-39	66.1
WP_015700615.1\|2965174_2966188_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	2.1e-96	52.4
WP_015700616.1\|2966184_2966979_-	phage regulatory protein/antirepressor Ant	A0A1P8DTE1	Proteus_phage	2.2e-45	47.0
WP_015700617.1\|2967293_2968985_+	hypothetical protein	NA	NA	NA	NA
WP_080587435.1\|2969182_2969344_-	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	5.2e-10	65.2
WP_015700618.1\|2969403_2970312_-	reverse transcriptase	NA	NA	NA	NA
WP_015700619.1\|2970655_2971468_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	1.5e-92	68.7
2970828:2970843	attL	NA	NA	NA	NA
WP_041455963.1\|2971583_2972015_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_015700621.1\|2972024_2972792_-	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	1.1e-57	48.3
WP_041455964.1\|2972909_2973092_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_041455965.1\|2973379_2973916_-	hypothetical protein	R9TRN6	Vibrio_phage	2.2e-12	39.6
WP_071822317.1\|2973935_2974151_-	cell division protein	NA	NA	NA	NA
WP_052310197.1\|2974247_2974892_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.7e-38	40.7
WP_041455968.1\|2975220_2975379_+	DUF1317 family protein	NA	NA	NA	NA
WP_052310193.1\|2975662_2976616_+	HNH endonuclease	NA	NA	NA	NA
WP_071822319.1\|2977144_2977372_+	DUF4224 domain-containing protein	K7PHA0	Enterobacterial_phage	4.6e-12	44.4
WP_015700626.1\|2977371_2978394_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	4.2e-121	62.4
WP_006118776.1\|2978976_2979525_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_013025304.1\|2979593_2981426_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_013025303.1\|2981418_2982078_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_013025302.1\|2982502_2982727_+	DUF2594 family protein	NA	NA	NA	NA
WP_014606161.1\|2982760_2983372_-	autoinducer synthase	NA	NA	NA	NA
WP_013025300.1\|2983494_2984217_-	transcriptional regulator SdiA	NA	NA	NA	NA
WP_015700631.1\|2985137_2985833_-	extensin family protein	NA	NA	NA	NA
WP_013025298.1\|2986117_2987509_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_013025297.1\|2987551_2988526_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_014593360.1\|2988573_2989209_-	HTH-type transcriptional regulator RutR	NA	NA	NA	NA
WP_015700632.1\|2989378_2990293_-	DMT family transporter	NA	NA	NA	NA
WP_013025294.1\|2990862_2991462_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_013025293.1\|2991482_2991713_+	YccJ family protein	NA	NA	NA	NA
WP_024470944.1\|2991768_2993151_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_019106206.1\|2993211_2994849_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
WP_014606165.1\|2995580_2996237_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	53.7
2997384:2997399	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3559186 : 3568045

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015700885.1\|3559186_3560935_-	phage EPS-depolymerase	A0A1S6L3G8	Erwinia_phage	9.7e-158	46.9
WP_013024790.1\|3561134_3561425_-	hypothetical protein	NA	NA	NA	NA
WP_013024789.1\|3561421_3561769_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.6e-17	45.1
WP_013024788.1\|3561765_3562233_-	hypothetical protein	H9C148	Vibrio_phage	1.3e-29	45.3
WP_013024787.1\|3562429_3562708_-	hypothetical protein	NA	NA	NA	NA
WP_013024786.1\|3563130_3563850_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	5.5e-43	35.4
WP_015700887.1\|3564208_3565462_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-91	45.6
WP_014593015.1\|3565471_3566575_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.4e-60	42.4
WP_015700888.1\|3566926_3568045_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-109	56.5

DBSCAN-SWA_7

4107915 : 4169329

uncultured_Caudovirales_phage(25.0%)

transposase,protease,integrase

attL 4160402:4160416|attR 4169702:4169716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013024314.1\|4107915_4108401_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	4.1e-26	51.8
WP_013024313.1\|4108404_4109046_-	stringent starvation protein A	NA	NA	NA	NA
WP_006121723.1\|4109362_4109755_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_006121722.1\|4109770_4110199_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_014595150.1\|4110424_4111552_-	cell division protein ZapE	NA	NA	NA	NA
WP_006121720.1\|4111729_4112131_+	DUF1043 family protein	NA	NA	NA	NA
WP_014595149.1\|4112240_4113623_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.6e-25	29.2
WP_013024309.1\|4113712_4114774_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	7.0e-10	32.2
WP_015701109.1\|4114858_4115836_-	elongation factor P--(R)-beta-lysine ligase	NA	NA	NA	NA
WP_013024307.1\|4115970_4116495_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	3.9e-46	50.9
WP_014606758.1\|4116535_4116670_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_024472200.1\|4116774_4116906_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_013024304.1\|4116954_4117521_-	elongation factor P	NA	NA	NA	NA
WP_013024303.1\|4117561_4118590_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_014606760.1\|4118751_4119102_-	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_013024301.1\|4119294_4120944_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.9e-187	68.5
WP_014606761.1\|4120992_4121286_-	co-chaperone GroES	A0A221S322	uncultured_virus	3.9e-11	38.9
WP_013024299.1\|4121518_4121980_-	FxsA family protein	NA	NA	NA	NA
WP_015701111.1\|4122301_4123738_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_013024297.1\|4123852_4125154_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_013024296.1\|4125211_4125526_+	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_015701113.1\|4125501_4127196_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_015701114.1\|4127260_4127839_+	transcriptional regulator	NA	NA	NA	NA
WP_014606766.1\|4128303_4129269_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033770458.1\|4129298_4130852_-	TraI domain-containing protein	NA	NA	NA	NA
WP_015701116.1\|4131002_4131596_+	hypothetical protein	NA	NA	NA	NA
WP_015701117.1\|4131769_4132759_+	hypothetical protein	NA	NA	NA	NA
WP_015701118.1\|4132851_4134060_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_014606771.1\|4134113_4134668_+	hypothetical protein	NA	NA	NA	NA
WP_019106233.1\|4135559_4136240_+	hypothetical protein	NA	NA	NA	NA
WP_015701119.1\|4136753_4137164_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_029569615.1\|4137337_4137646_+	hypothetical protein	NA	NA	NA	NA
WP_015701120.1\|4137838_4138282_-	hypothetical protein	NA	NA	NA	NA
WP_015701121.1\|4138563_4139199_-	peptidase	NA	NA	NA	NA
WP_015701122.1\|4139695_4140163_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015701123.1\|4140306_4141209_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_015701124.1\|4142486_4142930_+	acetyltransferase	NA	NA	NA	NA
WP_014593505.1\|4142949_4143534_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015700494.1\|4143849_4145025_-	alginate lyase family protein	NA	NA	NA	NA
WP_015701125.1\|4145728_4147666_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-12	30.5
WP_015701119.1\|4148326_4148737_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_015701126.1\|4148819_4150058_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013025476.1\|4150520_4151054_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015701127.1\|4151253_4151856_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	3.1e-07	32.1
WP_014606060.1\|4152315_4153968_+	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_014333112.1\|4154202_4155096_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_026021001.1\|4155125_4155812_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_014333110.1\|4155855_4156458_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014606784.1\|4156763_4157006_+	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	3.8e-28	77.5
WP_014606786.1\|4158369_4159398_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	6.3e-117	61.0
WP_014606787.1\|4159650_4160649_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
4160402:4160416	attL	NA	NA	NA	NA
WP_014606788.1\|4160800_4161961_+	TDT family transporter	NA	NA	NA	NA
WP_014606789.1\|4161957_4162557_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_014606790.1\|4162754_4163663_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_014606791.1\|4163659_4164085_+	universal stress protein	NA	NA	NA	NA
WP_014606792.1\|4164100_4165390_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.6e-120	53.2
WP_019105545.1\|4165433_4166141_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_014606794.1\|4166137_4166518_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.4e-29	57.4
WP_014606795.1\|4166684_4167086_-	VOC family protein	NA	NA	NA	NA
WP_014606796.1\|4167211_4169329_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4169702:4169716	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage