CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_016862	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_S, complete sequence	0 crisprs	NA	0	0
NC_016861	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_L, complete sequence	0 crisprs	cas14j	0	2
NC_016860	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	35	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21464 : 49605

Escherichia_phage(44.44%)

transposase,integrase

attL 41793:41852|attR 49609:50428

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000082169.1\|21464_22247_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
WP_001541544.1\|22972_23482_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
WP_000905606.1\|23475_23961_+	membrane protein	NA	NA	NA	NA
WP_071530243.1\|24237_24525_-	hypothetical protein	NA	NA	NA	NA
WP_000900095.1\|24680_25241_+	inverse autotransporter beta domain-containing protein	NA	NA	NA	NA
WP_001541541.1\|25307_25658_-	helix-turn-helix domain-containing protein	A0A077SLN2	Escherichia_phage	1.9e-44	80.5
WP_001575489.1\|26265_26916_-	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA
WP_001122242.1\|27176_27902_-	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA
WP_001676648.1\|28183_29959_-	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA
WP_001526987.1\|30010_30178_-	hypothetical protein	NA	NA	NA	NA
WP_001526990.1\|30140_30908_-	virulence protein SpvA	NA	NA	NA	NA
WP_001576629.1\|31081_31246_-	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	3.3e-12	63.0
WP_000346691.1\|31419_32313_-	virulence genes transcriptional activator SpvR	NA	NA	NA	NA
WP_001121399.1\|32921_33959_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_001576625.1\|34147_35173_-	ExeA family protein	NA	NA	NA	NA
WP_000098783.1\|35105_36770_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_001067855.1\|37105_37810_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000080861.1\|38096_39233_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000248278.1\|39283_39511_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|39534_39726_+	hypothetical protein	NA	NA	NA	NA
WP_000587837.1\|40207_40750_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|40762_41623_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
41793:41852	attL	NA	NA	NA	NA
WP_001067855.1\|41855_42560_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000184001.1\|42735_43941_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|44096_44300_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|44427_45267_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|45260_45608_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|45771_46563_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001336345.1\|46568_46859_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|46970_47468_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|47612_48626_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|48900_49605_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
49609:50428	attR	NA	NA	NA	NA

DBSCAN-SWA_2

53486 : 62782

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001541564.1\|53486_53903_+	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
WP_001527010.1\|54086_54422_+	hypothetical protein	NA	NA	NA	NA
WP_001541562.1\|54478_55045_+	DUF2913 family protein	NA	NA	NA	NA
WP_000728917.1\|55076_56018_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_000427676.1\|56432_57638_+	AAA family ATPase	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000064274.1\|57637_58612_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	5.1e-84	53.2
WP_000457541.1\|58693_59968_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.0e-156	64.5
WP_000925627.1\|59967_60390_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_000490265.1\|60900_61371_+	hypothetical protein	NA	NA	NA	NA
WP_000369839.1\|61363_61720_+	hypothetical protein	NA	NA	NA	NA
WP_000088645.1\|62101_62782_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_016860

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CRISPR-Cas detection and classification

Crispr_ID: NC_016860_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016860_1

2909154-2909263

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016860_1

>merge|NC_016860|1|2909154-2909263|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>NC_016860|1|1|2909154-2909263|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016860.1\|WP_001161781.1\|2905537_2906365_-\|hypothetical-protein	unknown	unknown	unknown
NC_016860.1\|WP_001520831.1\|2909638_2910922_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NC_016860.1\|WP_001033832.1\|2914666_2915680_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_016860.1\|WP_001520307.1\|2907066_2909136_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NC_016860.1\|WP_010989065.1\|2911938_2912295_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_016860.1\|WP_000973738.1\|2913304_2913679_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NC_016860.1\|WP_001098984.1\|2913675_2914656_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NC_016860.1\|WP_000889012.1\|2915974_2917177_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NC_016860.1\|WP_001536726.1\|2900380_2901406_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|222904
NC_016860.1\|WP_000248794.1\|2904009_2905203_+\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|376935
NC_016860.1\|WP_010989064.1\|2910966_2911785_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NC_016860.1\|WP_000957775.1\|2898602_2898836_-\|DUF2724-domain-containing-protein	unknown	unknown	gnl\|CDD\|371288
NC_016860.1\|WP_000460862.1\|2898843_2899353_-\|phage-regulatory-CII-family-protein	unknown	unknown	gnl\|CDD\|369127
NC_016860.1\|WP_000701821.1\|2906815_2907031_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NC_016860.1\|WP_010989063.1\|2903026_2903620_+\|hypothetical-protein	unknown	unknown	unknown
NC_016860.1\|WP_000480483.1\|2912786_2913308_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NC_016860.1\|WP_000776032.1\|2917250_2917886_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NC_016860.1\|WP_000749979.1\|2912389_2912674_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NC_016860.1\|WP_000102104.1\|2899388_2899628_-\|hypothetical-protein	unknown	unknown	unknown
NC_016860.1\|WP_000052560.1\|2899744_2900377_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374550

Protein	Function_ID	Function_description	E-value
NC_016860.1\|WP_001520831.1\|2909638_2910922_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0
NC_016860.1\|WP_001033832.1\|2914666_2915680_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NC_016860.1\|WP_001520307.1\|2907066_2909136_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NC_016860.1\|WP_010989065.1\|2911938_2912295_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NC_016860.1\|WP_001098984.1\|2913675_2914656_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NC_016860.1\|WP_000889012.1\|2915974_2917177_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NC_016860.1\|WP_001536726.1\|2900380_2901406_+\|site-specific-integrase	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
NC_016860.1\|WP_000052560.1\|2899744_2900377_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374550	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain. The C-terminal domain of the CI repressor functions in oligomer formation.	1.49283e-43
NC_016860.1\|WP_010989064.1\|2910966_2911785_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NC_016860.1\|WP_000957775.1\|2898602_2898836_-\|DUF2724-domain-containing-protein	gnl\|CDD\|371288	pfam10893, DUF2724, Protein of unknown function (DUF2724). This is a family of proteins with unknown function.	1.20897e-15
NC_016860.1\|WP_000460862.1\|2898843_2899353_-\|phage-regulatory-CII-family-protein	gnl\|CDD\|369127	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.	4.55954e-86
NC_016860.1\|WP_000701821.1\|2906815_2907031_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NC_016860.1\|WP_000973738.1\|2913304_2913679_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NC_016860.1\|WP_000480483.1\|2912786_2913308_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NC_016860.1\|WP_000776032.1\|2917250_2917886_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NC_016860.1\|WP_000749979.1\|2912389_2912674_+\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NC_016860.1\|WP_000248794.1\|2904009_2905203_+\|SEC-C-domain-containing-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07

>NC_016860.1|WP_001520307.1|2907066_2909136_+|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NC_016860.1|WP_000701821.1|2906815_2907031_+|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NC_016860.1|WP_001161781.1|2905537_2906365_-|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NC_016860.1|WP_000248794.1|2904009_2905203_+|SEC-C-domain-containing-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NC_016860.1|WP_010989063.1|2903026_2903620_+|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NC_016860.1|WP_001536726.1|2900380_2901406_+|site-specific-integrase
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>NC_016860.1|WP_000052560.1|2899744_2900377_+|helix-turn-helix-domain-containing-protein
MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEAIGRAVKVIKSL
>NC_016860.1|WP_000102104.1|2899388_2899628_-|hypothetical-protein
MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMVKKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVG
>NC_016860.1|WP_000460862.1|2898843_2899353_-|phage-regulatory-CII-family-protein
MFDYKISKHPHFDEACRVFALRHNMAKLAERAGMKVQTLRNKLNPEQPHQLTPSEIWLLTDLTEDSTLVDGFLAQIHCLPCVPMNEVAKEKLPHYVMSATAEIGRIAAGAVSGDVKTTAGRRDVISSINSVTRLMALAAVSIQARLQANPAMASAVDTVTGLGASFGLI
>NC_016860.1|WP_000957775.1|2898602_2898836_-|DUF2724-domain-containing-protein
MLTREPSFASLLVKQSPAMHYGHGWIYLPCGKKWHPCIELSPRQQAVRGIGKKRLLQRLSFNVAGILQTRRKAFPGS
>NC_016860.1|WP_001520831.1|2909638_2910922_+|AAA-family-ATPase
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>NC_016860.1|WP_010989064.1|2910966_2911785_+|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NC_016860.1|WP_010989065.1|2911938_2912295_-|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NC_016860.1|WP_000749979.1|2912389_2912674_+|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NC_016860.1|WP_000480483.1|2912786_2913308_+|PTS-glucitol/sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NC_016860.1|WP_000973738.1|2913304_2913679_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NC_016860.1|WP_001098984.1|2913675_2914656_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NC_016860.1|WP_001033832.1|2914666_2915680_+|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NC_016860.1|WP_000889012.1|2915974_2917177_+|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NC_016860.1|WP_000776032.1|2917250_2917886_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH

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Crispr_ID: NC_016860_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016860_2

3100041-3101393

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACT	PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

21 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_016860_2

>merge|NC_016860|2|3100041-3101393|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACGGTAATTTCTCATCTAACAGCCTGTACGCCTCAGGTTTATCCCCGCTGGCGCGGGGAACACGAATCTAATGCAACAGATGAATAAACACGTAACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCGTCAATGCGAAATTTTCCGCGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCATTCACCAACAACAATATCGCCCTGCAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACACTTCCTTCAGTCTTAACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGGGATAGGAGTTACGATCCAGCCTGGTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_016860|2|2|3100041-3100436|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NC_016860|2|1|3100041-3100435|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NC_016860|2|1|3100102-3100314|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACG	CGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGG	GTGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGG	TTTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGC	CAACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAA	ATGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGG	TAGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCG	TAAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATC	TAACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAAC	AGATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAAT	GCGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAAC	AACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACCGTTGCGTCAGGTT	GATCCAGTGCGTCAGCGGCGGTTTATCCCCGCT
GGCGCGGGGAACACACTTCCTTCAGTCT	TAACGATAATCCGCAACGCGGTTTATCCCCGCT
GGCGCGGGGAACACGAGGGGATAGGAGT	TACGATCCAGCCTGGTTGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCA	ATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATT	ATTTACTGTCGTTGCTCACGGTTTATCCCCGCT


>NC_016860|2|2|3100408-3101393|PILER-CR
	CGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGG	GTGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGG	TTTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGC	CAACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAA	ATGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGG	TAGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCG	TAAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATC	TAACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAAC	AGATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAAT	GCGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAAC	AACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACCGTTGCGTCAGGTT	GATCCAGTGCGTCAGCGGCGGTTTATCCCCGCT
GGCGCGGGGAACACACTTCCTTCAGTCT	TAACGATAATCCGCAACGCGGTTTATCCCCGCT
GGCGCGGGGAACACGAGGGGATAGGAGT	TACGATCCAGCCTGGTTGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCA	ATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATT	ATTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NC_016860|2|2|3100449-3101393|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_016860|2|3|3100510-3101393|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016860.1\|WP_001092263.1\|3096371_3097811_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_016860.1\|WP_000741650.1\|3094174_3094885_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_016860.1\|WP_001219245.1\|3093695_3094175_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_016860.1\|WP_000368584.1\|3105717_3107274_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_016860.1\|WP_001518648.1\|3101489_3101783_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_016860.1\|WP_000029738.1\|3107285_3109949_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_016860.1\|WP_000517480.1\|3094903_3095215_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_016860.1\|WP_000080404.1\|3111434_3112169_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_016860.1\|WP_000281486.1\|3102699_3103350_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_016860.1\|WP_001537530.1\|3095405_3095729_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_016860.1\|WP_001173663.1\|3095779_3096385_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_016860.1\|WP_000372384.1\|3097820_3098729_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_016860.1\|WP_000144832.1\|3101782_3102703_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_016860.1\|WP_000206415.1\|3104088_3105147_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_016860.1\|WP_001221538.1\|3091907_3092669_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_016860.1\|WP_000134246.1\|3092649_3093699_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_016860.1\|WP_000085114.1\|3103331_3104078_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_016860.1\|WP_000117946.1\|3105160_3105721_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_016860.1\|WP_000490481.1\|3098979_3100026_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_016860.1\|WP_001145543.1\|3110393_3111347_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NC_016860.1\|WP_001092263.1\|3096371_3097811_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_016860.1\|WP_000741650.1\|3094174_3094885_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NC_016860.1\|WP_001219245.1\|3093695_3094175_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NC_016860.1\|WP_000368584.1\|3105717_3107274_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_016860.1\|WP_001518648.1\|3101489_3101783_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NC_016860.1\|WP_000029738.1\|3107285_3109949_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_016860.1\|WP_000517480.1\|3094903_3095215_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_016860.1\|WP_000080404.1\|3111434_3112169_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NC_016860.1\|WP_000281486.1\|3102699_3103350_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NC_016860.1\|WP_001537530.1\|3095405_3095729_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NC_016860.1\|WP_001173663.1\|3095779_3096385_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_016860.1\|WP_000372384.1\|3097820_3098729_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_016860.1\|WP_000144832.1\|3101782_3102703_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NC_016860.1\|WP_000206415.1\|3104088_3105147_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NC_016860.1\|WP_001221538.1\|3091907_3092669_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_016860.1\|WP_000134246.1\|3092649_3093699_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_016860.1\|WP_000085114.1\|3103331_3104078_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NC_016860.1\|WP_000117946.1\|3105160_3105721_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_016860.1\|WP_000490481.1\|3098979_3100026_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_016860.1\|WP_001145543.1\|3110393_3111347_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NC_016860.1|WP_000490481.1|3098979_3100026_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_016860.1|WP_000372384.1|3097820_3098729_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_016860.1|WP_001092263.1|3096371_3097811_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_016860.1|WP_001173663.1|3095779_3096385_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_016860.1|WP_001537530.1|3095405_3095729_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_016860.1|WP_000517480.1|3094903_3095215_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_016860.1|WP_000741650.1|3094174_3094885_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_016860.1|WP_001219245.1|3093695_3094175_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_016860.1|WP_000134246.1|3092649_3093699_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_016860.1|WP_001221538.1|3091907_3092669_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_016860.1|WP_001518648.1|3101489_3101783_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_016860.1|WP_000144832.1|3101782_3102703_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_016860.1|WP_000281486.1|3102699_3103350_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NC_016860.1|WP_000085114.1|3103331_3104078_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_016860.1|WP_000206415.1|3104088_3105147_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_016860.1|WP_000117946.1|3105160_3105721_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_016860.1|WP_000368584.1|3105717_3107274_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_016860.1|WP_000029738.1|3107285_3109949_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_016860.1|WP_001145543.1|3110393_3111347_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_016860.1|WP_000080404.1|3111434_3112169_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_016860_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016860_3

3117525-3119506

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

32 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NC_016860_3

>merge|NC_016860|3|3117525-3119506|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCACATGGCCCACCGGCACCACCCGATCCGGTTTATCCCCGCTGGCGCGGGGAACACAAATGACCAAATCAGAAATCTTCACCAAAGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCCGGGGGTTATATAGTTATTTAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCAACTGTCAGTTCGTCGTTAGCCAGTAATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAAACGCATGGAATCCGGTATAAACAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGTAACTGATAGCGAAATATATTGGGATAACGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_016860|3|4|3117525-3119506|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_016860|3|3|3117525-3119506|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_016860|3|3|3117586-3119506|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016860.1\|WP_000036734.1\|3120609_3121908_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_016860.1\|WP_000108313.1\|3116179_3116542_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_016860.1\|WP_000046849.1\|3128411_3129707_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NC_016860.1\|WP_000480218.1\|3125685_3126042_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NC_016860.1\|WP_000210449.1\|3123855_3124656_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_016860.1\|WP_000226838.1\|3126125_3128360_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_016860.1\|WP_000029738.1\|3107285_3109949_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_016860.1\|WP_001532579.1\|3125423_3125720_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_016860.1\|WP_000080404.1\|3111434_3112169_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_016860.1\|WP_001290660.1\|3112244_3113957_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_016860.1\|WP_000210863.1\|3121990_3123628_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_016860.1\|WP_000210927.1\|3113956_3115756_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_016860.1\|WP_001145543.1\|3110393_3111347_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_016860.1\|WP_000706479.1\|3132564_3133707_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NC_016860.1\|WP_001199961.1\|3119802_3120474_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_016860.1\|WP_000206415.1\|3104088_3105147_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_016860.1\|WP_000368584.1\|3105717_3107274_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_016860.1\|WP_000117946.1\|3105160_3105721_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_016860.1\|WP_001208014.1\|3116629_3117427_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_016860.1\|WP_000186400.1\|3129764_3132521_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848

Protein	Function_ID	Function_description	E-value
NC_016860.1\|WP_000036734.1\|3120609_3121908_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_016860.1\|WP_000108313.1\|3116179_3116542_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_016860.1\|WP_000046849.1\|3128411_3129707_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_016860.1\|WP_000480218.1\|3125685_3126042_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NC_016860.1\|WP_000210449.1\|3123855_3124656_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NC_016860.1\|WP_000226838.1\|3126125_3128360_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_016860.1\|WP_000029738.1\|3107285_3109949_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_016860.1\|WP_001532579.1\|3125423_3125720_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NC_016860.1\|WP_000080404.1\|3111434_3112169_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NC_016860.1\|WP_001290660.1\|3112244_3113957_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_016860.1\|WP_000210863.1\|3121990_3123628_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_016860.1\|WP_000210927.1\|3113956_3115756_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_016860.1\|WP_001145543.1\|3110393_3111347_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_016860.1\|WP_000706479.1\|3132564_3133707_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NC_016860.1\|WP_001199961.1\|3119802_3120474_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_016860.1\|WP_000206415.1\|3104088_3105147_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NC_016860.1\|WP_000368584.1\|3105717_3107274_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_016860.1\|WP_000117946.1\|3105160_3105721_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_016860.1\|WP_001208014.1\|3116629_3117427_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.10968e-101
NC_016860.1\|WP_000186400.1\|3129764_3132521_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>NC_016860.1|WP_001208014.1|3116629_3117427_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRSYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_016860.1|WP_000108313.1|3116179_3116542_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_016860.1|WP_000210927.1|3113956_3115756_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_016860.1|WP_001290660.1|3112244_3113957_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_016860.1|WP_000080404.1|3111434_3112169_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_016860.1|WP_001145543.1|3110393_3111347_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_016860.1|WP_000029738.1|3107285_3109949_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_016860.1|WP_000368584.1|3105717_3107274_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_016860.1|WP_000117946.1|3105160_3105721_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_016860.1|WP_000206415.1|3104088_3105147_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_016860.1|WP_001199961.1|3119802_3120474_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_016860.1|WP_000036734.1|3120609_3121908_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_016860.1|WP_000210863.1|3121990_3123628_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_016860.1|WP_000210449.1|3123855_3124656_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_016860.1|WP_001532579.1|3125423_3125720_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NC_016860.1|WP_000480218.1|3125685_3126042_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NC_016860.1|WP_000226838.1|3126125_3128360_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NC_016860.1|WP_000046849.1|3128411_3129707_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NC_016860.1|WP_000186400.1|3129764_3132521_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NC_016860.1|WP_000706479.1|3132564_3133707_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016860_2	2.13\|3100615\|33\|NC_016860\|PILER-CR	3100615-3100647	33	CP051275	Salmonella phage SW-37, complete genome	24294-24326	1	0.97
NC_016860_2	2.13\|3100615\|33\|NC_016860\|PILER-CR	3100615-3100647	33	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44003	1	0.97
NC_016860_2	2.28\|3100601\|32\|NC_016860\|CRT,CRISPRCasFinder	3100601-3100632	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NC_016860_2	2.28\|3100601\|32\|NC_016860\|CRT,CRISPRCasFinder	3100601-3100632	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NC_016860_3	3.5\|3117798\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3117798-3117829	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NC_016860_3	3.5\|3117798\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3117798-3117829	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NC_016860_3	3.11\|3118165\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118165-3118196	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NC_016860_2	2.28\|3100601\|32\|NC_016860\|CRT,CRISPRCasFinder	3100601-3100632	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NC_016860_2	2.10\|3100436\|28\|NC_016860\|PILER-CR	3100436-3100463	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
NC_016860_2	2.15\|3100737\|33\|NC_016860\|PILER-CR	3100737-3100769	33	MT774487	Salmonella phage MG40, complete genome	21745-21777	6	0.818
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
NC_016860_2	2.6\|3100375\|32\|NC_016860\|CRISPRCasFinder,CRT	3100375-3100406	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NC_016860_2	2.6\|3100375\|32\|NC_016860\|CRISPRCasFinder,CRT	3100375-3100406	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NC_016860_2	2.6\|3100375\|32\|NC_016860\|CRISPRCasFinder,CRT	3100375-3100406	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NC_016860_2	2.7\|3100132\|31\|NC_016860\|PILER-CR	3100132-3100162	31	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10087	7	0.774
NC_016860_2	2.15\|3100737\|33\|NC_016860\|PILER-CR	3100737-3100769	33	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39484	7	0.788
NC_016860_2	2.15\|3100737\|33\|NC_016860\|PILER-CR	3100737-3100769	33	MH370364	Salmonella phage S107, complete genome	29958-29990	7	0.788
NC_016860_2	2.15\|3100737\|33\|NC_016860\|PILER-CR	3100737-3100769	33	MH370382	Salmonella phage S135, complete genome	29958-29990	7	0.788
NC_016860_2	2.15\|3100737\|33\|NC_016860\|PILER-CR	3100737-3100769	33	MH370383	Salmonella phage S137, complete genome	29958-29990	7	0.788
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NC_016860_2	2.33\|3100906\|32\|NC_016860\|CRT,CRISPRCasFinder	3100906-3100937	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NC_016860_2	2.33\|3100906\|32\|NC_016860\|CRT,CRISPRCasFinder	3100906-3100937	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
NC_016860_3	3.24\|3118958\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118958-3118989	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
NC_016860_2	2.2\|3100131\|32\|NC_016860\|CRISPRCasFinder,CRT	3100131-3100162	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NC_016860_2	2.5\|3100314\|32\|NC_016860\|CRISPRCasFinder,CRT	3100314-3100345	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NC_016860_2	2.5\|3100314\|32\|NC_016860\|CRISPRCasFinder,CRT	3100314-3100345	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NC_016860_2	2.18\|3100920\|33\|NC_016860\|PILER-CR	3100920-3100952	33	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142293-142325	8	0.758
NC_016860_2	2.18\|3100920\|33\|NC_016860\|PILER-CR	3100920-3100952	33	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29080	8	0.758
NC_016860_2	2.32\|3100845\|32\|NC_016860\|CRT,CRISPRCasFinder	3100845-3100876	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NC_016860_2	2.36\|3101089\|32\|NC_016860\|CRT,CRISPRCasFinder	3101089-3101120	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NC_016860_2	2.36\|3101089\|32\|NC_016860\|CRT,CRISPRCasFinder	3101089-3101120	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NC_016860_3	3.8\|3117981\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3117981-3118012	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NC_016860_3	3.8\|3117981\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3117981-3118012	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NC_016860_3	3.13\|3118287\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118287-3118318	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NC_016860_3	3.16\|3118470\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118470-3118501	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NC_016860_3	3.16\|3118470\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118470-3118501	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NC_016860_3	3.17\|3118531\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118531-3118562	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NC_016860_3	3.26\|3119080\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119080-3119111	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
NC_016860_2	2.30\|3100723\|32\|NC_016860\|CRT,CRISPRCasFinder	3100723-3100754	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NC_016860_3	3.10\|3118104\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118104-3118135	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NC_016860_3	3.14\|3118348\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118348-3118379	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NC_016860_3	3.19\|3118653\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118653-3118684	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NC_016860_3	3.21\|3118775\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118775-3118806	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NC_016860_3	3.21\|3118775\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118775-3118806	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NC_016860_3	3.23\|3118897\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118897-3118928	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NC_016860_3	3.23\|3118897\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118897-3118928	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NC_016860_3	3.23\|3118897\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118897-3118928	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NC_016860_2	2.1\|3100070\|32\|NC_016860\|CRISPRCasFinder,CRT	3100070-3100101	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NC_016860_2	2.1\|3100070\|32\|NC_016860\|CRISPRCasFinder,CRT	3100070-3100101	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NC_016860_2	2.21\|3101103\|33\|NC_016860\|PILER-CR	3101103-3101135	33	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53287	10	0.697
NC_016860_2	2.28\|3100601\|32\|NC_016860\|CRT,CRISPRCasFinder	3100601-3100632	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NC_016860_2	2.35\|3101028\|32\|NC_016860\|CRT,CRISPRCasFinder	3101028-3101059	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NC_016860_2	2.36\|3101089\|32\|NC_016860\|CRT,CRISPRCasFinder	3101089-3101120	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NC_016860_3	3.1\|3117554\|32\|NC_016860\|CRISPRCasFinder,CRT	3117554-3117585	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NC_016860_3	3.4\|3117737\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3117737-3117768	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NC_016860_3	3.18\|3118592\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118592-3118623	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NC_016860_3	3.22\|3118836\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118836-3118867	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
NC_016860_3	3.27\|3119141\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3119141-3119172	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NC_016860_3	3.20\|3118714\|32\|NC_016860\|CRISPRCasFinder,CRT,PILER-CR	3118714-3118745	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.13|3100615|33|NC_016860|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtggc	Protospacer
.********************************

2. spacer 2.13|3100615|33|NC_016860|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtggc	Protospacer
***************************.*****

3. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.11|3118165|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 2.10|3100436|28|NC_016860|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

10. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

11. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

12. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

13. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.818

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatggc	Protospacer
****  **********************  . *

14. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

15. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

16. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

37. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

38. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

39. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

40. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

41. spacer 2.7|3100132|31|NC_016860|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 7, identity: 0.774

cgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
ttcaatattggggaaaaacccctcgttacct	Protospacer
.  **** *************** **** *.

42. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

43. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

44. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

45. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

46. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

47. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

48. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

49. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

50. spacer 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

51. spacer 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

52. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

53. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

54. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

55. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

56. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

57. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

58. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

59. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

60. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

61. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

62. spacer 2.2|3100131|32|NC_016860|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

63. spacer 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

64. spacer 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

65. spacer 2.18|3100920|33|NC_016860|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

66. spacer 2.18|3100920|33|NC_016860|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

67. spacer 2.32|3100845|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

68. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

69. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

70. spacer 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

71. spacer 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

72. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

73. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

74. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

75. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

76. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

77. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

78. spacer 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

79. spacer 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

80. spacer 3.17|3118531|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

81. spacer 3.26|3119080|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

82. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************

83. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

84. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

85. spacer 3.10|3118104|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

86. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

87. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

88. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

89. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

90. spacer 3.19|3118653|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

91. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

92. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

93. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

94. spacer 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

95. spacer 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

96. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

97. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

98. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

99. spacer 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

100. spacer 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

101. spacer 2.21|3101103|33|NC_016860|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.697

cgttgcgtcaggttgatccagtgcgtcagcggc	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagattc	Protospacer
.   .**.********** **********   *

102. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

103. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

104. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

105. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

106. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

107. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

108. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

109. spacer 3.1|3117554|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

110. spacer 3.4|3117737|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

111. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

112. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

113. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

114. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

115. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

116. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

117. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

118. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

119. spacer 3.22|3118836|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

120. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

121. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

122. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

123. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

124. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

125. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

126. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

364980 : 409928

Enterobacteria_phage(77.61%)

terminase,integrase,coat,protease,lysis,portal

attL 355750:355766|attR 418519:418535

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
355750:355766	attL	NA	NA	NA	NA
WP_001043675.1\|364980_366033_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
WP_001285275.1\|366315_367419_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893231.1\|367430_368681_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
WP_000051897.1\|368886_370050_-\|integrase	site-specific integrase	Q76H30	Enterobacteria_phage	3.7e-230	100.0
WP_155675089.1\|370279_370420_-	hypothetical protein	A0A0M4QWX3	Salmonella_phage	4.2e-16	97.8
WP_000002104.1\|370488_370773_-	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
WP_000371199.1\|370765_371050_-	DUF4752 family protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
WP_025617570.1\|371049_371694_-	ead/Ea22-like family protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
WP_071533029.1\|371680_371914_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_000812203.1\|371910_372420_-	hypothetical protein	Q76H44	Enterobacteria_phage	2.8e-89	100.0
WP_001214777.1\|372416_372587_-	DUF2737 family protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
WP_001111291.1\|372597_372891_-	DUF2856 family protein	Q76H42	Enterobacteria_phage	1.4e-48	100.0
WP_001253476.1\|372937_373222_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
WP_001046968.1\|373221_373929_-	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
WP_000902092.1\|373925_374069_-	hypothetical protein	A0A2H5BFM6	Salmonella_phage	6.4e-20	100.0
WP_000156731.1\|374058_374247_-	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_000141641.1\|374227_374386_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_000776963.1\|374470_374785_-	Superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
WP_000713613.1\|375060_375348_-	hypothetical protein	Q76H36	Enterobacteria_phage	2.7e-49	100.0
WP_015974224.1\|375381_376026_-	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	6.5e-51	100.0
WP_000213982.1\|376109_376304_-	Restriction inhibitor protein ral	Q76H34	Enterobacteria_phage	1.9e-30	100.0
WP_001066179.1\|376517_377105_+	super-infection exclusion protein B	Q76H59	Enterobacteria_phage	1.4e-100	100.0
WP_000216178.1\|377117_377420_-	hypothetical protein	Q76H58	Enterobacteria_phage	9.7e-50	100.0
WP_000834175.1\|377783_377987_+	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
WP_001532928.1\|378025_379105_-	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
WP_000712403.1\|379269_379959_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_000182204.1\|380069_380285_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_001103492.1\|380395_380677_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_000166961.1\|380711_380873_+	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_000539342.1\|380859_381681_+	replication protein	Q76H52	Enterobacteria_phage	5.2e-154	100.0
WP_001248410.1\|381677_383054_+	AAA family ATPase	Q76H51	Enterobacteria_phage	1.9e-254	100.0
WP_001036030.1\|383050_383320_+	hypothetical protein	Q76H50	Enterobacteria_phage	4.9e-45	100.0
WP_000736891.1\|383393_383831_+	recombination protein NinB	Q76H49	Enterobacteria_phage	4.5e-80	100.0
WP_000679703.1\|383827_384001_+	hypothetical protein	Q76H74	Enterobacteria_phage	2.3e-32	100.0
WP_000113770.1\|383967_384144_+	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
WP_001532927.1\|384146_384488_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
WP_000950963.1\|384480_384657_+	protein ninF	Q76H71	Enterobacteria_phage	6.7e-27	100.0
WP_001108073.1\|384649_385261_+	recombination protein NinG	Q76H70	Enterobacteria_phage	7.9e-99	100.0
WP_000036320.1\|385257_385482_+	hypothetical protein	Q76H69	Enterobacteria_phage	6.3e-38	100.0
WP_000149882.1\|385478_385682_+	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
WP_000219133.1\|385662_385842_+	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
WP_001047566.1\|385838_386612_+	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
WP_000286100.1\|387042_387246_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_024136257.1\|387223_387721_+	lysozyme	B8K1G9	Salmonella_phage	4.5e-92	100.0
WP_001687043.1\|387717_388185_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
WP_000877028.1\|388397_388928_+	KilA-N domain-containing protein	Q76H61	Enterobacteria_phage	1.3e-94	100.0
WP_000808099.1\|389150_389393_+	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
WP_001140562.1\|389396_389786_+	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
WP_001687044.1\|389785_390190_+	hypothetical protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
WP_000729923.1\|390193_390682_+	hypothetical protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
WP_000417860.1\|390659_392159_+\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
WP_000774652.1\|392158_394336_+\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
WP_000433855.1\|394349_395261_+	scaffold protein	Q76H22	Enterobacteria_phage	1.5e-162	100.0
WP_001196937.1\|395260_396553_+\|coat	coat protein	Q76H21	Enterobacteria_phage	1.1e-243	100.0
WP_000538670.1\|396593_397154_+	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
WP_001166103.1\|397137_397638_+	packaged DNA stabilization protein p27	Q76H19	Enterobacteria_phage	4.2e-90	100.0
WP_001122420.1\|397597_399016_+	packaged DNA stabilization protein gp10	Q76H18	Enterobacteria_phage	6.4e-277	100.0
WP_000774917.1\|399019_399721_+	hypothetical protein	Q76H17	Enterobacteria_phage	1.7e-76	100.0
WP_000627593.1\|399720_400176_+	DUF2824 family protein	Q76H16	Enterobacteria_phage	1.8e-87	100.0
WP_000964904.1\|400178_400868_+	hypothetical protein	A0A2H5BFK5	Salmonella_phage	2.9e-118	100.0
WP_000246977.1\|400878_402315_+	DNA transfer protein	Q76H14	Enterobacteria_phage	7.7e-246	100.0
WP_001029860.1\|402314_404291_+	hypothetical protein	Q76H13	Enterobacteria_phage	0.0e+00	100.0
WP_071533035.1\|404429_404723_+	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_000532177.1\|404743_404992_-	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_000129933.1\|405127_407131_+	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	100.0
WP_000671496.1\|407189_408647_-	glucosyltransferase domain-containing protein	A8CG94	Salmonella_phage	1.3e-240	100.0
WP_000703639.1\|408636_409569_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.5e-176	100.0
WP_000915528.1\|409565_409928_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
418519:418535	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1016268 : 1025000

Dickeya_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|1016268_1017387_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125877.1\|1017383_1019330_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|1019459_1019681_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1020004_1020325_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|1020355_1022632_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|1022823_1023282_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_085983316.1\|1023744_1025000_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_3

1075063 : 1173913

102

Salmonella_phage(42.11%)

terminase,tail,tRNA,protease,lysis,holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1075063_1075867_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1075859_1077182_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1077162_1077867_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572724.1\|1077866_1082333_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925872.1\|1082677_1084519_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1084778_1085327_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1085354_1086002_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1086063_1087254_-	aspartate transaminase	NA	NA	NA	NA
WP_000977713.1\|1087438_1088530_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1089136_1090537_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1090737_1091199_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544849.1\|1091515_1092730_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893207.1\|1092974_1094411_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191399.1\|1094488_1095691_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|1095885_1097178_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1097222_1097471_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1097511_1097751_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_071892913.1\|1097793_1098951_-	recombinase RecT	S4TTE8	Salmonella_phage	7.9e-217	99.7
WP_000017122.1\|1098913_1101841_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.9
WP_014344461.1\|1101967_1102267_-	hypothetical protein	S4TSN6	Salmonella_phage	1.4e-48	83.6
WP_000917562.1\|1102288_1102447_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_010989055.1\|1102439_1102700_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|1102749_1103160_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|1103279_1103519_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|1103484_1103859_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1103943_1104927_+	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|1104929_1105679_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113629.1\|1105689_1106037_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000065108.1\|1106033_1106345_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_010989003.1\|1106422_1106713_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|1107004_1107238_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|1107349_1107571_+	hypothetical protein	NA	NA	NA	NA
WP_000929803.1\|1107653_1108256_+	DUF1367 family protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
WP_001096550.1\|1108464_1109076_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_001617856.1\|1109072_1109219_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1109208_1110006_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|1110072_1110390_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|1110563_1110689_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1110824_1111274_-	hypothetical protein	NA	NA	NA	NA
WP_014344462.1\|1111634_1112321_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_001574216.1\|1112596_1112926_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_077907023.1\|1112909_1113362_+	lysozyme	A0A0M4R365	Salmonella_phage	3.9e-79	97.3
WP_001541990.1\|1113379_1113859_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1114066_1114600_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1114556_1116695_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1116691_1116898_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009207.1\|1116894_1118442_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_010989008.1\|1118365_1120447_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|1120537_1120861_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1120853_1121153_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|1121133_1121700_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|1121696_1122098_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|1122109_1122859_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|1122904_1123303_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1123299_1123629_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_010989010.1\|1123708_1126696_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_000978296.1\|1126692_1127025_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|1127123_1127621_+	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1127737_1128271_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1128360_1129056_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1129065_1129803_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1129700_1130405_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_001541992.1\|1130476_1132924_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	68.0
WP_014344463.1\|1132950_1133826_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
WP_000178854.1\|1133864_1134107_+	hypothetical protein	NA	NA	NA	NA
WP_014344464.1\|1134160_1136599_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000143167.1\|1136598_1137180_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001533476.1\|1137655_1138624_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_000334547.1\|1139271_1139898_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1139966_1140266_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1140250_1140937_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1141207_1141399_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193784.1\|1141825_1144438_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1144645_1145656_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1145821_1146364_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1146360_1147470_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|1147568_1149677_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1149689_1151597_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|1151611_1152865_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1152869_1154510_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1154506_1155070_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1155325_1155493_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1155592_1156111_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156454.1\|1156179_1157940_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1158125_1158578_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1158649_1159702_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1160058_1160568_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1160784_1161390_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1161376_1163530_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1163548_1163995_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1164118_1166173_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1166208_1166667_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1166761_1167424_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1167597_1168011_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1168055_1168373_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1168430_1169642_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859419.1\|1169856_1170405_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1170430_1171210_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000072884.1\|1171258_1171540_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1171536_1171866_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374050.1\|1171952_1172612_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000938191.1\|1173232_1173913_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_4

2069869 : 2077123

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157322.1\|2069869_2071300_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377041.1\|2071373_2072069_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2072160_2072460_-	membrane protein	NA	NA	NA	NA
WP_001080680.1\|2073109_2074306_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_024131109.1\|2074566_2074755_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2074765_2074978_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457662.1\|2075432_2076701_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000394196.1\|2076703_2077123_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_5

2166466 : 2176972

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2166466_2167780_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2167806_2168886_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2168890_2169664_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2169660_2170653_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2170658_2171210_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2171210_2172089_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2172136_2173036_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697839.1\|2173056_2174121_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.2e-103	53.9
WP_000981469.1\|2174497_2175391_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111841.1\|2175568_2176972_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_6

2245280 : 2254451

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195332.1\|2245280_2247314_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2247554_2248013_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197952.1\|2248184_2248715_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2248771_2249239_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2249285_2250005_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2250001_2251687_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240418.1\|2251909_2252641_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2252700_2252808_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2252788_2253520_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2253503_2254451_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_7

2273858 : 2340254

Salmonella_phage(28.57%)

tail,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989296.1\|2273858_2274554_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000553526.1\|2274707_2275592_+	cytidine deaminase	NA	NA	NA	NA
WP_000920081.1\|2275768_2276488_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_000605187.1\|2276484_2276730_+	DUF2542 family protein	NA	NA	NA	NA
WP_001136409.1\|2276934_2278176_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_000956095.1\|2278169_2279405_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_001275101.1\|2279479_2280490_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_000535907.1\|2280505_2282026_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
WP_001036943.1\|2282159_2283158_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_000628631.1\|2283656_2284679_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_001526153.1\|2284828_2285971_-	DUF418 family protein	NA	NA	NA	NA
WP_001139611.1\|2285985_2286654_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
WP_000425488.1\|2286983_2287841_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000876817.1\|2287829_2288219_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000443208.1\|2288223_2289591_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000022915.1\|2289807_2290695_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000023807.1\|2290727_2292050_+	MFS transporter	NA	NA	NA	NA
WP_000488255.1\|2292093_2294085_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
WP_000535000.1\|2294430_2295900_-	lysine-specific permease	NA	NA	NA	NA
WP_000548308.1\|2296089_2296953_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000137960.1\|2297073_2298123_+	YeiH family protein	NA	NA	NA	NA
WP_000873909.1\|2298201_2299059_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	2.2e-22	28.5
WP_000854414.1\|2299123_2300812_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_000091249.1\|2300828_2301767_-	1-phosphofructokinase	NA	NA	NA	NA
WP_000487287.1\|2301766_2302897_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_000551937.1\|2303265_2304447_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_001213882.1\|2304511_2305177_-	membrane protein	NA	NA	NA	NA
WP_001519564.1\|2305178_2305301_-	membrane protein	NA	NA	NA	NA
WP_010989043.1\|2305688_2305943_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001136822.1\|2306266_2306839_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_000169350.1\|2307051_2308038_+	GTP-binding protein	NA	NA	NA	NA
WP_000178095.1\|2308067_2308787_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000241015.1\|2309200_2309773_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
WP_000957746.1\|2310098_2311655_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000561747.1\|2311761_2313567_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000501623.1\|2313576_2314671_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_001137764.1\|2314670_2315696_+	ABC transporter permease	NA	NA	NA	NA
WP_000203622.1\|2315697_2317287_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	8.5e-20	32.5
WP_001094639.1\|2317290_2317635_-	hypothetical protein	NA	NA	NA	NA
WP_000213347.1\|2318025_2319216_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
WP_001234836.1\|2319243_2319939_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_000578121.1\|2320090_2321851_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.9e-100	41.6
WP_000494192.1\|2321975_2322260_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_000033437.1\|2322368_2322989_-	hypothetical protein	NA	NA	NA	NA
WP_000050806.1\|2323016_2324024_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
WP_001135904.1\|2324203_2324431_+	YejL family protein	NA	NA	NA	NA
WP_000256150.1\|2324462_2326223_+	cardiolipin transport protein PbgA	NA	NA	NA	NA
WP_000806401.1\|2326503_2327007_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|2327034_2327325_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000639473.1\|2327672_2329502_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000022213.1\|2329555_2329999_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215679.1\|2330376_2330904_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000554739.1\|2330906_2332148_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|2332740_2333070_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000894639.1\|2333366_2334698_+	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_010989045.1\|2334726_2335095_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_001202279.1\|2335109_2336099_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_001115840.1\|2336427_2338794_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001113462.1\|2338962_2339166_-\|tail	tail protein	NA	NA	NA	NA
WP_000624225.1\|2339462_2340254_-\|tail	tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_8

2679010 : 2783851

111

Salmonella_phage(37.1%)

terminase,integrase,tail,head,tRNA,holin,transposase,lysis,capsid,portal

attL 2703555:2703571|attR 2791755:2791771

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940032.1\|2679010_2679742_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553467.1\|2679860_2680664_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174944.1\|2680808_2681687_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
WP_000985204.1\|2681868_2682912_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2682915_2683734_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2683744_2684758_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111027.1\|2684758_2685745_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2685735_2686374_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982961.1\|2686499_2687777_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2687771_2688911_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2689106_2690360_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883149.1\|2690684_2691875_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2692056_2693601_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA
WP_000100008.1\|2693961_2695293_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2695375_2697520_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2697575_2699036_+	dipeptide permease DtpD	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2699084_2699423_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2699499_2700837_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054236.1\|2700833_2701598_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2701599_2703030_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
2703555:2703571	attL	NA	NA	NA	NA
WP_000970045.1\|2703679_2707567_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
WP_001747289.1\|2707588_2707822_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2707822_2709367_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134566.1\|2709417_2709969_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2709993_2710629_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2710632_2711994_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_001048530.1\|2712004_2712898_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995703.1\|2713013_2713862_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684022.1\|2713900_2714818_-	oxidoreductase	NA	NA	NA	NA
WP_001276365.1\|2714839_2716036_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022463.1\|2716151_2717078_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001196290.1\|2717115_2717376_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_000986043.1\|2717487_2717868_-	holo-ACP synthase	NA	NA	NA	NA
WP_000818972.1\|2717867_2718599_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399380.1\|2718610_2719339_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2719350_2720256_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2720252_2720933_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2721206_2722181_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2722197_2723997_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_010989047.1\|2724401_2725895_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_001542312.1\|2726379_2726517_+	hypothetical protein	NA	NA	NA	NA
WP_015589559.1\|2727229_2727394_-\|transposase	transposase	NA	NA	NA	NA
WP_001738443.1\|2728101_2728314_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2728420_2728648_+	PagK-like protein	NA	NA	NA	NA
WP_000143154.1\|2728744_2729323_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2729312_2730137_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144677.1\|2730133_2732506_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	4.8e-91	65.7
WP_000178853.1\|2732559_2732802_-	hypothetical protein	NA	NA	NA	NA
WP_000514916.1\|2732840_2736203_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000246126.1\|2736264_2736912_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2736809_2737547_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2737553_2738252_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2738261_2738591_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2738593_2741689_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|2741660_2741999_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2741995_2742391_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2742441_2743188_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2743195_2743597_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2743705_2744836_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2744884_2745463_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2745490_2745874_-\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2745884_2746244_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|2746301_2747330_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2747384_2747732_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2747744_2749241_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2749230_2750811_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2750807_2751011_-	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2750994_2752926_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2752897_2753443_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2753729_2754131_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_001533543.1\|2754366_2754819_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984579.1\|2754836_2755289_-	lysozyme	A0A0M4R365	Salmonella_phage	2.0e-78	96.6
WP_001574216.1\|2755272_2755602_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_014344470.1\|2755877_2756564_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	2.0e-130	99.1
WP_000657897.1\|2756778_2756967_-	hypothetical protein	NA	NA	NA	NA
WP_000211409.1\|2757473_2758037_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_001097241.1\|2758309_2758987_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2758983_2759124_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096550.1\|2759120_2759732_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_000929803.1\|2759940_2760543_-	DUF1367 family protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
WP_000807548.1\|2760625_2760847_-	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|2760958_2761192_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_010989003.1\|2761483_2761774_-	hypothetical protein	NA	NA	NA	NA
WP_000065108.1\|2761851_2762163_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_000113629.1\|2762159_2762507_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000800010.1\|2762517_2763267_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000062941.1\|2763269_2764253_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|2764337_2764712_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|2764677_2764917_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|2765036_2765447_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_010989055.1\|2765496_2765757_+	hypothetical protein	NA	NA	NA	NA
WP_000917562.1\|2765749_2765908_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_014344461.1\|2765929_2766229_+	hypothetical protein	S4TSN6	Salmonella_phage	1.4e-48	83.6
WP_000017122.1\|2766355_2769283_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.9
WP_071892913.1\|2769245_2770403_+	recombinase RecT	S4TTE8	Salmonella_phage	7.9e-217	99.7
WP_001237031.1\|2770445_2770685_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001670787.1\|2770725_2771010_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001007939.1\|2770987_2772217_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
WP_000589087.1\|2772714_2773194_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2773190_2774147_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168374.1\|2774146_2774797_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2774828_2775404_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2775400_2775565_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989177.1\|2775828_2777451_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083343.1\|2777435_2778173_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|2778303_2779638_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001526875.1\|2779655_2780555_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188414.1\|2780657_2781245_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|2781306_2781690_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|2782008_2782698_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|2782813_2783851_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
2791755:2791771	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2804984 : 2839594

Cronobacter_phage(68.97%)

terminase,integrase,capsid,tail,plate,head,tRNA,holin,portal

attL 2803437:2803452|attR 2831602:2831617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2803437:2803452	attL	NA	NA	NA	NA
WP_000977528.1\|2804984_2806688_-	hypothetical protein	F1BUJ7	Cronobacter_phage	3.8e-223	81.4
WP_000200792.1\|2806687_2807233_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
WP_000267951.1\|2807204_2807930_-	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
WP_000122989.1\|2807919_2808474_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	4.6e-98	97.2
WP_001001823.1\|2810741_2811329_-	hypothetical protein	F1BUK5	Cronobacter_phage	8.4e-90	82.1
WP_000136921.1\|2811321_2812506_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001002797.1\|2812502_2812832_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811099.1\|2812828_2814796_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.9e-271	70.7
WP_000411498.1\|2814983_2815241_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.1e-20	61.0
WP_000376377.1\|2815387_2815720_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.2e-34	69.1
WP_000175558.1\|2815719_2816061_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154426.1\|2816057_2816354_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_000166745.1\|2816366_2816822_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
WP_000220185.1\|2816818_2817946_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.6e-174	82.9
WP_000606932.1\|2817942_2818647_-	hypothetical protein	F1BUL6	Cronobacter_phage	2.0e-69	59.5
WP_000080872.1\|2818643_2819126_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	4.0e-37	48.7
WP_000491223.1\|2819122_2819575_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
WP_000505908.1\|2819668_2819860_-	hypothetical protein	NA	NA	NA	NA
WP_001177275.1\|2819878_2820577_-\|terminase	terminase endonuclease subunit	F1BUM0	Cronobacter_phage	6.1e-63	52.6
WP_001176504.1\|2820588_2821617_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.7e-133	71.6
WP_031603163.1\|2821651_2822491_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.8e-46	52.0
WP_001151938.1\|2822701_2824486_+	hypothetical protein	F1BUM5	Cronobacter_phage	1.8e-247	69.7
WP_000746493.1\|2824482_2825502_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.0e-135	68.5
WP_001264830.1\|2825555_2825825_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	5.1e-34	78.4
WP_000994502.1\|2825852_2828510_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	4.6e-244	47.5
WP_000681786.1\|2828769_2829339_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-43	46.8
WP_000645096.1\|2829348_2829681_-	hypothetical protein	NA	NA	NA	NA
WP_000661530.1\|2829706_2830045_-	hypothetical protein	NA	NA	NA	NA
WP_000085723.1\|2830153_2830453_+	helix-turn-helix domain-containing protein	Q1JS21	Enterobacteria_phage	3.8e-22	53.2
WP_024136262.1\|2830519_2831512_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	4.7e-109	58.5
WP_010989056.1\|2831675_2831723_+	hypothetical protein	NA	NA	NA	NA
2831602:2831617	attR	NA	NA	NA	NA
WP_000200080.1\|2831822_2832983_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210995.1\|2832943_2833852_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|2833909_2835031_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2835040_2836111_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|2836550_2837069_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|2837061_2838282_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|2838438_2838786_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|2838826_2839594_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_10

2867993 : 2901406

Salmonella_phage(97.56%)

terminase,integrase,tail,plate,head,lysis,capsid,portal

attL 2867832:2867878|attR 2901524:2901570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2867832:2867878	attL	NA	NA	NA	NA
WP_000980498.1\|2867993_2868212_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
WP_001010543.1\|2868280_2869381_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.4e-193	98.1
WP_000980418.1\|2869377_2869863_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	98.5
WP_001282773.1\|2869859_2872667_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	99.7
WP_000763317.1\|2872659_2872779_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_001280967.1\|2872793_2873096_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
WP_001207652.1\|2873150_2873666_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
WP_000046109.1\|2873675_2874848_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
WP_001165559.1\|2874950_2875508_-	serine-type DNA invertase Fin	A0A1S6L009	Salmonella_phage	8.0e-98	97.8
WP_010989058.1\|2875477_2876557_+	hypothetical protein	A0A1B0V7G4	Salmonella_phage	5.4e-183	92.1
WP_001287105.1\|2876563_2876971_+\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	2.2e-60	84.4
WP_010989059.1\|2876974_2877592_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	4.1e-95	84.6
WP_001274647.1\|2877561_2879136_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	2.1e-156	60.7
WP_001086807.1\|2879132_2879738_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
WP_000268333.1\|2879730_2880639_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.7e-159	99.0
WP_000177403.1\|2880625_2880985_-	GPW/gp25 family protein	E5G6N7	Salmonella_phage	8.0e-59	98.3
WP_000993751.1\|2880981_2881560_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.3e-107	98.4
WP_000343947.1\|2881628_2882075_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.9e-65	89.0
WP_001039961.1\|2882067_2882499_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_001648763.1\|2882594_2883023_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
WP_000871617.1\|2883019_2883394_-	hypothetical protein	NA	NA	NA	NA
WP_001069932.1\|2883398_2883908_-	lysozyme	A0A1S6KZY9	Salmonella_phage	3.5e-92	97.6
WP_000171565.1\|2883888_2884104_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868168.1\|2884107_2884311_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.1e-33	98.5
WP_000673534.1\|2884310_2884775_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-84	98.1
WP_000059178.1\|2884868_2885522_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	4.6e-113	98.6
WP_000730755.1\|2885525_2886608_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.6e-190	97.7
WP_000216276.1\|2886624_2887458_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
WP_001098444.1\|2887600_2889367_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.3
WP_001292071.1\|2889366_2890407_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.4e-188	93.0
WP_071892914.1\|2890492_2892244_-	AIPR family protein	NA	NA	NA	NA
WP_014344476.1\|2892457_2893135_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|2893248_2893482_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154433.1\|2893492_2893681_-	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
WP_000301161.1\|2893833_2896263_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.8
WP_000104125.1\|2896253_2897111_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.7e-129	80.4
WP_000785509.1\|2897107_2897335_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
WP_001244234.1\|2897334_2897568_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
WP_000963195.1\|2897635_2897977_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
WP_000166366.1\|2898196_2898655_+	hypothetical protein	NA	NA	NA	NA
WP_000957775.1\|2898602_2898836_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
WP_000460862.1\|2898843_2899353_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	5.1e-83	92.9
WP_000102104.1\|2899388_2899628_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
WP_000052560.1\|2899744_2900377_+	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_001536726.1\|2900380_2901406_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
2901524:2901570	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4033545 : 4081862

Escherichia_phage(33.33%)

transposase,integrase

attL 4043832:4043846|attR 4082976:4082990

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066953.1\|4033545_4034286_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_042344623.1\|4034406_4034589_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|4035731_4036901_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|4037096_4037390_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|4037495_4037771_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|4037770_4038055_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000562172.1\|4038659_4039412_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001022265.1\|4039457_4040423_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000710783.1\|4040455_4040836_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001077068.1\|4040860_4041751_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_000338039.1\|4042722_4043601_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_001271561.1\|4043590_4044478_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
4043832:4043846	attL	NA	NA	NA	NA
WP_000922702.1\|4044488_4045313_+	phosphodiesterase	NA	NA	NA	NA
WP_000950177.1\|4045318_4046392_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000476108.1\|4046384_4047695_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067834.1\|4049614_4050319_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000874189.1\|4051028_4051514_-	hypothetical protein	NA	NA	NA	NA
WP_001267177.1\|4051538_4052024_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000117262.1\|4052010_4052706_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.3e-17	32.2
WP_000729220.1\|4052710_4053841_-	ABC transporter permease	NA	NA	NA	NA
WP_000964653.1\|4053830_4055114_-	ABC transporter permease	NA	NA	NA	NA
WP_000119836.1\|4055116_4056496_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000178050.1\|4056599_4057127_-	iron transporter	NA	NA	NA	NA
WP_000118029.1\|4057167_4059054_-	FTR1 family iron permease	NA	NA	NA	NA
WP_012372823.1\|4059400_4060216_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_000949452.1\|4060398_4060905_-	protein disulfide oxidoreductase	NA	NA	NA	NA
WP_000449408.1\|4060894_4061053_-	DsbA family protein	NA	NA	NA	NA
WP_000428546.1\|4062379_4062973_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|4063085_4064291_-	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_000088605.1\|4064372_4064996_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|4064973_4065660_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|4065667_4066054_-	hypothetical protein	NA	NA	NA	NA
WP_049802299.1\|4066046_4066310_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000412211.1\|4067282_4067942_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|4068142_4068520_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|4068586_4071553_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|4071555_4072116_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|4072241_4072592_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|4072794_4073808_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001334766.1\|4074017_4074848_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_001209508.1\|4074960_4075752_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|4075915_4076263_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|4076256_4077096_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000376623.1\|4077223_4077724_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000983249.1\|4077899_4078685_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
WP_001324342.1\|4078671_4080195_-\|transposase	IS21-like element IS1326 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
WP_000287615.1\|4080317_4081862_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
4082976:4082990	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4523003 : 4543423

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587738.1\|4523003_4523732_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
WP_010989092.1\|4523928_4524219_-	membrane protein	NA	NA	NA	NA
WP_000084331.1\|4524467_4524923_-	hypothetical protein	NA	NA	NA	NA
WP_001526208.1\|4524919_4525525_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368196.1\|4525529_4527275_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_000359500.1\|4527277_4527910_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|4527902_4529018_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|4529008_4529368_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095011.1\|4529531_4531079_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_000703632.1\|4531078_4532008_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_000593182.1\|4532004_4532367_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4532694_4533417_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4533426_4534470_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4534457_4534667_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|4534666_4535620_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|4535619_4537974_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|4538070_4538199_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4538158_4538476_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4538527_4539052_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729852.1\|4539051_4540479_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4540468_4540666_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4540662_4541118_-	hypothetical protein	NA	NA	NA	NA
WP_000777266.1\|4541277_4541592_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270442.1\|4541604_4542210_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	4.2e-60	59.9
WP_001226442.1\|4542212_4542500_-	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4543075_4543423_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016861

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_016860

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection