CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	2 crisprs	csa3	1	2	3	0
NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	1 crisprs	csa3	0	1	1	0
NC_016622	Azospirillum lipoferum 4B, complete genome	2 crisprs	csa3,WYL,cas3,cas8u1,cas7,csb2gr5,cas1,cas2,cas6,DEDDh,DinG	0	22	2	0
NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	0 crisprs	c2c9_V-U4	0	0	19	1
NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	1 crisprs	csa3	0	2	1	0
NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	2 crisprs	cas6,cas2,cas1,csm3gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	0	11	2	0
NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016585_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016585_1

176637-176732

Orphan

Consensus_repeat	Method
CCAGCGTGGCGCCGGAGGCCACCGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016585_1

>merge|NC_016585|1|176637-176732|CRISPRCasFinder
CCAGCGTGGCGCCGGAGGCCACCGTCAGCGTGTTGGAGGAGCCGCTGGCGAAGATGCTGCCGGTGCCGCCCAGCGTGGCGCCGGAGGCCACCGTCA

>NC_016585|1|1|176637-176732|CRISPRCasFinder
CCAGCGTGGCGCCGGAGGCCACCGTCA	GCGTGTTGGAGGAGCCGCTGGCGAAGATGCTGCCGGTGCCGC
CCAGCGTGGCGCCGGAGGCCACCGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016585.1\|WP_044551328.1\|167963_168356_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_044551732.1\|182150_182324_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290455
NC_016585.1\|WP_044551334.1\|184233_185010_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_016585.1\|WP_014187931.1\|166723_167092_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_044551337.1\|185090_187094_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_016585.1\|WP_014187928.1\|162244_162808_-\|DUF1788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378040
NC_016585.1\|WP_014187927.1\|158801_162248_-\|BREX-system-P-loop-protein-BrxC	unknown	unknown	gnl\|CDD\|380283
NC_016585.1\|WP_081505963.1\|187979_188345_-\|transposase	unknown	unknown	gnl\|CDD\|376564
NC_016585.1\|WP_085938476.1\|169744_170976_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_016585.1\|WP_162488270.1\|191627_193208_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_016585.1\|WP_085938476.1\|182408_183640_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_016585.1\|WP_014187940.1\|190056_190719_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368907
NC_016585.1\|WP_081505964.1\|190747_191620_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NC_016585.1\|WP_162488206.1\|167199_167859_-\|DUF2399-domain-containing-protein	unknown	unknown	gnl\|CDD\|370769
NC_016585.1\|WP_014187925.1\|153528_155271_-\|AIPR-family-protein	unknown	unknown	gnl\|CDD\|378452
NC_016585.1\|WP_162488205.1\|164268_166620_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NC_016585.1\|WP_014187926.1\|155267_158756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380294
NC_016585.1\|WP_044551321.1\|162809_163607_-\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_167331744.1\|187159_188065_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NC_016585.1\|WP_014187939.1\|189038_189212_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016585.1\|WP_044551732.1\|182150_182324_+\|hypothetical-protein	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	8.01397e-05
NC_016585.1\|WP_044551334.1\|184233_185010_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.55105e-46
NC_016585.1\|WP_014187926.1\|155267_158756_-\|hypothetical-protein	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	3.42833e-64
NC_016585.1\|WP_081505963.1\|187979_188345_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.16124e-08
NC_016585.1\|WP_044551337.1\|185090_187094_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.4864e-40
NC_016585.1\|WP_014187927.1\|158801_162248_-\|BREX-system-P-loop-protein-BrxC	gnl\|CDD\|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
NC_016585.1\|WP_014187928.1\|162244_162808_-\|DUF1788-domain-containing-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	0.000245882
NC_016585.1\|WP_162488270.1\|191627_193208_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.82358e-33
NC_016585.1\|WP_085938476.1\|182408_183640_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.2875e-121
NC_016585.1\|WP_081505964.1\|190747_191620_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.39354e-43
NC_016585.1\|WP_162488206.1\|167199_167859_-\|DUF2399-domain-containing-protein	gnl\|CDD\|370769	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220). This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the C-terminus.	1.34745e-12
NC_016585.1\|WP_014187925.1\|153528_155271_-\|AIPR-family-protein	gnl\|CDD\|378452	pfam10592, AIPR, AIPR protein. This family of proteins was identified in as an abortive infection phage resistance protein often found in restriction modification system operons.	4.82552e-40
NC_016585.1\|WP_162488205.1\|164268_166620_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	6.19683e-48
NC_016585.1\|WP_014187940.1\|190056_190719_+\|hypothetical-protein	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	0.00725346
NC_016585.1\|WP_085938476.1\|169744_170976_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.2875e-121
NC_016585.1\|WP_167331744.1\|187159_188065_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.84217e-24

>NC_016585.1|WP_085938476.1|169744_170976_-|IS3-family-transposase
MTKQASPKYAPEVRERAVRMVFEHEGEHASQWAAISSIAAKIGCTPETLRGWVRQAERDQGKRPGPTTDEQERIKALEREVRELRQANEILRKASAYFGPGGARPPVPEMIAFIDAHRAVHGVEPICRVLPIAPSTYYAHAARQADPSKAPARSRSDAVLREAIRRVWDANFQVYGVRKVWRQLRREGIDVARCTVARLMKQMGLKGAMRGKVVRTTISDRAASCPADRVNRQFQAPRPNALWLADFTYVSTWQGFVYVAFVIDAFARRIVGWRVSSTAHAGFVLDALEQALHDRRPAKGSGLIHHSDRGSQYVAIRYTERLTEAGVEPSVGSVGDSYDNALAETINGLYKTEVIRRRGPWRTLEAVEFATLEWVDWFNHRRLLEPIGNTPPAEAEARYYAQTEDVAMAA
>NC_016585.1|WP_044551328.1|167963_168356_+|hypothetical-protein
MLSGFLLLDLPRRDPLLLTGGDRSGAGFQLLRARLQAGLSVDVAAQVFRHGRAAGLGPELTVLLGIGHLGFRQHPADLLRDGAGYAVCVQRRVGLHFRAVQRHRPQLDQPGLAAQLLAAVTDKRDYGSGC
>NC_016585.1|WP_162488206.1|167199_167859_-|DUF2399-domain-containing-protein
MRMLRSVAQADAEDAEGAPSSGLAPTTDEGLSDDELLARFGLTRFPAPVFLSGPVTVRFGNAPEDGLLPGTAPPFVAVQREWLDGLSWDGEGPFSILTVENLTSFHRQVREARQADVCVVYTGGFPSLTVLRALRHLLRAAPTPPRLFHWGDVDAGGARIAGHLEDSLGAAVVPHLMDASTVRRFGRAGRTADLTALSRRPGAAGIIARTIVETGLLLG
>NC_016585.1|WP_014187931.1|166723_167092_+|hypothetical-protein
MTDTIDTECMILIATLKRDVESLKKVSDAAADAMLAVYRTAVPLAKHEESLEAMLEGLDQALDKSLKLTKALRSLSCRMENDEISGHELAEILARKHYLDRRGYTSWTFAPLVPERDPAPGE
>NC_016585.1|WP_162488205.1|164268_166620_+|tyrosine-type-recombinase/integrase
MSLGVHLYRRGSVYWWRRILPVCGAAVGDEGAPENSSKKIAGREIRLSLRTNMPGLARQRGRRLSVVVDAVLALLGEVMQAGTIDTSALRALLQPILLGELERAEVARALGGERGPEEIARRVQAELDAVATIEDAVRHNRLDAARAVLERAVTVGLPVPAAETAEHSYLARLVLRGLPRIHRINAEREQNHYDDLEDVLPPLPASSMAVGMPAGAPSGTAVPGVEGRPATVVAPSAPALVPTVMPAQPAVQSSLVAAPVASIDPVEPNTSPVPNRKEVEAHPHSQAAQPAVAAAASVLVTTSSAAASAGSTGPAASVVDRTPEATTVEASPQPQKTSPAKDWTIQQAMGEWVRRRQRDTNPHKTAALCKEEERNYRVAAELFTSLIGDRRAVEVTEEDLLRFRGELHRVPNLFGRGTYRNMTGAEAVARADAVTASQQAAVMARAEDGQLDRDNLAHEMRDAEVPRLSMKTVNKHLDKIKGLLRWLRTTIKVAIDRDLLDLKIRYDQKDIGRAANADREAFSSAEMRKLFASPCWTGCAGVDYRHRPGSNTVKDAKFWIPLLAALEGVRLGEAAQLLTTDIQLRCFDQEDFTDWDVDLDDPSGPWPRLRRFSPKDADGVPTVGIWCIDVIPEDGKSVKTPSSKRIIPIHPLLLELGFLDYVDAQKRAGKRDLFPGLRPEKATCAGENLGEWFSRYLEYIGMKRERLSFHSFRHSFDTHLLNREVPDVRVSELMGHAQHGQTRNRYYKGARLAKLTEAIASINYRLHTAMVDGQLCLVLPPGA
>NC_016585.1|WP_044551321.1|162809_163607_-|hypothetical-protein
MAAVSFTSFFPVGRPFKSGVGLRPHAGGTHTSRTIMLAELSTLLSIEPQPSDRAEYAELIIQDNRLGKQTAATRRLSYTRLGELYALDPTVPLFRILRRLWRLDETSRPLLALLAGLARDPLLLATAPAVLQLRPGEDLQRGAVRSALLNTSGDRLSAAVLDKVLRNTASSWTQSGHLIGRTFKRRQQVIATPITVAFALWIACQAGFSDTEAFQSGWVNTLDLEQPHALRLAGEARRLRLLDMDIAEQVVTLDFARLDGTFWER
>NC_016585.1|WP_014187928.1|162244_162808_-|DUF1788-domain-containing-protein
MARIEDLAKVYERHIKLPWQRTVAGAQRIVMLVYEKEAERALRARLKNFEIATAEAGKTWRTVDITDSFAAWMAGEEYRDAYFEMPEDLQLKLDAEFAGFVADRIRLALTDPAVDEDTVVAVIGAGSLFGFTRLSRVLTLVEPDIRGRLLVFFPGQYEDNTYRLLDARDGWNYLAVPITMHGGGAQS
>NC_016585.1|WP_014187927.1|158801_162248_-|BREX-system-P-loop-protein-BrxC
MKLKDVLLRDPGQTRLANNGQARLVDDRDTEKAMLELREELKSFVCEGQYADGMIKILRAFLNGGTSLPGAWVSGFYGSGKSHLLKMLCHLWQNTAFPDGATARALVPSLPDEVKELLKELDTQGKRAGGLLAAAGAMPNGGTDAVRLTILSVILRAVGLPEQYAPARFCLWLEEQGKLDHIRDAVKAAGKDFNAELNSLYVSPLIANALMSAIPDLATGPGQVRLLLREQFPQKLTDITTTEFLDAARAALRLRGHDGQIPLTLLVLDEVQQYIGTVHDRSVLVSEVAEAVSKQMNGRVMIVGAGQSALSSAPHLQRLMDRFTVRVPLSDIDVETVTRKVLLQKKPAALGNVRSTLDTHAGEVSRQLSGTRIQEGPEDRAVIVDDYPILPVRRRFFEECFRQLDAGGTQSQLRSQLRIVHDALHKRADRNLGTLIPADELYEALAPELVNTGILLREINERILQVRKDVGDLAARICGVVFLINRLKREAGMDTGIRSTKEHIADLLVDDLTADNGRLRADVDEMLKRLVDRGDLMPVDEEYRLQTREGTEWDREFRAQQNRAAADTSTVYFRREQLIGAEFESAIKGVQLLQGDAKELRKLAIHRGDTPPPAETSVIQVWMRDGWTSTEKQAQDAARAAGNESPTIFVFIPRAHPDALRDGIRDMIAAKATLDAKGIPSTKEGEEAKLSMDSRLSIATKAVQTLVKEIVGQTKVYQGGGNEVMRLTVADQIEAAAEDSLVRLFPRFKEADSGHWETVFKRAREGADNPFQVVGHAGALETHPVCQQVLTTIGAGRSGSDIRKELQAPPLGWPKEAIDAALVALHSAGVVTAVANGEVIAPKHLDHNRIPKADFRKEGFTLSATQKLALRKLYQLLGVPNAAEQLAANAPEFLSKLKGLGAEAGGAAPLPASPDTKDIADIEHLAGNERLNAIHAKAADFTARIEAWTALKELKDKRLPAWTVLDRLSGHARGLDGAKDPLEQVETIRDKRLLLDGTDHVTPVRAALAALLREEVGTLHAAHLKAHRAAEAELAGNVLWGRLAADQQASILADVGLTAPADPNLSSDETLLQHLDRKPLPTARAEIDAVAGRVQRALEKAAKLLEPKVRMVMLERTTLKTPEEVEAWLAKARATLTDALGDGPVMVS
>NC_016585.1|WP_014187926.1|155267_158756_-|hypothetical-protein
MASLARDLRRNLETRVREARVLAEVGARKALERLGVHLSASPGYLTDQEKKLRAKLRAHAKRLGDERRSDGSQDIKRLVPEVAYEHWHRMLFARFLAESDLLIDDGLALTLADVQELAREQGKDWLELAAGYAQRMLPEIFRSEDPALALALPPETRSALEDRLKALPPAVFRADDSLGWVYQFWQADEKERVNKSGGPIGADELPAVTQLFTEDYMVLFLLHNTLGAWWAGKILSANPALAAGAADEAELRAACALPGVDWTYLRFVRETREDGGEGDWRPAAGTFPGWPGDVKDITFLDPCMGSGHFLVFTLPILAALRMAEEGLNRKDAVLAVLRDNLHGLEIDFRCTQIAAFNLAFAAWRLIGEYVQLPPLHLACSGLSIGMAKQDFLKLADKVARAADPQARTDLLGAEATLLNAQVDSRIRTGLSRLYDLFEKAPVLGSLIEPRRAGGDLFAADWDLLEPILTQALADGSDEVAEMAVAAQGLAKAAELLANRYVLVATNVPYLGRGKQSDSLRNWIDEHYPRSKNDIATVFMERLLEIIVPNGTFSTVAPDNWLFLPAYRDLRKTSLIKNGLDICALLGPAAFQDMNWWAARTGLFAMSRRSNIVTSHINLIDAGENKSISVKEAILSGQEGGGFTVLPSSTALVGKDSRLDLQGGHKGNIIGHFARASQGLKTGDDDRLVRSFWETPALTENWHPMQSTSQEQKNYGGQSNVIWWADGGSSVARRQGTKAWGNIGVSIGQMRLLPATIYGGEIFDSNVCVLIPNNREHVSALLCFAHSGELTKRVRKIEPGSKVNNGTFELIPFDLAHWQRVAAEKYPDGLPKPHSDDPTQWLFNGHPVGSDDPLQVAVARLLGYRWPRQTGSSFMDCPAITEPDGLEPHADSDGIVCLSPVKGEPAAAERLSALLASAYGADWTPQRLTALLSAAGDGKARDLDAYLRNHFFKRHVELFQNRPFIWHVWDGRQDDGFHALVNYHKLAAPGGEGRRTLEKLVYTYLREWIDRCRTEVKAGADGAEGRLAAAEHLRGRLEAILEGEPPYDIFVRWKPLRRQAIGWEPDVNDGVRMNIRPFLTARPLDAKSATACILRVTPRIKWDKDRGKEPTRPKDDYPWFWNWDQKTANFAGTGDEPDGQRWNDLHYSNDAKRAARERKGGEA
>NC_016585.1|WP_014187925.1|153528_155271_-|AIPR-family-protein
MKAAVELVDQRVGETVEALRDRLAGIIGITPTDTGRYLDVDERRLRSAALTVLTLKLYCGLDDADALDAVVDGKDDYGVDAIVVSSVTGTRFKLTFIQSKLHDRLDGACNYEQGAVTEMISALETLLDPDAEFAGNSRLTRQVDHFRKLLREGRIPDVTVLMASNGRTWVDAVETRIKDAVRRKKLPSKWIHFGPTEMHRLWHPTEPVNDTIKLQGKYLEEEIGGHRVIIGKVAVQEIARLVKEYDIRLVGRNVRYFLGAEKDSVNSEIEKSLQTNDDCGNFYFYNNGLTITCDRVDYHQGAHESPILQADNIQIVNGGQTSLIIGRVLGDETPAPGACVLTRIYELPENKELVERITWATNNQNPVTLSDLRANDEVQILLEKSIEELGYRYRRKRLDRPIAPKEFTSLDVARSVYAVWRRKIIDVPNESALFREHYDNVFTGSLNGAQAILACLIRQQVERLYIKESFPERHTEDRLLRENKRRRDTFFKAAGMLLGKWVIDNVCSRDLSQLDHRKFLHAVDHLEKGAESFLLTEFSRLKDTYKDPEENPWRAFPNLVNEAQDTPEKRSDAREAGQAV
>NC_016585.1|WP_044551732.1|182150_182324_+|hypothetical-protein
MPDKVNADRRHHISRPKRKVTNWAEYDASLRRRGSLTVWVSDEAIAHWKAAPRSTPG
>NC_016585.1|WP_085938476.1|182408_183640_+|IS3-family-transposase
MTKQASPKYAPEVRERAVRMVFEHEGEHASQWAAISSIAAKIGCTPETLRGWVRQAERDQGKRPGPTTDEQERIKALEREVRELRQANEILRKASAYFGPGGARPPVPEMIAFIDAHRAVHGVEPICRVLPIAPSTYYAHAARQADPSKAPARSRSDAVLREAIRRVWDANFQVYGVRKVWRQLRREGIDVARCTVARLMKQMGLKGAMRGKVVRTTISDRAASCPADRVNRQFQAPRPNALWLADFTYVSTWQGFVYVAFVIDAFARRIVGWRVSSTAHAGFVLDALEQALHDRRPAKGSGLIHHSDRGSQYVAIRYTERLTEAGVEPSVGSVGDSYDNALAETINGLYKTEVIRRRGPWRTLEAVEFATLEWVDWFNHRRLLEPIGNTPPAEAEARYYAQTEDVAMAA
>NC_016585.1|WP_044551334.1|184233_185010_+|response-regulator-transcription-factor
MLEPYVSGHHERSIVIVEDDPDLQALLVQSLALQGFRVEAVGSALELYRLLGQRKVDVVIVDLGLPDLDGMEIARFLRQQTAIGIIAITANTAPDTRLRFFENGADLFFAKPIDCRELAVAARGLIQRLRATSVPAHPEAAVTVIPAPAPVPVPDSQGPHWLIDNSGWTISAPGGQPMHLSAKEMRLVTILCRSPGEPVIREVLHDALGYANNLDGDRALEALVRRLRSKLKLVGDDTTPIQTVHGVGYLFSAPVVIR
>NC_016585.1|WP_044551337.1|185090_187094_+|sensor-histidine-kinase
MALLLLAGMVSARAEEPGYRQPPIDLVAAQTPLSISGHLEAMRDPTGQMTLADALSATFLPIPLTLGAGYTSDAVWVRFRLRQPGPDAGHWILDLLPPIIDRIDLYIATTDKPHGPEDFQRQSVGSMVPVPEHRVANSNLLVSFNLPPGAVRDVYARVTSATVVSFRGAIFDDRSLTATVSNHSLFHGLIYGSFALVFIFNVLWFIWLRERLNLYYAGYVLSLLINHMAISNTLASLMPETFAPTSKLWMSISNATSLTCGALFVVTFLRLREKAPWGRATILTLGALCPLTVIPVLFGDYRSGATAGQFIGLALIIADTSFSIKLALRGDILARRFLIAFAPALCGGGVSIMRALGLIPNTWWTEQFYFIASLLHIVLMNISMMTRMRDAENARREAQATALAASHAAEERALRIIDEQTRELVSAKREVEAALAAERQAAKDQIQFIDMIGHEYRTPMSVIRAGIDVMELSAAVPGPSQTTLLDRMRRSADRLVELIEVGLQRDRFDQPSLAVDLRPLDLARLARDVVMELPPDGPDVLVHAPEPVPVHADLLLLRTVVINLLDNAQKYGGVEKPIEITVGIEDSIAIFRITDRGPGIPPSVIPHIFDKYYRAPRARTVVGIGLGLYLAHKIAILHKGKLELESGDPGQCMFRLCLPVFANPVEG
>NC_016585.1|WP_167331744.1|187159_188065_-|IS110-family-transposase
MRTKTDALDALGLARLGQQKRPLPATLPDQATEQLRELVRHRDRLVQDCGDRVRQLHRLLDLPFPEFKHHVALLDTALALTILKAFPTATDVAAAMPRRLAKLRNGPRHLVGDALARQLIAAAKQTVAAQSGDVYRVRNRHACEDLALWRTRLLAIDAMIETLLDDHQVGRLLTSIEGIGTTTAARLVAELDDPARFRSPDALASYIGLVPALKHSGKQTPKRAGLSPIGKAALRRALWMPTLHAVQASPWLRAFYDGLRTRGKPGKVALIAAMRKLMVAVWTVAKQRRAWSPSPPQETTA
>NC_016585.1|WP_081505963.1|187979_188345_-|transposase
MTFVGIDIDAEVHAAAAVNDQGSTVCKPFRFTADQAGHTALFAELERLALIQLVVLEATGHYWKKPRRRAGRPRPTGGRPPPAAVRPLPAGSADAHQDRRTRRPGARPPRPAEAATAGNLA
>NC_016585.1|WP_014187939.1|189038_189212_-|hypothetical-protein
MPLILLLILAIVIAQIGFWDTLGALLGGVAMIVLLILLLGALAVLGGRYLMSRARGG
>NC_016585.1|WP_014187940.1|190056_190719_+|hypothetical-protein
MTVPAVLRDVAQFGAYAAGRGRHAGLLVAVLLLAGCPANTVGPGWGGPDLSAANPKARPASPPVPKQKPVRKSPDAASLAPTLPLPQPGPPVTNGDVAAAGMDANTAATQLAAVGQTPTPPATANADPDSLVGLDEVQTLNLLGSPVAREEAPPAKIWRYSKGDCTLKVFFFMDMTSSQDFRALSYDMKSSQNVPDADHRCFAQLLAHADAGRPVRAGVQ
>NC_016585.1|WP_081505964.1|190747_191620_+|response-regulator
MTEPTIGRIALVDDDDLFRESLSLNLGDEGYEVITFDRGEPALDFFAGGGSVDIVLLDWRMPKLDGIDVLRQMRARGIATPVIFLTVLSDQIYEEAALAGGALDFVEKSRSLSILLKRMRLILDGTKGDAVKGADEAEAGGAATMHRLGELELRLDNSRAFWKGKRIDLTLTEFNIVKLMSTRPEEDVSYREIYDLVHGKGFVAGYGPSGYRANVRAFIKRIRQKFRSVDASFACIENYPGFGYRWGKGENPAGQGGDEDGVDNAPGTGTRNGQRGGMSEDMLIDGAAAE
>NC_016585.1|WP_162488270.1|191627_193208_+|HAMP-domain-containing-histidine-kinase
MRAPRQASARLLWLWRSMASRLVLLTVVFVAVPVLLYDQFQRADEASQQLLLKSAQRQGELIARALEPELLGVDRTALPSLSSALARYGDDRTRLKLLVRPRVAATGTAAVRTGPEPFFYVAAAPSLSTTDIDAERRLLLEQGVLDRLGSSCAGNSTLAMRVPHAEGGEEVLSSITPIKTSFGCWALVTSHATEAYISSSIGRPYWSTPAVQAAAAIYLAMAALVLAVLAGIWRNLNRFGDLARRIVGGEDTPDHQDRSASFAARNTVPELAGVAEDFDRLVSTLRDSAQSLRRAAEDNAHAFKTPIAVIRQSVEPLRRALPAENARSQRALTMIEKSLDKLDGLVSFARRMDEAAADLLAPARRRVDLSSLVERMAGGYTGLLAEQRLHMRSRIDAGLVVRASEETLETIVENLVENAVSFSPADSAVSVRLTRNGRWAELVVDDEGPGVDPANLERIFERYFSHREPGRGMPEDESAAHLAGAAHFGIGLWIVRRNIEAFGGRVSAENRPTGGLRMTVMLPLAA

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Crispr_ID: NC_016585_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016585_2

436334-436430

Orphan

Consensus_repeat	Method
TCCAAAGTGTTCACGCGTGAACACTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016585_2

>merge|NC_016585|2|436334-436430|CRISPRCasFinder
TCCAAAGTGTTCACGCGTGAACACTTTGACGGCGACCGCCCCCCCAAGCCGTAAGGCGGTTTCAGCCGCTCCAAAGTGTTCACGCGTGAACACTTTG

>NC_016585|2|2|436334-436430|CRISPRCasFinder
TCCAAAGTGTTCACGCGTGAACACTTTG	ACGGCGACCGCCCCCCCAAGCCGTAAGGCGGTTTCAGCCGC
TCCAAAGTGTTCACGCGTGAACACTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016585.1\|WP_014188153.1\|429348_430455_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_016585.1\|WP_014188157.1\|433306_433561_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_044551432.1\|431805_432024_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NC_016585.1\|WP_014188171.1\|444501_444831_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188161.1\|435332_436124_+\|phage-site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|184255
NC_016585.1\|WP_014188165.1\|437806_439891_+\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|368649
NC_016585.1\|WP_014188156.1\|432435_433203_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188168.1\|442582_443104_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188163.1\|436456_437203_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188160.1\|434752_435259_+\|host-nuclease-inhibitor-Gam-family-protein	unknown	unknown	gnl\|CDD\|377819
NC_016585.1\|WP_014188155.1\|432149_432425_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188154.1\|430976_431780_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378235
NC_016585.1\|WP_048816526.1\|440120_441731_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NC_016585.1\|WP_014188170.1\|443472_444498_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NC_016585.1\|WP_014188169.1\|443100_443460_+\|head-decoration-protein	unknown	unknown	gnl\|CDD\|376964
NC_016585.1\|WP_014188166.1\|439887_440121_+\|gpW-family-protein	unknown	unknown	gnl\|CDD\|376942
NC_016585.1\|WP_052315461.1\|441746_442586_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132933
NC_016585.1\|WP_014188164.1\|437292_437823_+\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|369382
NC_016585.1\|WP_014188158.1\|433573_433756_+\|hypothetical-protein	unknown	unknown	unknown
NC_016585.1\|WP_014188159.1\|433752_434751_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195

Protein	Function_ID	Function_description	E-value
NC_016585.1\|WP_014188153.1\|429348_430455_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.36445e-69
NC_016585.1\|WP_014188166.1\|439887_440121_+\|gpW-family-protein	gnl\|CDD\|376942	pfam02831, gpW, gpW. gpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking gpW contain DNA-filled heads, and active tails, but no infectious virions. gpW is required for the addition of gpFII to the head, which is, in turn, required for the attachment of tails. Since gpFII and tails are known to be attached at the connector, gpW is also likely to assemble at this site. The addition of gpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that gpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in gpW (its calculated pI is 10.8) is consistent with a role in DNA interaction.	1.1055e-24
NC_016585.1\|WP_044551432.1\|431805_432024_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	8.75808e-13
NC_016585.1\|WP_014188159.1\|433752_434751_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.6498e-59
NC_016585.1\|WP_014188165.1\|437806_439891_+\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|368649	pfam05876, Terminase_GpA, Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.	6.43817e-143
NC_016585.1\|WP_048816526.1\|440120_441731_+\|phage-portal-protein	gnl\|CDD\|377468	pfam05136, Phage_portal_2, Phage portal protein, lambda family. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage capsid and the tail proteins.	4.47597e-115
NC_016585.1\|WP_014188161.1\|435332_436124_+\|phage-site-specific-DNA-methyltransferase	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	1.37812e-33
NC_016585.1\|WP_014188170.1\|443472_444498_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.03882e-76
NC_016585.1\|WP_014188160.1\|434752_435259_+\|host-nuclease-inhibitor-Gam-family-protein	gnl\|CDD\|377819	pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This family consists of bacterial and phage Gam proteins. The gam gene of bacteriophage Mu encodes a protein which protects linear double stranded DNA from exonuclease degradation in vitro and in vivo.	2.17902e-31
NC_016585.1\|WP_014188154.1\|430976_431780_+\|hypothetical-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	9.78494e-05
NC_016585.1\|WP_014188169.1\|443100_443460_+\|head-decoration-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	9.09654e-15
NC_016585.1\|WP_014188164.1\|437292_437823_+\|terminase-small-subunit	gnl\|CDD\|369382	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA.	6.91526e-18
NC_016585.1\|WP_052315461.1\|441746_442586_+\|S49-family-peptidase	gnl\|CDD\|132933	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	4.97799e-80

>NC_016585.1|WP_014188161.1|435332_436124_+|phage-site-specific-DNA-methyltransferase
MTSHSVTIGAATLMLGDCIERMRELPDSSVSLVLTDVPYSSGATREAGRTAYGKTMTRSTKGGGDRWFGSDSLSTRGFLHLLRSCAMEWQRVLKPGGHVLAFIDWRMSDHLADAIDGGEAALFLNGHAADAMESADLKRVGLLVWDKTYFGMGTHFRHQHELIHHFTKGKGTEPLRRNVANVLRHAPVRLGAHPTEKPVGLLAELIGTVCPPGETVLDPFFGSASTGHAALTTGRRFIGIERDRRYFEAGWQRLANLAEEMAA
>NC_016585.1|WP_014188160.1|434752_435259_+|host-nuclease-inhibitor-Gam-family-protein
MGETVAAPVRRVRTQDQAAAVVGRIGAAQVQLSRLKASLDVAVAQANLAYETAAAPLRTAIAADTELLRGYFDANRASLLSGTKKSVALSTGTMGVKKTTAKLVVADADTLLTLLEEDRKLRRFIRTKSEVDRAALLAEPKVAVTIPGVSIEGGDDAFFVKPLTVSAA
>NC_016585.1|WP_014188159.1|433752_434751_+|tyrosine-type-recombinase/integrase
MSLPVLPGDPAGQDVSDARHAPALRLDRIQEHLLDAFYAGRSANTVRAYRRDHEDFRTFVARQDGLAAFAATAEQAVRMLLAVEHGQANALALGYRNDMVRRGLQPATVNRRLAALRSVVRLGNTLGLVSWALDIENVDSVTYRDTRGPGRDGVRAMVAQAKERTDAKGLRDTAIVRLLHDVALRRGEVVSLDLEHYESRRGTVAVLGKGRTQRERVTLPAATRTALEAWIAVRGKAAGPLFHRLDAAGRGTGRLTGAAVYQVIRELGAGVGIATRPHGLRHSAITAALDASNGNIRAVQRFSRHRDVRVLQTYDDNRADLAGQMAALIAED
>NC_016585.1|WP_014188158.1|433573_433756_+|hypothetical-protein
MDELIREAVAAGAGLTHDNDPAAVCPSDGAVEFFRQQVAATLRELPEDMTVAELRDALDG
>NC_016585.1|WP_014188157.1|433306_433561_+|hypothetical-protein
MRTEWDGGLCLQLGPVDRHFAVRIIYQGGPFRADIEAIEIRTAQGWIRAPWLIELVEDCAPLFDMLRDHAAGRLADARAVARLP
>NC_016585.1|WP_014188156.1|432435_433203_+|hypothetical-protein
MAIAFARCDTRRRLDLEILVTWALRDQQADRVQSGLFDIEAAANDHGWEPQGVSGDGVAELLRRHETGDRVDGGGPVRGIAVTVHPDAEAVANAVGWLDPWQRRLVRFHGRSGTRPDWLPLVPPLVAVKRPSEARGRYRHVTAERWEFVPTRSELAKRYLLRGQSLFDARGQRRIVEEERGFHFRTFGDGRRQVQVKWCPLEPAHSDAEIVEANTDYAGWHAGMTALLERIGGWGLHDHVLTGFTAPAAPWEYYP
>NC_016585.1|WP_014188155.1|432149_432425_+|hypothetical-protein
MSKSASLMPVFLAYQQLAGCAECETADRLRGKLEQALAAGEVVSADDLFAKARYLQDCGRIDPGLIPMEALDTLVAGVARLLGPGMSQAAA
>NC_016585.1|WP_044551432.1|431805_432024_+|helix-turn-helix-domain-containing-protein
MKHPPLAKRVRRSTGLSQTAFAERFGIPLRTLQDWEQGRREPDAAVESYLRVIEKESGMGAHALAAERLATK
>NC_016585.1|WP_014188154.1|430976_431780_+|hypothetical-protein
METMSDNGQALPALSTTDIDITINHEPRIRDLRLAEALGMADRHAIRRLIERHMDALGRFGEVISDADRKFGRGRPSMSFYLTKRQALYITAKSDTERAALVTIQMVELFDAVTGGAVHSALAPALTRADLDAIDRRARRIGQEEQQRVRSALTDRALDRLRRGERIDIASLSADRPHEPAALPPPPARTREESMDLALAHLRALPPELRQEGFRLMHAIKAHSDALTALKAATEAINSPLDTVAEILERETTLIRQTIAAQAGRVG
>NC_016585.1|WP_014188153.1|429348_430455_-|DNA-cytosine-methyltransferase
MDQTTTSTEGTSSDSIAVVDLFCGAGGLAYGLKQAGLHVAAGVDLDPSCRFPLETNTGATFVCRDVSAVTADDVIGWFGEASIRVLAGCAPCQPFSTYSQSRKSEDNRWTLLREFQRLAVAIRPEIVTMENVPGLANQSIWKEFVAALEAEGYKVTWREVLCTEFGVPQNRRRLVLLASQLGKIELAGPDTKDLRTVKQVIGELPAITAGGTHPDDRLHTASSLSPINLRRIRASKPGGTWRDWPKSLRAKCHVRKTGKTYPAVYGRMEWNKPAPTMTTQCYGFGNGRFGHPEQDRAISLREAALLQSFPPDYQFLDADDEVTFNRLGTLIGNAVPPKLGEAIGHSIRTHLSQVRDGLPPPQGQLSLF
>NC_016585.1|WP_014188163.1|436456_437203_+|hypothetical-protein
MAYARIRASAQQVKAAIRQYGDQLTRYALPMALTRTAQDAKLAVQRALPEAFDRPTPYTVNATFVRPASKADPVAWVGFKDDWGKGTPAARYLLPNVEGGPRRDKRMERQLRAAGLLPAGMFAVPGEEASLDAYGNMRRSEVVRILSQTRAFGEQGYSANRSDSARSRKKRRRNGYFAALPGNAGGLPPGIYRRDGADARPVVIFVRAPSYRPRFRFHDIVERAVRATIGRRLEEAVRTVNARFAARR
>NC_016585.1|WP_014188164.1|437292_437823_+|terminase-small-subunit
MSKPGQRVNRAELADLFGVSLPTVDAWVRDGCPFAEKGAKGREWAFATADVHRWLVDRAVADVAAGYEGEIGVITADEAKRRKAVADAVVAEIKADEALNEVVNRHEAAADVAGFCIGLRTGLSNAVAKIAGRAAAMTGAPEIQAMAETEINRAFDAARDELVKSWGAAVGDEPGA
>NC_016585.1|WP_014188165.1|437806_439891_+|phage-terminase-large-subunit-family-protein
MNRGHEAAARVSAHRHGDYRTGRGELRRALLALFDGSLKFQERMSGSVWAERYGWIPKGTGAEHGKVTLYGYQRGLLDAMCDPAVPLLTVLKAARVGYTRCATLAVGYHLHQDPTLCAIAQPTVPDAEDFGSGEIAPMLRDTPVLKPLMRPVKKGEKQDNAAFYQLSNGASVRVVGAASDDAFRRYSARFLFADEIDGDGWTPGAKTQGDKLKLFWTRGETFWNRSMVRGSTPLLYETSRVWKLWLASDQRRYFVPCPQCSDAAGQLDGWQYLDWGGPDVPHGLKWSLDAEGALDKVWYVGTCGCIIEERHKAWMDANGEWRPTAKAKVPGHVGMHLWTGMSLNPNAAWTVIVQEWLEAQADPASLVQPFMNLRLGRPYRATYGQEVKSSSFIDRMEPYPAEVPAGVEFITVGVDVQSGTVNPRLEASVYGWGRGLEVWLIGHFVLAGDPAKGEVWAALDEGVLLRRYRKPDGTTLDVRASCIDSGGHHTQEVYAFANKRRSRRVWAIKGRSESRGQRGRVWPRKPSSKLGHVWYMIGGNAARDWAYGSLAVDKAGPRHVHFPQAAIDGARELDDEFFAQLTREKLIVPRGQQYTVWQKPAEAHEAGVCFVYAYAAVCGLQALSGKYVKLGEADIEAAPAEAGDTAGETMTESTPADAIAAAVERARRLSRPAAAVQPAAPTPPASTDKGELYL
>NC_016585.1|WP_014188166.1|439887_440121_+|gpW-family-protein
MTDVTILEAWLADARAAHHALRIGQQKVSVRFGDRVVEYAPANATQLASYIASLERQIAAAKGRRGPAVSPYVRMIG
>NC_016585.1|WP_048816526.1|440120_441731_+|phage-portal-protein
MATAPVILDQHGRPIPQAEIRRARAQAAMGAFLAGSGNAPELRDWTPAAGSPDADLDGDRQTIVARARDLERNDALVSGAVQSLKDSAIGFGLDFQSMPDYRALGIGRDQAQDAARRIESIWHEWSEDRDACDVTGQLPFGAMLRQSVQSDLVAGESLQLALWLPERQRRLGSRFATVMQTVEADRLSNPQDRIGDPRLRDGVEIDGYGAPVAYHIRSSHPGDLFMPWAMAAAEWQRVPLRGPGGRRVVIHSFDQKRPGQHRGVSVFAPVMTELKQRARFQRAELQAAVVNAVIAAVLESPADGQTLLDLFGDANSYMDMRNTQPSVQLGIGPGGAIPRLLPGESLKGYSSNRPSAGMDGFVTTVSRLIATGIGMTYETFMRDFSKTNYSSARASLLEGWRFVLFLRMHKTLTWCRPTLDLVLEEAVWRGYIDLPGFSESRARRQAWLRGVWRGPARGWVDPVKEITAAAMRVRLGISTLRDEALDQGRDLDDLLDQIALEQEALKARGLTLPEVNFMPTPDPIENAQPEPAAAGA
>NC_016585.1|WP_052315461.1|441746_442586_+|S49-family-peptidase
MLKTMQPVLVAPAWAETAAARMVQLTRAGAELPAGCTRLGEVNGTRRPYEVDRGVAVVSVAGLLVPKLGYIGASWATGYDGLRFQLAHAFADPDVRAVCLDIDSGGGIAQGCFDLVDWIVATKKAAAKPVGAICSEEAYSAAYAIACAADSIAVPRTGGVGSIGVWLMHWDYSRMLEEAGLKPTLIQSGAHKTDGHPYAALPDAVRADWQGQVDALRQLFAETVARARGLDVAAVLATEARCFEGPVGTAEAVRLGLADAVLPPDQAFAALVDHVRDIQ
>NC_016585.1|WP_014188168.1|442582_443104_+|hypothetical-protein
MKTFSFAHLNPFGRSKAADGETQAGTDSTPKAGEESGQQDQEDDKEKPADGDEPKAGSQQAAAPSERERCAAIFAAPAAAGRVQLAAHLAFNTDLTVEAACAALEAAPIGATAPGASTPTGNPLALAAMDAHPNPTVGASTDTGSLSDDEKAAAAVLSSMAAVGLIAKKDGTR
>NC_016585.1|WP_014188169.1|443100_443460_+|head-decoration-protein
MTPASFSSQTSQPLPSLIAGDFPRVTRLVTIASGAGVLPAGAVLGRIAAGGKFTLSAAASSDGSEAVRAVLAEPVDASLSDVVAVVYLSGEFNAGELTFGAGHSAASAADALRDLSIFL
>NC_016585.1|WP_014188170.1|443472_444498_+|major-capsid-protein
MDIYSTLAMLGVLRSLRAKAPRFLLDMFFPLASFSDTEKIIFDVEVDDIEVAPFVSPLAAGRVGTDTGYETKMFAPAYVKPLHDIKPDEPLRRLAGEPLAGSLSAAAREQAILGAKLQRQLTQILRRKEVMAAEVLRTGKCVVKGEKYPEVLVDFQRAGDLSLVLSAGARWGEAGVSPYADLSEWIDLVGQKSGAAVNVVVMDAKAWALFEADPKLEKVLDRNLGQAAIVQMGFQPGVPGTPVYKGRIGMVELYTYNDTYTEGGVTKPLLPDHTVLLGATGAMEGTQAHGAILDPRAGYQALEVFPKSWIEENPGRRLLLSQSAPLVYPRRPNACMAATVR
>NC_016585.1|WP_014188171.1|444501_444831_+|hypothetical-protein
MAKLRLLATVKVAKETTLRPGAVIEVKDPEDEQAASLVARGFARWVKAGDGIEEDGLPLDRIIAAIGQLDPANAKHFRGGKPELKALGELLGVDITADQRDRAWAALQG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016585_1	1.1\|176664\|42\|NC_016585\|CRISPRCasFinder	176664-176705	42	NC_016588.1	83383-83424	0	1.0

1. spacer 1.1|176664|42|NC_016585|CRISPRCasFinder matches to position: 83383-83424, mismatch: 0, identity: 1.0

gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	CRISPR spacer
gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	Protospacer
******************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016585_1	1.1\|176664\|42\|NC_016585\|CRISPRCasFinder	176664-176705	42	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	176664-176705	0	1.0
NC_016585_1	1.1\|176664\|42\|NC_016585\|CRISPRCasFinder	176664-176705	42	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	83383-83424	0	1.0
NC_016585_2	2.1\|436362\|41\|NC_016585\|CRISPRCasFinder	436362-436402	41	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	436362-436402	0	1.0
NC_016585_1	1.1\|176664\|42\|NC_016585\|CRISPRCasFinder	176664-176705	42	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	272694-272735	1	0.976

1. spacer 1.1|176664|42|NC_016585|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	CRISPR spacer
gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	Protospacer
******************************************

2. spacer 1.1|176664|42|NC_016585|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	CRISPR spacer
gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	Protospacer
******************************************

3. spacer 2.1|436362|41|NC_016585|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 0, identity: 1.0

acggcgaccgcccccccaagccgtaaggcggtttcagccgc	CRISPR spacer
acggcgaccgcccccccaagccgtaaggcggtttcagccgc	Protospacer
*****************************************

4. spacer 1.1|176664|42|NC_016585|CRISPRCasFinder matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.976

gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	CRISPR spacer
gcgtgttggacgagccgctggcgaagatgctgccggtgccgc	Protospacer
********** *******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

118364 : 183639

Burkholderia_virus(28.57%)

integrase,transposase,protease

attL 116545:116562|attR 175850:175867

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
116545:116562	attL	NA	NA	NA	NA
WP_085938453.1\|118364_119119_-\|transposase	IS5-like element ISAli12B family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-26	50.4
WP_065814230.1\|119539_121684_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_044551290.1\|121892_122168_-	hypothetical protein	NA	NA	NA	NA
WP_014187898.1\|122396_123074_-	hypothetical protein	NA	NA	NA	NA
WP_014187900.1\|123150_123801_-	hypothetical protein	NA	NA	NA	NA
WP_162488202.1\|124255_124765_+	hypothetical protein	NA	NA	NA	NA
WP_162488203.1\|124991_125132_-	hypothetical protein	NA	NA	NA	NA
WP_014187902.1\|125206_125518_-	hypothetical protein	NA	NA	NA	NA
WP_014187903.1\|125533_125989_-	hypothetical protein	NA	NA	NA	NA
WP_162488268.1\|126274_126784_-	response regulator transcription factor	NA	NA	NA	NA
WP_014187906.1\|127070_127370_-	hypothetical protein	NA	NA	NA	NA
WP_014187907.1\|128180_128582_-	hypothetical protein	NA	NA	NA	NA
WP_193353751.1\|128591_128915_-	hypothetical protein	NA	NA	NA	NA
WP_162488269.1\|129712_130120_+	hypothetical protein	NA	NA	NA	NA
WP_012978168.1\|130159_130516_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014187911.1\|130655_131357_+	thioredoxin family protein	NA	NA	NA	NA
WP_014187912.1\|131383_132667_+	CAP domain-containing protein	NA	NA	NA	NA
WP_014187913.1\|132713_133301_+	sulfurtransferase	NA	NA	NA	NA
WP_044551308.1\|133564_133747_+	hypothetical protein	NA	NA	NA	NA
WP_014187914.1\|133936_137203_-	relaxase domain-containing protein	V5UQN3	Mycobacterium_phage	9.6e-18	22.6
WP_014187915.1\|137202_137499_-	hypothetical protein	NA	NA	NA	NA
WP_014187916.1\|138021_138537_+	hypothetical protein	NA	NA	NA	NA
WP_162488204.1\|138612_139452_+	hypothetical protein	NA	NA	NA	NA
WP_014187918.1\|139453_140188_+	hypothetical protein	NA	NA	NA	NA
WP_014187919.1\|140494_142546_+	protein kinase	NA	NA	NA	NA
WP_044551314.1\|142576_143386_+	serine/threonine protein kinase	A0A291AU40	Pandoravirus	4.5e-09	27.0
WP_014187920.1\|143382_146412_+	AAA family ATPase	NA	NA	NA	NA
WP_014187921.1\|146419_147679_+	hypothetical protein	NA	NA	NA	NA
WP_014187922.1\|147675_148947_+	hypothetical protein	NA	NA	NA	NA
WP_044551318.1\|149168_151217_-\|protease	BREX system Lon protease-like protein BrxL	NA	NA	NA	NA
WP_014187924.1\|151216_153532_-	BREX-1 system phosphatase PglZ type B	NA	NA	NA	NA
WP_014187925.1\|153528_155271_-	AIPR family protein	E5G6M2	Salmonella_phage	9.3e-28	24.7
WP_014187926.1\|155267_158756_-	hypothetical protein	NA	NA	NA	NA
WP_014187927.1\|158801_162248_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_014187928.1\|162244_162808_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_044551321.1\|162809_163607_-	hypothetical protein	NA	NA	NA	NA
WP_162488205.1\|164268_166620_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014187931.1\|166723_167092_+	hypothetical protein	NA	NA	NA	NA
WP_162488206.1\|167199_167859_-	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_044551328.1\|167963_168356_+	hypothetical protein	NA	NA	NA	NA
WP_085938476.1\|169744_170976_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	5.8e-109	70.3
WP_162488207.1\|171735_181638_-	DUF4347 domain-containing protein	A0A2D1GMW8	Marinobacter_phage	2.4e-19	37.6
175850:175867	attR	NA	NA	NA	NA
WP_044551732.1\|182150_182324_+	hypothetical protein	NA	NA	NA	NA
WP_085938476.1\|182408_183639_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	5.8e-109	70.3

DBSCAN-SWA_2

415280 : 444498

Moraxella_phage(13.33%)

head,integrase,portal,terminase,capsid

attL 418817:418834|attR 440843:440860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014188136.1\|415280_416111_-\|integrase	tyrosine-type recombinase/integrase	B0VK72	Azospirillum_phage	8.9e-53	41.8
WP_146191605.1\|416157_416355_-	hypothetical protein	NA	NA	NA	NA
WP_014188137.1\|416409_416760_-	hypothetical protein	NA	NA	NA	NA
WP_044551418.1\|416756_416939_-	hypothetical protein	NA	NA	NA	NA
WP_162488218.1\|416940_417327_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_014188139.1\|417978_418299_-	hypothetical protein	NA	NA	NA	NA
WP_014188140.1\|418428_418692_+	hypothetical protein	NA	NA	NA	NA
418817:418834	attL	NA	NA	NA	NA
WP_014188141.1\|419749_420616_+	hypothetical protein	NA	NA	NA	NA
WP_014188142.1\|420619_420898_+	hypothetical protein	NA	NA	NA	NA
WP_162488219.1\|420897_421065_+	hypothetical protein	NA	NA	NA	NA
WP_014188143.1\|421366_422410_+	hypothetical protein	NA	NA	NA	NA
WP_014188144.1\|422409_422979_+	hypothetical protein	NA	NA	NA	NA
WP_162488220.1\|423276_424503_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_014188147.1\|424821_425640_+	hypothetical protein	NA	NA	NA	NA
WP_014188148.1\|425636_426257_+	AAA family ATPase	W8ECJ6	Mycobacterium_phage	3.2e-07	32.3
WP_014188149.1\|426261_426960_+	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_014188150.1\|427033_427411_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	8.7e-32	48.8
WP_162488278.1\|427451_428204_-	hypothetical protein	NA	NA	NA	NA
WP_014188152.1\|428203_429286_-	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.1e-54	36.4
WP_014188153.1\|429348_430455_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	4.0e-101	52.8
WP_014188154.1\|430976_431780_+	hypothetical protein	NA	NA	NA	NA
WP_044551432.1\|431805_432024_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014188155.1\|432149_432425_+	hypothetical protein	NA	NA	NA	NA
WP_014188156.1\|432435_433203_+	hypothetical protein	NA	NA	NA	NA
WP_014188157.1\|433306_433561_+	hypothetical protein	NA	NA	NA	NA
WP_014188158.1\|433573_433756_+	hypothetical protein	NA	NA	NA	NA
WP_014188159.1\|433752_434751_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014188160.1\|434752_435259_+	host-nuclease inhibitor Gam family protein	A0A0C4UQY5	Shigella_phage	5.1e-11	29.5
WP_014188161.1\|435332_436124_+	phage site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	8.8e-26	36.5
WP_014188162.1\|436120_436387_+	hypothetical protein	NA	NA	NA	NA
WP_014188163.1\|436456_437203_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	5.6e-38	43.6
WP_014188164.1\|437292_437823_+\|terminase	terminase small subunit	V5YUM0	Pseudomonas_phage	1.6e-10	34.6
WP_014188165.1\|437806_439891_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	8.7e-97	37.0
WP_014188166.1\|439887_440121_+	gpW family protein	A0A2D1GN20	Marinobacter_phage	1.9e-05	46.8
WP_048816526.1\|440120_441731_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	5.7e-72	33.1
440843:440860	attR	NA	NA	NA	NA
WP_052315461.1\|441746_442586_+	S49 family peptidase	A0A286MNI8	Klebsiella_phage	2.6e-44	44.1
WP_014188168.1\|442582_443104_+	hypothetical protein	NA	NA	NA	NA
WP_014188169.1\|443100_443460_+\|head	head decoration protein	Q6VT74	Vibrio_phage	5.1e-05	47.1
WP_014188170.1\|443472_444498_+\|capsid	major capsid protein	V5Q8G6	Xylella_phage	9.6e-57	39.5

DBSCAN-SWA_3

767732 : 814782

uncultured_Mediterranean_phage(29.41%)

head,integrase,portal,terminase,tRNA,protease

attL 776207:776224|attR 821776:821793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014188426.1\|767732_770417_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-75	38.0
WP_014188427.1\|770554_771346_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.3e-53	47.3
WP_014188428.1\|771361_771877_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_014188429.1\|771954_772194_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.0e-05	48.0
WP_014188430.1\|772348_772984_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.3e-40	47.9
WP_014188431.1\|772980_773805_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.8e-38	33.9
WP_014188432.1\|773815_774493_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_162488292.1\|774509_775568_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.8e-18	40.0
WP_162488293.1\|775611_776622_-	SPOR domain-containing protein	NA	NA	NA	NA
776207:776224	attL	NA	NA	NA	NA
WP_014188435.1\|776663_778424_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_014188436.1\|778467_779667_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_014188437.1\|779859_780216_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	2.9e-21	45.7
WP_014188438.1\|780264_781038_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_014188439.1\|781155_781728_+	hypothetical protein	NA	NA	NA	NA
WP_014188440.1\|782203_783046_-	hypothetical protein	NA	NA	NA	NA
WP_014188441.1\|783129_783477_-	DUF2190 family protein	A0A076G9K1	Pseudoalteromonas_phage	2.1e-11	41.1
WP_014188442.1\|783480_783696_-	hypothetical protein	NA	NA	NA	NA
WP_162488294.1\|783698_785627_-\|head	Mu-like prophage major head subunit gpT family protein	A0A076G7Y9	Pseudoalteromonas_phage	2.0e-55	32.5
WP_014188444.1\|785635_785971_-	hypothetical protein	NA	NA	NA	NA
WP_014188445.1\|785967_787383_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	6.7e-93	41.3
WP_014188446.1\|787497_789363_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	1.3e-128	46.0
WP_014188447.1\|789349_789895_-	hypothetical protein	NA	NA	NA	NA
WP_162488249.1\|790253_790859_-	hypothetical protein	NA	NA	NA	NA
WP_014188450.1\|790821_791673_-	hypothetical protein	A0A2H4JDG9	uncultured_Caudovirales_phage	1.6e-12	42.9
WP_162488295.1\|791782_791953_-	transcriptional regulator	NA	NA	NA	NA
WP_044551573.1\|792133_792841_-	hypothetical protein	NA	NA	NA	NA
WP_014188453.1\|793096_793729_-	hypothetical protein	NA	NA	NA	NA
WP_014188454.1\|793813_794590_-	hypothetical protein	NA	NA	NA	NA
WP_044551577.1\|794644_794848_-	hypothetical protein	NA	NA	NA	NA
WP_044551900.1\|794964_795177_+	transcriptional regulator	NA	NA	NA	NA
WP_162488250.1\|795380_795878_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_014188456.1\|796106_797342_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.7e-82	46.0
WP_162488251.1\|797647_798373_-	hypothetical protein	NA	NA	NA	NA
WP_162488252.1\|798290_798797_-	hypothetical protein	NA	NA	NA	NA
WP_014188459.1\|799050_799491_+	hypothetical protein	NA	NA	NA	NA
WP_014188460.1\|799516_800134_+	hypothetical protein	NA	NA	NA	NA
WP_014188461.1\|800351_800828_+	hypothetical protein	NA	NA	NA	NA
WP_014188462.1\|801058_803716_+	aminopeptidase N	NA	NA	NA	NA
WP_044551582.1\|803819_804200_-	cytochrome c family protein	NA	NA	NA	NA
WP_014188464.1\|804329_804983_-	carbon monoxide dehydrogenase subunit G	NA	NA	NA	NA
WP_014188465.1\|805169_805628_-	hypothetical protein	NA	NA	NA	NA
WP_014188466.1\|805828_806350_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	7.6e-26	50.7
WP_014188467.1\|806468_806876_+	hypothetical protein	NA	NA	NA	NA
WP_014188468.1\|807185_807344_+	hypothetical protein	NA	NA	NA	NA
WP_162488296.1\|807625_808009_-	response regulator	NA	NA	NA	NA
WP_014188470.1\|808031_811145_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	7.4e-76	24.1
WP_014188471.1\|811149_812307_-	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	2.3e-14	27.9
WP_014188472.1\|812410_812764_-	hypothetical protein	NA	NA	NA	NA
WP_162488253.1\|812858_813734_-	glycosyltransferase	NA	NA	NA	NA
WP_014188474.1\|814155_814782_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	9.1e-26	36.9
821776:821793	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_016587

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016587_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016587_1

148003-148118

Orphan

Consensus_repeat	Method
CTGAACGTTTGAAACACCGTGAAACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016587_1

>merge|NC_016587|1|148003-148118|CRISPRCasFinder
CTGAACGTTTGAAACACCGTGAAACAGGGGTGCGGGGGGTGTTCCACTGTTTCATCCGGCGGCAGGGCGGTGCCAAGGCGGTGCCGGACTGAACGTTTGAAACGCCGTGAAACAGG

>NC_016587|1|1|148003-148118|CRISPRCasFinder
CTGAACGTTTGAAACACCGTGAAACAGG	GGTGCGGGGGGTGTTCCACTGTTTCATCCGGCGGCAGGGCGGTGCCAAGGCGGTGCCGGA
CTGAACGTTTGAAACGCCGTGAAACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016587.1\|WP_085938453.1\|137243_137998_-\|IS5-like-element-ISAli12B-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_016587.1\|WP_014189408.1\|149768_150179_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350315
NC_016587.1\|WP_014189397.1\|136676_137225_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380042
NC_016587.1\|WP_014189402.1\|144070_145708_+\|glycosyltransferase-family-39-protein	unknown	unknown	unknown
NC_016587.1\|WP_162488463.1\|136463_136637_+\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372613
NC_016587.1\|WP_014189399.1\|140847_142713_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NC_016587.1\|WP_044553313.1\|152996_153692_-\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_016587.1\|WP_014189409.1\|150178_150430_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_016587.1\|WP_044553129.1\|150520_151399_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NC_016587.1\|WP_014189415.1\|155161_156493_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_016587.1\|WP_014189400.1\|142939_143284_-\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NC_016587.1\|WP_014189407.1\|149277_149772_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NC_016587.1\|WP_014189403.1\|145704_146643_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NC_016587.1\|WP_014189414.1\|154105_154975_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NC_016587.1\|WP_014189406.1\|148357_149242_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NC_016587.1\|WP_162488421.1\|143363_143810_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NC_016587.1\|WP_162488422.1\|146639_147953_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NC_016587.1\|WP_014189396.1\|135997_136195_-\|hypothetical-protein	unknown	unknown	unknown
NC_016587.1\|WP_014189412.1\|152635_152908_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NC_016587.1\|WP_014189411.1\|151449_152487_-\|sodium-dependent-bicarbonate-transport-family-permease	unknown	unknown	gnl\|CDD\|377582

Protein	Function_ID	Function_description	E-value
NC_016587.1\|WP_085938453.1\|137243_137998_-\|IS5-like-element-ISAli12B-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.23318e-28
NC_016587.1\|WP_014189408.1\|149768_150179_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350315	cd18748, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.6436e-74
NC_016587.1\|WP_014189397.1\|136676_137225_-\|hypothetical-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	0.000176032
NC_016587.1\|WP_162488463.1\|136463_136637_+\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|372613	pfam13467, RHH_4, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	1.26055e-14
NC_016587.1\|WP_014189399.1\|140847_142713_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NC_016587.1\|WP_044553313.1\|152996_153692_-\|RNA-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	9.14972e-62
NC_016587.1\|WP_014189409.1\|150178_150430_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	5.175e-16
NC_016587.1\|WP_044553129.1\|150520_151399_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	5.04312e-68
NC_016587.1\|WP_014189400.1\|142939_143284_-\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	6.68786e-28
NC_016587.1\|WP_014189407.1\|149277_149772_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	1.8424e-11
NC_016587.1\|WP_014189403.1\|145704_146643_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	5.18888e-45
NC_016587.1\|WP_014189414.1\|154105_154975_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.19272e-163
NC_016587.1\|WP_014189406.1\|148357_149242_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	3.67368e-31
NC_016587.1\|WP_162488421.1\|143363_143810_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	4.2675e-13
NC_016587.1\|WP_162488422.1\|146639_147953_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.00728e-10
NC_016587.1\|WP_014189415.1\|155161_156493_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NC_016587.1\|WP_014189412.1\|152635_152908_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.62703e-23
NC_016587.1\|WP_014189411.1\|151449_152487_-\|sodium-dependent-bicarbonate-transport-family-permease	gnl\|CDD\|377582	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily. Family of bacterial proteins that are likely to be part of the Na(+)-dependent bicarbonate transporter (sbt) family. Members carry 10TMS in a 5+5 duplicated structure. The loop between helices 5 and 6 in Synechocystis PCC6803 is likely to be the location for regulatory mechanisms governing the activation of the transporter.	1.81292e-103

>NC_016587.1|WP_162488422.1|146639_147953_-|O-antigen-ligase-family-protein
MRLSRRRFPLIPTESMPANSPDLATPRTAPTSAPAAGGLDAMLRTLAGAAALLLGPLAAVAPRGLPVWAILVLLLSLAGLAQRGAFGRILRLTPPVAAVTAFLALALASSLWSPSARAAATVGEIGYIALGALAGGAWIAGMPAAELRRLAKLFLAGGLAGGLLFAVEAALDFPLNRWWNGVPDDQLPNLLNGNVPKRTAALLCLLVWPAALAVDRFGRRALAMLVPVGYALACLPLTSRSAMLGIAAGLVTLAAARASARWTRRLFAAAVSAAFLLVLPAALLFSGPLDLDHSPLLFRSAQHRVEIWGHAAERALRTPVFGQGIDASRSLPPEGAVSEFSPIGDSLLPLHPHNAFLQVWLETGAVGAALALAVLLMLLAATARLDRHAQPFALALFAAALAMGSTAYGIWQPWWMSGFLAAALMLRLAARIGEQTR
>NC_016587.1|WP_014189403.1|145704_146643_-|glycosyltransferase-family-9-protein
MSKRPLRILVIKLGAFGDFFLAQTAFAAIRRHHAGDRVTLLTLPSLAPLARMSGLFDEVLEDPRDRSLSAYLAIRKTLRAHRFDRVYDLQAQTRTDLYHRLLFPGPWPEWSGTASGASHPDRYEGRRKVPVRERYVRQLAPFGIVPDETPDLSWLDADISGFGLPERFALLVPGSSPGRPDKRWPVRRYAEVAAALAERGIVPAVIGTGIERDLARSIAEYCPQAVDLTDRTSVPELGGLARRAWGAVGNDTGPTHLIAAVGCPTVVVFSDASNPIHSTGPRVLIHHRPDFNDIDSAGVVEALDRAREKGGA
>NC_016587.1|WP_014189402.1|144070_145708_+|glycosyltransferase-family-39-protein
MTPVPSTARPSLLDRVAAAPWWLLCAGLAAAMALSILLVGFRLPYWVHADQDLVLAYHGLLFGDGLPQEYFDHPGYGYFLVIDVWYRLLHALGFLPVAILSALPSGSDVAATQAVWQSLIQAGRALSILLTAAFAVSFTTLLRGLVGDRRVALLAGILLAFGVGLTAQGRQMRTDLLSAGFVVLGLLLFLRAVRPAEGKRCGGASLLQLALGGLLVGLAMVTKVQAVFLAMGLPVAAILFGRRAEREAASGTGWGKGWGVAALVGLLAAAAAVPAFGLIQAGLAGWGRAVYPYTPVGGGLSGGGYQAVVAGWVLVGILVHAAVHRVPPVRVVAGAAAVLLGLAVGLLALDIRWNEQNAIAVANFVEHMFVFSSWRHGAALQGQGNVVGEGTLALLLAGIGRTLAIRTIVLHPDNIPQTIVVEWFAIAGAAVLWRRGQRLAAVQALFLLLVAWGLEALFSLRGFQRAYAAYTDPLAILSAAWVLARMPGLLERTKSRRWILGGVALVVVAAHAWPIIEIRRLPNPVTHCEWIPIYMPKVAPFPFCR
>NC_016587.1|WP_162488421.1|143363_143810_-|DUF2934-domain-containing-protein
MADTDDIQERIRRRAHELWESEGHPHGRDADHWAQAEAEIRGAGALEPTEKVAGSRKKTGSSKAAGKSTRAAAESLSEVANAPAEAQPDTPAPPKAKASAKPPGKSKAAAPSEDPAPAKATGAKAAKSPPAKPPRSAKKDSGKTASPG
>NC_016587.1|WP_014189400.1|142939_143284_-|four-helix-bundle-copper-binding-protein
MSATPSMDDCIRNCTDCHRICLETVAHCLNKGGAHAEAGHIRLMLDCIDICRTSADFMIRGSRFHHLTCGACAEICAACADNCDRMADDPMMKRCADMCRRCAESCRAMSRMAA
>NC_016587.1|WP_014189399.1|140847_142713_-|dihydroxy-acid-dehydratase
MPHYRSRTSTHGRNMAGARGLWRATGMKDGDFGKPIIAIANSFTQFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADAVEYMANAHCADALVCISNCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNWRGKVKSVDLIDAMVAAADPTVSDEEAAEMERGSCPTCGSCSGMFTANSMNCLTEALGLSLPGNGTILATHADRKELFLAAGRLAVDLCRRWYQEEDATALPRGIASKAAFENAMTLDIAMGGSTNTVLHILAAAQEGGIDFTMADIDRLSRRVPNVCKVAPAVSDVHIEDVHRAGGIFGILGELDRAGLLNREAPTVHAPTLGEALDRWDVMRTQDSAVHTLYRAAPGGIPTVVPFSQERRWPELDLDREKGVIRKAENAFSQDGGLAVLYGNIAENGCIVKTAGVDASNLVFAGPARVFESQDDAVAGILGDVVKAGEVVVIRYEGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGTSGLSIGHVSPEAAQGGAIGLVQDGDRIEIDIPNRIIRLAVGDEEMQRRRDAMNTKGVDAWKPASRDRVVSPALRAYAALTTSADRGAVRDVTQVENIAVRR
>NC_016587.1|WP_085938453.1|137243_137998_-|IS5-like-element-ISAli12B-family-transposase
MRRYALRDDQWERVQDFLPGRVGHVGGTAKDNRLFVEAVLYRYRAGIPWRDLPTRFGDWKNTHRRYRRWCESGVFERLFKALAEDSDNEYMMLDATIVRAHQHSAGAPKKGGACQAIGRSRGGLTTKIHAIVDALGNPVAISLTPGQASDFSQAAPLLDAVEPQALIADKAYDGDALIDALKERDIVPVIPSKANRLIARDTDFALYRERNLVERFFNKLKGFRAIATRYDKLASTFLAAVYLVSAVIWLN
>NC_016587.1|WP_014189397.1|136676_137225_-|hypothetical-protein
MGQVDEAIKTGRRSVEIAEESNHLFSRLFALTHLGWTHIICGQLKASIPALEAALSVGHAIHAPLLLPLVMGGIGYASVLTGNHKSGFAMFENSFALFQQQGGGNGRLHPLGRVPQVLIWYAEALATTGEMDAASQAANDGLEIANSTSQTSLASRAENFLKTFSSWPIRTTHADHQRITIG
>NC_016587.1|WP_162488463.1|136463_136637_+|ribbon-helix-helix-domain-containing-protein
MRLENAVWDGLDAIAQAEGLLTKQLCAKLDARRSKSVDLSSEIRSFVLDYFRGNDAI
>NC_016587.1|WP_014189396.1|135997_136195_-|hypothetical-protein
MSLNLSQSSMVRGADGRLYNVSAQGVTEIAEVQASTVRNLVRSGDRGTFDAADHEAGRYSITPGA
>NC_016587.1|WP_014189406.1|148357_149242_+|GNAT-family-N-acetyltransferase
MLGTEEEAADGYRIRVMSRADLDLAVDWARAEGWNPGLHDAGAFHAVDPAGFLVGLLDGRPVASLSVVRYPANFGFLGFYIVRPEARGRGYGWRLWRAGLRHLEGCTVGLDGVVAQQENYRKSGFALSHRNIRFGGTLPDGGTGPDGGTGGTTLVDARTVPFDRLTALDAELFPAPRPGFLANWIALPGATALAAVKDGDLIGFGVIRPCHSGFKIGPLYAADAGVARDLVLALGRAAGEGPVFLDVPEPNGAGLRMAEELGLSPQFETARMYLGPAPATDLARVFGMTSFELG
>NC_016587.1|WP_014189407.1|149277_149772_-|GNAT-family-N-acetyltransferase
MTVVRRLLPDDAEEYRSLRLEALQRHPEAFGSSHAEESTRPLSSFADRIAGGYIAGGFVDGRLDATAGLLVPTQAKSRHKGMLWGVYVRGNRRGSGLADAVMTALLAHAAEHVEQIHLSVAATNGRAIGFYKRLGFEAFGTEPRALKVDGTYVDEILMVKFMGS
>NC_016587.1|WP_014189408.1|149768_150179_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MLYLLDTNAMSDLIRNPAGPVAGHVRRVGEDAICTSIVVAAELRYGAAKKASAKLSQRVEALLADVAVLPLEPPADAEYGNIRAELETAGHPIGGNDLLIAAHARTLGVILVTANVREFQRVRGLAVENWLESRPE
>NC_016587.1|WP_014189409.1|150178_150430_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MPQPATPQRRQVRLFRNNRSQAVRIPAEFELPGESVFISRDGDRLIIEPIRKKGLLALLESWEPLEEEFPDIDDQPVAPKDIF
>NC_016587.1|WP_044553129.1|150520_151399_-|LysR-family-transcriptional-regulator
MPTPLPPFDLDLLRTFVTIVDSGGFTRAAERLGRTQSTISLQIKRLEDGLGKRLFLREGRGLDLTPDGEILLTYARRLLGMAGEACALLMEPEVGGVVRLGTPEDFATAHLPDVLWRFSRAHPQVALEVQCDFTINLLDRFSRGEYDLVLCKREPQGPAGGVKVWREPLFWVASDRLILDAGAPVPLVLAPPPDIHRKRAIDALDARGRPWRMAYTSPSLAGIKAAVTAGLGVTILPKDMLAPGFHIVNAEHDLPDLPDIETALYRQPGPLPKAVELLAEHIIRSLEKTAAG
>NC_016587.1|WP_014189411.1|151449_152487_-|sodium-dependent-bicarbonate-transport-family-permease
MDALLSAPILFFGLGAAIALTGARIPFPEGFGKALAAYLLVAIGLKGGVALAGADVGSVLPLLLTAALLSLLMPILGFGLLRSAVGLDQVNSAAIAAHYGSVSLVTFVTATKLLESQGVTFGGHMVAALAIMEGPAIVSGLLLAGATGMVSGVAAGGNGATMTVPLGSVPLGGSGGGEPARGGSIKDAIREAAFNGSVLLLAGSLLVGLVIGKPGLQSLHGLFIAPWDGVLCLFLLEMGYLATSRLREAASLSPRLIAFGIVMPLIGAGIGLAAAAALGLGLGDAALLVTLCASASYIAVPAALRHALPAAEPGLSLPLSLGITFPFNILVGIPLYLAVSRAVLS
>NC_016587.1|WP_014189412.1|152635_152908_-|N-acetyltransferase
MEQAVTDNRTMNRFELAVGNRTVYADYRRNGRTLVISYVEAPPSLRGTGAAGRLMEGVMEAARAEGLKILPLCSYAALWMRRNRQDDLLA
>NC_016587.1|WP_044553313.1|152996_153692_-|RNA-pseudouridine-synthase
MTPDSLRARVLHQDELCFVIDKPAGLAVHKAGRITDHLELYLPFLGEPDGEPPKLAHRLDRDTAGCLILGRTPWALKRFGQMFAAGHVEKTYWAVADGIPDAESGVIDLPLLKRIEPGASRSSWTILPDPAGQPAVTEYRVLGTGADGRSWLELRPRTGRTHQIRVHCAAIGCPLVGEPFYGPERLPPGNLHLLARSVAFRMAFDYAAVSAVAPAPAHMRDALSACGWQGD
>NC_016587.1|WP_014189414.1|154105_154975_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MRKPVRKVVFPVAGLGTRFLPATKAIPKEMLPLVDRPLLQHAVEEARAAGIEDFVFVTGRSKRAIEDHFDADTELNRTLEERGKQDALEEVRHSEIAPGRCFYTRQQVPLGLGHAVWCARALIGNDPFAIVLPDDYVQGKTPCLKQMVEAYEEVGGNIVAVVDVPRERTSSYGILDVEKDDGRLATVRGLVEKPKPEEAPSTLSIIGRYILQPEIFDHLEKQQRGAGNEIQLTDAMAKLIGNQPFHGLRFEGTRYDCGDKVGFIEATLAHALNRPDMADKVREMLRKYC
>NC_016587.1|WP_014189415.1|155161_156493_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRIAMIGTGYVGLVSGACFSEFGVHVTCVDKDAGKIERLKRGEIPIYEPGLDDLVARNVAAGRLSFTLDLKEAMQGVDAVFIAVGTPSRRGDGHADLSYVYGAAEEIARHLDHYTVVVTKSTVPVGTGREVEAIIRRVRPDAEFDIASNPEFLREGSAIGDFMRPDRVVIGATSDRAGEVMRRLYRPLYLIETPIVVTSLETAELTKYAANTFLAAKITFINEIADLCEKVGANVHDVARGIGLDGRIGKKFLHPGPGYGGSCFPKDTLALVRTAQQVGSPLRIIETVVDINDKRKKQMAERIIAACGGSVDGKTVAVLGVAFKPNTDDMRDSPSLDIVPALQAAGAHVRAFDPAAMHEAEKLLPGVEWAKDAYGTLEGADCVAILTEWNEFRALDLRRVKSMLKRPVMIDLRNIYNPEDMAKAGFTYTSIGRPSPAGGMDRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016587_1	1.1\|148031\|60\|NC_016587\|CRISPRCasFinder	148031-148090	60	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	148031-148090	0	1.0

1. spacer 1.1|148031|60|NC_016587|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 0, identity: 1.0

ggtgcggggggtgttccactgtttcatccggcggcagggcggtgccaaggcggtgccgga	CRISPR spacer
ggtgcggggggtgttccactgtttcatccggcggcagggcggtgccaaggcggtgccgga	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

528617 : 573714

Avian_leukosis_and_sarcoma_virus(16.67%)

transposase,integrase

attL 527995:528011|attR 585488:585504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
527995:528011	attL	NA	NA	NA	NA
WP_076611714.1\|528617_529680_+\|transposase	IS630-like element ISAli2 family transposase	NA	NA	NA	NA
WP_162488443.1\|529675_529939_-	hypothetical protein	NA	NA	NA	NA
WP_162487961.1\|529931_531542_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_014189768.1\|531881_532094_+	hypothetical protein	NA	NA	NA	NA
WP_014189769.1\|532491_533625_-	hypothetical protein	NA	NA	NA	NA
WP_014189770.1\|533684_535136_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_048816576.1\|535215_536892_-	DUF805 domain-containing protein	A0A140IPJ0	Avian_leukosis_and_sarcoma_virus	3.2e-09	23.9
WP_014189772.1\|536925_538236_-	trypsin-like peptidase domain-containing protein	A0A1S5Y2X3	uncultured_archaeal_virus	9.9e-06	23.6
WP_014189773.1\|538235_539315_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_014189774.1\|539311_540343_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_044553242.1\|540339_540615_-	FHA domain-containing protein	NA	NA	NA	NA
WP_162488444.1\|540948_542424_-	FHA domain-containing protein	NA	NA	NA	NA
WP_014189778.1\|542952_543711_-	OmpA family protein	NA	NA	NA	NA
WP_162488445.1\|543732_545304_-	DUF4384 domain-containing protein	NA	NA	NA	NA
WP_162488446.1\|545306_545690_-	hypothetical protein	NA	NA	NA	NA
WP_014189781.1\|545705_546548_-	hypothetical protein	NA	NA	NA	NA
WP_162488447.1\|546557_546938_-	hypothetical protein	NA	NA	NA	NA
WP_044553250.1\|547009_547303_-	hypothetical protein	NA	NA	NA	NA
WP_162488448.1\|547685_547925_+\|transposase	transposase	NA	NA	NA	NA
WP_162488449.1\|548076_549201_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	7.6e-39	33.9
WP_162488450.1\|549221_549386_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A291LA13	Bordetella_phage	1.4e-07	60.0
WP_014189785.1\|550260_550602_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_014189786.1\|550628_551708_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_014189787.1\|551719_552211_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_014189788.1\|552200_552740_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_014189789.1\|552752_553661_-	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA
WP_014189790.1\|553657_554125_-	NADH-quinone oxidoreductase subunit NuoB	NA	NA	NA	NA
WP_014189791.1\|554121_555321_-	NADH dehydrogenase	NA	NA	NA	NA
WP_014189792.1\|555351_557202_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_014189793.1\|557216_557489_-	MoaD/ThiS family protein	NA	NA	NA	NA
WP_044553255.1\|557576_559382_-	aldehyde ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_044553258.1\|559384_559861_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_014189795.1\|560621_562385_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162488451.1\|562475_562823_+	hypothetical protein	NA	NA	NA	NA
WP_044553425.1\|562814_563282_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_014189797.1\|563458_563836_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_014189798.1\|563843_564995_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_014189799.1\|565061_565559_+	L-2-amino-thiazoline-4-carboxylic acid hydrolase	NA	NA	NA	NA
WP_014189800.1\|565588_566710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014189801.1\|566826_567744_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014189802.1\|567724_568789_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014189803.1\|568797_569565_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-18	29.1
WP_044553429.1\|569662_570331_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.6e-14	29.3
WP_014189805.1\|570346_570898_+	L-2-amino-thiazoline-4-carboxylic acid hydrolase	NA	NA	NA	NA
WP_014189806.1\|570894_572094_+	amidohydrolase	NA	NA	NA	NA
WP_014189807.1\|572090_573380_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_162488452.1\|573285_573714_-\|transposase	transposase	NA	NA	NA	NA
585488:585504	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_016622

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016622_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016622_1

20746-23327

Orphan

Consensus_repeat	Method
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	PILER-CR
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CRISPRCasFinder
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CRT

34 spacers

The CRISPR arrays of NC_016622_1

>merge|NC_016622|1|20746-23327|PILER-CR,CRISPRCasFinder,CRT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGCCAGACGGCGGAGAAGCTGCGCGGGCTGGAACGCACGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAAGGCGATGCGGCCCAGGGTCTGATACGTCTTGATGTCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAACATCGTCGGCATATGGACGATGACCGGGACGATCGGCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCCGCGGAGGAAAGCGCGGCGATCTACGACTGGAACCGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCACCGTCTGGGGAAGATTGGGCATCGGCGCCAAGCCCGGGAGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAGCCGCTTGTCGCCAGCATTGCCCAGCTTGTCGCCGAGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTACAACGCCCGCCAGATCGACGTTCCCGATTGGGTGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAACTTTATTGCTTCGGGATCTCCCCACAGGGCGCCGAACGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAAACCCAGGCAGCGCTCGATCATGCCGGCGAACTGGTGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGAACCCGCGTCGGCGAATAGGGAATGCTGCCCGGAAACGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGCCGAGGCGCGCGACAAGACCGGCCGGACCTGGGCTGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCCGGTCGGCGATGGTTTCGGTCAGCGCCTCCACCTCCGCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGACTGCAGGGTGAGCGCATCCCAGATGACGATGCCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAGGTGAGTCAGCTTGGACACATCCTCGACATCGCCCTGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGATGAAGGCGGCGAACACCGCATTCACGACGGCGGCCTGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTTCACGAGGTCGCCGCCGCCGGCAATGAAGCGGTCGGCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTGCCCTTGGGGAAGGCGAACGAGGCCCAGACCACCAGACCGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTAGAAGCTTTCGGCGGCGATGCCTTTCCAGGCCGACCCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTACTGCTCCAGGCTGATCTCCGGGTGCTCCTCGGCGAGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCCGATCCGGCAGGATCGACAGCACGACCGCGCACCCCCACAGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTCGATGTCCTTGGCGATGTTGCCGAACAGCTTGGTCGGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGGGATGTCGACGCGCTGCCATGCCGATGGATCGGGGTGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTATCATGAGAGGACCACTCATGAACGAAACGAAAAGGAGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCACCATCGGCGGCGCGGTCCTGAAGGCGGGGGCCGGCCTCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCATCGAGCACATCTCCTCCGGCCGCGACTGGGACCTCGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGGTTTCGAACTGAACCTTGGCGAAACGCAGCGCCCCGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAAAGACGGAACGGCGCAGATGGCAACGCCGGTGGTTGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCCATGATTTCTTGCGCCACACCCGCAGGCGCCACGCGGCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAACGCGACGGCGGTCTCGGTCAGCACCACGTCGATGGTGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCTTGTCCATTTCGACCAATTTGCCCATCGCCTTGTTCGGGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCGTGTCCGTCCGGCCGGTCGGCAGCCAGATGGCGCACGGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCACGGTCGGGGTGCCGAACTTCTCCGCGAAGACCAGCCGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCCGAGCGTCAACGGGAGATCGTTCGGCGGCTCGACCGGTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGCAGGAGAACGCCGACGGTCACCGCCGCGCCGATCAGCGGTGTCTTCCCGAGCAGAAATGCTCGGGCCTCTTTGAAAA

>NC_016622|1|1|20746-23326|PILER-CR
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGCCAGACGGCGGAGAAGCTGCGCGGGCTGGAACGCAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAAGGCGATGCGGCCCAGGGTCTGATACGTCTTGATGTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAACATCGTCGGCATATGGACGATGACCGGGACGATCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CCGCGGAGGAAAGCGCGGCGATCTACGACTGGAACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CACCGTCTGGGGAAGATTGGGCATCGGCGCCAAGCCCGGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAGCCGCTTGTCGCCAGCATTGCCCAGCTTGTCGCCGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTACAACGCCCGCCAGATCGACGTTCCCGATTGGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAACTTTATTGCTTCGGGATCTCCCCACAGGGCGCCGAAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAAACCCAGGCAGCGCTCGATCATGCCGGCGAACTGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGAACCCGCGTCGGCGAATAGGGAATGCTGCCCGGAAACG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGCCGAGGCGCGCGACAAGACCGGCCGGACCTGGGCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CCGGTCGGCGATGGTTTCGGTCAGCGCCTCCACCTCCGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGACTGCAGGGTGAGCGCATCCCAGATGACGATGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAGGTGAGTCAGCTTGGACACATCCTCGACATCGCCCT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGATGAAGGCGGCGAACACCGCATTCACGACGGCGGCCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTTCACGAGGTCGCCGCCGCCGGCAATGAAGCGGTCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTGCCCTTGGGGAAGGCGAACGAGGCCCAGACCACCAGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTAGAAGCTTTCGGCGGCGATGCCTTTCCAGGCCGACCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTACTGCTCCAGGCTGATCTCCGGGTGCTCCTCGGCGAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CCGATCCGGCAGGATCGACAGCACGACCGCGCACCCCCACAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTCGATGTCCTTGGCGATGTTGCCGAACAGCTTGGTCGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGGGATGTCGACGCGCTGCCATGCCGATGGATCGGGGTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTATCATGAGAGGACCACTCATGAACGAAACGAAAAGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CACCATCGGCGGCGCGGTCCTGAAGGCGGGGGCCGGCCTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CATCGAGCACATCTCCTCCGGCCGCGACTGGGACCTCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGGTTTCGAACTGAACCTTGGCGAAACGCAGCGCCCCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAAAGACGGAACGGCGCAGATGGCAACGCCGGTGGTT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CCATGATTTCTTGCGCCACACCCGCAGGCGCCACGCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAACGCGACGGCGGTCTCGGTCAGCACCACGTCGATGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CTTGTCCATTTCGACCAATTTGCCCATCGCCTTGTTCGGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CGTGTCCGTCCGGCCGGTCGGCAGCCAGATGGCGCACGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CACGGTCGGGGTGCCGAACTTCTCCGCGAAGACCAGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CCGAGCGTCAACGGGAGATCGTTCGGCGGCTCGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAG	CAGGAGAACGCCGACGGTCACCGCCGCGCCGATCAGCGGT
GTCTTCCCGAGCAGAAATGCTCGGGCCTCTTTGAAA

>NC_016622|1|1|20746-23327|CRISPRCasFinder
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GCCAGACGGCGGAGAAGCTGCGCGGGCTGGAACGCAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAGGCGATGCGGCCCAGGGTCTGATACGTCTTGATGTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACATCGTCGGCATATGGACGATGACCGGGACGATCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGCGGAGGAAAGCGCGGCGATCTACGACTGGAACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACCGTCTGGGGAAGATTGGGCATCGGCGCCAAGCCCGGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGCCGCTTGTCGCCAGCATTGCCCAGCTTGTCGCCGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TACAACGCCCGCCAGATCGACGTTCCCGATTGGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACTTTATTGCTTCGGGATCTCCCCACAGGGCGCCGAAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAACCCAGGCAGCGCTCGATCATGCCGGCGAACTGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GAACCCGCGTCGGCGAATAGGGAATGCTGCCCGGAAACG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GCCGAGGCGCGCGACAAGACCGGCCGGACCTGGGCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGGTCGGCGATGGTTTCGGTCAGCGCCTCCACCTCCGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GACTGCAGGGTGAGCGCATCCCAGATGACGATGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGGTGAGTCAGCTTGGACACATCCTCGACATCGCCCT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GATGAAGGCGGCGAACACCGCATTCACGACGGCGGCCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TTCACGAGGTCGCCGCCGCCGGCAATGAAGCGGTCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TGCCCTTGGGGAAGGCGAACGAGGCCCAGACCACCAGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TAGAAGCTTTCGGCGGCGATGCCTTTCCAGGCCGACCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TACTGCTCCAGGCTGATCTCCGGGTGCTCCTCGGCGAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGATCCGGCAGGATCGACAGCACGACCGCGCACCCCCACAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TCGATGTCCTTGGCGATGTTGCCGAACAGCTTGGTCGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GGGATGTCGACGCGCTGCCATGCCGATGGATCGGGGTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TATCATGAGAGGACCACTCATGAACGAAACGAAAAGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACCATCGGCGGCGCGGTCCTGAAGGCGGGGGCCGGCCTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ATCGAGCACATCTCCTCCGGCCGCGACTGGGACCTCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GGTTTCGAACTGAACCTTGGCGAAACGCAGCGCCCCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAAGACGGAACGGCGCAGATGGCAACGCCGGTGGTT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CATGATTTCTTGCGCCACACCCGCAGGCGCCACGCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACGCGACGGCGGTCTCGGTCAGCACCACGTCGATGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TTGTCCATTTCGACCAATTTGCCCATCGCCTTGTTCGGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GTGTCCGTCCGGCCGGTCGGCAGCCAGATGGCGCACGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACGGTCGGGGTGCCGAACTTCTCCGCGAAGACCAGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGAGCGTCAACGGGAGATCGTTCGGCGGCTCGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGGAGAACGCCGACGGTCACCGCCGCGCCGATCAGCGGT
GTCTTCCCGAGCAGAAATGCTCGGGCCTCTTTGAAAA

>NC_016622|1|1|20746-23327|CRT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GCCAGACGGCGGAGAAGCTGCGCGGGCTGGAACGCAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAGGCGATGCGGCCCAGGGTCTGATACGTCTTGATGTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACATCGTCGGCATATGGACGATGACCGGGACGATCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGCGGAGGAAAGCGCGGCGATCTACGACTGGAACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACCGTCTGGGGAAGATTGGGCATCGGCGCCAAGCCCGGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGCCGCTTGTCGCCAGCATTGCCCAGCTTGTCGCCGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TACAACGCCCGCCAGATCGACGTTCCCGATTGGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACTTTATTGCTTCGGGATCTCCCCACAGGGCGCCGAAC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAACCCAGGCAGCGCTCGATCATGCCGGCGAACTGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GAACCCGCGTCGGCGAATAGGGAATGCTGCCCGGAAACG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GCCGAGGCGCGCGACAAGACCGGCCGGACCTGGGCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGGTCGGCGATGGTTTCGGTCAGCGCCTCCACCTCCGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GACTGCAGGGTGAGCGCATCCCAGATGACGATGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGGTGAGTCAGCTTGGACACATCCTCGACATCGCCCT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GATGAAGGCGGCGAACACCGCATTCACGACGGCGGCCTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TTCACGAGGTCGCCGCCGCCGGCAATGAAGCGGTCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TGCCCTTGGGGAAGGCGAACGAGGCCCAGACCACCAGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TAGAAGCTTTCGGCGGCGATGCCTTTCCAGGCCGACCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TACTGCTCCAGGCTGATCTCCGGGTGCTCCTCGGCGAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGATCCGGCAGGATCGACAGCACGACCGCGCACCCCCACAG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TCGATGTCCTTGGCGATGTTGCCGAACAGCTTGGTCGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GGGATGTCGACGCGCTGCCATGCCGATGGATCGGGGTG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TATCATGAGAGGACCACTCATGAACGAAACGAAAAGGA
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACCATCGGCGGCGCGGTCCTGAAGGCGGGGGCCGGCCTC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ATCGAGCACATCTCCTCCGGCCGCGACTGGGACCTCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GGTTTCGAACTGAACCTTGGCGAAACGCAGCGCCCCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AAAGACGGAACGGCGCAGATGGCAACGCCGGTGGTT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CATGATTTCTTGCGCCACACCCGCAGGCGCCACGCGGC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AACGCGACGGCGGTCTCGGTCAGCACCACGTCGATGGT
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	TTGTCCATTTCGACCAATTTGCCCATCGCCTTGTTCGGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	GTGTCCGTCCGGCCGGTCGGCAGCCAGATGGCGCACGG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	ACGGTCGGGGTGCCGAACTTCTCCGCGAAGACCAGCC
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	CGAGCGTCAACGGGAGATCGTTCGGCGGCTCGACCG
GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC	AGGAGAACGCCGACGGTCACCGCCGCGCCGATCAGCGGT
GTCTTCCCGAGCAGAAATGCTCGGGCCTCTTTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016622.1\|WP_014246533.1\|30157_30472_+\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NC_016622.1\|WP_014246529.1\|26894_27131_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_014246510.1\|5827_6472_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|369534
NC_016622.1\|WP_014246514.1\|11232_12300_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_016622.1\|WP_085938451.1\|30505_31723_-\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NC_016622.1\|WP_044549332.1\|6670_9208_+\|disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|350192
NC_016622.1\|WP_014246516.1\|13856_16283_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|273955
NC_016622.1\|WP_014246519.1\|17740_19813_+\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NC_016622.1\|WP_014246532.1\|29864_30158_+\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	unknown	unknown	gnl\|CDD\|377822
NC_016622.1\|WP_014246535.1\|31818_32085_-\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_014246515.1\|12319_13504_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270305
NC_016622.1\|WP_014246530.1\|27134_28226_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NC_016622.1\|WP_014246536.1\|32339_33326_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|237865
NC_016622.1\|WP_044550211.1\|19851_20481_+\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|370730
NC_016622.1\|WP_014246518.1\|16497_17730_+\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|180801
NC_016622.1\|WP_014246531.1\|28447_29746_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|214963
NC_016622.1\|WP_014246527.1\|23838_25497_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_016622.1\|WP_014246528.1\|25493_26789_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225179
NC_016622.1\|WP_014246512.1\|9371_9809_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NC_016622.1\|WP_162487930.1\|9902_10982_+\|TIM44-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830

Protein	Function_ID	Function_description	E-value
NC_016622.1\|WP_014246533.1\|30157_30472_+\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	1.32401e-37
NC_016622.1\|WP_085938451.1\|30505_31723_-\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	2.082e-152
NC_016622.1\|WP_014246510.1\|5827_6472_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|369534	pfam07813, LTXXQ, LTXXQ motif family protein. This protein family includes two copies of a five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP. This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy may indicate that these two proteins are functionally related.	5.93112e-18
NC_016622.1\|WP_014246514.1\|11232_12300_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.99956e-144
NC_016622.1\|WP_044549332.1\|6670_9208_+\|disulfide-oxidoreductase	gnl\|CDD\|350192	cd18805, SF2_C_suv3, C-terminal helicase domain of ATP-dependent RNA helicase. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in mitochondria and is a subunit of the degradosome complex involved in regulation of RNA surveillance and turnover. SUV3 exhibits DNA and RNA-dependent ATPase, DNA and RNA-binding and DNA and RNA unwinding activities. SUV3 is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.56765e-31
NC_016622.1\|WP_014246516.1\|13856_16283_+\|penicillin-binding-protein-1A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_016622.1\|WP_014246519.1\|17740_19813_+\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	3.69393e-170
NC_016622.1\|WP_014246532.1\|29864_30158_+\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	gnl\|CDD\|377822	pfam07362, CcdA, Post-segregation antitoxin CcdA. This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.	1.4114e-19
NC_016622.1\|WP_014246515.1\|12319_13504_-\|extracellular-solute-binding-protein	gnl\|CDD\|270305	cd13587, PBP2_polyamine_2, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This family represents the periplasmic binding domain that functions as the primary polyamine receptor of an uncharacterized ABC-type transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.9642e-122
NC_016622.1\|WP_014246530.1\|27134_28226_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.98236e-23
NC_016622.1\|WP_014246536.1\|32339_33326_-\|SH3-domain-containing-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	6.99414e-06
NC_016622.1\|WP_044550211.1\|19851_20481_+\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|370730	pfam09867, DUF2094, Uncharacterized protein conserved in bacteria (DUF2094). This domain, found in various hypothetical prokaryotic proteins, has no known function.	5.27472e-48
NC_016622.1\|WP_014246518.1\|16497_17730_+\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	4.822e-68
NC_016622.1\|WP_014246531.1\|28447_29746_+\|adenosylhomocysteinase	gnl\|CDD\|214963	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NC_016622.1\|WP_014246527.1\|23838_25497_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.5362e-19
NC_016622.1\|WP_014246528.1\|25493_26789_+\|MFS-transporter	gnl\|CDD\|225179	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only].	2.29092e-114
NC_016622.1\|WP_014246512.1\|9371_9809_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.71229e-31
NC_016622.1\|WP_162487930.1\|9902_10982_+\|TIM44-like-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	1.00934e-45

>NC_016622.1|WP_044550211.1|19851_20481_+|type-VI-secretion-system-associated-protein-TagF
MGFHGKVPARGDFVGHGLPAAVLGPWDRWLSAALGEAGRRLGGEWDPLFAQAPVWRFALSAGLCGAAPLVGVWMPSADRVGRQYPFTIAAGLPAGFDIADAPAACAAWLSRAEALAADACRAGTDVEGLPARLAILGRPEPERISPATRALLNRLSGPLAADASLWWTRGAGRVAPSLLSCSGLPAGPRPTAFLDGAWNRWGWENAGEG
>NC_016622.1|WP_014246519.1|17740_19813_+|type-VI-secretion-system-membrane-subunit-TssM
MADPRPAKAGAKKAGAKPAKRRRKPAAVPSPHRSARARWALSLTGALALGLAGWLLLPRLAAALAPHLLPTVQADWSIRLLPLVLALAGWVAFNRRTDARERAANARLLEALAATRDPELKASLEEIATVRKRMDAVLARLRKRRGGRYLYQLPWYLVIGAPGSGKTTALANAGLGATAADGSVAGPLAGLAGTRNCDWWFTDRAVLIDTAGRYTTQDSRRAVDGRVWSGLLDLLKEHRPLQPANGVLLTLSLPDLAAWDEAERRNHAILIRQRLNELRVQLGLRLPVYLLLTKADLLDGFTTFFDPLDREARSQVWGLTLPAAEREEGPLPVFRDLYAGLVRRLDERLLDRLHQEPDLRRRADAFALPLRVVELEPALADIVDTVFGSEHGEETPRLRGLYLTSATQTGGALALLEPDPAAGASSYFLDRLLPDVVFPEANLAQLDRAVERARRRRSALSAVAALTLALLVGGWWLVSARGNAALLESADAGAAAVEAALRPLDTPPRSLARVDDADPAAILPALDALRALPLAFDSAHSWAEPALAGGLYQGARIAGPSQEAYRRALRSQFLARLALRLEERLRADWALPDQLRQTLRIYRMVGGVETMDAGALAEWVALDWQRTLPGPANEARRRALGDHLAALFAVGFAPVPPDEALVARVEEVLAQSAPPAIARPMPQPGRTELP
>NC_016622.1|WP_014246518.1|16497_17730_+|DotU-family-type-IV/VI-secretion-system-protein
MQADDRADGVELLVEAVPPPVPDTPNPPPRSRDSLNPLLTVAAPVLALAGSLRDRALADSPRSAAAAALERFEREAAAAGLDPDDIAAARVALAATLDDVARAAGHGGASVAEPGAGVRFFDLLDGMLGDPRHHRHALELFYACLSLGFEGRFRDKPGGAHDLARLRDELYRILRRARGDVAAELSPAWAGVAEPFRPLRGGPGGTLPGWIVWAAVALGLSGLYVHLAGTLDRQAEPVVARIAALLPDRPIEIARMVPPPPPTAGPALIARITGQLAPEIRIGAVEVLAGEDGALVIRIPAAAMFATGSDAVKARHRAIVERVGQTLAAEPGGVRVVAHTDDQTPPTGRLPTAQALTDARAEAVRKLLERSLPPARLSAEGHGDQEPVALNDTPAGRDANRRVDIRLYPQ
>NC_016622.1|WP_014246516.1|13856_16283_+|penicillin-binding-protein-1A
MTADRPDHMTEQHRTGQLYAGPRPVRTRDDPSPLDRLSGRLSAGGIALGLARTVASAALASLRRGKPRRKAPPPSAAPPPTPYKPAQRPRRRSGLSFFKLSFFKLPSFTIPRISLPKLRSSKPSARRSGGALPPQPPAPPPGRPGRAPQPPRKGGGWGRRLVQWGLVAAIWCGIALGMVLAWFALDLPDISKVAQFERRASVTVLAADGTEFARFGDLHGTTLSVRDLPPHLVDAVLAIEDRRFYSHFGIDPLGLARAVYVNWRSGRAVQGGSTITQQLAKNLFLTPEKSLKRKIQEAMLALWLETRFTKDQILTAYLNRVYLGAGTFGVDAAARTYFGKPATEVDIRESAVLAGLLKAPSRYAPSSNPDESAERARVVMAAMLDAGYLTQAQYEAARAAKPSPKRKPGGDGRYFADWVTDLVPGFAGPDHGDVIVRTTLDLKMQRAAEQRMEALLAGPGAAANVRQGALVAMSPDGAVRALVGGRDYDSSEFNRATQALRQPGSAFKPFVYLAALEAGWSPDSLIDDAPVQLGNWSPGNYDGKYRGTVTLAAALAHSSNTATARLIDRVGTDRVRRIASNLGIASPLTRDLSLALGTSEVTPLELVRAYAGIANRGAPVWAYAITEIKSRDGTLLYRRQGGGGGAVVDPAHAVQLTRMMGGVLDYGTGRSARLNRPAAAKSGTTQDYHDAWFVGFTADLVAGVWLGNDNNDAMKKVTGGSLPAKLWRDFMMDAHAGKPARPLPGLDGAPAWTPPPGVVPQGGVPVASAEPRSGGGIGSLIEKIAGTSATPFGTAPRVQYDYSNSGVR
>NC_016622.1|WP_014246515.1|12319_13504_-|extracellular-solute-binding-protein
MSKIENAQTETQRSSAETQHAAKSFTRRLLLQSAAAAAGVASVGPFVLREGRAASGSVKIFSWAGYISQDMLADFEKKTGVKATLTEYGTNDELLNQLKATGGAGFDIIHPTVDRVPNYVEFELVQPLDESKVKWDGCLKSSVEGSAGMGGVVGAKRYFAPADWGTEALAYDMKKAPLAYGTASYGDLWAPANAGKVTVRGHSSLIGIALWLESQGKLPHPVRDQFKDEAKARANFDAILKVAAANKKSVAQFWTNENEAQGAFRTNGCVIGQTWDSTAVALRKEGLPVRFVAPKEGALAWMEGFAIPKKAENLENAYAWINWFYTPQAGALYTNHSGISSTAVGAEAHLSDLNKQFFADAYPGDALQKLWWWPIQEAWYVSIRNEYQDRFLAA
>NC_016622.1|WP_014246514.1|11232_12300_-|ABC-transporter-ATP-binding-protein
MSQDVQLDHVTMRFGDTVAVRDVSLTIGAGEFFSFLGPSGCGKTTILRMISGFMEPTAGAVRIGGRDMKGIGPNKRPTALIFQNLALFPLMTVADNIGFGLEVRGVPSADRKRRVRELLELVALPDTADKRVTDLSGGQRQRIAIARALAVEPAVLLLDEPLSALDLKLRQHMRAELRDLQKRTGVTFIYITHDQGEALTMSDRIGVMSRGVLEQVGDGKTIYDHPETAFVASFVGESNRFSGPVVEAAEGWAALDTAFGRLRGRNPRGLAAGDRATLFVRPERLAPESLGAGETDNGLSARVSHSDFEGAFVNAFLDGGLTVQMPHLGQEPAFVPGETVRLGFRTADAVVLPTG
>NC_016622.1|WP_162487930.1|9902_10982_+|TIM44-like-domain-containing-protein
MRQASTIMSEKTRPSSLSATSTTVRGARAATAVAVALVMALAAGTADARAGKSSSSGSRGSRTTEAPAATSTAPNAVSPMERSAAPAAAPGVQRPGSQATAPAAAPSRGFFGGGFMSGLMGGLIGAGILGFILQILLVVFLVRLAMRFFRNRSQTANTAPAGGPLGSQMGGQMGSGNPAYAGGPQGGPLNRDAGDVRYNPVGGAPMGAMGGGNAGPAQRRQASDEIGIQPTDFETFERLLVTVQTAYGREDVDALRAATTPEMLSYFTDDLTENRNRGVVNKVSDVRLLQGDLAEGWREGAQEYATVAMRFSLIDTTVDRASGRVVEGNASQPTEATELWTFVRPRGGQWQLSAIQQAS
>NC_016622.1|WP_014246512.1|9371_9809_+|RNA-binding-S4-domain-containing-protein
MSNTDTEDSTPGRLRIDKWLWYARFFKTRSLAAKLCNDGGVRLSGAVVTKAHASVKPGDVLTFAQGRHIRVIKVVALGSRRGPAPEAQALYEDLAPPVPEERLQDPYRAPFQQPGAGRPTKRDRRAIDALKGDPMMDAALRNETD
>NC_016622.1|WP_044549332.1|6670_9208_+|disulfide-oxidoreductase
MTSSHASAGGGLGRGGRVVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVSIKGRQAVALVTGEEKILPPNPSYWVCTVESMPLDRAVDFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQPMIRRLVPKAEFISRPRFSQLTYAGYKKLTRLPPRSAVVAFSATDVYAIAEMIRRQRGGTAVVLGALSPRTRNAQVGLYQAGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDADLVNRVENHEFETVKALSWRNSALRFDTPGFLLKSLEERAPIPELSRVREADDHLALQALVRDPDIMDLARGRDAVKLLWEVCQVPDFRKVLSDAHTKLLAQVFRSLRGAQRRLDDDWVAKQIARLDRTEGDIDALVARIAHIRTWTYISNRPTWLKDPLHWQERTRAIEDRLSDALHERLTQRFIDRRSATLARTLKDGRSLLGGVRADGEVVVEGHVVGRLEGFRFVPDAPDRSDEAKSLLTAARRALRDELAKRLRAFEAEPDDAFALGPDGVLSADNLPVARLAAGPSVLAPLVVPFDEGMLDQAQRERVRARLDRWLKDHIAARLKPLFALSAVEGLSGPGRGLAFQLVEGLGVLPRAPVAAMVEQLEREDRKALGKLGVRLGVSHLYLTALAKPAAVSLRGLLWAVSKGHPLPVPIPPPGRVSVDAPPVKDGGAPPAFWEAIGYPLAGGRALRVDMLDRLETELLTASKANAPIREVALGQRVGLSAEELGAVLTGLGYVRMVAEDGAVTWKRKRPQGQRQGNRQRRDKPTNEDHPFAKLRQLSGM
>NC_016622.1|WP_014246510.1|5827_6472_+|Spy/CpxP-family-protein-refolding-chaperone
MKRALLTSALLVAGLGVAVPVFAQGGPAGGPQPGGPGPGAGGPDRHFARMCEDQEARLAGKLAYAEKKLNITEQQRAAWTKFADAARSSLKPTQELCVKFKDAPRPAALPQRLERAEQMMQAHLQQLQTVRPALTDLYAQLTPDQQKQADRMLNQGPGGMGGHMGKHMGGHQGMGPGGMGPGGMGPGGMGPGGMGPGNGPGNGPGRAPQEQPKN
>NC_016622.1|WP_014246527.1|23838_25497_+|tetratricopeptide-repeat-protein
MTDTPVPTLLEAAKRFRSNDLAGAEDVCRAILATDPHNAQALHLLGLVAAHTDHPDYALTLFAQAIAENGNDPSFHNSRGSLLFQQGRAAEAEEAFRAGLAVNPRLPELHGNLGNALKAQSRLDEAADCFRAALDLRAEAPEMHHFLAATLRELGELEEAERHFRTALEQAPDYLDVHYSLAELLSTRGRLAEAEAEFRIVLAAAPRFVPAQVGLAHVLQSLDRAAEAIEVIESAREQAPDHPMVKFTRRLIYSNAVPGWHLPMINDFERNEAYKQSLERAVKPDSLVLEIGTGSGIVAMMAARAGAKKVVTCEVNPILARVAKETVARNGYADRIDVVPRLSTQLTVGEGGDLPEKADVFVSELINIGMLAPRMLSVLQHARTHLVKPGGAIIPRASTVYAMLVETPELARINPVETIDGFDMGSFDVFRSPGYQQIDLGADAHTPLSKPFTALDFDFTRNMPEEGERVIDVTIVTAGTCHGVAFWFDLFMDDEVVYKSESRARTNHWKQAMTFLEKPIALSAGDRLRIVARYDNNQISFGVDGLMGGKGV
>NC_016622.1|WP_014246528.1|25493_26789_+|MFS-transporter
MSEAVASHTPSRRAIASWCLYDWANSAYNTIITTFVFSVYFARGVVGDPVEGTARWGAAMTAAGVAIALLSPVLGAIADRAGRRKPWMALFTGLTVAFTVALWWVRPDPADAAFALACVVIATVSFELANVFYNASLPGLVPPRLLGRVSGWGWGIGYFGGLTCLVLALVGFVQAPAPLFGLFGLQWADWGEQANVRATALLAAVWYGVFALPYFLWVPDEPSTGQGLLRAARDGVATLVATLREARRYRQVMRFLIASAFYRDGINTITAFGGIFAAGTFGMSFEEILVFAIVLNVVAGAGAIGFAWMDDRAGAKPVILIALAGMSFCSVPLLLATDRLWFWVFALGLGLFFGPAQAAGRSMMARLAPPGMAGEMFGLYSLTGRFVGFFGPLLFGLATQAFASQRVGMATVLAFFVIGFGLMLAVREPAR
>NC_016622.1|WP_014246529.1|26894_27131_+|hypothetical-protein
MLHIKDIEAFARINEALNENDGTGQADHAGHDPAGPSHPALVMAMLATGRLPLSSVSNSAVSKPADPLSPWARMLRRS
>NC_016622.1|WP_014246530.1|27134_28226_-|PA0069-family-radical-SAM-protein
MDEIKRPPIKGRGAVSNATGRFERETRVLTDDGWTGYASGGNEALTDPVRTTVSPASAKSIIARNQSPDVAFDQSVNPYQGCEHACIYCFARPTHAYLNLSPGLDFETKLFAKRNAADLLAKELRAKSYVCQPLALGANTDTYQPIERTEGITRRVLEVCRDFNQPVSIITKSALVLRDLDILAPMAADGLASVAISVTTLDRDLARVMEPRASTPPRRLETIRTLAEAGVPVAVLASPMIPALNDHELESILEAAAGAGARAASYILLRLPLEIATLFEEWLRTHAPNRADRVLSLMRQSRDGALYRSGFGTRMKGTGPYAELLRHRFKLACRKHGLGDRSWQLDCSRFRVPPAAGDQLSLL
>NC_016622.1|WP_014246531.1|28447_29746_+|adenosylhomocysteinase
MAAEFTDYKVKDISLANWGRKEITIAETEMPGLMALRSEFGDSKPLAGARIVGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDQAAAAIAAAGIPVFAWKGETEEEFWWCIEQTLRGPDGWTPNMILDDGGDVTQIMHDKYPEMLDGVRGLSEETTTGVHRLYEMMKKGTLKVPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKVAVVAGYGDVGKGSAASLRSQGARVMVTEIDPINALQAAMEGYQVITMDEAAPLGDIFVTATGNVDVITIDHMRAMKDRAIVCNIGHFDSEIQIDALRNLVWEEVKPQVDEVVFPDGKRLIVLAQGRLVNLGCATGHPSFVMSASFTNQVLAQIELWTNAANYENKVYVLPKHLDEKVARLHLDKIGAKLTTLTDKQAEYIGVKAAGPYKPDHYRY
>NC_016622.1|WP_014246532.1|29864_30158_+|type-II-toxin-antitoxin-system-CcdA-family-antitoxin
MSHIGKRDAGYDAQASKQRVDITLNEDLLRLAQGYTDNLSGTIETLLAAWMQDERRKRDDDPAHRRKVVAAWNAFDEKHGRFADEWNRDFMPEDQDR
>NC_016622.1|WP_014246533.1|30157_30472_+|CcdB-family-protein
MAQFDVHRNPGRSRTVIPYLLVVQSDRWEDRTDRVVVPLVLASEISYHDRTLNPAFAVENITVLMNPLQMATIPAKLLGPSITNLDGEHIRVIAALDALVAQGR
>NC_016622.1|WP_085938451.1|30505_31723_-|TIGR03862-family-flavoprotein
MPHTTPDVAIVGAGPAGLMAAEIAAATGLRVAVFDHTPTPARKLLLAGRGGLNLTHSEPLDRFLPRYGAAEPLFRRLLAGFSPDDLRGWAAGLGIETFVGSSGRVFPVQMKASTLVRAWLRQLDGLGVTLHSRHRWTGWDGTGALTFHHGGESVTVAPRATLLALGGASWPRTGSDGGWVPLLEGLGVEVAPLVPSNMGFEVPWSDHLRSRFAGQPVKSVGLSAAGRRLKGEFVITETGIEGGAVYALSAPLRDAIAAEGWATLTLDLLPDMAEAELVKRLRRRGAESLSTFLKKSLSLTGPRAALLREFAPAADLSDPVALARQIKGLSVVLTGLRPIERAISSAGGVRLSELDDRLMLARRPGLFLAGEMLDWEAPTGGYLLQGCFAMGAAAGKGMVEWLGQQ
>NC_016622.1|WP_014246535.1|31818_32085_-|hypothetical-protein
MSTQHKQAMDAVLQAAAHDIVATLQERDITDRHSEEGDLVVLDVAILHAYRIFMRICEENGLEVDAGYFADLAADLAEEVAQDQDYED
>NC_016622.1|WP_014246536.1|32339_33326_-|SH3-domain-containing-protein
MGDAFPKGLRRASALVLLLAAPTGVLAQMPAETPAERFTPPASPIVALPRLTPARPVSPPPNPDVVWEHPPEVPAPLSPVSPQAGPAPAPAPIRTPIPAGRTPEPKPADLQNADQGIAETGQALAAVPPLPQVKPQPEPAGQPAPKEPEKTVAARRTMVATAGIYLRATPDAKGRVLDTVEKGDRVEAFGAPVNGWQRVGRAGKPQGYVTTAYLTEVAADRGEPASPAKPGRYAKADREDRGCALPDDLPRVQSERAQTARLPQGTVARLRAAGNLRVAPVCDAKVLDVLNTGERVTVMEAIGGWYKVGRKGKALGYVGAALLAPAKR

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Crispr_ID: NC_016622_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016622_2

1897485-1902871

Unclear

Consensus_repeat	Method
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	PILER-CR
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CRISPRCasFinder
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CRT

72 spacers

cas2,cas1,csb2gr5,cas7,cas8u1,cas3

The CRISPR arrays of NC_016622_2

>merge|NC_016622|2|1897485-1902871|PILER-CR,CRISPRCasFinder,CRT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCACGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAACGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTGACAAGCCAACTTTGGAATATTGGCCGGCCATTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGACGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCACGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCACACAAGGAAACCAAAGACGCACTGTGGCGGCGGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGATGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCAGCCGGGACATCGACCACGACACCGATAATATCTCCGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGCGCCTTCCCGAGCGGAAACGCCCGGGCCTCATTGAAGCAAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGCTCATGACGATGGACTGCGTGGCGTGGCAAACGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCACCTATGGGTGGAATGGTGGCGGTGAAATAACGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGATCCCATCGGCACGACCGACGATGCGGGGAACTGGTGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGACGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGTCAGCACGACGTCTGACATGACGATCACCTTGGAGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCCAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGATGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGTGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCGGCATTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCGCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTCGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCTCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAAGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGCAGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGGGCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC

>NC_016622|2|2|1897485-1902871|PILER-CR
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGACAAGCCAACTTTGGAATATTGGCCGGCCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACACAAGGAAACCAAAGACGCACTGTGGCGGCGGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGCCGGGACATCGACCACGACACCGATAATATCTCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGC
GCCTTCCCGAGCGGAAACGCCCGGGCCTCATTGAAGC	AAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTCATGACGATGGACTGCGTGGCGTGGCAAACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACCTATGGGTGGAATGGTGGCGGTGAAATAACGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATCCCATCGGCACGACCGACGATGCGGGGAACTGGTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCAGCACGACGTCTGACATGACGATCACCTTGGAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCG
GCATTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC

>NC_016622|2|2|1897485-1902871|CRISPRCasFinder
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGACAAGCCAACTTTGGAATATTGGCCGGCCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACACAAGGAAACCAAAGACGCACTGTGGCGGCGGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGCCGGGACATCGACCACGACACCGATAATATCTCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGC
GCCTTCCCGAGCGGAAACGCCCGGGCCTCATTGAAGC	AAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTCATGACGATGGACTGCGTGGCGTGGCAAACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACCTATGGGTGGAATGGTGGCGGTGAAATAACGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATCCCATCGGCACGACCGACGATGCGGGGAACTGGTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCAGCACGACGTCTGACATGACGATCACCTTGGAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCG
GCATTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC

>NC_016622|2|2|1897485-1902871|CRT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGACAAGCCAACTTTGGAATATTGGCCGGCCATT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACACAAGGAAACCAAAGACGCACTGTGGCGGCGGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGCCGGGACATCGACCACGACACCGATAATATCTCCGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGC
GCCTTCCCGAGCGGAAACGCCCGGGCCTCATTGAAGC	AAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGCTCATGACGATGGACTGCGTGGCGTGGCAAACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CACCTATGGGTGGAATGGTGGCGGTGAAATAACGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATCCCATCGGCACGACCGACGATGCGGGGAACTGGTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGAC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GTCAGCACGACGTCTGACATGACGATCACCTTGGAGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	CAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGAT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGT
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	ACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCG
GCATTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	GCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTC
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	TCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAA
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC	AGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGG
GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016622.1\|WP_014248255.1\|1892498_1893458_+\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl\|CDD\|378223
NC_016622.1\|WP_162488034.1\|1876437_1876590_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_044549907.1\|1910909_1911200_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_014248264.1\|1909888_1910926_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_016622.1\|WP_044549901.1\|1907683_1908040_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_162488036.1\|1906928_1907684_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_044549897.1\|1890175_1892509_+\|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	gnl\|CDD\|274989
NC_016622.1\|WP_162488158.1\|1880967_1884186_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_016622.1\|WP_162488035.1\|1876685_1877333_+\|DUF2285-domain-containing-protein	unknown	unknown	gnl\|CDD\|370806
NC_016622.1\|WP_014248261.1\|1905971_1906625_+\|chromosome-partitioning-protein	unknown	unknown	gnl\|CDD\|349760
NC_016622.1\|WP_014248258.1\|1896958_1897255_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_016622.1\|WP_014248263.1\|1909520_1909892_+\|hypothetical-protein	unknown	unknown	unknown
NC_016622.1\|WP_014248259.1\|1904647_1904899_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_016622.1\|WP_014248257.1\|1895223_1896927_+\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NC_016622.1\|WP_044549904.1\|1908036_1909524_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NC_016622.1\|WP_081505957.1\|1887699_1890189_+\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_016622.1\|WP_014248251.1\|1884224_1886960_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_016622.1\|WP_014248256.1\|1893465_1895196_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|320705
NC_016622.1\|WP_014248260.1\|1904908_1905760_+\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NC_016622.1\|WP_162488159.1\|1911215_1911536_+\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016622.1\|WP_014248255.1\|1892498_1893458_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.13269e-55
NC_016622.1\|WP_014248264.1\|1909888_1910926_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.14998e-49
NC_016622.1\|WP_044549897.1\|1890175_1892509_+\|type-I-U-CRISPR-associated-protein-Csx17	gnl\|CDD\|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	0
NC_016622.1\|WP_162488158.1\|1880967_1884186_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	3.57992e-72
NC_016622.1\|WP_162488035.1\|1876685_1877333_+\|DUF2285-domain-containing-protein	gnl\|CDD\|370806	pfam10074, DUF2285, Uncharacterized conserved protein (DUF2285). This domain, found in various hypothetical bacterial proteins, has no known function.	5.84183e-29
NC_016622.1\|WP_014248261.1\|1905971_1906625_+\|chromosome-partitioning-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.17225e-22
NC_016622.1\|WP_014248258.1\|1896958_1897255_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	2.71966e-21
NC_016622.1\|WP_014248259.1\|1904647_1904899_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00155763
NC_016622.1\|WP_014248257.1\|1895223_1896927_+\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.62159e-113
NC_016622.1\|WP_044549904.1\|1908036_1909524_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	3.97473e-54
NC_016622.1\|WP_081505957.1\|1887699_1890189_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	8.86839e-51
NC_016622.1\|WP_014248251.1\|1884224_1886960_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.97573e-16
NC_016622.1\|WP_014248256.1\|1893465_1895196_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|320705	cd09734, Csb2_I-U, CRISPR/Cas system-associated protein Csb2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Duplicated RAMP domains; also known as GSU0054 family.	1.07938e-29
NC_016622.1\|WP_014248260.1\|1904908_1905760_+\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	1.68565e-116

>NC_016622.1|WP_014248258.1|1896958_1897255_+|CRISPR-associated-endonuclease-Cas2
MAGNERLYIVTYDIGDQKRWRRVFKVMEAYGRWLQFSVFQCRLTPRRRAALGARLDGIIKPSEDHVLIIDIGPADAVDPRVESLGRPFESIKREAVVV
>NC_016622.1|WP_014248257.1|1895223_1896927_+|CRISPR-associated-endonuclease-Cas4/Cas1
MTDQLTLPLPAPPETDPDLLVPARMVNEWVYCPRLAYLEWVEGAWAANADTEEGKRAHARVDAGRGKLPPPEEADTAPPFEVRSIELASDRLGLIAKMDVIEGEDGVLTPIDFKKGKRPHVEGGAYEPERVQLCVQALVLEDNGYRVGEGFLWFAGSRERVPVSFDEELRARTREAAAGLRLAAAARRVPPPLDNSRKCARCSLLPICLPDEVNLFRSGGAPRTPPPAADAALPLYVQQPGARVAKKGDLLIIAVENEPDREVPLGEVSELVLAGPVSLSTPALHALVKEEIPIAWMSSGFWFIATTGARGPRSAHVREGQYAARTDAFRRLLFARDLVRAKLRNQRTILRRNWRGTEAERDHAAETLKRLADRTAKASGLPELLGVEGEGAAVYFRALPALFTDKVKDLPAFSFERRSRRPPADPVNACLSLCYALLTRTCATALEIAGLDPWAGLYHADRPGRPSLALDFMEPLRPILADSTVLTALNNGELAPGDFITAGPGCNLTAGGRRTLIRAFERRLDQEASHPTFGYQISMRRMLHVQARLFARHLLGEIDSYPHYCPR
>NC_016622.1|WP_014248256.1|1893465_1895196_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MLALVFTFPAGRYHATPWGRHVNEADVAWPPEPWRILRALVATWYRKADHAAFPEEALATLIDRLAEEPPDYALPAQVVHAHSRHYMPQANPKDTKLVFDAFARFPASDPIVAEWPRLTLEGDALALLRHLAERIGYLGRAESWAECTVWTETGAWTINCRETSADQSYGLTDETEAVRVIAPLPPAAYAQERARLLGMAQDRVLASWTKPKPPTDKAMAKLIAPTAAILPDRLVGALALDTGDFQNQGWNRPPASRDLLYRCVPLSPLPLSPLPRRNTGRPARTDGDPPKVARFLLAGRPRPRIEDAVKIGELMRLATMARFGWDSDPATGRRLPRAPAVFVGKNADGRPLADDPAHAHAFWLPQDADGDGFIDHVVVYAADGFDARERSALDQVTRLWVREQDRPRRSARGTDEETDESPDIRQEWRLALEGFGMPEDFEDDVPFLGESRHWISATPFLASGHLKAGGHVAEARRLLVRRGIVTADQVDRLKIKERKSIQIKNRVLLPLHFHRFRSGRGEAQHDAAGAFLRITLPEPHRGPLALGYACHFGLGLFVPTEEESDQEKTVLPIPED
>NC_016622.1|WP_014248255.1|1892498_1893458_+|type-I-U-CRISPR-associated-protein-Cas7
MPLDLSLLATAPRLLIKAELRPLQGSRFQPTGFPNLGHAVYAAPEGIGRMILVESAQSMANRLETVCWDEAADDWQAPLAGLPLVKVVDDKGEFVTNSVLEAHRLNSPYILEGKDKSVFTLLKEELAAMEEGRVDLRKLARVVLKLDTNALLHGLFLAKKDLAGGRLRLPRALSAFIEAEDAREAVSGGVKNDIVNPSGDAAKGFGNVPFAREEWVAKHIFAYFNLDLHQIRAFGLGTAVEALLIALALYKIRRFLDGSLRLRTACDLGLVDKPEVTAPKAFVLPALADLEEALPGLIGAVAAEGLFNDPPALTVTWRK
>NC_016622.1|WP_044549897.1|1890175_1892509_+|type-I-U-CRISPR-associated-protein-Csx17
MTGGERHDHALTGCAPIPLAGYLKALGVLRLIAEQADGTASGWWQGETFRLRSRLDRDALVDFFLNRYRPSAVVAPWNGGSGFFDGDNRDGFTPLRNSPAARFSGLRAAMEVCERAVADAALVERPQGEAKLAFVLSLRGQLPDEALNWTDAALALSREELLFPPLLGTGGNDGRLDFTNNFMRRLVSAKTPRGLFDADTGAPRPEAEPMLRAALFGEATDGLTDAAIGQFAPGAAGGPNSTAGFEGAPNLNPWDFVLMIEGALLFAGALTRRNESARQSGASFPFTVKPTGAGWGGVGVEDEDDARAEFWAPLWSRPAGAGEIRQFMAEGRAVLNGRTARDGLEFARAVAMLGTSRGIDAFQRFGFMMRAGKAYLATPLGRRKVTGNVPPTATLIADLEDGHWLDRLRYRLRRGEDGARARALARRLDDALFALTEPDVEKQRKPAVQAVQAVQAVQAALIALGAVARHLAIATKLWEFVPPPPVLTSRWLWMADDSSPEFQVAEALASLGYAPDDVDKAEDAAGKEPAPPMAAHFAPLDLTRPSRHGRAWSGSGRSTEVVWGDGDLTRNLLAVLNRRLIDRTGRERGTDDPLCAATGAPLPAVLAFLGDATFDHARCAALLTGLVWVRPGRRRSPSKSTKVPMPLPYAALKPLFTPADQLHRERQIGKRLRSLLPQDQALPVPPGLVARLSRGDGLAQAVRDTLLRAHASGIASPFLDSRSRIETFAKGGVDPRRLAASLLIPIDDYGLDRVIERAYPQPEHDTDADTETADHAA
>NC_016622.1|WP_081505957.1|1887699_1890189_+|CRISPR-associated-endonuclease-Cas3''
MGDSCQSYEYQRRLALEPWPEVMIAPTGVGKTAAVVLGWLWRRQNAPDDTPLRLVLCLPMRSLVEQTRDRVEDWLKKLGARTDPSLPHPEHGLAVLMGGGEREKQPPAWVQTPERPAILIGTQDMLLSRALMRGYGISRFRWPVDFALLHNDAQWVFDEVQAMGAGLATSTQLQGLRTAMGTARPSRSLWMSATLDPAWLATVDHKAPDRVLRVPHDVPADQDNPDLRRLIDARKHLRPAATRPAGAGAKDRDAYTTALAGEVLEAHRHGTTTLVILNTVARAQAVYGTLKKQMGAAAGDRLLLIHARFRPRERTEQLKRLTGEGAGRDRIVVATQAVEAGIDVSSALLVTELAPWSSLVQRFGRVNRYGECQNGAEIRWIDLSLSKEEDPKGEMALPYAAEDLAAARDRLAGLDDNDAAPAKLSPTDRPPPVRHVLRRKDLLDLFDTDPDLTGFDIDVSPFIRDAKDTDFQVLWRDIPDEATARRQPLPDRDELCSVPIRRAEDLLKGRQGWRLNPQAKGSDSTWMRLDGKPWPGLVVMLDAAQGGYDPDIGLAPEMTKEKVPVLAPPDGPEDTATAPHIESPNDDRDSRQDHAVLLAEHLGNVAAAAERLCADLHRTVAMPAPDHAAVVTAARWHDVGKAHDEFQARMVEPARPPGTLLAKAEKYERAKGRPYFRHELASALAYLDQNGGTASADLVAYLIAAHHGKVRLSLRALPQEKPPADICRFARGIHEGDPLPAVDLGDGSRSEALSLSLRLMELGADEDGDPSWASRTARLLADHRPFRLAWLESLVRIADWRASAAEQEKARQEKAGKAVVGREDGDDGR
>NC_016622.1|WP_014248251.1|1884224_1886960_-|PD-(D/E)XK-nuclease-family-protein
MRILFGWHLDGPSWPESLDGTAASLDTDIVGPAGLIRILETILALGGPEVSPALRIAQYLARLRAVDDGQHFYSRSLAADGWSVARMLLGWRDSLVEAGWDGSVPGGGGRLDTLAEVERAPGALAPGPGDRLRAVTAALEPPRPTCLTELRLATPEELLPEPWRRLLRRLAAGGTAVCPCRLPVPAGNGDLAALGRRLGGFTEGAAWRGDGSLTLLEADDEWLAAEAVAGWLAAAPGDNHAIAIIRGQRTMLLDEACHRLGLPRVGGAGRSRWRAAVQVLPLAFATAWEPVDVHRLMELLTLPQSPIPMGVAEFFAAALQKAPGIGGPVWQEAWRDALGRRRTRLEERGLAERDIARRLAEEERLWRGWLEMPRIAEADGIPAQVAAALCRRVADWAAGRALQGDEMLAVVAAQAGAMAEVVAASGLARIPKPQIDRMLDSVIADGAAVPAGGAEAAPWTVVDEPGQIWGPARAVVWWGFLDGSAGMAAVPWSGAERAALAAAGCLPEAATQALRREAWAWRLPVLNAAERLILVKPRAIAGEPAAAHPLWHEIEPVLHDLTQDRLTHGRGCAVQASALLLADRTPLAGRVVQRAALDGGRPPEPRRLWRVPADAVPMRDRESATSLNRLLGCPFAWTLQYAAGVRPGALRRIPDGSQLVGTLTHAVLAELFTERPSWSAEEAARRAAALFDRLLPVLAAPLLRLGQGLELERARAAVADAARMLAGLIGGAGLTVRGCEVEFQETLAGDMGGGIAGDIVVDGTVDMLLEDETGGPVILDLKWSRTDRHRRQEIAEGRAIQLAVYGRLVGGGVTTSVPAGYFMLAQQRLLFTEPAPFPAHAHIPGSDLPEVWRSAWDSRTRQLDRLRSGEIVAAGIADTGCDGAGPPAIVLTPPCRICDYGRLCGVGSIQP
>NC_016622.1|WP_162488158.1|1880967_1884186_-|UvrD-helicase-domain-containing-protein
MSPIDVVTASAGTGKTYRLATAFRDAVAAGTEPGRILATTFTRKAAAELLERVRQRLIAEGHGDAARDVLTGAIGTVNAVFGCIAAAFALEAGRSPVADVIGEDRMAALFAAAADTVIRRHGSAIEPAAWRLRVEDWRDLVRRVSALARQNAIAPADLAASAARSLDGLLTLLPPPAADGAALDAALGRAVRDAVSAIEGGGEVTVKKTQDAFALLKEAAAALANGRPLAWADWVRLAKLDAGARWKGVAEAVVTAAEAHDRHPRLHADLRALVDGVFSCAAEAMADYAEFKRIQGLVDFVDQEQEALALLRRSDVRSLLAERFELALVDEFQDTSPIQLALFLELAGIVRRSVWVGDAKQAIYGFRGTDPDLIRAVVARVPPATGGWLERLPRSYRSRPGLVAFHNDLFGAAFPPTGIPQDQAIVSECDRSDRPGEPSPLEIWTLEGKNWDKALAALARGVANRLAAEGVDGALRGSDVAVLCRSNERCAAVAATFAAAGLKVAIGRSGLTATPEAGLALAALRYLVDPGDTLAMVELAHLATMPDTAEDAAAGQPDWLETWLAPDAARRAREGSPVLRALDAARDRLLHLTPVEALEVAIAAGSVTDAVLRWGGGAERLGNLDALRGLARAYEDDCRARRAAATAGGLIGFLSDAEKGGEQPPSGDRNAVQVMTYHQSKGLEWPMVVLLDLQGGPEPSAFGLTVEGPAAEDGAAVDPWCPLDGRWLRFWPWPYDKQRARIPLADATDAAPEMAVARRRAHAEAVRLMYVGMTRARDRLILAARPAKAGGLETDWLDALVDARGLPVLALPAGQGAVTVHAAGRPHPATAITIAAPEEDGAAPQPAAVHAVFSLPPAPAAVPDHPPLRLAPSHFGIPAPVVAAAGAPAAIALGDRLPLAGGVDVTRLGEAIHSFLAVDRPDAAPEDRLACAARLLERWGIEPTAAAPLVEAGDRLWRALSRLWPGAGWRTEVPVHGRLGLQRIGGRIDLLVDAADGVVIIDHKAFPGAFDQWAARALAHAPQLSLYRRMVEEATGSPVRGCFIHMPVVGMLLDLTRETGTREMGATCFHAR
>NC_016622.1|WP_162488035.1|1876685_1877333_+|DUF2285-domain-containing-protein
MRRDSSASRPPPMEPAIGGCTVLEDPGKSGAETLVFWRSEVLPALVRLSPAPRTYAGPGTDLDPWWGMSRQAIFHTAEGFHVALAEGPRERRFWIEGKRLPGRGTPLRALIALDGDLDAQVAALRRFYEAVTNPAAPPDLTPYQTRMLMRTLQALDAHLDGASIRQTAEALFGAERVNADWYRDTPLRDQVRYLIRRGRWLMEGGYRELLRRGAL
>NC_016622.1|WP_162488034.1|1876437_1876590_+|hypothetical-protein
MSLALIPPVYAVPAPFFAIGAIANLRRQVTLQPGRNLTLSTQRRHHDGDE
>NC_016622.1|WP_014248259.1|1904647_1904899_+|helix-turn-helix-domain-containing-protein
MDDKTAGLPPRFLRTPEAARFLGLSGRTMEKHRLYGTGPRYRKIGGRVVYAVEDLRSWADQGLRTSTSDPGTGTVRPARPARR
>NC_016622.1|WP_014248260.1|1904908_1905760_+|replication-initiator-protein-A
MGGDFPTGDRQMQLDLFVALPGDMAVRDQQDLMAHPFFSLAKTKRTEPIDYAAGDTRIRVEGTVEHGIATIWDADVLIWAASQLVEARDAGLRTARLLSATPHQILTFTGRGTSLRDYQRLRAALDRLQATTVVTNLRQPDLRRRHRFSWINEWKERTDAAGRPLGLELILPDWFYQGVLADAFVLTIERDYFGLTGGIERWLYRLARKHAGRQAEGWAFDFRHLHAKSGSLARFANFAIDLRTVARRQRLPGYRLAVERRPDGGERLRFAPQTYPQTRGINR
>NC_016622.1|WP_014248261.1|1905971_1906625_+|chromosome-partitioning-protein
MIVALVNQTRGAGRTTLAVHLAGELALQGRRVAVLDTDLRSGALEWADCRRRNGLPALFETIGIASPDLRCGVWGLHAGFDHVIIDTPAASTTALRAALLAADTVLVPTHPERDAVGRCAATLQLVVEALAAEPALTASMVLTQAPAGLEIEPGTEMTVCGLRLPVAAAVVGERMSFAMSRSTGLLVQEIDFVGPAEVDVRRLAGEVFGHGRAGETG
>NC_016622.1|WP_162488036.1|1906928_1907684_+|hypothetical-protein
MGWSMGRRFGLFGGILDNDGFKARMKALADRGRRLARAYTRRPMQKVRVKGAPPQAGPHARPVMVKVLYHDRARGAYPNTVSALANYLAKEGPLFDRDRLGIDKQDIVDAWSADRRVFHLIVSPNDGHRIDDMVSYGRDVVAAWERRVGPLEWVASVERKPDMAHPDGNQHLHIMVRGVQHDRDLHLDPDVVSRWLRHYAVEVTTDRLGYMTERERRDFERQLVEMQRLREQQRDREDGRDDLRDLGGREL
>NC_016622.1|WP_044549901.1|1907683_1908040_+|hypothetical-protein
MPYLLRFGALLLVWFAAVFAITELTGWLFAWPAVFGGWRAGPIALYWPGQFLGWRGLLAPGHRWIVDGAAVVSGLCALALAARVVLDLRGTRRPGFGAGRWADRAAVRRSGLLDGGRR
>NC_016622.1|WP_044549904.1|1908036_1909524_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MTDRSSVILGAWGRDLLHERTMQPVLVIGPTGSGKTTTTVHPTLLAAWDESAVVWDFKGSVTEDTSRARTRFGDVIVLDLARAGGPRYNPLVAVRPEPYLVPDCQHAARVLTEGEQEGHWRNAAFSYLTGVFVYLLTSAADGEKSLAGARRHILLGDDGLKLMLAEGVHPTAQRAAQELWDKSLALAEERGSGEGEGKGRPGGGSTPPDKSLHYRKSVYVTASVLLAEFEDSVLEEQTAASDFSIADLVAGERPVTLYIVARPLDARRLRRVFKLILTQMVDFLTIDRALADDGRARRWRLLVVLDEFLQFHLREAAEWIKYVREYGIRLLLLAQSLWEVEEEYGRGLTANCRLVVFRPNSSDEAERISRMVGEAIEEVPTRSTSKGLFDLFPTVSRGVRVDRRPVMPMHEALEMGGDELIVFGYGKPIRATRLHPYADPRWRPLYGRAAAAWTSNPDANRWFGAAGPAPEGRVPMVPDTPAAPRRSGKPPRVWT
>NC_016622.1|WP_014248263.1|1909520_1909892_+|hypothetical-protein
MTDTPDTAGTRPVSARVPALLADQIALVQARQGLRTLSDAVIHVLDKGLDAIANERAKTERLEATVARIDDLLITVVAVLNLVHDLDPAAVAETKAAVQQQLGHPRRTVPSVRDGFHPKEAGS
>NC_016622.1|WP_014248264.1|1909888_1910926_+|CpaF-family-protein
MTELVAIDGPARREMLLVALRRLMDGLFGDLLSREDVANVLVLPPLRGQGTCRVLVKNGPSPEFVREVDPDQVRRFLAYVAGFARKELRRDRPTLDVTLPESGERIHADVEPVTTGPACSIRKPYRGRITLDDWVRSGAATTVQARTLRRLIDGRRTVVIAGDVDTGKTTLLRACLEEAAFRTGLPAVLQDPYEFEPPCPHAYAMVADPWADPPVTLETLVANALRVPMTHLVLGEVRRAEARQMVVGWTTGHPGLCTVHAGSAWDALDRIAQMVGLGGVVMDALQMRWIAKAVHAVVHLARRPDGRRFVNEIVRVERFDPERGFVLHPLGAGDPDDGGEHAEQR
>NC_016622.1|WP_044549907.1|1910909_1911200_+|hypothetical-protein
MRSNGNARRATALALMLAWTAMPAHAQVIANLGAELLSWQAVFDTNFVPIAVTAGLLLALVAAMFSRIAGVVVFVFTVAGAAAYGARDAIIALAGG
>NC_016622.1|WP_162488159.1|1911215_1911536_+|VirB3-family-type-IV-secretion-system-protein
MPSPPIPDGWEKPVRRTSVRPTKMPLGVPMELLAIAVWLAAELWLALGAIPQAVAGFLLVFLTARYLTRRDPWWLEIVRQTAAAWLLRALRTRGRSLSFSSYRAPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016622_2	2.3\|1897669\|39\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1897669-1897707	39	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	45647-45685	1	0.974
NC_016622_1	1.9\|21379\|38\|NC_016622\|PILER-CR	21379-21416	38	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	5728-5765	2	0.947
NC_016622_1	1.43\|21380\|37\|NC_016622\|CRISPRCasFinder,CRT	21380-21416	37	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	5728-5764	2	0.946
NC_016622_2	2.3\|1897669\|39\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1897669-1897707	39	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	45644-45682	3	0.923
NC_016622_1	1.40\|21158\|37\|NC_016622\|CRISPRCasFinder,CRT	21158-21194	37	NC_047861	Bordetella phage vB_BbrM_PHB04, complete genome	29113-29149	5	0.865
NC_016622_2	2.64\|1902202\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1902202-1902238	37	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	786415-786451	5	0.865
NC_016622_1	1.6\|21157\|38\|NC_016622\|PILER-CR	21157-21194	38	NC_047861	Bordetella phage vB_BbrM_PHB04, complete genome	29112-29149	6	0.842
NC_016622_1	1.46\|21604\|38\|NC_016622\|CRISPRCasFinder,CRT	21604-21641	38	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	602809-602846	6	0.842
NC_016622_1	1.46\|21604\|38\|NC_016622\|CRISPRCasFinder,CRT	21604-21641	38	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	434781-434818	6	0.842
NC_016622_1	1.46\|21604\|38\|NC_016622\|CRISPRCasFinder,CRT	21604-21641	38	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	669947-669984	6	0.842
NC_016622_1	1.46\|21604\|38\|NC_016622\|CRISPRCasFinder,CRT	21604-21641	38	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	263382-263419	6	0.842
NC_016622_1	1.46\|21604\|38\|NC_016622\|CRISPRCasFinder,CRT	21604-21641	38	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	100611-100648	6	0.842
NC_016622_1	1.24\|22506\|40\|NC_016622\|PILER-CR	22506-22545	40	MN096362	Arthrobacter phage Vibaki, complete genome	14919-14958	7	0.825
NC_016622_1	1.58\|22507\|39\|NC_016622\|CRISPRCasFinder,CRT	22507-22545	39	MN096362	Arthrobacter phage Vibaki, complete genome	14920-14958	7	0.821
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	51350-51385	7	0.806
NC_016622_2	2.54\|1901470\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901470-1901505	36	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	219289-219324	7	0.806
NC_016622_2	2.54\|1901470\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901470-1901505	36	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	646664-646699	7	0.806
NC_016622_1	1.33\|23178\|37\|NC_016622\|PILER-CR	23178-23214	37	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	25924-25960	8	0.784
NC_016622_1	1.47\|21679\|35\|NC_016622\|CRISPRCasFinder,CRT	21679-21713	35	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	205300-205334	8	0.771
NC_016622_1	1.67\|23179\|36\|NC_016622\|CRISPRCasFinder,CRT	23179-23214	36	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	25925-25960	8	0.778
NC_016622_2	2.8\|1898049\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1898049-1898084	36	NC_021347	Rhodococcus phage E3, complete genome	23366-23401	8	0.778
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	LR606151	Rhizobium sp. Q54 genome assembly, plasmid: 8	80418-80454	8	0.784
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	NZ_CP049243	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed2, complete sequence	27179-27215	8	0.784
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	181316-181352	8	0.784
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	NZ_LR723680	Arsenite-oxidising bacterium NT-25 plasmid 4	52030-52066	8	0.784
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	43201-43237	8	0.784
NC_016622_2	2.25\|1899314\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899314-1899350	37	NZ_CP049251	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence	158221-158257	8	0.784
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP016284	Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_2, complete sequence	55549-55584	8	0.778
NC_016622_2	2.45\|1900804\|37\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1900804-1900840	37	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	659306-659342	8	0.784
NC_016622_1	1.13\|21678\|36\|NC_016622\|PILER-CR	21678-21713	36	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	205299-205334	9	0.75
NC_016622_1	1.38\|21008\|36\|NC_016622\|CRISPRCasFinder,CRT	21008-21043	36	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	106815-106850	9	0.75
NC_016622_1	1.38\|21008\|36\|NC_016622\|CRISPRCasFinder,CRT	21008-21043	36	NZ_LN868941	Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence	67377-67412	9	0.75
NC_016622_1	1.38\|21008\|36\|NC_016622\|CRISPRCasFinder,CRT	21008-21043	36	NZ_CP031419	Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence	9258-9293	9	0.75
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP047055	Clavibacter michiganensis subsp. michiganensis strain VL527 plasmid pVL1, complete sequence	26789-26824	9	0.75
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	39072-39107	9	0.75
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP047052	Clavibacter michiganensis subsp. michiganensis strain MSF322 plasmid pMSF2, complete sequence	8580-8615	9	0.75
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	183-218	9	0.75
NC_016622_2	2.48\|1901024\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901024-1901059	36	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	556807-556842	9	0.75
NC_016622_2	2.48\|1901024\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901024-1901059	36	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	150340-150375	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MN234205	Mycobacterium phage Veliki, complete genome	26360-26395	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	JF704105	Mycobacterium phage Adephagia, complete sequence	26323-26358	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	KX585253	Mycobacterium phage HedwigODU, complete genome	26326-26361	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MN234230	Mycobacterium phage Atiba, complete genome	26286-26321	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MF140430	Mycobacterium phage Tachez, complete genome	26286-26321	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MF140428	Mycobacterium phage Slimphazie, complete genome	26324-26359	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	KJ567045	Mycobacterium phage Emerson, complete genome	26317-26352	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MN234231	Mycobacterium phage Rapunzel97, complete genome	26324-26359	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	NC_023747	Mycobacterium phage BarrelRoll, complete genome	26309-26344	9	0.75
NC_016622_2	2.60\|1901910\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1901910-1901945	36	MH051246	Mycobacterium phage ActinUp, complete genome	26326-26361	9	0.75
NC_016622_1	1.4\|21007\|37\|NC_016622\|PILER-CR	21007-21043	37	NZ_LN868941	Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence	67377-67413	10	0.73
NC_016622_1	1.4\|21007\|37\|NC_016622\|PILER-CR	21007-21043	37	NZ_CP031419	Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence	9258-9294	10	0.73
NC_016622_1	1.4\|21007\|37\|NC_016622\|PILER-CR	21007-21043	37	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	106814-106850	10	0.73
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP048048	Clavibacter michiganensis subsp. capsici strain 1106 plasmid pCM2_1106, complete sequence	37476-37511	10	0.722
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP012575	Clavibacter michiganensis subsp. capsici strain PF008 plasmid pCM2, complete sequence	122961-122996	10	0.722
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	CP048046	Clavibacter michiganensis subsp. capsici strain 1207 plasmid pCM2_1207, complete sequence	122471-122506	10	0.722
NC_016622_2	2.26\|1899388\|36\|NC_016622\|PILER-CR,CRISPRCasFinder,CRT	1899388-1899423	36	NZ_CP048050	Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence	67041-67076	10	0.722

1. spacer 2.3|1897669|39|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 1, identity: 0.974

ttacccggcgcggggccggtgccccggccccgcgccgcc	CRISPR spacer
tgacccggcgcggggccggtgccccggccccgcgccgcc	Protospacer
* *************************************

2. spacer 1.9|21379|38|NC_016622|PILER-CR matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.947

caaacccaggcagcgctcgatcatgccggcgaactggt	CRISPR spacer
cagccccaggcagcgctcgatcatgccggcgaactggt	Protospacer
**. **********************************

3. spacer 1.43|21380|37|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.946

aaacccaggcagcgctcgatcatgccggcgaactggt	CRISPR spacer
agccccaggcagcgctcgatcatgccggcgaactggt	Protospacer
*. **********************************

4. spacer 2.3|1897669|39|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.923

ttacccggcgcggggccggtgccccggccccgcgccgcc---	CRISPR spacer
---cccggcgcggggccggtgccccggccccgcgccgcctgc	Protospacer
   ************************************

5. spacer 1.40|21158|37|NC_016622|CRISPRCasFinder,CRT matches to NC_047861 (Bordetella phage vB_BbrM_PHB04, complete genome) position: , mismatch: 5, identity: 0.865

agccgcttgtcgccagcattgcccagcttgtcgccga	CRISPR spacer
cggcgcttgtcgccggcgttgcccagcttgtcgccgc	Protospacer
 * ***********.**.******************

6. spacer 2.64|1902202|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.865

caggtcgccggtcagctgctcgtaggtcacgcccatg	CRISPR spacer
caggtcgccggtcagcagctcgtagggcacgccaagc	Protospacer
**************** ********* ****** *

7. spacer 1.6|21157|38|NC_016622|PILER-CR matches to NC_047861 (Bordetella phage vB_BbrM_PHB04, complete genome) position: , mismatch: 6, identity: 0.842

cagccgcttgtcgccagcattgcccagcttgtcgccga	CRISPR spacer
gcggcgcttgtcgccggcgttgcccagcttgtcgccgc	Protospacer
  * ***********.**.******************

8. spacer 1.46|21604|38|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.842

cggtcggcgat---ggtttcggtcagcgcctccacctccgc	CRISPR spacer
---gcggcgatgtaggcttcggtcatcgcctccacctccgc	Protospacer
    *******   **.******** ***************

9. spacer 1.46|21604|38|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.842

cggtcggcgat---ggtttcggtcagcgcctccacctccgc	CRISPR spacer
---gcggcgatgtaggcttcggtcatcgcctccacctccgc	Protospacer
    *******   **.******** ***************

10. spacer 1.46|21604|38|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.842

cggtcggcgat---ggtttcggtcagcgcctccacctccgc	CRISPR spacer
---gcggcgatgtaggcttcggtcatcgcctccacctccgc	Protospacer
    *******   **.******** ***************

11. spacer 1.46|21604|38|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.842

cggtcggcgat---ggtttcggtcagcgcctccacctccgc	CRISPR spacer
---gcggcgatgtaggcttcggtcatcgcctccacctccgc	Protospacer
    *******   **.******** ***************

12. spacer 1.46|21604|38|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.842

cggtcggcgat---ggtttcggtcagcgcctccacctccgc	CRISPR spacer
---gcggcgatgtaggcttcggtcatcgcctccacctccgc	Protospacer
    *******   **.******** ***************

13. spacer 1.24|22506|40|NC_016622|PILER-CR matches to MN096362 (Arthrobacter phage Vibaki, complete genome) position: , mismatch: 7, identity: 0.825

caccatcggcggcgcggtcctgaaggcgggggccggcctc	CRISPR spacer
caccatcggcggcgcggtactgaaggcggcgggctggggc	Protospacer
****************** ********** ** * *   *

14. spacer 1.58|22507|39|NC_016622|CRISPRCasFinder,CRT matches to MN096362 (Arthrobacter phage Vibaki, complete genome) position: , mismatch: 7, identity: 0.821

accatcggcggcgcggtcctgaaggcgggggccggcctc	CRISPR spacer
accatcggcggcgcggtactgaaggcggcgggctggggc	Protospacer
***************** ********** ** * *   *

15. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
catcgtccgcgccggacagcgccgcaccctcgccgc	Protospacer
*. *..* ******* ************ *******

16. spacer 2.54|1901470|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 7, identity: 0.806

ggcctgtcgatcgacgccgagggcaaggccaagacg	CRISPR spacer
gtctcgcggatcgaggccgagggcaaggccaaggcg	Protospacer
* *..*. ****** ******************.**

17. spacer 2.54|1901470|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.806

ggcctgtcgatcgacgccgagggcaaggccaagacg	CRISPR spacer
ggcctggcgatcgacgccgagggcgagcacatggcc	Protospacer
****** *****************.**  ** *.*

18. spacer 1.33|23178|37|NC_016622|PILER-CR matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.784

ccgagcgtca-acgggagatcgttcggcggctcgaccg	CRISPR spacer
-ccggcatcgcgcgggagatcgcccggcggctcgaccg	Protospacer
 * .**.**. .**********..**************

19. spacer 1.47|21679|35|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

gactgcagggtgagcgcatcccagatgacgatgcc	CRISPR spacer
cgcttccctgtgagcgcgtcccagaggacgatgcc	Protospacer
 .** *   ********.******* *********

20. spacer 1.67|23179|36|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.778

cgagcgtca-acgggagatcgttcggcggctcgaccg	CRISPR spacer
-cggcatcgcgcgggagatcgcccggcggctcgaccg	Protospacer
  .**.**. .**********..**************

21. spacer 2.8|1898049|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_021347 (Rhodococcus phage E3, complete genome) position: , mismatch: 8, identity: 0.778

-gtcacgcgaatgacgcccgtccagtcggtggagcag	CRISPR spacer
taccaca-agatgacgcccgtcgagtccgtggagcag	Protospacer
 ..***. ..************ **** *********

22. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to LR606151 (Rhizobium sp. Q54 genome assembly, plasmid: 8) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

23. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049243 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

24. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

25. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723680 (Arsenite-oxidising bacterium NT-25 plasmid 4) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

26. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

27. spacer 2.25|1899314|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049251 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.784

atgtctgacagccagcaccgttcggccgacgtcgcca	CRISPR spacer
ctgtctgacggcctgcaccgttcggccgagattggcg	Protospacer
 ********.*** *************** .*.* *.

28. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016284 (Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_2, complete sequence) position: , mismatch: 8, identity: 0.778

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
catcgtgcgagccggtcagcgccgcaccctcgccgc	Protospacer
*. *..  * ****************** *******

29. spacer 2.45|1900804|37|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

gcccacatgaacgccctgcccgttgcggccaaggcca	CRISPR spacer
ccctccatgaacgcccagcccgtggcggccaggccga	Protospacer
 **. *********** ****** *******.* * *

30. spacer 1.13|21678|36|NC_016622|PILER-CR matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

cgactgcagggtgagcgcatcccagatgacgatgcc	CRISPR spacer
gcgcttccctgtgagcgcgtcccagaggacgatgcc	Protospacer
  .** *   ********.******* *********

31. spacer 1.38|21008|36|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

cgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
cggggaggaaagcgccgcgatctacgatcgcctgct	Protospacer
** ************ ***********..*    *

32. spacer 1.38|21008|36|NC_016622|CRISPRCasFinder,CRT matches to NZ_LN868941 (Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence) position: , mismatch: 9, identity: 0.75

cgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
cggggaggaaagcgccgcgatctacgatcgtctgct	Protospacer
** ************ ***********..*    *

33. spacer 1.38|21008|36|NC_016622|CRISPRCasFinder,CRT matches to NZ_CP031419 (Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

cgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
cggggaggaaagcgccgcgatctacgatcgtctgct	Protospacer
** ************ ***********..*    *

34. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047055 (Clavibacter michiganensis subsp. michiganensis strain VL527 plasmid pVL1, complete sequence) position: , mismatch: 9, identity: 0.75

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gctcgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   *..* * ***** ************ *******

35. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.75

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
catcgtgcgagcaggtcagcgccgcaccctcgccgc	Protospacer
*. *..  * ** *************** *******

36. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047052 (Clavibacter michiganensis subsp. michiganensis strain MSF322 plasmid pMSF2, complete sequence) position: , mismatch: 9, identity: 0.75

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gctcgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   *..* * ***** ************ *******

37. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_009479 (Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence) position: , mismatch: 9, identity: 0.75

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gctcgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   *..* * ***** ************ *******

38. spacer 2.48|1901024|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

gtggatcagggtggcggcttcgtcgttgcagtaggc	CRISPR spacer
ggcgatcagggcggcggcttcctcgttgccggtctc	Protospacer
*  ********.********* ******* *    *

39. spacer 2.48|1901024|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.75

gtggatcagggtggcggcttcgtcgttgcagtaggc	CRISPR spacer
ggcgatcagggcggcggcttcctcgttgccggtctc	Protospacer
*  ********.********* ******* *    *

40. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MN234205 (Mycobacterium phage Veliki, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

41. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to JF704105 (Mycobacterium phage Adephagia, complete sequence) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

42. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to KX585253 (Mycobacterium phage HedwigODU, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

43. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MN234230 (Mycobacterium phage Atiba, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

44. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MF140430 (Mycobacterium phage Tachez, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

45. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MF140428 (Mycobacterium phage Slimphazie, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

46. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to KJ567045 (Mycobacterium phage Emerson, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

47. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MN234231 (Mycobacterium phage Rapunzel97, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

48. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NC_023747 (Mycobacterium phage BarrelRoll, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

49. spacer 2.60|1901910|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to MH051246 (Mycobacterium phage ActinUp, complete genome) position: , mismatch: 9, identity: 0.75

aagcaccatccgcgccggggccgggtcgaccgcttt	CRISPR spacer
cgccaccttgcgcgccggggccgggtcgacctcggc	Protospacer
 . **** * ********************* *  .

50. spacer 1.4|21007|37|NC_016622|PILER-CR matches to NZ_LN868941 (Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.73

ccgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
gcggggaggaaagcgccgcgatctacgatcgtctgct	Protospacer
 ** ************ ***********..*    *

51. spacer 1.4|21007|37|NC_016622|PILER-CR matches to NZ_CP031419 (Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

ccgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
gcggggaggaaagcgccgcgatctacgatcgtctgct	Protospacer
 ** ************ ***********..*    *

52. spacer 1.4|21007|37|NC_016622|PILER-CR matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

ccgcggaggaaagcgcggcgatctacgactggaaccg	CRISPR spacer
gcggggaggaaagcgccgcgatctacgatcgcctgct	Protospacer
 ** ************ ***********..*    *

53. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048048 (Clavibacter michiganensis subsp. capsici strain 1106 plasmid pCM2_1106, complete sequence) position: , mismatch: 10, identity: 0.722

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gcttgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   ...* * ***** ************ *******

54. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012575 (Clavibacter michiganensis subsp. capsici strain PF008 plasmid pCM2, complete sequence) position: , mismatch: 10, identity: 0.722

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gcttgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   ...* * ***** ************ *******

55. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to CP048046 (Clavibacter michiganensis subsp. capsici strain 1207 plasmid pCM2_1207, complete sequence) position: , mismatch: 10, identity: 0.722

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gcttgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   ...* * ***** ************ *******

56. spacer 2.26|1899388|36|NC_016622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048050 (Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence) position: , mismatch: 10, identity: 0.722

cggcaccggcgccggtcagcgccgcaccatcgccgc	CRISPR spacer
gcttgtccgggccggacagcgccgcaccctcgccgc	Protospacer
   ...* * ***** ************ *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1669492 : 1699094

Pseudoalteromonas_phage(16.67%)

portal,protease,head,terminase,integrase

attL 1658790:1658807|attR 1702829:1702846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1658790:1658807	attL	NA	NA	NA	NA
WP_162488015.1\|1669492_1671397_-\|head	Mu-like prophage major head subunit gpT family protein	A0A076G7Y9	Pseudoalteromonas_phage	3.8e-67	30.8
WP_014248045.1\|1671389_1672877_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.9e-91	39.8
WP_014248046.1\|1672879_1673095_-	hypothetical protein	NA	NA	NA	NA
WP_014248047.1\|1673098_1675048_-\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	2.6e-95	36.3
WP_014248048.1\|1675034_1675532_-\|terminase	phage terminase small subunit	A0A1I9KFT4	Aeromonas_phage	6.4e-06	45.0
WP_162488016.1\|1675801_1675960_-	hypothetical protein	NA	NA	NA	NA
WP_014248049.1\|1675962_1676193_-	hypothetical protein	NA	NA	NA	NA
WP_014248050.1\|1676206_1676854_-	hypothetical protein	NA	NA	NA	NA
WP_014248051.1\|1676855_1677155_-	hypothetical protein	NA	NA	NA	NA
WP_044549846.1\|1677468_1678137_-	hypothetical protein	NA	NA	NA	NA
WP_014248053.1\|1678139_1678463_-	hypothetical protein	NA	NA	NA	NA
WP_014248054.1\|1678459_1679464_-	hypothetical protein	I3PUZ7	Vibrio_phage	3.5e-35	61.4
WP_014248055.1\|1679467_1680901_-	AAA family ATPase	A0A1P8VVQ6	Streptococcus_phage	7.9e-65	36.4
WP_014248056.1\|1680897_1681107_-	hypothetical protein	NA	NA	NA	NA
WP_044549848.1\|1681099_1681381_-	hypothetical protein	NA	NA	NA	NA
WP_048816511.1\|1681377_1681602_-	hypothetical protein	NA	NA	NA	NA
WP_162488017.1\|1681667_1682135_-	hypothetical protein	NA	NA	NA	NA
WP_162488018.1\|1682182_1682422_-	hypothetical protein	NA	NA	NA	NA
WP_162488019.1\|1682424_1682619_-	hypothetical protein	NA	NA	NA	NA
WP_162488020.1\|1682755_1683616_+	hypothetical protein	NA	NA	NA	NA
WP_014248063.1\|1684058_1684313_+	BrnT family toxin	NA	NA	NA	NA
WP_014248064.1\|1684309_1684618_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_014248065.1\|1684668_1684926_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014248066.1\|1684999_1686118_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014248067.1\|1686444_1686600_-	hypothetical protein	NA	NA	NA	NA
WP_014248068.1\|1686670_1686805_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_014248069.1\|1687009_1688155_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012974451.1\|1688342_1688762_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_014248070.1\|1688951_1689377_-	flagellar assembly protein FliX	NA	NA	NA	NA
WP_014248071.1\|1689607_1690750_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_014248073.1\|1691071_1691581_+	hypothetical protein	NA	NA	NA	NA
WP_014248074.1\|1691894_1693727_+	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_014248075.1\|1693793_1694537_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA
WP_044549858.1\|1694727_1695054_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_014248077.1\|1695111_1695735_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014248078.1\|1695883_1696327_+	MaoC family dehydratase	NA	NA	NA	NA
WP_014248079.1\|1696429_1697518_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_014248080.1\|1698350_1699094_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
1702829:1702846	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2445436 : 2457880

Citrobacter_phage(12.5%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014248766.1\|2445436_2446957_-\|terminase	phage terminase large subunit	W6PP90	Citrobacter_phage	3.1e-27	26.0
WP_014248767.1\|2446953_2448984_-	hypothetical protein	E5AGC7	Erwinia_phage	1.1e-11	41.5
WP_048816486.1\|2449017_2449803_-	hypothetical protein	NA	NA	NA	NA
WP_044550065.1\|2449823_2451719_-	hypothetical protein	A0A0F7L404	uncultured_marine_virus	5.5e-82	31.1
WP_014248770.1\|2451732_2452302_-	hypothetical protein	Q6J1R6	Burkholderia_virus	1.1e-12	31.2
WP_014248771.1\|2452380_2452653_-	hypothetical protein	NA	NA	NA	NA
WP_014248772.1\|2452845_2453367_-\|tail	tail fiber protein	V5YTB8	Pseudomonas_phage	4.8e-28	56.9
WP_014248773.1\|2453613_2454432_-	hypothetical protein	A0A1B1IVM8	uncultured_Mediterranean_phage	9.0e-74	51.5
WP_014248774.1\|2454721_2454946_-	hypothetical protein	NA	NA	NA	NA
WP_044550067.1\|2454942_2455365_-	transcriptional repressor	NA	NA	NA	NA
WP_014248776.1\|2455507_2456062_+	superoxide dismutase family protein	Q9YMI3	Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus	7.1e-14	39.3
WP_014248778.1\|2456359_2457880_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.7e-54	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_016623

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016623_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016623_1

312012-312143

Orphan

Consensus_repeat	Method
CCACCGTCCAGGCTGTCGTCGCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_016623_1

>merge|NC_016623|1|312012-312143|CRISPRCasFinder
CCACCGTCGATGGTGTCGTTGCCGGAACCACCGGCCAGCAGGTCGTCGCCGGTTCCACCGTCCAGGCTGTCGTCGCCCAGCCCGCCAATCAGGGTATCCTTGCCGGCGCCGCCGAACAGGGTGTCGTTGCCG

>NC_016623|1|1|312012-312143|CRISPRCasFinder
CCACCGTCGATGGTGTCGTTGCCG	GAACCACCGGCCAGCAGGTCGTCGCCGGTT
CCACCGTCCAGGCTGTCGTCGCCC	AGCCCGCCAATCAGGGTATCCTTGCCGGCG
CCGCCGAACAGGGTGTCGTTGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016623.1\|WP_014249577.1\|303351_303831_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_016623.1\|WP_014249584.1\|330774_331827_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_016623.1\|WP_014249585.1\|331983_332568_-\|hypothetical-protein	unknown	unknown	unknown
NC_016623.1\|WP_014249583.1\|327584_330770_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_016623.1\|WP_044552832.1\|319962_323934_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274550
NC_016623.1\|WP_014249566.1\|288809_289628_+\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
NC_016623.1\|WP_014249569.1\|293140_294205_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NC_016623.1\|WP_014249572.1\|296432_299951_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_016623.1\|WP_162488388.1\|294241_294532_-\|hypothetical-protein	unknown	unknown	unknown
NC_016623.1\|WP_014249571.1\|294609_296130_-\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NC_016623.1\|WP_044552826.1\|300817_302104_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NC_016623.1\|WP_014249588.1\|336571_337321_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NC_016623.1\|WP_014249580.1\|323979_325305_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_016623.1\|WP_014249586.1\|332680_335596_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_016623.1\|WP_014249576.1\|302395_303064_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_016623.1\|WP_044552838.1\|335700_336453_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_016623.1\|WP_014249582.1\|326375_327560_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_016623.1\|WP_044552835.1\|325517_326345_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NC_016623.1\|WP_014249567.1\|289746_291300_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675
NC_016623.1\|WP_162488387.1\|291477_293013_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NC_016623.1\|WP_014249577.1\|303351_303831_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.90048e-13
NC_016623.1\|WP_014249584.1\|330774_331827_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.7785e-48
NC_016623.1\|WP_014249586.1\|332680_335596_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_016623.1\|WP_014249583.1\|327584_330770_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_016623.1\|WP_044552832.1\|319962_323934_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.71888e-133
NC_016623.1\|WP_014249566.1\|288809_289628_+\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	8.44764e-120
NC_016623.1\|WP_014249569.1\|293140_294205_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.23266e-111
NC_016623.1\|WP_014249572.1\|296432_299951_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_016623.1\|WP_014249571.1\|294609_296130_-\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NC_016623.1\|WP_044552826.1\|300817_302104_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.17315e-85
NC_016623.1\|WP_014249588.1\|336571_337321_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.63395e-12
NC_016623.1\|WP_014249580.1\|323979_325305_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.42278e-108
NC_016623.1\|WP_014249576.1\|302395_303064_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.45324e-47
NC_016623.1\|WP_044552838.1\|335700_336453_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.08462e-60
NC_016623.1\|WP_014249582.1\|326375_327560_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.0326e-75
NC_016623.1\|WP_044552835.1\|325517_326345_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	7.94539e-56
NC_016623.1\|WP_014249567.1\|289746_291300_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	8.77978e-41
NC_016623.1\|WP_162488387.1\|291477_293013_-\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.53191e-29

>NC_016623.1|WP_014249577.1|303351_303831_+|MarR-family-transcriptional-regulator
MLETPRGDGWTADDDLVTLLDHVSRLVYGIGFADGLFPAQWVALRYFHDSPEPARTLTALARFQRIHLAPVSRTVSTLVDKGLLARRPHPGFKRGWLFDLTEEGRALLDRDPLRHSLGPPIAGLAEDERAMLGRLMKRIIAHMQAEPEAEGRAERPPVA
>NC_016623.1|WP_014249576.1|302395_303064_-|HAD-family-hydrolase
MTNAFLFDLDGTLTDTVYQHVLAWREALDEEGIALSVWRIHRKIGMSGGLFTNMLLRETGLAIDQDLLDRLRRRHADAYKRLAAGVVPLPGARDLLDALTGMGIPWAIATSGRMETARPALEKLGVDPGRAAVVTRDEVQYAKPDPDLFLAAAARIGVDIASAFVVGDSIWDMIAAKRARALGIGLLSGGYGREELERSGALRVYEDPADMLTHLDEVGGRR
>NC_016623.1|WP_044552826.1|300817_302104_+|MFS-transporter
MKKIRGLRWQILALMMLGTVVNYIDRNTLGILAPTLKEQLHFTTEQYSFIVSAFQLCYSLMQPIAGYITDLIGLKLGYAMFAFVWGTAAAMHALAGGWQSMAFFRGLLGISEAAAMPSGVKTSTLWFPAKERSIATGWFNTGSSIGAMVAPPFVIWLSLTYGWQEAFLVTGLLGIGMSALWFMLYRNPENHPRLTKEEHAYILEGQEHVDLPKPSVKRVLGKGKFWSIAAARFLTEPAWQTFSFWIPLYMVTTRGMDIKQFALFAWLPFLFGDLGCILSGYLSPFFVKRFRMSLVNSRIAGVGIGAVCMVGPALIGFSASPITAIFLFSLGAFAHQMLSSLLYALVTDTFEKQDVATATGFGGMAGYMGGMIFSLIIGQLATTIGYEPLFACLTVFDLTAFVIVALVLGERGKNAAPSVPSPATGTAD
>NC_016623.1|WP_014249572.1|296432_299951_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MDGNEAAASVAYRASDVIAIYPITPSSPMGEFADEWSAARRPNLWGSVPDVVEMQSEGGAAGAVHGALQAGALATTFTASQGLLLMIPNMYKIAGELTPFCMHVAARTLATHALSIFGDHSDVMACRQTGFAMLASADVQEAHDMALVAHAATLRARVPFLHFFDGFRTSHEFNCVETLTDEDLRALIDDACVDAHRRRGLTPDHPVVRGTAQNPDVFFQAREAANPYYDACPAIVQEMMDQLATRTGRAYRLFDYAGHPQAERVVVVMGSGAETCAGTVSRLVAEGERVGCLTVRLFRPFAIADFVSALPPSVRRIAVLDRTKEPGAVADPLYLDVVAALAESRAADPALAEPMVIAGRYGLSSKDFTPAMAKAVFDELKRDRPKRRFTVGITDDVTHHSIPWDPAWGMEEPGVSRAVFFGLGADGTVGANKNSIKIIQAHSGSHAQAYFVYDSRKSGSTTVSHLRFSKDPIRAPYLIGQAQFVACHHLPLMERVEVVEMAAPGATVLLNAPGTPQQVWDALPAEVQRICIERKLSLHAIDAGTVAREVGLGRRVNTIMQTCFFALSGVMPVEDAIADIKAAIVKTYSRRGEEVVKRNIAAVDQALAHLRAVPVPDHVTADHDRPAPVPETAPDFVKRVTAMMIAGHGDRLPVSAFPVDGTWPTGTSKYEHRSIAAEAPGWNADLCIECNKCVLVCPHAAIRATVVPESALADAPAGFETIPYKGREFPGGRYRLQASPADCTGCTLCVAVCPAYEKGGSGRKALEMRPIQALAGEQEAFDFFRSLPAIPRESVPATVKHTQLLEPLFEFSGACAGCGETPYIKMLTQLFGDRMVMANATGCSSIYGGNLPTTPYTTDASGHGPAWANSLFEDNAEFGLGLRVAIDQMAEQARDTLALLSAQLEPGLVTELLQAEQTDPAGIAAQRGRVAALMGQLAAVKDPLARRLEQLADYLVRKTVWIVGGDGWAYDIGYGGLDHALASGRDVNILVMDTEVYSNTGGQQSKATPIGASAKFATAGRSAAKKDLGLMAMAYDHVYVARTAFGARDSHTLNALMEAEAYRGPSLVLAYSHCVAHGFELSHGLEHQKLAVDSGHWSLYRRDPRRLADGKTALQLDSGAPSAGLAAFMAGESRFSAVERSNPERYHALLDEAEAEIRRKRHLFEHMAGFKE
>NC_016623.1|WP_014249571.1|294609_296130_-|tagaturonate-reductase
MRSLTRDQLAGGAFDVAHTGGAPTLPVTILQVGDGNFLRGFVDWMVDVANGQGLCKAGVAIAQPLDQGIANLLKAQDNLYTVLLRGIEGGREVESRRAVSCVSEALNPYADWARMVELACSPALRFFVSNTTEAGIADREEPYTPGTCQDSFPAKVAALLHARYKELGGSADSGLVFLPCELIEANGANLKRIVLAHAKRWGLEAGFADWVEVHNHFLNTLVDRIVPGYPKDEAAALSAKWGYEDRLAVAAEPFHVWVIEGPAHLAEELPLHKAGLNVVWTDDLQPYRTRKVRILNGAHTASALAAYCAGLDTVKSMMDDPTVSAYLNTVMFEEIVPYVPLPEAERQDYARTIMERFGNPYIRHELISITLNSVSKWQVRVLPSLKDAVARNGQAPAGLSFSLAALLRFYRGTLANGACTGERDAGSYPISDNAEVIAAMSAAWAANAGDLPALVAAILSDVRLWKEDLTAIPGLAARVADSLAAIEAKGMKAAMADLVGAELVAG
>NC_016623.1|WP_162488388.1|294241_294532_-|hypothetical-protein
MTLRIAELELDAAVLRHRLLHIPLALQEDCGLWASHRTIGRQALTLFRAVRQETRDSGDETECDQALSRIEAAYQLVHDAIQSLSELALADLPTRH
>NC_016623.1|WP_014249569.1|293140_294205_-|LacI-family-DNA-binding-transcriptional-regulator
MQTTETRKRTRRGTQRVTMTDVANAADVSPSTVSLYLRRPGAVSRHLAERIARVIDEMGYVPNLVAGSLAAARSRTVGVILPSILNSFFAETYNTLQGMFQAAHYQTLLGVSEFSPEEEESLIRAFLAWSPAAMVVTGFHHTERTRAMLASCGVPVVEMWDMPSHPGEAVGISVGFSHFEVGRMQTSHLYDQGSRKVAYIGAAAHQDLRVRSRTDGYDAEVLRRGLHEPIDFTVPDAATTEVGRWLIDEILTRHPDIDGVVCSNDALALGVLFEVTRRDLRVPEDLAVVGFGDLPFSNSCPPPLTTVRPPQREIGRLSATQILAALDGARIAPQHHNLDCELVIRGSTRPVGKR
>NC_016623.1|WP_162488387.1|291477_293013_-|FAD-binding-protein
MDWLMALGLHSSRRNFLVGAGRFAGAAAAVRLMPGSAFAAEAGGAYCPPPSAWSDLAKAVKGGVLRPEDPFFADVCRPNNLRYGATLPAGIARCASAADVQACIQWVKQQAMPFAVRSGGHSYAGFSTTPGLLIDMTRMAGAELLPGKDGLVKVLGGTLNSAVYKQMERLGRTITHGRCDSVGAAGFLLGGGIGFNMRKYGMASDLLNATELVTADGSHVKADAGTDSALYWACRGGGGGNFGINTSFTLETRPAEAVTVFNLTWTDKLPKVLKLLLIELATAPDDFGSKINVTIPSRQEQCDKVPVSVSILGQLHKSKMTLKEIFKSTWEWIDWSKSKVMEDVPYWAAQDFLVETTFPYYYQEKSSYMKAADIGDEAIAAMFDWAAKMPATSMPVAFKFFQVGGAINRVGPTETAYVHRGYDWLFSVEANWWRPTDSALLIEQALEWQQRFYDDVNRRTKAQGAFQNFPDPSLADWQRAYYGENLAKLAEVKKAVDPAMLFTFAQAIRPA
>NC_016623.1|WP_014249567.1|289746_291300_+|esterase-like-activity-of-phytase-family-protein
MGTTHREGQLRTALLSAIGLTSLSLSIFGVAMGVASAQTADSMTVGGSSFINQGLVGVGRIGADIRDKHSETFGSMSGLTFDAKSWRRNGDSYNGIMFALPDRGYNVTGTTDYRPRLNTLALTLTPYYGSAALAAGAGQQSQITMNLIDTTLLTDADGAVTTGLDPQPGSGVRAAAKGLPPLPQAYNGKIGLDTEGIARLADGSFYISDEYGPYIYHFSATGRMISAVQPPAALLPVRNGGLDFSSNNPAAGQPAPTPANPVSGRQNNQGLEGLSLTPDKTKLAALLQSATRQDGGTGGGSATRRNTRLLIYDVSRNPDSPTLIGHYVVPLPTFQSGNKTLVAAQSEMLALTDKQFLVLSRDSNNGQGMDGTDSLYRSIDIVDVSNATNLVGTVYEDTTPVAPGGNLAASVTPASYTPFLSLNDNGQLAKFGLHNGGAQDSNLLSEKWEAIGLLPALDADRPNDFFLFVGNDNDFLTRNGYQAGAPYDAGADVDTMLLVYRLTLPTYVDPLAIQPPR
>NC_016623.1|WP_014249566.1|288809_289628_+|pyruvate-formate-lyase-activating-protein
MRSHVDDRYSDGHSAMTNAYPPPRPPTGVGPVSGWIHSVETGGTVDGPGIRYVLFMSGCPLRCLYCHNPDTQHMHDGTRTTSTEVLADIALYAEFLKRAHGGLTLSGGEPLVQPEFTAAILRGAKALGMHTALDTSGFLGNHADDHLLEDVDLVLLDIKAFSEKTYRHLTGVPLRPTLEFAERLAGLNKRIWLRYVLVPNLTDDAAEIDGLAEFVAGLGVVDRVDVLPFHKMGEHKWKALGRKYMLTDTEPPSRELVERVRGQFRARGLRAD
>NC_016623.1|WP_044552832.1|319962_323934_+|ATP-binding-cassette-domain-containing-protein
MLGPRRDRAMLVLASFALNVFGLALPVTLLHVYDRILPNESYGTMLLLGLGCGAAAVMEAILRVARSALTTWMGARIEHRSSASLIDRLMRMPLNAFSQQGIGTHFEVYRAIKMVREFYSGQALQSAIDIPFAALYLGLIALLAGWLVLIPLGVLALFLAVGAVLGRRMRRALENRHVLEERRLNFISEVLSGVHTVKGLGAEAGLLRRHERLQQGCSEEDFTVARLSGSASVVATTLSQATMMLVVILGSVSVIDGMMTTGVLTACSMLAGRCVQPVQSLFDRWVRYQSVSLSLRRIGHVLLEVGSDGGTLRVGDGAATAGAVAEPLVPGTIEMDKVRFAYDRGPEILTDLSLSVGPGEFLGVVATNSTGKTTLLRLILGVLRPNSGAVRVGVRSSTETDAMIGIGGVVYVGEQPELFKGTILQNLTLFDPGRADLAMEVCRRLGLDRRIASLPQGYETIVGDASQEALPRGARQMICLARALVREPAVLLLDEPNSSLDTESDKLFRRALEELRGSVTILLVTSRPSLLTLADRVVQIVDGHAVSRGPSGNETMGSPTALVASNPAPSVAGGSGAPDAEPIRAAHDDGDILRRRLAEASAVGACMVPLLDALGWRGAPQTLAEALPHFSEVQTVEELCDVLQRLHFEGRSLRIDLARPDPSLMPCLFRSRDGGVYTLLSADADGVVAFSGQSRETVTLNYGKGTAYAFTALETTAGAGTQNWVGTVIHGYVPLLWAVLGLSAVINLLSVAAPLFTMAIYDKVIATGSFDTLATIAVGAALVIGGDFALRQIRGRALAHAGSRIARTISNATIDRILMLPVGMSERAAIGTQIARVKDLESIRDFISQGQVAALFDVPFALFYLGVMAVLGGPLALVPLAAVLITAAIGAAVHPLVRARTGTTARADTERQEFFVEMVAKMPALRAIGGLAHWRDRYDRLSARTALSGHTAANLSATHAALAGLVVPVAGLATVGVGALQVFTGAMTPGALMASMMLLWRVMVPLQTAVSMLPRIEQLRANARQINGLMSIRPEREPRCATLQPRRLKGEVSFSRVSLRYRNDADPALVGVSFTVKPGQIVAIVGPDGAGKSSLLKVMLGLYAPQAGNVRIDGVDIRQMDPIDLRKSVGYVPQASALFYGTIAQNLRFADQTADVSELRWALSLAGALDEVEALPRGLDTRIGDNQSLRLSPSLTQKICLARAYIRRPRILLLDEPAIRLDFDGDKALHAALSALRGHSTIFLVTHRPSHLTLADTVLTMDAGMIAPANSAGGLPGPRPVGPGSGPGAGPAGGNSVANGIAGALLGGIGLQRPPGVAATPQR
>NC_016623.1|WP_014249580.1|323979_325305_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MAAASDLARPTGKSLSADDAMLSLVRATILVLVLLMAALLAWATLMPVKEAVVTAGQVVPSGNAQVVQHLEGGIVSAILVKETDLVEAGQPLIVFDPKQVQAEREQMNARLLTLELRAERLRAFAAGREPDFASVAGADTPQSEAQIADQRLIYDTQRQARDTAIAVLRAQVSQREAELALYEGQLASIKDQITFITGSVDIRNKLESMGLSSKLQSLETQREQSRLMGEQRRIEGQIIATQQAITEAGNRILDQTAKLAQDAVTEMGTVTAEIAQLREARAKLDDRSQRLTVLSPVRGLVQDLRVNTIGAVVPEGGVLMQIVPVDHEMTVEAHVTPRDVGHLHVGQEATVKVLTYDFARYGAVTGTLQRISATTFLDEQHRPYYKAVIALSRNHVGRDDVQHPVLPGMTTQVEMTTGERSLLEYLLKPIYFALSDSFNER
>NC_016623.1|WP_044552835.1|325517_326345_+|alpha/beta-hydrolase
MAPCPFAVDDRTIAGHAQDIRLRLYRPLIGLAVPALLYLHGGGFTSGSLEEAEETAAAIAAGTPALVVSVGYSLAPAHPFPTAAQDAYRAALWTAETAPSLGVARGGLGVVGYDAGGHVAASLTFLARDLGGVSLAAQALLGPMLDPSLTRASRGGIGDADGKGGAKTRLLDSTIADCARCYRAYLPEAAQRLHPYAAPLESRRLGGLPPALIVTAQNDMLRTEAEQYAAGLIAAGVPTEVTRFPAISHDALPGHRPALQAVTDFLRRRLPAART
>NC_016623.1|WP_014249582.1|326375_327560_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTKSRSKLALLLIAGVAAAGAAGIVVSQGHADAPQTAAAAPPPPEVDVAPVVVRKITDWQSYSGRLEAVERVDVRPQVAGAITAVHFRNGALVRQGDVLFTIDPRPFAAEVARQEAQVAAAQARVRFTAADLERAQRLVRDDTISRQSLESKENEARSAAANLKAAQAALEIARIDLEHSQVRAPVSGRVSRAEVTVGNVVAAGAAAAPLTTLVSVSPIYASFDVDEQTYLTHIAGVKDASGVPVQLGLANEDGYSRDGAVEHVDNRMDAASGTIRVRARFDNADGLLVPGLYARIKVGGSKPHDALMVDDRAIGTDQDKKFVLVVAEDGTVTYRAIVTGAHQAGLRVVKSGLEPGERIVVNGLQHARPGSRVSPRTVAMNGTPEPIRTASTAP
>NC_016623.1|WP_014249583.1|327584_330770_+|efflux-RND-transporter-permease-subunit
MNISKFFIDRPIFAGVLSVALFLAGAISLFQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVAAPLEEQINGVENMLYMQSQANSDGNMALTVTFRLGTDPDKAQQLVQNRVSQALPRLPEDVQRLGVTTVKSSPTLTMVVHLLSPNDRYDMTYLRNYAILNVKDRISRIQGVGEVQVWGAGDYSMRVWLDPNKVAERGLTASDVVAAIREQNVQVAAGVIGASPSLPTTPLQLSINAQGRLKTVDEFAGIVLKIGKDGGVTYLRDVARVELAASQYGLRSLLDNKSAVALGINQAPGANALSIADNVRATMAELKADMPNGVDFSIVYDPTQFVRSSIEAVIHTLLEAVALVVLVVIVFLQTWRASIIPLLAVPVSIVGTFSLMLLLGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIESGLSAKEATYKAMREVSGPIIAIALTLVAVFVPLAAMSGLSGEFYKQFAMTIAISTVISAFNSLTLSPALSAVLLRGHDQPQDWLTRAMNRVFGGFFRLFNRVFHRASTGYGRGVGGVVRHKGMMMLVYVLLLGATVLLGRAVPMGFVPAQDKEYLISFAQLPNGASLDRTEAVIREMTDIALKQPGVQSAVAFPGLSVNGFTNSSSAGIVFVTLKPFAERGDAALSANAIAGTLQKRYAGLKEAFVAIFPPPPVMGLGTLGGFKMQLEDRGALGYEALNAAVNAFVTKAMQTPELGPTFSSYQINVPQLDVDLDRVKAKQQGVAVGEVFDTMQIYLGSLYVNDFNSFGRVYQVRVQADAPFRAESGDIGLLKTRNDRGDMVPLSSLVRVSPSYGPEMVVRYNGYTAADINGGPAPGFSSGQAQAAAERIAAETLPRGVRFEWTDLTYQQILAGNSALWVFPISILLVFLVLAAQYESLTLPLAILMIVPMSLMSALAGVWITGGDNNIFTQIGFMVLVGLSAKNAILIVEFARELEEQGRSTIQAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFAGMIGVTLFGLVLTPVFYVLLRRLAGAKTERSAEIPATPAGAVTHG
>NC_016623.1|WP_014249584.1|330774_331827_-|serine-hydrolase
MLQLTLAAALLLGSAAPSAHAADRLQRLLDRFIAEEELDGGVLLVSGPDLRRVVVSGIADRRGERPVTEETRFYVASVGKMATAAAVMQQVEEGLLSLDRPVRELAPDLPLGKVANANRARLVHLLDHSSGIPDYITDAYEEDEAAKPERLPRSGALLAYAAGEEATGPVGGHYEYSNSNYVLLGHIAALRDGVPFAQVLRSRVLERAGMGSTTVGADPRDRSLAHGYTEDGDVSRRSWAATTGDGPLVTTAGDLERFVFALFRDNRLLKPETVRRMMTPSENEEGQGLGVALWKDRWGRGVGHDGRYDGFEADVRYYPGRRTALIFLTNGNQQNDEALLDAVAEEVFRR
>NC_016623.1|WP_014249585.1|331983_332568_-|hypothetical-protein
MPSVAQTVAFAPAETRRALVHAALSRSQGAIAKKMDVDSIETSIDRLKRVLFPWMVLDFRAEPTKTKALCIFKMFLGDKDDDSAAYAKLASKMETVEQNSKLAKSMSWFKRVKTSSTRTVDSNIFDDMFLLHLESDPKNILRYQMNQELFAQIVRTPPTLSHSKELLAAVRKIRQTCKEAGFTLKNLGLGDSFT
>NC_016623.1|WP_014249586.1|332680_335596_-|DNA-polymerase-I
MTDATAASQNDAAGIPAASNGDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNAVLGFSNMLLKLLADARAEAVAVVFDSKRLNFRNEFYPDYKAHRPEPPEELKPQFALIREATEAFCLPCLELEGYEADDLIATYARLAQEAGRKVTIVSSDKDLMQLVRPGVGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANAEKIKQPARRQKLIEFAEQARISRRLVLLDENVPPPKPLDELRVREPDHQRLIDFLKAQGFRSIVSRVEMEMLKDGRIADGAGSSAAPASAALASAAPAAKDPAAAPSDEPAERPARKTVLNVPEVRYELVQDADALRRWVERARETGVLAVDTETDSLTPATATLVGVSLSTEPGIACYIPLAHGASTAAAGQLDFDAPPPPVQIPTAEAMAILKDVLEDSSVLKIGHNFKFDHQLFARNGIAVSPVDDSMLISYVLDGGAHGHGMDELAEMHLAYTPIPFKEVCGTGKNQITFDRVPLDKALAYAAEDADITLRLWTLLKPRLVDDRMVTVYETLDRPLVPVVADMERAGVRIDKKALSDLSQSLSVRLAEIEKDVHALAGQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEELAEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALAATNTGRLSSTDPNLQNIPVRTEEGKKIRRAFVASPGHKLLSVDYSQIELRLVAEMANIQALKDAFRDGLDIHAATAAQVFGIPLDQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFIKTYLERFHELKVWMESIKSFARQHGYVVTLFGRRCYMPGIQDKNAARRAFAERQAINAPIQGTAADIMKRAMNRMPAALAAAGSSARMLLQVHDELLFEVPEAEAEDAARIVRGVMEGAAHLGVPLVAEAGIGDNWEEAH
>NC_016623.1|WP_044552838.1|335700_336453_-|response-regulator-transcription-factor
MARIIVVEDEADLRDDLVEYLERCGFEVRGASRGAELDRLLESGPADVIVLDVNLPDEDGFSVARRIRASSHAAIIMLTARSSLIDRVIGLELGADVYLVKPVDFREVEAQVKALMRRMQKGTAPLAAPEPSPAAPAPVADARKAWVFDDIEWRIQPPTGAAVPLTATEYKFLSLLVTVPGEPVSRQDISVALTGRDWDPYSRSIDSLVRRLRIKVEERSGCALPVQAVHGVGYAFVGPVVSSVVEDSTL
>NC_016623.1|WP_014249588.1|336571_337321_-|transporter-substrate-binding-domain-containing-protein
MTVSPAAARPVTVLAPELPPMMTTDGTGREASIIAETLAACGHEARFKVVPFGRHWNDFRDGARVDAVTTVPAGMEMPGARSAPYILYQNGASVLRSSGLTVTSLADLAGKRVITFSGAPDVLPGLRDAIPSFGDFRERADQMVHSNLLFAGRVDAVLADGLIFAEYNRQLQDKAKAGGGLPFDPAQPVQFTAIFPPTPYSMVFRDESLRGDFDRCLAELKGKGRIDAIDRAAVARYSATVGDQYLSHR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	312036-312065	0	1.0
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	312090-312119	0	1.0
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP017947	Bosea sp. Tri-49 plasmid unnamed1, complete sequence	36436-36465	5	0.833
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	298310-298339	5	0.833
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MN586047	Gordonia phage EMoore, complete genome	7853-7882	5	0.833
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	197637-197666	5	0.833
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	120545-120574	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	101707-101736	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	292775-292804	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	75125-75154	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP019319	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence	41943-41972	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	108317-108346	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	69921-69950	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	355111-355140	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	598572-598601	6	0.8
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	355135-355164	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	68831-68860	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	593715-593744	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	590112-590141	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1646573-1646602	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1664119-1664148	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	354918-354947	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	354905-354934	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1629454-1629483	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032350	Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence	142132-142161	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1246651-1246680	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1247422-1247451	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1248193-1248222	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP038235	Leisingera sp. NJS201 plasmid unnamed1, complete sequence	58751-58780	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	7388-7417	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	642168-642197	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	49885-49914	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	86026-86055	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	AB983711	Ralstonia phage RSJ5 DNA, complete genome	15634-15663	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	778254-778283	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP033971	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence	181214-181243	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	476373-476402	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MH590601	Streptomyces phage Haizum, complete genome	10600-10629	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MF766048	Streptomyces phage Tefunt, complete genome	10600-10629	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MN304818	Phage 71_18, complete genome	46085-46114	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MK392364	Streptomyces phage Nishikigoi, complete genome	10600-10629	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1155571-1155600	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1023000-1023029	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	51290-51319	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	93210-93239	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1788561-1788590	7	0.767
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP049814	Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence	134845-134874	7	0.767
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	282905-282934	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032350	Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence	144815-144844	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	839-868	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP026268	Aminobacter sp. MSH1 plasmid pBAM1, complete sequence	15719-15748	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	2294-2323	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	63983-64012	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	159845-159874	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	69530-69559	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	28179-28208	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	26611-26640	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	2021-2050	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	636801-636830	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	67751-67780	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	50663-50692	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	64519-64548	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	332002-332031	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	117224-117253	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	91393-91422	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP015733	Arthrobacter sp. U41 plasmid unnamed1, complete sequence	176573-176602	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	71236-71265	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022543	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-3, complete sequence	78283-78312	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	137190-137219	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	936827-936856	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	85427-85456	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	876299-876328	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	72570-72599	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	180464-180493	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	860918-860947	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	614353-614382	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	23164-23193	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	1670-1699	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	16262-16291	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	265501-265530	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022305	Thalassococcus sp. S3 plasmid pS3B, complete sequence	47085-47114	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP012698	Microbacterium sp. No. 7 plasmid A, complete sequence	112070-112099	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	542641-542670	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	MN813693	Mycobacterium phage Imvubu, complete genome	47136-47165	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	686449-686478	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	682370-682399	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	702956-702985	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	696792-696821	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	682370-682399	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	678623-678652	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	56853-56882	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	563464-563493	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	122998-123027	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	243240-243269	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1597837-1597866	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	MT776806	Mycobacterium phage MrMiyagi, complete genome	16379-16408	8	0.733
NC_016623_1	1.2\|312090\|30\|NC_016623\|CRISPRCasFinder	312090-312119	30	NC_048734	Mycobacterium phage Fowlmouth, complete genome	16359-16388	8	0.733
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	387423-387452	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1784809-1784838	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1589621-1589650	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1222102-1222131	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	104599-104628	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	400602-400631	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1300296-1300325	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	331975-332004	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP015232	Epibacterium mobile F1926 plasmid unnamed2, complete sequence	73235-73264	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1481094-1481123	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	124840-124869	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1221199-1221228	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1222094-1222123	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1221449-1221478	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1222085-1222114	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1752516-1752545	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1433120-1433149	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1357238-1357267	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	NC_009660	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02, complete sequence	130-159	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	JN699011	Mycobacterium phage Stinger, complete genome	59989-60018	9	0.7
NC_016623_1	1.1\|312036\|30\|NC_016623\|CRISPRCasFinder	312036-312065	30	KX557275	Gordonia phage CarolAnn, complete genome	35315-35344	9	0.7

1. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 0, identity: 1.0

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gaaccaccggccagcaggtcgtcgccggtt	Protospacer
******************************

2. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 0, identity: 1.0

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
agcccgccaatcagggtatccttgccggcg	Protospacer
******************************

3. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgccaccgaccagcaggtcgtcgccgttg	Protospacer
* .******.***************** *

4. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 5, identity: 0.833

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcaccaccggtcagcagatcgtcgccggca	Protospacer
* ********.******.**********.

5. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MN586047 (Gordonia phage EMoore, complete genome) position: , mismatch: 5, identity: 0.833

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcatcgccgggcagcaggtcgtcgccggtc	Protospacer
* *.*.**** ******************.

6. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 5, identity: 0.833

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
tctccgccgatcagggtatcgttgccggcg	Protospacer
  .*****.*********** *********

7. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccaccaccggccagcaggtcgttgccgtcc	Protospacer
  ********************.**** ..

8. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccaccaccggccagcaggtcgttgccgtcc	Protospacer
  ********************.**** ..

9. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcggcaccggtcagcaggtcgccgccggtg	Protospacer
* . ******.**********.*******

10. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccaccgccggccagcaggtcgttgccggcc	Protospacer
  ***.****************.*****..

11. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP019319 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccgccaccggccagcacgtcgtcgccgttg	Protospacer
  .************* ********** *

12. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccaccgccggccagcaggtcgttgccggcc	Protospacer
  ***.****************.*****..

13. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccgccggccagcaggtcgttgccggca	Protospacer
*  **.****************.*****.

14. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgccaccggacagcaggtcgtcgcccgcc	Protospacer
* .******* *************** *..

15. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 6, identity: 0.8

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
aagccgccggcaagcaggtcgtcgccgtct	Protospacer
.*.**.***** *************** .*

16. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

17. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccgccgccggccagcaggtcgttgccggcc	Protospacer
  .**.****************.*****..

18. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcccctccggtcagcaggtcgtcgccggca	Protospacer
   ** ****.*****************.

19. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gtgccgccagccagcaggtcgtcgccgcca	Protospacer
* .**.**.****************** .

20. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

21. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

22. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

23. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

24. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggacagcaggtcgtcgccctcg	Protospacer
*  ******* ***************  .

25. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032350 (Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccgccgccggccagcaggtcgttgccggcc	Protospacer
  .**.****************.*****..

26. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggtcagcaggtcgttgccgacg	Protospacer
*  *******.***********.****..

27. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggtcagcaggtcgttgccgacg	Protospacer
*  *******.***********.****..

28. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccaccggtcagcaggtcgttgccgacg	Protospacer
*  *******.***********.****..

29. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP038235 (Leisingera sp. NJS201 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tgaagaccggccagcagcccgtcgccggtg	Protospacer
 .*  ************ .**********

30. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgtcgccggtcagcaggtcgtcgccgttc	Protospacer
* ..*.****.**************** *.

31. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgtcgccggtcagcaggtcgtcgccgttc	Protospacer
* ..*.****.**************** *.

32. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccagcggccagcatgtcgtcgccgttg	Protospacer
  .*** ********* ********** *

33. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgtcgccggtcagcaggtcgtcgccgttc	Protospacer
* ..*.****.**************** *.

34. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to AB983711 (Ralstonia phage RSJ5 DNA, complete genome) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgataccagccagcgggtcgtcgccggtg	Protospacer
* . .***.******.*************

35. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
atgcgacctgccagcaggtcggcgccggat	Protospacer
. .* *** ************ ****** *

36. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP033971 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gaacca--ccggccagcaggtcgtcgccggtt	CRISPR spacer
--tccagcgcggccagcaggtcgacgccggga	Protospacer
   ***   ************** ******

37. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 7, identity: 0.767

gaaccacc--ggccagcaggtcgtcgccggtt	CRISPR spacer
--actgtcgtggccagcagctcgtcgccggtc	Protospacer
  **...*  ********* ***********.

38. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MH590601 (Streptomyces phage Haizum, complete genome) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ggaccaccggccagcacgtcgtcctgggcg	Protospacer
*.************** ****** . **.

39. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MF766048 (Streptomyces phage Tefunt, complete genome) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ggaccaccggccagcacgtcgtcctgggcg	Protospacer
*.************** ****** . **.

40. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MN304818 (Phage 71_18, complete genome) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
aacgcgccggccagcagctcgtcgtcggtg	Protospacer
.*  *.*********** ******.****

41. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MK392364 (Streptomyces phage Nishikigoi, complete genome) position: , mismatch: 7, identity: 0.767

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ggaccaccggccagcacgtcgtcctgggcg	Protospacer
*.************** ****** . **.

42. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gtgtcgccgatcagggtatccctgccggca	Protospacer
.  .****.************.*******.

43. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gtgtcgccgatcagggtatccctgccggca	Protospacer
.  .****.************.*******.

44. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
tcgccgccgatcagggtatcgttgccgtca	Protospacer
   *****.*********** ****** *.

45. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcaccaccaatcagggtatcgttgccatcg	Protospacer
.  **.************** *****. **

46. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcgccgccattgagggtatccttgccctcg	Protospacer
.  ****** * **************  **

47. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP049814 (Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccgccgccaaacagggtatccatgccctcg	Protospacer
   ******* ********** ****  **

48. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cagtcgccggtcagcaggtcgtcgccgtcg	Protospacer
 *..*.****.**************** .

49. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032350 (Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccgccgccgaccagcaggtcgtcgccgtcg	Protospacer
  .**.***.***************** .

50. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

51. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP026268 (Aminobacter sp. MSH1 plasmid pBAM1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

52. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

53. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

54. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
agtccaccggcccgccggtcgtcgcccgca	Protospacer
.. ********* ** ********** *.

55. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

56. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

57. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

58. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccaccgtccagccggtcgtcgccgcca	Protospacer
  .****** ***** *********** .

59. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccaccgtccagccggtcgtcgccgcca	Protospacer
  .****** ***** *********** .

60. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

61. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

62. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcaggccgtcgccggcg	Protospacer
  . ** ***********.*********.

63. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgcatgcgggccagcagttcgtcgccggtt	Protospacer
 .  ..* ********* ************

64. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccaccgtccagccggtcgtcgccgcca	Protospacer
  .****** ***** *********** .

65. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccaccgtccagccggtcgtcgccgcca	Protospacer
  .****** ***** *********** .

66. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP015733 (Arthrobacter sp. U41 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
agaccaccggccagtcggtcgtcgccttcg	Protospacer
..************. **********  .

67. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcggcagcggccagcagggcgtcgccggcg	Protospacer
  . ** *********** *********.

68. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022543 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-3, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gggccaccgatcagcaggtcgtcgccatcg	Protospacer
*..******..***************. .

69. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccttgccggcccgcaggtcgtcgacggtg	Protospacer
*  ...****** *********** ****

70. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcggcaccggccagcagttcgacgccgccg	Protospacer
* . ************* *** ***** .

71. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccgacgccggcgagcaggtcctcgccggtc	Protospacer
  . *.***** ******** ********.

72. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcggcaccggccagcagttcgacgccgccg	Protospacer
* . ************* *** ***** .

73. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccccatcagccagcaggtcgtcgccatgc	Protospacer
*  ***.*.*****************.  .

74. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgtcgccggacagcaggtcgttgccggtg	Protospacer
  ..*.**** ***********.******

75. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccgcaccgggcagcacgtcgtcgccgcgg	Protospacer
*   ****** ***** **********

76. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgtcgccggacagcaggtcgttgccggtg	Protospacer
  ..*.**** ***********.******

77. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgtcgccggacagcaggtcgttgccggtg	Protospacer
  ..*.**** ***********.******

78. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgttgccggcgagcaggtcgtcaccggtg	Protospacer
* ....***** ***********.*****

79. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgttgcccgcgagcaggtcgtcgccggtg	Protospacer
* ....** ** *****************

80. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
aactcaccggccagctggccgtcgccgccg	Protospacer
.* .*********** **.******** .

81. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022305 (Thalassococcus sp. S3 plasmid pS3B, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tccgctccgaccagcaggtcgttgccggtc	Protospacer
    * ***.************.******.

82. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP012698 (Microbacterium sp. No. 7 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gcgagaccggcgagcaggtggtcgccggca	Protospacer
* .  ****** ******* ********.

83. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
aggtcgccggccagcgggtcgccgccggtc	Protospacer
....*.*********.*****.*******.

84. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to MN813693 (Mycobacterium phage Imvubu, complete genome) position: , mismatch: 8, identity: 0.733

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ggcagcccggccagcagctcgtcggcggtc	Protospacer
*.    *********** ****** ****.

85. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

86. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

87. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

88. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

89. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

90. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ccattgccaatcagggtcaccttgccggcc	Protospacer
   ..************  **********

91. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcacccccaatcagggtatccctgccagaa	Protospacer
.  ** ***************.****.* .

92. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcacccccaatcagggtatccctgccagaa	Protospacer
.  ** ***************.****.* .

93. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NC_002679 (Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcaaagtcgataagggtatccttgccggcg	Protospacer
.    *.*.** ******************

94. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
gcatagtcgatgagggtatccttgccggcg	Protospacer
.  . *.*.** ******************

95. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
ctatagacaatcagcgtatccttgtcggcg	Protospacer
   . * ******* *********.*****

96. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to MT776806 (Mycobacterium phage MrMiyagi, complete genome) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
atagacccaatcagggaatccttgcccgcc	Protospacer
*     ********** ********* **

97. spacer 1.2|312090|30|NC_016623|CRISPRCasFinder matches to NC_048734 (Mycobacterium phage Fowlmouth, complete genome) position: , mismatch: 8, identity: 0.733

agcccgccaatcagggtatccttgccggcg	CRISPR spacer
atagacccaatcagggaatccttgcccgcc	Protospacer
*     ********** ********* **

98. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgcatgcgggccagcagctcgtcgccggtc	Protospacer
 .  ..* ********* ***********.

99. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tggaaaccggccagcaggtcgtcaccgcgg	Protospacer
 ..  ******************.***

100. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgcccgccgcccagcaggtcgtcgccctcg	Protospacer
 . **.*** ****************  .

101. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtagtcgccaacg	Protospacer
  .******** ******* ******...

102. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tccccgccggccagcacgtcgtcgccttcg	Protospacer
   **.********** *********  .

103. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ccggcaccggccggccggtcgtcgccgaca	Protospacer
  . ********.** ***********..

104. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgcccgccgcccagcaggtcgtcgccctcg	Protospacer
 . **.*** ****************  .

105. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
acgtaaccgggcagcaggtcgtcgcgggcg	Protospacer
. .. ***** ************** **.

106. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP015232 (Epibacterium mobile F1926 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgaccaccgtgcagcaggtcgtcgcgtagc	Protospacer
 .*******  **************  . .

107. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
acgtaaccgggcagcaggtcgtcgcgggcg	Protospacer
. .. ***** ************** **.

108. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gtgttgccggcctgcaggtcgtcgccgagc	Protospacer
* ....****** **************. .

109. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtagtcgccaacg	Protospacer
  .******** ******* ******...

110. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtagtcgccaacg	Protospacer
  .******** ******* ******...

111. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtagtcgccaacg	Protospacer
  .******** ******* ******...

112. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtagtcgccaacg	Protospacer
  .******** ******* ******...

113. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
ttgccaccggcaagcaggtggtcgccaacg	Protospacer
  .******** ******* ******...

114. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
tcgccaccggccagcaggtggtggccaacg	Protospacer
  .**************** ** ***...

115. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
gccatgtgggccagcaggtcgtggccggtg	Protospacer
*   ... ************** ******

116. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to NC_009660 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02, complete sequence) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cggcgggcggccagcaggtcgtcggcggcg	Protospacer
 ..* . ***************** ***.

117. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgggccttggccagcaggtcgtcgcgggta	Protospacer
 .. * ..***************** ***

118. spacer 1.1|312036|30|NC_016623|CRISPRCasFinder matches to KX557275 (Gordonia phage CarolAnn, complete genome) position: , mismatch: 9, identity: 0.7

gaaccaccggccagcaggtcgtcgccggtt	CRISPR spacer
cgcacaccggccggcaggtcgtcgacgaac	Protospacer
 .  ********.*********** **. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

438548 : 444965

Pandoravirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014249671.1\|438548_439877_+	beta-glucosidase	A0A0B5JD41	Pandoravirus	1.3e-58	33.1
WP_014249673.1\|440767_441283_+	recombinase family protein	A0A0C4UR34	Shigella_phage	6.4e-25	43.2
WP_162488390.1\|441569_441914_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_012976163.1\|441952_442774_+\|transposase	IS5-like element ISAli1 family transposase	A0A0M5M147	Mycobacterium_phage	2.7e-09	28.4
WP_085938453.1\|443250_444005_-\|transposase	IS5-like element ISAli12B family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-26	50.4
WP_014249676.1\|444336_444588_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2P1N333	Gordonia_phage	5.5e-06	34.9
WP_014249677.1\|444584_444965_+	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	8.0e-09	36.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_016588

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13985

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189853.1\|576_2496_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014189854.1\|2550_3309_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044553688.1\|4387_6211_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014189857.1\|6223_7405_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_193353767.1\|7597_8542_+	GDP-L-fucose synthase	R9S8B8	Prochlorococcus_phage	5.7e-96	54.3
WP_014189860.1\|8575_9424_-	FkbM family methyltransferase	A0A291AUV0	Sinorhizobium_phage	1.1e-08	27.0
WP_014189861.1\|9493_11452_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014189862.1\|11828_13985_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	9.8e-43	28.2

DBSCAN-SWA_2

20900 : 24931

Synechococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189867.1\|20900_21908_-	kinase	A0A222YW25	Synechococcus_phage	3.0e-18	25.4
WP_014189868.1\|22099_23620_-	B12-binding domain-containing radical SAM protein	A0A0M4R1U9	Streptomyces_phage	2.8e-28	28.7
WP_014189869.1\|23959_24931_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	2.6e-80	49.2

DBSCAN-SWA_3

28922 : 30401

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162488560.1\|28922_30401_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	1.2e-10	32.7

DBSCAN-SWA_4

37771 : 38689

uncultured_marine_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189880.1\|37771_38689_+	hypothetical protein	A0A0F7L8L8	uncultured_marine_virus	6.7e-09	29.9

DBSCAN-SWA_5

43096 : 47945

uncultured_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189887.1\|43096_44266_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A218MN59	uncultured_virus	1.3e-41	30.8
WP_014189889.1\|44421_45492_-	acetoin dehydrogenase	NA	NA	NA	NA
WP_014189890.1\|45478_46435_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_044553785.1\|47009_47945_-	NAD(P)-dependent oxidoreductase	A0A0F7LC08	uncultured_marine_virus	1.5e-72	45.0

DBSCAN-SWA_6

54413 : 58081

Acanthocystis_turfacea_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553793.1\|54413_55082_+	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	3.4e-10	25.5
WP_014189898.1\|55107_55752_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.5e-36	41.1
WP_014189899.1\|55748_57362_+	NTP transferase domain-containing protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	9.5e-51	46.2
WP_014189900.1\|57358_58081_+	hypothetical protein	M1I080	Acanthocystis_turfacea_Chlorella_virus	4.8e-10	25.3

DBSCAN-SWA_7

79486 : 96544

Marinobacter_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553707.1\|79486_94870_-	autotransporter-associated beta strand repeat-containing protein	A0A2D1GMQ7	Marinobacter_phage	6.6e-16	36.8
WP_048816598.1\|95845_96544_+\|tail	tail fiber protein	A0A221J6G5	Arthrobacter_phage	2.5e-08	34.8

DBSCAN-SWA_8

105176 : 107574

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162488536.1\|105176_106028_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.9e-08	28.2
WP_014189926.1\|106039_107011_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044553711.1\|107007_107574_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	2.4e-25	36.3

DBSCAN-SWA_9

115466 : 116621

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553811.1\|115466_116621_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2K9L0G1	Tupanvirus	7.1e-16	28.3

DBSCAN-SWA_10

120759 : 121812

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553719.1\|120759_121812_-	N-acetylneuraminate synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	3.4e-33	34.2

DBSCAN-SWA_11

133942 : 136312

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189957.1\|133942_136312_-	glycosyltransferase	A0A1V0SKU5	Klosneuvirus	1.4e-26	34.6

DBSCAN-SWA_12

141218 : 218456

Stx2-converting_phage(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014189963.1\|141218_143309_-	recombinase family protein	R9TP69	Rhizobium_phage	6.0e-05	24.2
WP_044553820.1\|143783_143942_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-10	58.8
WP_162488541.1\|143938_144310_-\|transposase	transposase	NA	NA	NA	NA
WP_044553822.1\|145349_146438_+	CBS domain-containing protein	NA	NA	NA	NA
WP_014189967.1\|146452_147763_+	N-acetyl sugar amidotransferase	NA	NA	NA	NA
WP_044553726.1\|147777_149379_+	hypothetical protein	R9TMT6	Synechococcus_phage	4.2e-59	32.3
WP_044553727.1\|149375_150173_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_044553728.1\|150189_150978_+	hypothetical protein	E3T537	Cafeteria_roenbergensis_virus	4.4e-17	31.8
WP_162488542.1\|151039_152122_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_014189972.1\|152587_154216_-\|transposase	IS66-like element ISAli10 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-99	46.5
WP_014189974.1\|154295_154643_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.2e-32	56.1
WP_014189975.1\|154639_155050_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014189977.1\|155636_156401_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_162488543.1\|156387_157221_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_081506047.1\|157297_158101_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_014189980.1\|158173_158911_-	acylneuraminate cytidylyltransferase family protein	A0A1B1IVD3	uncultured_Mediterranean_phage	3.7e-10	34.2
WP_081506043.1\|158966_160235_-	class I SAM-dependent methyltransferase	A0A1V0SJ83	Klosneuvirus	9.5e-30	24.3
WP_014189982.1\|160280_161042_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_014189983.1\|161038_161815_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_044553736.1\|161919_162966_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014189985.1\|162996_164292_-	hypothetical protein	NA	NA	NA	NA
WP_014189987.1\|164816_165572_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_081506044.1\|166056_166188_-\|transposase	transposase	NA	NA	NA	NA
WP_081506045.1\|166261_166675_-\|transposase	transposase	NA	NA	NA	NA
WP_081506046.1\|166802_168413_+\|transposase	ISL3 family transposase	U5N3F9	Enterobacteria_phage	5.4e-06	35.4
WP_162488544.1\|168653_170012_+	TIGR00180 family glycosyltransferase	NA	NA	NA	NA
WP_014189991.1\|169963_171166_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014189992.1\|171453_172977_-	glycosyltransferase	NA	NA	NA	NA
WP_162488545.1\|174226_175195_-	hypothetical protein	NA	NA	NA	NA
WP_014189996.1\|175330_177922_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_014189997.1\|178113_179190_-	M23 family metallopeptidase	A0A0K2CNY2	Brevibacillus_phage	8.7e-08	35.4
WP_014189998.1\|179612_180569_+	hypothetical protein	NA	NA	NA	NA
WP_162488562.1\|180786_181383_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.4e-20	37.0
WP_014190000.1\|181405_183952_-	calcium-binding protein	NA	NA	NA	NA
WP_044553747.1\|184051_184348_-	hypothetical protein	NA	NA	NA	NA
WP_014190003.1\|184636_186163_-	flippase	NA	NA	NA	NA
WP_014190004.1\|186408_187671_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2D2W2B8	Stenotrophomonas_phage	6.6e-15	29.5
WP_044553835.1\|187670_188663_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	L7Y3T9	Megavirus	5.1e-39	32.9
WP_014190006.1\|188889_190191_-	glycosyltransferase	NA	NA	NA	NA
WP_014190007.1\|190379_191063_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	NA	NA	NA
WP_162488546.1\|191207_191708_+	hypothetical protein	NA	NA	NA	NA
WP_012978551.1\|191967_192912_-	hypothetical protein	NA	NA	NA	NA
WP_014190009.1\|193534_194425_-	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_014190010.1\|194797_195967_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	8.9e-91	48.5
WP_014190011.1\|196073_197558_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.7e-50	29.4
WP_044553748.1\|197634_197958_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_014190013.1\|197893_198190_-	BrnT family toxin	K4NX81	Burkholderia_phage	3.2e-13	45.9
WP_014190014.1\|198579_198990_+	hypothetical protein	NA	NA	NA	NA
WP_044553837.1\|199071_201210_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	6.3e-42	29.2
WP_014190016.1\|201213_202698_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_044553750.1\|202841_203288_+	GtrA family protein	NA	NA	NA	NA
WP_014190018.1\|203220_204249_-	glycosyltransferase	B9UDL7	Salmonella_phage	7.5e-09	24.7
WP_162488547.1\|204250_206086_-	hypothetical protein	NA	NA	NA	NA
WP_014190020.1\|206110_207070_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.1e-85	48.0
WP_044553754.1\|207124_208456_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.1e-79	39.7
WP_014190022.1\|208882_209920_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.3e-42	34.2
WP_044553756.1\|209895_210759_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.0e-100	61.8
WP_014190024.1\|210770_211676_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-40	40.9
WP_014190025.1\|211672_212755_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-95	51.7
WP_014190026.1\|212828_213380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	3.6e-34	44.0
WP_162488548.1\|213383_216839_-	glycosyltransferase	A0A0E3FKS1	Synechococcus_phage	7.3e-08	28.9
WP_014190028.1\|217052_218456_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.3e-07	24.0

DBSCAN-SWA_13

223806 : 235212

uncultured_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014190033.1\|223806_225609_-	tetratricopeptide repeat protein	D6PFH9	uncultured_phage	5.5e-07	24.0
WP_014190034.1\|226026_226695_+	DUF2076 domain-containing protein	NA	NA	NA	NA
WP_014190035.1\|226784_228158_-	nucleotide sugar dehydrogenase	M1HKZ1	Paramecium_bursaria_Chlorella_virus	8.7e-37	30.1
WP_014190036.1\|228348_228711_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_162488549.1\|228697_228856_+	hypothetical protein	NA	NA	NA	NA
WP_044553760.1\|228852_229101_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_014190038.1\|229109_229982_+	hypothetical protein	NA	NA	NA	NA
WP_014190039.1\|229978_230296_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.6e-15	46.0
WP_044553855.1\|230303_230627_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014190041.1\|231107_231332_+	hypothetical protein	NA	NA	NA	NA
WP_081506050.1\|231387_231921_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.1e-15	37.7
WP_014190043.1\|232216_233860_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_014190044.1\|233985_235212_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.3e-27	35.6

DBSCAN-SWA_14

238333 : 245314

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553763.1\|238333_240613_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.5e-110	36.6
WP_162488550.1\|240635_241145_+	DUF411 domain-containing protein	NA	NA	NA	NA
WP_162488551.1\|241199_242315_-	acyltransferase family protein	NA	NA	NA	NA
WP_014190050.1\|242612_243869_-	HAD-IIIA family hydrolase	A0A222YXG2	Synechococcus_phage	8.0e-13	32.1
WP_014190051.1\|244372_245314_-	recombinase family protein	A0A222YWP5	Escherichia_phage	1.3e-39	57.7

DBSCAN-SWA_15

252399 : 253077

Aurantimonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014190058.1\|252399_253077_-	ParA family protein	A0A0A8IL09	Aurantimonas_phage	2.0e-18	30.1

DBSCAN-SWA_16

259846 : 271515

Tetraselmis_viridis_virus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014190064.1\|259846_260629_+	methyltransferase domain-containing protein	M4R110	Tetraselmis_viridis_virus	5.3e-07	36.7
WP_014190065.1\|260707_261667_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_167331764.1\|261833_262817_+	glycosyltransferase	B9UDL7	Salmonella_phage	2.1e-29	30.1
WP_014190067.1\|262871_264851_-	hypothetical protein	NA	NA	NA	NA
WP_014190068.1\|264847_266758_-	asparagine synthase (glutamine-hydrolyzing)	A0A2P1ELF7	Moumouvirus	4.3e-26	26.1
WP_085938453.1\|266883_267637_+\|transposase	IS5-like element ISAli12B family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-26	50.4
WP_162488555.1\|267834_269187_+	hypothetical protein	NA	NA	NA	NA
WP_014190069.1\|269324_270467_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.1e-32	28.2
WP_014190070.1\|270480_271515_-	NAD-dependent epimerase/dehydratase family protein	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	1.2e-22	26.2

DBSCAN-SWA_17

276532 : 277225

Micromonas_pusilla_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162488564.1\|276532_277225_-	FkbM family methyltransferase	G9E5V7	Micromonas_pusilla_virus	4.3e-08	35.5

DBSCAN-SWA_18

281728 : 283900

Heterosigma_akashiwo_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044553773.1\|281728_283900_-	tetratricopeptide repeat protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	1.8e-12	33.1

DBSCAN-SWA_19

293838 : 294852

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014190080.1\|293838_294852_-	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	9.8e-70	43.6

Anti-CRISPR protein detection

Acr_ID: NC_016588.1|WP_044553707.1|79486_94870_-|autotransporter-associated-beta-strand-repeat-containing-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_016588.1|WP_044553707.1|79486_94870_-|autotransporter-associated-beta-strand-repeat-containing-protein

79486_94870_-

5127 aa aa

79486-96544

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_016585_1	Orphan	1.1\|176664\|42\|NC_016585\|CRISPRCasFinder	176664-176705	42	83383-83424	0

1. spacer 1.1|176664|42|NC_016585|CRISPRCasFinder matches to NC_016588 position: 83383-83424, mismatch: 0

gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	CRISPR spacer
gcgtgttggaggagccgctggcgaagatgctgccggtgccgc	Protospacer
******************************************

6. NC_016586

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016586_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016586_1

59838-60023

TypeIII

Consensus_repeat	Method
CGTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAACG	PILER-CR

2 spacers

cas6,cas2,cas1,csm3gr7,cas10,cmr3gr5,cmr4gr7

The CRISPR arrays of NC_016586_1

>merge|NC_016586|1|59838-60023|PILER-CR
CGTCGCGATGGCATCCGCGTTCGGGAGCGGATTGAAACCATACAGGCTTGGTCATGTCGGGCTCCGGGAAAAAGAGTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAACGTTCAGCCGCCGTGGGGGGAGATCAGCGGGGCTTTCGTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAACG

>NC_016586|1|1|59838-60023|PILER-CR
CGTCGCGATGGCATCCGCGTTCGGGAGCGGATTGAAACC	ATACAGGCTTGGTCATGTCGGGCTCCGGGAAAAAG
AGTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAACG	TTCAGCCGCCGTGGGGGGAGATCAGCGGGGCTTT
CGTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016586.1\|WP_162488313.1\|65414_67100_+\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|379106
NC_016586.1\|WP_014188718.1\|67773_69801_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379210
NC_016586.1\|WP_014188708.1\|54346_55210_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_016586.1\|WP_014188721.1\|74251_75487_+\|hypothetical-protein	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_016586.1\|WP_014188722.1\|75483_76479_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_016586.1\|WP_014188707.1\|53310_54309_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755
NC_016586.1\|WP_014188709.1\|55474_55915_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_014188715.1\|63357_64479_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_016586.1\|WP_014188710.1\|55911_58521_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_016586.1\|WP_014188719.1\|69825_71010_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|273859
NC_016586.1\|WP_014188703.1\|50143_50338_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_162488312.1\|58542_59529_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_016586.1\|WP_014188704.1\|50344_51589_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|237537
NC_016586.1\|WP_014188717.1\|67123_67777_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_014188713.1\|60396_62415_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NC_016586.1\|WP_014188702.1\|49241_50141_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_014188720.1\|71006_74255_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_016586.1\|WP_014188701.1\|46767_49245_+\|conjugal-transfer-protein-TrbE-like	unknown	unknown	gnl\|CDD\|237536
NC_016586.1\|WP_014188706.1\|52357_53314_+\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	unknown	unknown	gnl\|CDD\|377058
NC_016586.1\|WP_044552430.1\|60094_60361_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NC_016586.1\|WP_162488313.1\|65414_67100_+\|SIR2-family-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	5.04614e-20
NC_016586.1\|WP_014188718.1\|67773_69801_+\|AAA-family-ATPase	gnl\|CDD\|379210	pfam13476, AAA_23, AAA domain.	4.41039e-07
NC_016586.1\|WP_014188708.1\|54346_55210_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.40281e-33
NC_016586.1\|WP_014188710.1\|55911_58521_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.13332e-30
NC_016586.1\|WP_014188719.1\|69825_71010_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	2.74341e-15
NC_016586.1\|WP_014188715.1\|63357_64479_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.44592e-47
NC_016586.1\|WP_014188707.1\|53310_54309_+\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.12712e-27
NC_016586.1\|WP_014188713.1\|60396_62415_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.01601e-98
NC_016586.1\|WP_162488312.1\|58542_59529_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	2.6644e-05
NC_016586.1\|WP_014188704.1\|50344_51589_+\|type-IV-secretion-system-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.48915e-39
NC_016586.1\|WP_014188722.1\|75483_76479_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.80348e-51
NC_016586.1\|WP_014188721.1\|74251_75487_+\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	6.29204e-31
NC_016586.1\|WP_014188720.1\|71006_74255_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	7.25193e-32
NC_016586.1\|WP_014188701.1\|46767_49245_+\|conjugal-transfer-protein-TrbE-like	gnl\|CDD\|237536	PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.	1.41947e-159
NC_016586.1\|WP_014188706.1\|52357_53314_+\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	gnl\|CDD\|377058	pfam03524, CagX, Conjugal transfer protein. This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.	1.43766e-23
NC_016586.1\|WP_044552430.1\|60094_60361_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.57485e-19

>NC_016586.1|WP_162488312.1|58542_59529_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MPDHADTAPPLDRRLMEPAATVPLEELAAGWFHQTVTLRCADAAALVDDPAFAGRLRGAFERALMAGASDESLRGAPCRWDPPCAYDVLVREHGKIASGLIVPRPMVLRAEARGRDLLVGLTLFGFACDWTLAAADALTAALRTGIAPPPRPAVEVLTVREARAAHRPGGGASPPPSAGLRLLGRSVESFDGVTVPAAASAVALEFTTPVCLRGSTDLRHGLAGFVGTLTNRVFGLARWQDAGIACDRRALLAAADAVRVEAGDLKRVDWRRGSAKQDRWLPMEGETGTVYLEGPLAPLLPLLALGALVHAGARTTFGQGAYRLRVVA
>NC_016586.1|WP_014188710.1|55911_58521_+|CHAT-domain-containing-protein
MTREEAERLVGQVLAASDETALQRLIEEHAAGMGPLFFELLEARASEPLLLDVARRHLALTGGAALSHLDLAMRLLEAHVQGRLAEAVEELRPALDEDAVDTLIKAAEAGITRRADLGLGRRMLDVARAALESGGHDRLRPTLALEECNYFLLTDDTAAAEACLRGVLDGDAPITDPLLRHALAVNLGVVLLRQGRYADLVRHYTDLLPEIDDDRLRHSARSNLALAHGALGHTGTALTMFLELAEDCRRLGDEDQLATVHGNLALLHERLGLPEEEERHLRVCLDLALNPTGADRTRDWHSVATSCCNLHLFHLRRREFAKAAHWLTQYEKITRGTGVDPDGVTRGRLRLEFAIAHGDLPAALEIADSLVPRLPERVDEEVLAMLGSAGRVMLRAGRLDRAAELFERIVALCERSGHGDLLLSGLGYLGVVRLRTDKTAEAVALFARMTALDRQLRGHVDDPLHQFTFSSQHEALYEEVIGALIDGGDAGPLFDGLQAAKAFAIGHRHAAPAGFAELSAALPPGTAFLEYDHRAGRSVCVVAVHGAAEPVLVSLPLGERELVEAAARFDRCLVWARSLLAGDPFDWLEPVARGLLHPVIERLGTDVRHLVIAPAGGATRLPFHILPLAGGGRVIDRFAVSYAPSATVWLAAAARARRPASFALAAGGKRDDGEGLRRGFTDEGEAVRRLLRSAGCRELAAAIGTGDTCAALLDHLEADILHVAAHGLFDPARPAASGLSLSADGEDRFVSLEALAHRQTAAELVFLSGCDTGRVAPLRNQEALGLVSVLLSQRVTAAALSFWPILGEGAVAPDIVAAFYHGWLLEGLSKAEALRQAMLRHRDRPLYEWAGYGLFGFAAEVPRNDVFPL
>NC_016586.1|WP_014188709.1|55474_55915_+|hypothetical-protein
MTTDPALAVFFFVNAPAIAERLPTGTPAMVPDEAEAVAEALRRLPRERVPELLAELVPAVLAADPGLSDMLDEVRRRQVVRSASEIAQLLPAVEYVMDHAGVLAAIIVGLRVLGENRVKIGGVEITTGSVLRELAELVTSVKSTKS
>NC_016586.1|WP_014188708.1|54346_55210_-|LysR-family-transcriptional-regulator
MDLRHLRHVDTLAATGSLHRAARHLGLRQPALSQSIRALEADVGTRLVDRSPSGTRLTPAGRAFLSEVRHILAALDQAMDVARHTTAAEAAPLRLGITSDSATHRLAATLRNFSKDVVINDGDVANHRSLLAEGRLDLALLPASAMTDHAHGEALWQEDIHLVLPATHPLAADGAIDIHRLRDLPVILGSGDHASAADHALTSACHAAGIDLPATLRVHHLEVRLMLIAVGLGVSVLPAGSPVLTGATGIVGRPLAPPLSITVAAAWPKSGLTSAAQRFLDVARSLA
>NC_016586.1|WP_014188707.1|53310_54309_+|TrbI/VirB10-family-protein
MNNRPDSAPVPSDPLERRRVITSGPHIARILLVLTVAVGLGLAAYMLGRSQGAGDVPKLSVLLDRREPDAKLPSYADLSAPPSPAPSPTPRFEAPKASPAPAKPQAHSPAKDDELRKKALEAGVGGWSRKEPDEAAPAGTPGRTDVAAAGSDCLVPPGTPIAAQTISRVVTERGGIVTAQITRDVWDAGFACLAVPAGSLVTMEIGATVTKGQKRIAVAKPVITRPWPRNDTVQLVAMAADATGASGLPGTVEVPWVGTGLLIAASTAVDLASAALTGGGGLLGTILGRGMESPLDRAAKDLLERAPVITLEAGEPLLLVLRGALRADDFRS
>NC_016586.1|WP_014188706.1|52357_53314_+|TrbG/VirB9-family-P-type-conjugative-transfer-protein
MTRIFPWLALPLLAACGTDTTIPPPTATAASPQPYTLADLHIPPTTTERVPREQPTPRPSRAQTRGWVGQANEAALDLPTLTCFQGKSCEYWYQPDAQYLVYMAEGNQTLVCLKPGEVVRDIVAPGAQVWIPHQPYSFGKGNRRTECIAFMPRRAGLNQQISVFTNERKYDLNVETHKRTHHVEVRWRYPEDWLAALNGPAALTGGSPSEPRDRTTELAFRDRRCAYTLDGDTPAWRPVPTADGQPPVCDDGEITIINFTPGALGAYGAPVLWRIAGDGTRTPAQYGRMNATYHVAGIHDHLLLGLGAQEVHIRRSRP
>NC_016586.1|WP_014188704.1|50344_51589_+|type-IV-secretion-system-protein
MDVSGLSIALHQLTAAVVTGLGLLGPDAHAALRMLMTLSYTLALLLWLFEGKPAVHGPFLRMLLKFAAIGALIDWFPAGSAALMRAAADQGLSLGSGGGMSLDDPGAIAHLGIQAVIPLMLRVKEMLGPVDFFLNFVEIVIYLLSALVVIVSFCILAIQVFLAFLEYRLLSLAAYLAIPFAVLGPTSFVAERAIGYIAASAMKLLVLGAIIAVCGATLSHLTVTGTPTLDQAFGVAVLAAAIFVLAIKAPRAAAGLVNGGPVMDGITALAALWTAGWLGARSVAGGAAASSGAAGSVMASGATAWGGLRSIVTGATGAVGSGADTASSAAGRRYPAGTFRAGAAASPRSGGGWDKPMTEAQRGQLDRLAAGRTYPADLTRGQASRLIQRWGGEESWYRGGAGPKPEAPDTGDGQ
>NC_016586.1|WP_014188703.1|50143_50338_+|hypothetical-protein
MGTRFILLALAILLAIGIIGAVALVLYARSDTGTSALERLERDNPDWKGIGRYEAPVPPRPVRE
>NC_016586.1|WP_014188702.1|49241_50141_+|hypothetical-protein
MTKSLSRAGMALAVTLGVTLASPPPAHAFLGGLLNSFFGGGGGGCFSEKSDGLLGTAVSAVAGYATGGVAGAAMGAGSNLTGSGGQAPGCPIVESKPLMVEGMVQRQEVEIIAQTAHMLTQIDNMIRMRALSDLDTGGVIAGRLSDARRSAGRIATVLWTTEGVDTQFIGLYPDTLPEELTAEGLAAHQAEQARLARAASRASKLVSADVMTGIEAYPERARHLMAVLKACDGQTCAIDTATQATLLNAEMSGQLLMMQAAHGRALEAQSDYEQAAVERARQHALINWRGLATYGAPGS
>NC_016586.1|WP_014188701.1|46767_49245_+|conjugal-transfer-protein-TrbE-like
MLDLTAFDDGFDALSRHLPWDCFVWPGVVLLEEDGALMAVVEYGGRDQSVQDPAEIQQTAMAASNALFPFTGGWTFHFETQRRWGHGYPHGTGAHPVASQIDAERRERLDAAGRQLRSRSFLAITFTPTHKQARRWAAWFTRNPPERAKPDVMRDHVEPFRQLVLQFAGLFGRAVGWARMLDDDAVMAFLHSCVSPIEQPYVSAPDIPGFPIKANLVDVGFLPGSFPAWSNGAERWHLRLVGIGGYPKVSHPGLLNALDALPFPVRWSVRFEAMDHVQARGVFAALWRKHDDTSYDWRSVLLRAVGGFSALRHDPVGVLEALEAEAARLEAEQAGTSSGWMTPTAVLWGASVEEAEARLGDLVKALRSLGFTVLEESWGAERAWYGTLPGHVRPNPRKVPLTQVQLADFLILSSVWGGPAINPHLRCDPLMQLEAEGGTPLMFDLHQGPDGAALVIGPPRTGKSTVLAFMGHQFLARAPGARVVWIDVDATESTSLVATWAAGGEFLSMGSGDGTVADLALQPLADIDTAGGFAWGHGFVMDLLRLQGVLAPGGLSAAQAGDAVDAALHLLAVSPPSERTLSHLAHLVQDNILRIALEPYCRGGPYGDLVDAAEDRFLGSAWTTVDIGALIDRGPGAVPVIRALFRRFYRLFADGRPTLFLVDEAFKALKHQPDELDELRRRGPKKNVALVLATHQLDDIEGSPIAAMLKTIQVLLLLADINAAKRRIVLDWGLNATQAAQVGTAMPRRDIFFKTPEGSRLGQLTLDPIALAVCGCGGAAQRRAAFATMSEAGAAGFAAAWLRRHGLAEAANTLDGNPSDDGDTP
>NC_016586.1|WP_044552430.1|60094_60361_-|CRISPR-associated-endonuclease-Cas2
MVFCYDVANDRRRRRVSAVLEEWGVRVQKSVFEARLTEPQARALLARAGKELGPRDSLRMYALSAHGLAHSAALGGAPVPEQQDFWLL
>NC_016586.1|WP_014188713.1|60396_62415_-|CRISPR-associated-endonuclease-Cas1
MPTAPPDNADLFEEVTRLDTLERAWGRVLRNAGAAGGDGLTVGRFAEAAPSRLLALHRTLRMGDYRPGPLRRLSIPKPDGALRPLAIPPVTDRVAQTAAALVLTPLLDGEFEDASFGYRPGRSVPQAVARVARWRDQGYDWVVDADIERYFERVPHDRLLIRLERSIGAGPLTELIAVWLESGAENGVGLPQGSPLSPLLSNLYLDDLDEALDGRGLRLVRFADDFVLLCRSRERAERALDHAAAVLEEHGLRLNRDKTRIVPFDQGFRFLGHLFVRSLVLPSPRPDDGEETEGDALLRALAIRDAAAEAEEAAAEERDRQSRAAGLDPALRTLHVQTPRRRLALRNEAFTVVERDDLGGERELIAIHHHHLDRIDLGPEADADAEALRWALATDTELAFVDGHGATHGRLTRPEARRAALHLDQARHALDEGLRLDLARRIVDGRLRNQRALLRRLNRSRKLGVVEDAVLAINALLRRLDTAADVAALLGFEGQGAARYWPALAAQIEGEWEFEGRRRRPPPDPVNAVLSYLSGLLERDVAALIARHGLHPGFGVLHSPQDRHDAGIYDLMEEFRAPLMEGLAVTLFNRRTLRPDHFSRRETGEGEIKGCRIDPDAVGAIIRAYEQWVRRPVASPRDGKRTTWRGLIGFQAQALAAHVQGREPYRAYVMDY
>NC_016586.1|WP_014188715.1|63357_64479_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MRGLYPVMISRDLHDVAPLGLLDRSLRPATGLGELSPADRVFGWVNQAGNGAYRGNLRLGPIDPLDGAESVERFDRPLPLAILGQPKPHYGRFYVARTRQGQPQPAGLERPDTAYREGKGLRGRKIYPHHRDLPQGYWQDAAGDDGSRPVAGNRYRDYLRAEPAMPNDPNDQRADRQNRSIEGWVKPGSRFRFDIHVTNLSAVELGALVWLLDGLPDGAVHRLGGGKPLGFGSVRLRIAGWNVHDGAALRDRYVTLAAGSPAATDRDAAVSAFRQAVTTASGAPVFERAPWIAAFLTAARGIGSDTVPVHYPRAAQPGERHPRPRSRAENFRWFQENDRPGGLSALPSLALPQGQDDPPPLPVYVKPVSVKSE
>NC_016586.1|WP_162488313.1|65414_67100_+|SIR2-family-protein
MNRSVVPFVGAGFSYDALHPAGWRSSRSCMPDLLRVAIRNILATQPPCQGNPTHCALLDEIDTATLDRLAEWLTWLSGPVAVCHAAGIADYQKLFPLPSHRYLAGLAREGLVEEVITTNYDCCIETAFDQSFGPASKRAGESRAVVTSLQHYRTYAAAHQRPGHLLIYKVNGCAREFAAVDPTKRAELETAAERIVLTERQLQGFRRENWARDLFQDRARTRTLMFSGFGSDEPQIRHTALTLMEEFGRDSGRTPPVDAMALPNAPFLHSHDGKLSFNQRQVMLGFLHAHANPTVGTAELMPDLDVVCRNVIGPKARADNLLTASDFMADLFVRCWAKRAIEQIDQVLTVWLRNLVPNFRHWTDFLKEQICPGIHGDPASPPSDPVREALSFGKATTQPLFRLLWRMHAPQSPAVPDGWYLPLREEPLQVLATLLLLLLAKPSSSDPEPTLEFAEGSDAGDPLKVGLIGGDSIESLRERPWSGGGTRLVRLIAVPGTTSGPLEGRLVERRGTDPGAPVHIGRYAVLPLDDAIRAAGSPERFGAALRGAFADLRSRSNAALN
>NC_016586.1|WP_014188717.1|67123_67777_+|hypothetical-protein
MTTERQGKKIEPPLVGADKDDEKDQRADRPSWRREAIHLSPICLVAIVRPLRRDLETAQSEMKRELYRYLRRLSQTLLDYGVARPVVCLVIAADKEERGLLDRWGADQGWHRGAFALYAEVEEKRVELRLKDLLSPEVEELMTEDAKQQTLEQYLAKIMEEQARTGVSGPDASLLEVIRSVVQGATRNENPNIRDIIGGWVGDQVEAARRMVEESRR
>NC_016586.1|WP_014188718.1|67773_69801_+|AAA-family-ATPase
MSIEVTTKGAISRITSLKIQNFRGYTGTHALNCDADFVLVVGPNGHGKTGLIDALTLLLTGYNIHDSADKLRSVYREAGSAVSISAECMAEESETCSLAMDIKDEIKRPFALPGENQINPELRARLCAFYQDRVGFLFDREAKGLTLRDVLEPKPQAIIDIEEQLKPIKESLIAASQGKDLRGEWVGDALETLDATLVDAWRPVQEELRQIADLMGDGWTPLTEDVVTDPATAREAVERLARGWLSGMGYPAAEIPGDRLMENLIERLLTMLDGAIEEFRQLAVEASAEARELQKKLDAAAAERATIERHYPNLDKELDWAGGGTGYVDIDLLTLFRLLAKRAEAWRTPPPGSRDELRRIADEFARVVPLEAEKCAGILAVWLDPRRQAKQRRLVLDQRIAELTRELEQARSSEAVRRLETVQYSLRQTRKSLDDAWRNRWERYRFDHEKEGRRQANDFLIAAGEAAEGVRKFLDDALPLSKPLREDLERRANTVLRRFSLVEGMIPLKLSQETRARGEDRKSLTFEPTTGDDGERGLDHFSTGQRAQVAMSLLLAQNQAVTSRLGHRVILLDDVSTAYDLSNLTRETVMWRQLAYGAEGKKNTRVKRQPFLCCHHEDMINMVADLMVPPTRRTMRMLRFKGWSKKAGPDIEQMTVEPSADPAGMFGLKDALARF
>NC_016586.1|WP_014188719.1|69825_71010_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTGVELRFAFQVTTPLFMGGADPTKPELRPPSLKGLLRFWYRAVDPNFALREAALFGARGDGGGQSPFRLRVEPLDQPATVGWADLKPEHFNVGRDRGTRNGLVYLGFPFPMQGRRGIAPGHRFVLSCRFRRPKAGLTPELEECLRAVTAAAWLLGHFGGAGSRARRGFGTLTLVEEVDIRGIDWPDGRALPLISRLDSPEQATAAMSAGLRTLREVWFPGAWGEGQVAIRHPHLGARFDHRLISGAVAPGEWGKGLNGLGRLMQDFRQRRAPDYQSVKDELARVRPLDRTPERAAFGLPLTFRYGSLPGTKPITLAPYAERLRSTHERHGSLIFLRLLQVGGMLHPLVTRLDGAIPGNAPPAAARGSGRRLQPTDGKLLERFLDHATREGTPS
>NC_016586.1|WP_014188720.1|71006_74255_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MKRYSLWQQKLIAFFHDPPSKPFTGIGKVGGHKKIADQLFDAFQANNKGREWRHYYKAGDWAASGADRPLLYVPRGPKGVGQVYWHTEPVITHPLAPGHRMELHGDAGVPPAEEDTLAVTDGVDLAKDLIGDAKAIATELADLVTDWGNEDQLRQASVVLWRRFRTDLIKARGYDPLWQEMPAESRCPDHAIWDHLKVASALAFLKPHKMMEKIGDEGAQQPWMLRMGIGPVGRFIGESRSSRDLWISSFLLSDLAWHLMQPIVERYGADCIVYPDLHANPRADAWLKTHRDYGDDLRDVFDGATCDATSFAAMIPDNFVALLPLGGEGELPHLAALCAEAVKAMEDRWRQLADRVRDWIAADVRPEGDDWRAIWNRQHGACPVHATWVAVPWLPMGRIGDAASLRIGAPLPCQTPGAEVPERDRIAIAERAERLSPWMSQKIWTHYENARSVYAASHLDYHQMERGFDYALTHHQLMVRHRLRKAADTSAVPPAEEGEKCTLCGAREALRLSPAGHGNPRQAARAFWSHESLDPDRSGAERLCAICATKRFLVAADTGGTTFNHLWGTGEDRDRDGKYRVPFPSTATVAAQDFLVRVATDPGLAGEREAVVRAARTAGLPRTSFPRALPRLADAAAGEGRSFLEFEAEDMLFPEVLEGKRGASALSAEKKNGLKDLQKAVRKLRAKATETAGKEKPAAPETGIAVLRLDGDAMGMLLLGDPERIATTWKDVLHPDVLDRLPKAEYLNKAGWPSLLGQKRLMGPTLHAFVSRALGHFSHTIVPWVVEREFGGRLIYAGGDDLLCLAPAAEAVDLAARLQQLFSAAWVIDTSSEEPAWGWRRGGRRDERGQDDLRRRFAIPVMPGDGGLIRLNDPSQLSAPHVADGPEGAADRRRLHGLLMPMLGSGSSLSAGIALAHYKTPLSVLLRRSADLLRMAKAAGGAHLAIGHASRGGDKTTVCLPWTLSEGDEALHSARDELATVIQGFRTSLPGRLPYKLRETAEPLHAVLTMEPEPPPERRDALLRGLFLDALDSGSPGSAGEAAFRLWRHAVGTRPAKPDGWADALLLCRAIAGGIGKEEDEA
>NC_016586.1|WP_014188721.1|74251_75487_+|hypothetical-protein
MSAAHRTRLDFLVEPAEALLFGPPRGFSAGEAHRVASQFPPTPQAFQGMVRTRLLLGGDLSVDLNSRAGAALVPSLVGTADRLPEGWRIDGPFPARRGKDGIVRPWVATPRFLLMPPKDADGATVHQAHFRSADPQGGLSDRAPKEPGGDTLPGRPELGDMRPPGGWIDPANLHAVLSGAPQGWRAGGWCCDLPPFVKRESQSGVAIDARTGRTRHGMLYFSEALRFASGSGLLGGFTGTLAPSLSAAALTTGAGQAGRKGRLVRFAKAERLDPDWLAVREGRYLPDRVTEADRFWLVALTPARRSKAAELPIRTPRGSAVSVRVVAALAGPPVVLGGFDLAGGKPRSNWSYHPAGSAWLIQLTGGDDAARAALLRDLHDSHILGDENEAVMGFGHALVGLCERKQEETGS
>NC_016586.1|WP_014188722.1|75483_76479_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTLWTRTAVMGLYTLSPTHVGTGQATGAIDLPIARDAATGFPVLPATSLKGVLRDRFSPDPQPSQSDRDLIIQLFGSELADIGKDSDTGKDSDGDDGGLKPGRLAVTEGRLVAYPVRSLSRPFFHVTCPQILEQLLRDLRATGGPAPSLDLTALDDLRGALASDKALAGKALVLEDLVFAPDTVLAPDGIGAIAAFLAGLLPADEAATRRRLESGLIVIPDADFTALMRSAVPVRARVKLTGGKTTDKWTNPDSGETESGNLWYEETLPSDCLFVALVGQRRDRDRKGATLQTLLDRAANLAVLQVGGHETVGQGLCLCTLEAAAPSGGAR

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Crispr_ID: NC_016586_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016586_2

62637-63046

TypeIII

Consensus_repeat	Method
GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC	PILER-CR
TCCGCGTTTGGGAGCGGATTGAAAC	CRISPRCasFinder
TCCGCGTTTGGGAGCGGATTGAAAC	CRT

5 spacers

cas1,cas2,cas6,csm3gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

The CRISPR arrays of NC_016586_2

>merge|NC_016586|2|62637-63046|PILER-CR,CRISPRCasFinder,CRT
GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAACATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGACGTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAACCCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGCGTTCCGCTGGTGTCCGCGTTTGGGAGCGGATTGAAACGGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGAGTTCCGCCGGTATCCGCGTTTGGGAGCGGATTGAAACACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTGGTTCCGCCGGGGTCCGCGTTTGGGAGCGGATTGAAACGCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGTTTTACGTCAGTCTCCGCGTTTGGGAGCGGATAGCATG

>NC_016586|2|2|62637-62974|PILER-CR
GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC	ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGAC
GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC	CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGC
GTTCCGCTGGTGTCCGCGTTTGGGAGCGGATTGAAAC	GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGA
GTTCCGCCGGTATCCGCGTTTGGGAGCGGATTGAAAC	ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTG
GTTCCGCCGGGGTCCGCGTTTGGGAGCGGATTGAAAC

>NC_016586|2|1|62649-63046|CRISPRCasFinder
TCCGCGTTTGGGAGCGGATTGAAAC	ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGACGTTCCGCCGGTG
TCCGCGTTTGGGAGCGGATTGAAAC	CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGCGTTCCGCTGGTG
TCCGCGTTTGGGAGCGGATTGAAAC	GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGAGTTCCGCCGGTA
TCCGCGTTTGGGAGCGGATTGAAAC	ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTGGTTCCGCCGGGG
TCCGCGTTTGGGAGCGGATTGAAAC	GCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGTTTTACGTCAGTC
TCCGCGTTTGGGAGCGGATAGCATG

>NC_016586|2|1|62649-63046|CRT
TCCGCGTTTGGGAGCGGATTGAAAC	ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGACGTTCCGCCGGTG
TCCGCGTTTGGGAGCGGATTGAAAC	CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGCGTTCCGCTGGTG
TCCGCGTTTGGGAGCGGATTGAAAC	GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGAGTTCCGCCGGTA
TCCGCGTTTGGGAGCGGATTGAAAC	ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTGGTTCCGCCGGGG
TCCGCGTTTGGGAGCGGATTGAAAC	GCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGTTTTACGTCAGTC
TCCGCGTTTGGGAGCGGATAGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016586.1\|WP_162488313.1\|65414_67100_+\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|379106
NC_016586.1\|WP_014188718.1\|67773_69801_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379210
NC_016586.1\|WP_014188708.1\|54346_55210_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_016586.1\|WP_014188721.1\|74251_75487_+\|hypothetical-protein	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_016586.1\|WP_014188722.1\|75483_76479_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_016586.1\|WP_014188710.1\|55911_58521_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_016586.1\|WP_014188709.1\|55474_55915_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_014188715.1\|63357_64479_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_016586.1\|WP_014188707.1\|53310_54309_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|319755
NC_016586.1\|WP_014188719.1\|69825_71010_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|273859
NC_016586.1\|WP_014188703.1\|50143_50338_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_162488312.1\|58542_59529_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_016586.1\|WP_014188704.1\|50344_51589_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|237537
NC_016586.1\|WP_014188717.1\|67123_67777_+\|hypothetical-protein	unknown	unknown	unknown
NC_016586.1\|WP_014188713.1\|60396_62415_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NC_016586.1\|WP_014188720.1\|71006_74255_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_016586.1\|WP_014188723.1\|76475_76913_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cls001851_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_016586.1\|WP_014188706.1\|52357_53314_+\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	unknown	unknown	gnl\|CDD\|377058
NC_016586.1\|WP_044552430.1\|60094_60361_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_016586.1\|WP_014188724.1\|76909_77989_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|213662

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_016586.1\|WP_162488312.1\|58542_59529_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	6.9e-38	125.4	0.0
NC_016586.1\|WP_014188722.1\|75483_76479_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7.2e-49	161.6	0.0
NC_016586.1\|WP_014188721.1\|74251_75487_+\|hypothetical-protein	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	1.2e-36	121.5	0.2
NC_016586.1\|WP_014188720.1\|71006_74255_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	1.4e-62	206.8	0.0
NC_016586.1\|WP_014188719.1\|69825_71010_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	6.9e-17	57.1	0.4
NC_016586.1\|WP_014188715.1\|63357_64479_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	6.9e-53	175.2	0.0
NC_016586.1\|WP_014188723.1\|76475_76913_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cls001851_cmr5gr11_CAS-III-B	1.4e-101	331.1	3.9
NC_016586.1\|WP_044552430.1\|60094_60361_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.1e-19	63.3	0.0
NC_016586.1\|WP_014188724.1\|76909_77989_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	1.8e-30	100.9	0.0
NC_016586.1\|WP_014188713.1\|60396_62415_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	5e-71	234.0	0.0

Protein	Function_ID	Function_description	E-value
NC_016586.1\|WP_162488313.1\|65414_67100_+\|SIR2-family-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	5.04614e-20
NC_016586.1\|WP_014188708.1\|54346_55210_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.40281e-33
NC_016586.1\|WP_014188710.1\|55911_58521_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.13332e-30
NC_016586.1\|WP_014188719.1\|69825_71010_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	2.74341e-15
NC_016586.1\|WP_014188715.1\|63357_64479_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.44592e-47
NC_016586.1\|WP_014188718.1\|67773_69801_+\|AAA-family-ATPase	gnl\|CDD\|379210	pfam13476, AAA_23, AAA domain.	4.41039e-07
NC_016586.1\|WP_014188707.1\|53310_54309_+\|TrbI/VirB10-family-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	1.12712e-27
NC_016586.1\|WP_014188713.1\|60396_62415_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.01601e-98
NC_016586.1\|WP_162488312.1\|58542_59529_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	2.6644e-05
NC_016586.1\|WP_014188704.1\|50344_51589_+\|type-IV-secretion-system-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.48915e-39
NC_016586.1\|WP_014188722.1\|75483_76479_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.80348e-51
NC_016586.1\|WP_014188721.1\|74251_75487_+\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	6.29204e-31
NC_016586.1\|WP_014188720.1\|71006_74255_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	7.25193e-32
NC_016586.1\|WP_014188723.1\|76475_76913_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.72697e-18
NC_016586.1\|WP_014188706.1\|52357_53314_+\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	gnl\|CDD\|377058	pfam03524, CagX, Conjugal transfer protein. This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.	1.43766e-23
NC_016586.1\|WP_044552430.1\|60094_60361_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.57485e-19
NC_016586.1\|WP_014188724.1\|76909_77989_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.94775e-28

>NC_016586.1|WP_014188713.1|60396_62415_-|CRISPR-associated-endonuclease-Cas1
MPTAPPDNADLFEEVTRLDTLERAWGRVLRNAGAAGGDGLTVGRFAEAAPSRLLALHRTLRMGDYRPGPLRRLSIPKPDGALRPLAIPPVTDRVAQTAAALVLTPLLDGEFEDASFGYRPGRSVPQAVARVARWRDQGYDWVVDADIERYFERVPHDRLLIRLERSIGAGPLTELIAVWLESGAENGVGLPQGSPLSPLLSNLYLDDLDEALDGRGLRLVRFADDFVLLCRSRERAERALDHAAAVLEEHGLRLNRDKTRIVPFDQGFRFLGHLFVRSLVLPSPRPDDGEETEGDALLRALAIRDAAAEAEEAAAEERDRQSRAAGLDPALRTLHVQTPRRRLALRNEAFTVVERDDLGGERELIAIHHHHLDRIDLGPEADADAEALRWALATDTELAFVDGHGATHGRLTRPEARRAALHLDQARHALDEGLRLDLARRIVDGRLRNQRALLRRLNRSRKLGVVEDAVLAINALLRRLDTAADVAALLGFEGQGAARYWPALAAQIEGEWEFEGRRRRPPPDPVNAVLSYLSGLLERDVAALIARHGLHPGFGVLHSPQDRHDAGIYDLMEEFRAPLMEGLAVTLFNRRTLRPDHFSRRETGEGEIKGCRIDPDAVGAIIRAYEQWVRRPVASPRDGKRTTWRGLIGFQAQALAAHVQGREPYRAYVMDY
>NC_016586.1|WP_044552430.1|60094_60361_-|CRISPR-associated-endonuclease-Cas2
MVFCYDVANDRRRRRVSAVLEEWGVRVQKSVFEARLTEPQARALLARAGKELGPRDSLRMYALSAHGLAHSAALGGAPVPEQQDFWLL
>NC_016586.1|WP_162488312.1|58542_59529_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MPDHADTAPPLDRRLMEPAATVPLEELAAGWFHQTVTLRCADAAALVDDPAFAGRLRGAFERALMAGASDESLRGAPCRWDPPCAYDVLVREHGKIASGLIVPRPMVLRAEARGRDLLVGLTLFGFACDWTLAAADALTAALRTGIAPPPRPAVEVLTVREARAAHRPGGGASPPPSAGLRLLGRSVESFDGVTVPAAASAVALEFTTPVCLRGSTDLRHGLAGFVGTLTNRVFGLARWQDAGIACDRRALLAAADAVRVEAGDLKRVDWRRGSAKQDRWLPMEGETGTVYLEGPLAPLLPLLALGALVHAGARTTFGQGAYRLRVVA
>NC_016586.1|WP_014188710.1|55911_58521_+|CHAT-domain-containing-protein
MTREEAERLVGQVLAASDETALQRLIEEHAAGMGPLFFELLEARASEPLLLDVARRHLALTGGAALSHLDLAMRLLEAHVQGRLAEAVEELRPALDEDAVDTLIKAAEAGITRRADLGLGRRMLDVARAALESGGHDRLRPTLALEECNYFLLTDDTAAAEACLRGVLDGDAPITDPLLRHALAVNLGVVLLRQGRYADLVRHYTDLLPEIDDDRLRHSARSNLALAHGALGHTGTALTMFLELAEDCRRLGDEDQLATVHGNLALLHERLGLPEEEERHLRVCLDLALNPTGADRTRDWHSVATSCCNLHLFHLRRREFAKAAHWLTQYEKITRGTGVDPDGVTRGRLRLEFAIAHGDLPAALEIADSLVPRLPERVDEEVLAMLGSAGRVMLRAGRLDRAAELFERIVALCERSGHGDLLLSGLGYLGVVRLRTDKTAEAVALFARMTALDRQLRGHVDDPLHQFTFSSQHEALYEEVIGALIDGGDAGPLFDGLQAAKAFAIGHRHAAPAGFAELSAALPPGTAFLEYDHRAGRSVCVVAVHGAAEPVLVSLPLGERELVEAAARFDRCLVWARSLLAGDPFDWLEPVARGLLHPVIERLGTDVRHLVIAPAGGATRLPFHILPLAGGGRVIDRFAVSYAPSATVWLAAAARARRPASFALAAGGKRDDGEGLRRGFTDEGEAVRRLLRSAGCRELAAAIGTGDTCAALLDHLEADILHVAAHGLFDPARPAASGLSLSADGEDRFVSLEALAHRQTAAELVFLSGCDTGRVAPLRNQEALGLVSVLLSQRVTAAALSFWPILGEGAVAPDIVAAFYHGWLLEGLSKAEALRQAMLRHRDRPLYEWAGYGLFGFAAEVPRNDVFPL
>NC_016586.1|WP_014188709.1|55474_55915_+|hypothetical-protein
MTTDPALAVFFFVNAPAIAERLPTGTPAMVPDEAEAVAEALRRLPRERVPELLAELVPAVLAADPGLSDMLDEVRRRQVVRSASEIAQLLPAVEYVMDHAGVLAAIIVGLRVLGENRVKIGGVEITTGSVLRELAELVTSVKSTKS
>NC_016586.1|WP_014188708.1|54346_55210_-|LysR-family-transcriptional-regulator
MDLRHLRHVDTLAATGSLHRAARHLGLRQPALSQSIRALEADVGTRLVDRSPSGTRLTPAGRAFLSEVRHILAALDQAMDVARHTTAAEAAPLRLGITSDSATHRLAATLRNFSKDVVINDGDVANHRSLLAEGRLDLALLPASAMTDHAHGEALWQEDIHLVLPATHPLAADGAIDIHRLRDLPVILGSGDHASAADHALTSACHAAGIDLPATLRVHHLEVRLMLIAVGLGVSVLPAGSPVLTGATGIVGRPLAPPLSITVAAAWPKSGLTSAAQRFLDVARSLA
>NC_016586.1|WP_014188707.1|53310_54309_+|TrbI/VirB10-family-protein
MNNRPDSAPVPSDPLERRRVITSGPHIARILLVLTVAVGLGLAAYMLGRSQGAGDVPKLSVLLDRREPDAKLPSYADLSAPPSPAPSPTPRFEAPKASPAPAKPQAHSPAKDDELRKKALEAGVGGWSRKEPDEAAPAGTPGRTDVAAAGSDCLVPPGTPIAAQTISRVVTERGGIVTAQITRDVWDAGFACLAVPAGSLVTMEIGATVTKGQKRIAVAKPVITRPWPRNDTVQLVAMAADATGASGLPGTVEVPWVGTGLLIAASTAVDLASAALTGGGGLLGTILGRGMESPLDRAAKDLLERAPVITLEAGEPLLLVLRGALRADDFRS
>NC_016586.1|WP_014188706.1|52357_53314_+|TrbG/VirB9-family-P-type-conjugative-transfer-protein
MTRIFPWLALPLLAACGTDTTIPPPTATAASPQPYTLADLHIPPTTTERVPREQPTPRPSRAQTRGWVGQANEAALDLPTLTCFQGKSCEYWYQPDAQYLVYMAEGNQTLVCLKPGEVVRDIVAPGAQVWIPHQPYSFGKGNRRTECIAFMPRRAGLNQQISVFTNERKYDLNVETHKRTHHVEVRWRYPEDWLAALNGPAALTGGSPSEPRDRTTELAFRDRRCAYTLDGDTPAWRPVPTADGQPPVCDDGEITIINFTPGALGAYGAPVLWRIAGDGTRTPAQYGRMNATYHVAGIHDHLLLGLGAQEVHIRRSRP
>NC_016586.1|WP_014188704.1|50344_51589_+|type-IV-secretion-system-protein
MDVSGLSIALHQLTAAVVTGLGLLGPDAHAALRMLMTLSYTLALLLWLFEGKPAVHGPFLRMLLKFAAIGALIDWFPAGSAALMRAAADQGLSLGSGGGMSLDDPGAIAHLGIQAVIPLMLRVKEMLGPVDFFLNFVEIVIYLLSALVVIVSFCILAIQVFLAFLEYRLLSLAAYLAIPFAVLGPTSFVAERAIGYIAASAMKLLVLGAIIAVCGATLSHLTVTGTPTLDQAFGVAVLAAAIFVLAIKAPRAAAGLVNGGPVMDGITALAALWTAGWLGARSVAGGAAASSGAAGSVMASGATAWGGLRSIVTGATGAVGSGADTASSAAGRRYPAGTFRAGAAASPRSGGGWDKPMTEAQRGQLDRLAAGRTYPADLTRGQASRLIQRWGGEESWYRGGAGPKPEAPDTGDGQ
>NC_016586.1|WP_014188703.1|50143_50338_+|hypothetical-protein
MGTRFILLALAILLAIGIIGAVALVLYARSDTGTSALERLERDNPDWKGIGRYEAPVPPRPVRE
>NC_016586.1|WP_014188715.1|63357_64479_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MRGLYPVMISRDLHDVAPLGLLDRSLRPATGLGELSPADRVFGWVNQAGNGAYRGNLRLGPIDPLDGAESVERFDRPLPLAILGQPKPHYGRFYVARTRQGQPQPAGLERPDTAYREGKGLRGRKIYPHHRDLPQGYWQDAAGDDGSRPVAGNRYRDYLRAEPAMPNDPNDQRADRQNRSIEGWVKPGSRFRFDIHVTNLSAVELGALVWLLDGLPDGAVHRLGGGKPLGFGSVRLRIAGWNVHDGAALRDRYVTLAAGSPAATDRDAAVSAFRQAVTTASGAPVFERAPWIAAFLTAARGIGSDTVPVHYPRAAQPGERHPRPRSRAENFRWFQENDRPGGLSALPSLALPQGQDDPPPLPVYVKPVSVKSE
>NC_016586.1|WP_162488313.1|65414_67100_+|SIR2-family-protein
MNRSVVPFVGAGFSYDALHPAGWRSSRSCMPDLLRVAIRNILATQPPCQGNPTHCALLDEIDTATLDRLAEWLTWLSGPVAVCHAAGIADYQKLFPLPSHRYLAGLAREGLVEEVITTNYDCCIETAFDQSFGPASKRAGESRAVVTSLQHYRTYAAAHQRPGHLLIYKVNGCAREFAAVDPTKRAELETAAERIVLTERQLQGFRRENWARDLFQDRARTRTLMFSGFGSDEPQIRHTALTLMEEFGRDSGRTPPVDAMALPNAPFLHSHDGKLSFNQRQVMLGFLHAHANPTVGTAELMPDLDVVCRNVIGPKARADNLLTASDFMADLFVRCWAKRAIEQIDQVLTVWLRNLVPNFRHWTDFLKEQICPGIHGDPASPPSDPVREALSFGKATTQPLFRLLWRMHAPQSPAVPDGWYLPLREEPLQVLATLLLLLLAKPSSSDPEPTLEFAEGSDAGDPLKVGLIGGDSIESLRERPWSGGGTRLVRLIAVPGTTSGPLEGRLVERRGTDPGAPVHIGRYAVLPLDDAIRAAGSPERFGAALRGAFADLRSRSNAALN
>NC_016586.1|WP_014188717.1|67123_67777_+|hypothetical-protein
MTTERQGKKIEPPLVGADKDDEKDQRADRPSWRREAIHLSPICLVAIVRPLRRDLETAQSEMKRELYRYLRRLSQTLLDYGVARPVVCLVIAADKEERGLLDRWGADQGWHRGAFALYAEVEEKRVELRLKDLLSPEVEELMTEDAKQQTLEQYLAKIMEEQARTGVSGPDASLLEVIRSVVQGATRNENPNIRDIIGGWVGDQVEAARRMVEESRR
>NC_016586.1|WP_014188718.1|67773_69801_+|AAA-family-ATPase
MSIEVTTKGAISRITSLKIQNFRGYTGTHALNCDADFVLVVGPNGHGKTGLIDALTLLLTGYNIHDSADKLRSVYREAGSAVSISAECMAEESETCSLAMDIKDEIKRPFALPGENQINPELRARLCAFYQDRVGFLFDREAKGLTLRDVLEPKPQAIIDIEEQLKPIKESLIAASQGKDLRGEWVGDALETLDATLVDAWRPVQEELRQIADLMGDGWTPLTEDVVTDPATAREAVERLARGWLSGMGYPAAEIPGDRLMENLIERLLTMLDGAIEEFRQLAVEASAEARELQKKLDAAAAERATIERHYPNLDKELDWAGGGTGYVDIDLLTLFRLLAKRAEAWRTPPPGSRDELRRIADEFARVVPLEAEKCAGILAVWLDPRRQAKQRRLVLDQRIAELTRELEQARSSEAVRRLETVQYSLRQTRKSLDDAWRNRWERYRFDHEKEGRRQANDFLIAAGEAAEGVRKFLDDALPLSKPLREDLERRANTVLRRFSLVEGMIPLKLSQETRARGEDRKSLTFEPTTGDDGERGLDHFSTGQRAQVAMSLLLAQNQAVTSRLGHRVILLDDVSTAYDLSNLTRETVMWRQLAYGAEGKKNTRVKRQPFLCCHHEDMINMVADLMVPPTRRTMRMLRFKGWSKKAGPDIEQMTVEPSADPAGMFGLKDALARF
>NC_016586.1|WP_014188719.1|69825_71010_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTGVELRFAFQVTTPLFMGGADPTKPELRPPSLKGLLRFWYRAVDPNFALREAALFGARGDGGGQSPFRLRVEPLDQPATVGWADLKPEHFNVGRDRGTRNGLVYLGFPFPMQGRRGIAPGHRFVLSCRFRRPKAGLTPELEECLRAVTAAAWLLGHFGGAGSRARRGFGTLTLVEEVDIRGIDWPDGRALPLISRLDSPEQATAAMSAGLRTLREVWFPGAWGEGQVAIRHPHLGARFDHRLISGAVAPGEWGKGLNGLGRLMQDFRQRRAPDYQSVKDELARVRPLDRTPERAAFGLPLTFRYGSLPGTKPITLAPYAERLRSTHERHGSLIFLRLLQVGGMLHPLVTRLDGAIPGNAPPAAARGSGRRLQPTDGKLLERFLDHATREGTPS
>NC_016586.1|WP_014188720.1|71006_74255_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MKRYSLWQQKLIAFFHDPPSKPFTGIGKVGGHKKIADQLFDAFQANNKGREWRHYYKAGDWAASGADRPLLYVPRGPKGVGQVYWHTEPVITHPLAPGHRMELHGDAGVPPAEEDTLAVTDGVDLAKDLIGDAKAIATELADLVTDWGNEDQLRQASVVLWRRFRTDLIKARGYDPLWQEMPAESRCPDHAIWDHLKVASALAFLKPHKMMEKIGDEGAQQPWMLRMGIGPVGRFIGESRSSRDLWISSFLLSDLAWHLMQPIVERYGADCIVYPDLHANPRADAWLKTHRDYGDDLRDVFDGATCDATSFAAMIPDNFVALLPLGGEGELPHLAALCAEAVKAMEDRWRQLADRVRDWIAADVRPEGDDWRAIWNRQHGACPVHATWVAVPWLPMGRIGDAASLRIGAPLPCQTPGAEVPERDRIAIAERAERLSPWMSQKIWTHYENARSVYAASHLDYHQMERGFDYALTHHQLMVRHRLRKAADTSAVPPAEEGEKCTLCGAREALRLSPAGHGNPRQAARAFWSHESLDPDRSGAERLCAICATKRFLVAADTGGTTFNHLWGTGEDRDRDGKYRVPFPSTATVAAQDFLVRVATDPGLAGEREAVVRAARTAGLPRTSFPRALPRLADAAAGEGRSFLEFEAEDMLFPEVLEGKRGASALSAEKKNGLKDLQKAVRKLRAKATETAGKEKPAAPETGIAVLRLDGDAMGMLLLGDPERIATTWKDVLHPDVLDRLPKAEYLNKAGWPSLLGQKRLMGPTLHAFVSRALGHFSHTIVPWVVEREFGGRLIYAGGDDLLCLAPAAEAVDLAARLQQLFSAAWVIDTSSEEPAWGWRRGGRRDERGQDDLRRRFAIPVMPGDGGLIRLNDPSQLSAPHVADGPEGAADRRRLHGLLMPMLGSGSSLSAGIALAHYKTPLSVLLRRSADLLRMAKAAGGAHLAIGHASRGGDKTTVCLPWTLSEGDEALHSARDELATVIQGFRTSLPGRLPYKLRETAEPLHAVLTMEPEPPPERRDALLRGLFLDALDSGSPGSAGEAAFRLWRHAVGTRPAKPDGWADALLLCRAIAGGIGKEEDEA
>NC_016586.1|WP_014188721.1|74251_75487_+|hypothetical-protein
MSAAHRTRLDFLVEPAEALLFGPPRGFSAGEAHRVASQFPPTPQAFQGMVRTRLLLGGDLSVDLNSRAGAALVPSLVGTADRLPEGWRIDGPFPARRGKDGIVRPWVATPRFLLMPPKDADGATVHQAHFRSADPQGGLSDRAPKEPGGDTLPGRPELGDMRPPGGWIDPANLHAVLSGAPQGWRAGGWCCDLPPFVKRESQSGVAIDARTGRTRHGMLYFSEALRFASGSGLLGGFTGTLAPSLSAAALTTGAGQAGRKGRLVRFAKAERLDPDWLAVREGRYLPDRVTEADRFWLVALTPARRSKAAELPIRTPRGSAVSVRVVAALAGPPVVLGGFDLAGGKPRSNWSYHPAGSAWLIQLTGGDDAARAALLRDLHDSHILGDENEAVMGFGHALVGLCERKQEETGS
>NC_016586.1|WP_014188722.1|75483_76479_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTLWTRTAVMGLYTLSPTHVGTGQATGAIDLPIARDAATGFPVLPATSLKGVLRDRFSPDPQPSQSDRDLIIQLFGSELADIGKDSDTGKDSDGDDGGLKPGRLAVTEGRLVAYPVRSLSRPFFHVTCPQILEQLLRDLRATGGPAPSLDLTALDDLRGALASDKALAGKALVLEDLVFAPDTVLAPDGIGAIAAFLAGLLPADEAATRRRLESGLIVIPDADFTALMRSAVPVRARVKLTGGKTTDKWTNPDSGETESGNLWYEETLPSDCLFVALVGQRRDRDRKGATLQTLLDRAANLAVLQVGGHETVGQGLCLCTLEAAAPSGGAR
>NC_016586.1|WP_014188723.1|76475_76913_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MNGTRGTAIHDLKGERARFSFQEVAGWPDGKQRTKLTTRLQGLAVQVHTEGLLVTLAAMMAGDSDDSRLANALSRWLLRESPLRALFDPATAAEAGPRLLLERAAGAGRSDYAALQTETVAFFDMMKLFATALDKSAKHEKGGAG
>NC_016586.1|WP_014188724.1|76909_77989_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MSRLFALAPGGPAGWKAVADQVEAPTANAALVWDRYFPIWTGEPRSPRRWTPIQVRRGDKPEPSPLALFVAAREGAKAQQVAWLSERTARMERTLRTLAAATGQEFLPVEAHTVWRFVMGLGAAHPTGNGFVFDPTTGLPVIPGSAVKGLCRQAAAESGIAPEKIAKWFGPERDRTDNAAAMGCVRFFDAFPSEWPRFTVDIVNGHHGDWYERQARALAGDRTAQREIASGPAETEDPVPAQFLVLGDGVTFRFPLLTPPDIVADVRAVLKDGLDWLGLGAKTAIGYGAFRTGPVPVLPPAKGPGGGSGQQPPPLALKYYYEGDEVRILERWKGGLVLVAYVDDDGDRFEVAERHLTVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016586_1	1.1\|59877\|35\|NC_016586\|PILER-CR	59877-59911	35	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	59877-59911	0	1.0
NC_016586_1	1.2\|59951\|34\|NC_016586\|PILER-CR	59951-59984	34	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	59951-59984	0	1.0
NC_016586_2	2.1\|62674\|38\|NC_016586\|PILER-CR	62674-62711	38	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62674-62711	0	1.0
NC_016586_2	2.2\|62749\|42\|NC_016586\|PILER-CR	62749-62790	42	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62749-62790	0	1.0
NC_016586_2	2.3\|62828\|37\|NC_016586\|PILER-CR	62828-62864	37	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62828-62864	0	1.0
NC_016586_2	2.4\|62902\|36\|NC_016586\|PILER-CR	62902-62937	36	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62902-62937	0	1.0
NC_016586_2	2.5\|62674\|50\|NC_016586\|CRISPRCasFinder,CRT	62674-62723	50	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62674-62723	0	1.0
NC_016586_2	2.6\|62749\|54\|NC_016586\|CRISPRCasFinder,CRT	62749-62802	54	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62749-62802	0	1.0
NC_016586_2	2.7\|62828\|49\|NC_016586\|CRISPRCasFinder,CRT	62828-62876	49	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62828-62876	0	1.0
NC_016586_2	2.8\|62902\|48\|NC_016586\|CRISPRCasFinder,CRT	62902-62949	48	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62902-62949	0	1.0
NC_016586_2	2.9\|62975\|47\|NC_016586\|CRISPRCasFinder,CRT	62975-63021	47	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	62975-63021	0	1.0
NC_016586_2	2.4\|62902\|36\|NC_016586\|PILER-CR	62902-62937	36	NC_016652	Rhodococcus phage REQ2, complete genome	47484-47519	7	0.806
NC_016586_1	1.1\|59877\|35\|NC_016586\|PILER-CR	59877-59911	35	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	276901-276935	10	0.714
NC_016586_1	1.1\|59877\|35\|NC_016586\|PILER-CR	59877-59911	35	NZ_CP044080	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence	234015-234049	10	0.714

1. spacer 1.1|59877|35|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

atacaggcttggtcatgtcgggctccgggaaaaag	CRISPR spacer
atacaggcttggtcatgtcgggctccgggaaaaag	Protospacer
***********************************

2. spacer 1.2|59951|34|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ttcagccgccgtggggggagatcagcggggcttt	CRISPR spacer
ttcagccgccgtggggggagatcagcggggcttt	Protospacer
**********************************

3. spacer 2.1|62674|38|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

atacgcagcagcttcggttcgttgagttggagttcgac	CRISPR spacer
atacgcagcagcttcggttcgttgagttggagttcgac	Protospacer
**************************************

4. spacer 2.2|62749|42|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ccttgggcggtgttggacgagccgttgacgccggtgtcctgc	CRISPR spacer
ccttgggcggtgttggacgagccgttgacgccggtgtcctgc	Protospacer
******************************************

5. spacer 2.3|62828|37|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtcggggcggtcatcgggtgggctccttcgggaaga	CRISPR spacer
ggtcggggcggtcatcgggtgggctccttcgggaaga	Protospacer
*************************************

6. spacer 2.4|62902|36|NC_016586|PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

acgtgccgtccgtggtgtgtgtgggcgaggctgctg	CRISPR spacer
acgtgccgtccgtggtgtgtgtgggcgaggctgctg	Protospacer
************************************

7. spacer 2.5|62674|50|NC_016586|CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

atacgcagcagcttcggttcgttgagttggagttcgacgttccgccggtg	CRISPR spacer
atacgcagcagcttcggttcgttgagttggagttcgacgttccgccggtg	Protospacer
**************************************************

8. spacer 2.6|62749|54|NC_016586|CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ccttgggcggtgttggacgagccgttgacgccggtgtcctgcgttccgctggtg	CRISPR spacer
ccttgggcggtgttggacgagccgttgacgccggtgtcctgcgttccgctggtg	Protospacer
******************************************************

9. spacer 2.7|62828|49|NC_016586|CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtcggggcggtcatcgggtgggctccttcgggaagagttccgccggta	CRISPR spacer
ggtcggggcggtcatcgggtgggctccttcgggaagagttccgccggta	Protospacer
*************************************************

10. spacer 2.8|62902|48|NC_016586|CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

acgtgccgtccgtggtgtgtgtgggcgaggctgctggttccgccgggg	CRISPR spacer
acgtgccgtccgtggtgtgtgtgggcgaggctgctggttccgccgggg	Protospacer
************************************************

11. spacer 2.9|62975|47|NC_016586|CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 0, identity: 1.0

gctcggtcgttcagttcgttgtggtaatcaattgttttacgtcagtc	CRISPR spacer
gctcggtcgttcagttcgttgtggtaatcaattgttttacgtcagtc	Protospacer
***********************************************

12. spacer 2.4|62902|36|NC_016586|PILER-CR matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 7, identity: 0.806

acgtgccgtccgtggtgtgtgtgggcga----ggctgctg	CRISPR spacer
tcgtgccatccgtggagtgtgtgggcgatgagggct----	Protospacer
 ******.******* ************    ****

13. spacer 1.1|59877|35|NC_016586|PILER-CR matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

atacaggcttggtcatgtcgggctccgggaaaaag	CRISPR spacer
gcatgggatgggtcatgtcgggctccgggacgggg	Protospacer
..*..** * ******************** ...*

14. spacer 1.1|59877|35|NC_016586|PILER-CR matches to NZ_CP044080 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

atacaggcttggtcatgtcgggctccgggaaaaag	CRISPR spacer
gcatgggatgggtcatgtcgggctccgggacgggg	Protospacer
..*..** * ******************** ...*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17044 : 171590

122

Tupanvirus(12.0%)

transposase,terminase,portal,head,integrase

attL 16748:16796|attR 31899:31947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
16748:16796	attL	NA	NA	NA	NA
WP_162488308.1\|17044_17446_-	hypothetical protein	A0A0F7L5V0	uncultured_marine_virus	3.9e-06	27.1
WP_044552057.1\|17485_17779_-	hypothetical protein	NA	NA	NA	NA
WP_014188670.1\|17781_18129_-	DUF2190 family protein	A0A076G9K1	Pseudoalteromonas_phage	6.0e-11	40.9
WP_081505982.1\|18132_18348_-	hypothetical protein	K4HZB1	Acidithiobacillus_phage	4.1e-10	50.0
WP_044552060.1\|18350_20270_-\|head	Mu-like prophage major head subunit gpT family protein	A0A076G7Y9	Pseudoalteromonas_phage	2.3e-51	31.0
WP_014188672.1\|20262_21726_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	2.8e-94	41.0
WP_014188673.1\|21849_23772_-\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	9.4e-130	39.3
WP_014188674.1\|23768_24365_-	hypothetical protein	NA	NA	NA	NA
WP_014188675.1\|24485_25214_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	9.6e-27	35.4
WP_014188676.1\|25223_25571_-	hypothetical protein	NA	NA	NA	NA
WP_014188677.1\|25753_27400_-	hypothetical protein	A0A1P8DIJ9	Virus_Rctr197k	9.8e-27	29.0
WP_014188678.1\|27536_27995_-	hypothetical protein	NA	NA	NA	NA
WP_044552418.1\|27987_28263_-	hypothetical protein	NA	NA	NA	NA
WP_162488309.1\|28298_29030_-	hypothetical protein	NA	NA	NA	NA
WP_162488310.1\|28995_29412_-	hypothetical protein	NA	NA	NA	NA
WP_162488311.1\|29408_29891_-	hypothetical protein	NA	NA	NA	NA
WP_044552067.1\|30123_30342_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014188681.1\|30343_31498_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.5e-10	23.5
WP_014188682.1\|31525_31825_+	hypothetical protein	NA	NA	NA	NA
WP_081505983.1\|31902_32760_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
31899:31947	attR	NA	NA	NA	NA
WP_014188655.1\|33067_33856_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.7e-24	32.4
WP_014188654.1\|33852_35328_-\|transposase	IS21-like element ISAli13 family transposase	NA	NA	NA	NA
WP_081506000.1\|35621_35864_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_014188683.1\|36158_36332_+	hypothetical protein	NA	NA	NA	NA
WP_014188684.1\|36396_36630_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044552424.1\|36831_37239_+	helix-turn-helix domain-containing protein	Q8W6G2	Sinorhizobium_phage	1.3e-17	40.8
WP_044552426.1\|37223_37475_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014188687.1\|37866_38304_+	hypothetical protein	NA	NA	NA	NA
WP_014188688.1\|38513_38786_-	helix-turn-helix transcriptional regulator	A0A0A8WIP7	Clostridium_phage	8.6e-05	36.7
WP_014188689.1\|38905_39175_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_162488347.1\|39493_40165_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_014188692.1\|40300_40552_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014188694.1\|41646_42285_+	AAA family ATPase	A0A2H4JGZ2	uncultured_Caudovirales_phage	2.5e-31	41.5
WP_014188695.1\|42281_42518_+	hypothetical protein	NA	NA	NA	NA
WP_014188696.1\|42514_43168_+	AAA family ATPase	NA	NA	NA	NA
WP_014188697.1\|43516_44257_+	hypothetical protein	NA	NA	NA	NA
WP_044552073.1\|44271_44613_+	hypothetical protein	NA	NA	NA	NA
WP_044552076.1\|44609_45125_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_014188698.1\|45121_46153_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_014188699.1\|46136_46427_+	hypothetical protein	NA	NA	NA	NA
WP_014188700.1\|46430_46751_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_014188701.1\|46767_49245_+	conjugal transfer protein TrbE-like	NA	NA	NA	NA
WP_014188702.1\|49241_50141_+	hypothetical protein	NA	NA	NA	NA
WP_014188703.1\|50143_50338_+	hypothetical protein	NA	NA	NA	NA
WP_014188704.1\|50344_51589_+	type IV secretion system protein	NA	NA	NA	NA
WP_014188706.1\|52357_53314_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_014188707.1\|53310_54309_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_014188708.1\|54346_55210_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014188709.1\|55474_55915_+	hypothetical protein	NA	NA	NA	NA
WP_014188710.1\|55911_58521_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_162488312.1\|58542_59529_-	CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6	NA	NA	NA	NA
WP_044552430.1\|60094_60361_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_014188713.1\|60396_62415_-	CRISPR-associated endonuclease Cas1	H7BUN7	unidentified_phage	6.6e-09	26.0
WP_014188715.1\|63357_64479_-	TIGR03986 family CRISPR-associated RAMP protein	NA	NA	NA	NA
WP_162488313.1\|65414_67100_+	SIR2 family protein	NA	NA	NA	NA
WP_014188717.1\|67123_67777_+	hypothetical protein	NA	NA	NA	NA
WP_014188718.1\|67773_69801_+	AAA family ATPase	NA	NA	NA	NA
WP_014188719.1\|69825_71010_+	type III-B CRISPR module RAMP protein Cmr1	NA	NA	NA	NA
WP_014188720.1\|71006_74255_+	type III-B CRISPR-associated protein Cas10/Cmr2	NA	NA	NA	NA
WP_014188721.1\|74251_75487_+	hypothetical protein	NA	NA	NA	NA
WP_014188722.1\|75483_76479_+	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_014188723.1\|76475_76913_+	type III-B CRISPR module-associated protein Cmr5	NA	NA	NA	NA
WP_014188724.1\|76909_77989_+	type III-B CRISPR module RAMP protein Cmr6	NA	NA	NA	NA
WP_076611116.1\|78304_79370_+\|transposase	IS630-like element ISAli3 family transposase	NA	NA	NA	NA
WP_081505986.1\|79394_79550_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081505987.1\|79640_79829_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_193353755.1\|79813_80275_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_085938455.1\|80311_81543_-\|transposase	IS3-like element ISAli4 family transposase	Q8W6R2	Burkholderia_virus	2.0e-109	70.7
WP_014188726.1\|81643_91786_-	hypothetical protein	NA	NA	NA	NA
WP_014188727.1\|91804_93031_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_014188728.1\|93053_96305_-	hypothetical protein	NA	NA	NA	NA
WP_044552101.1\|96309_96753_-	hypothetical protein	NA	NA	NA	NA
WP_162488314.1\|96802_97159_-	hypothetical protein	NA	NA	NA	NA
WP_014188731.1\|97933_99460_-\|transposase	IS66-like element ISAli15 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.8e-98	39.7
WP_044552105.1\|99529_99883_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.6e-27	52.4
WP_014188733.1\|99882_100266_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_076611116.1\|101424_102491_-\|transposase	IS630-like element ISAli3 family transposase	NA	NA	NA	NA
WP_162488315.1\|102637_103381_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_162488317.1\|103471_103873_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162488303.1\|104236_104401_+	hypothetical protein	NA	NA	NA	NA
WP_162488318.1\|104941_109654_+	SIR2 family protein	NA	NA	NA	NA
WP_044552116.1\|109792_112267_+	hypothetical protein	NA	NA	NA	NA
WP_162488319.1\|112459_112729_+	hypothetical protein	NA	NA	NA	NA
WP_052315468.1\|113065_113584_+	glycosyltransferase	NA	NA	NA	NA
WP_162488320.1\|113719_114811_+	hypothetical protein	NA	NA	NA	NA
WP_044552128.1\|115080_115731_-	hypothetical protein	NA	NA	NA	NA
WP_014188737.1\|115838_116633_-	hypothetical protein	NA	NA	NA	NA
WP_014188738.1\|116748_117186_-	hypothetical protein	NA	NA	NA	NA
WP_085938487.1\|118076_119142_+\|transposase	IS630-like element ISAli3 family transposase	NA	NA	NA	NA
WP_014188740.1\|119633_120332_-	streptomycin biosynthesis enzyme StrG	NA	NA	NA	NA
WP_014188741.1\|120373_122770_-	hypothetical protein	NA	NA	NA	NA
WP_162488321.1\|122837_124736_-	hypothetical protein	NA	NA	NA	NA
WP_014188743.1\|124817_126527_-	hypothetical protein	NA	NA	NA	NA
WP_081505991.1\|126629_128342_-	hypothetical protein	NA	NA	NA	NA
WP_014188746.1\|129566_131396_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.4e-27	30.5
WP_044552133.1\|131392_133126_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	32.8
WP_014188748.1\|133224_134013_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.2e-16	32.5
WP_014188749.1\|134009_135077_-	iron ABC transporter permease	NA	NA	NA	NA
WP_014188750.1\|135073_136240_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044552138.1\|136251_138489_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_014188752.1\|138728_139625_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014188753.1\|140189_141851_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	9.0e-12	25.3
WP_014188754.1\|141859_145297_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.1e-56	29.5
WP_014188755.1\|145293_150783_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	6.1e-41	27.3
WP_014188756.1\|150772_151909_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_044552143.1\|151923_152712_+	thioesterase	NA	NA	NA	NA
WP_014188758.1\|152767_153070_+	isochorismate lyase	NA	NA	NA	NA
WP_014188759.1\|153083_154535_+	isochorismate synthase	NA	NA	NA	NA
WP_014188760.1\|154626_155247_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081505993.1\|155308_156268_+	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA
WP_014188762.1\|156272_157202_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_162488349.1\|157805_159026_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014188764.1\|159036_162210_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.3e-53	22.4
WP_044552481.1\|162227_163697_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_162488304.1\|163805_164153_+	hypothetical protein	NA	NA	NA	NA
WP_014188766.1\|164234_165515_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_014188767.1\|165557_166112_-	TRAP transporter small permease	NA	NA	NA	NA
WP_014188768.1\|166195_167134_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014188769.1\|167206_168118_-	ribokinase	NA	NA	NA	NA
WP_014188770.1\|168188_169211_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_162488323.1\|169425_170514_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_085938457.1\|170839_171590_+\|transposase	IS5-like element ISAli9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.3e-30	52.6

DBSCAN-SWA_2

218336 : 225572

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014188808.1\|218336_220031_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-180	61.0
WP_014188809.1\|220027_220747_+	two-component system response regulator BtsR	A0A2R2ZGH8	Clostridioides_phage	2.7e-05	23.9
WP_014188810.1\|220774_223357_-	extracellular solute-binding protein	W8CYF6	Bacillus_phage	3.3e-13	27.8
WP_014188811.1\|223328_224003_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-25	33.0
WP_014188812.1\|224037_224865_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	8.7e-08	28.1
WP_014188813.1\|224891_225572_-	TerC family protein	W8EBD0	Pseudomonas_phage	2.1e-12	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage