CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009567	Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_02, complete sequence	0 crisprs	DEDDh	0	0
NZ_CP009566	Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCVM22462, complete sequence	0 crisprs	DEDDh	0	8
NZ_CP010280	Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,csa3,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,c2c9_V-U4	41	11
NZ_CP009568	Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 plasmid pCFSAN000934_03, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010280_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010280_1

2415630-2417244

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP010280_1

>merge|NZ_CP010280|1|2415630-2417244|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGATGAGCAACACGCCCGCACTGGCGTAACTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGGCTGGAGATATGGGAGTACCTTTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACATATCCAGCCTGCGATAGAGATAGTTTTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGTGGCAAAATATTGTCAGCGGGATTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACCAATCTGTAAATATTTTTCATCTGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCGCTCTCGATCGTCGCGGCATACATCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGATTGCACAGGGGGTGAGTATGGAACAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACACAATACTGACGTGTTTCACGCTGCTGCCGTCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAACAGTAATTGCAAAATCCTGTTGTTTAATCGGTTTATCCCCGCTGGCGCGGGGAACACGGGATCAGCACCGACAACCTAAAACCACTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGTGTCGGAATATGCGGGCTGATTTTCGTCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTAATTAATGAGAATTAGACGCAACATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACAATTACGGTCCCTATTCCCTCAGTCCTCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCACGGCGTTTGCCCTCGTCGGTTATTGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGATTGTCAAAATCAAAAAACAGGCCGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGAGCGAAGGTGCAACATTATCACCATATTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACAATGTTTCCCGCACCCAAATGCGATCGCCAGGCGGTTTATCCCCGCTGGCGCGGGGAACACAATGATAAATTATCCGTTACCGCAATAACAATCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGCGTAGTTGATCACGATTTCCGGGATAATCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTTTCTTCGGTGCCCAACCGCAGCCTAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTTATAGAGTTGACTCAAATTCATTTTTATTCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAGCCGGGTCTGTATCGAATACCAGCCCCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTAAAATTGGCATCATAGATGGTTTGATAGTCCCGATTTATCCCCGCTGGCGCGGGGAACACATGCAATGGGGAATAAGTGGCGGGTAAATCAACGGTTTATCCCCGCTGGCGCGGGGAACACCCGTCGCCGCACGCAAACAATCCGGGCGCCCACGGTTTATCCCCGCTGGCGCGGGGAACACTCAATAACCCCTTTTAAATACTGCCGTTCCAGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|1|1|2415630-2417244|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GATGAGCAACACGCCCGCACTGGCGTAACTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGGCTGGAGATATGGGAGTACCTTTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCCAGCCTGCGATAGAGATAGTTTTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAAAATATTGTCAGCGGGATTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACCAATCTGTAAATATTTTTCATCTGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTCTCGATCGTCGCGGCATACATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGCACAGGGGGTGAGTATGGAACAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATACTGACGTGTTTCACGCTGCTGCCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAACAGTAATTGCAAAATCCTGTTGTTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGATCAGCACCGACAACCTAAAACCACTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTGTCGGAATATGCGGGCTGATTTTCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTAATTAATGAGAATTAGACGCAACATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACAATTACGGTCCCTATTCCCTCAGTCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCACGGCGTTTGCCCTCGTCGGTTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGTCAAAATCAAAAAACAGGCCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGCGAAGGTGCAACATTATCACCATATTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGTTTCCCGCACCCAAATGCGATCGCCAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGATAAATTATCCGTTACCGCAATAACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGCGTAGTTGATCACGATTTCCGGGATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTCTTCGGTGCCCAACCGCAGCCTAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTATAGAGTTGACTCAAATTCATTTTTATTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCCGGGTCTGTATCGAATACCAGCCCCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAATTGGCATCATAGATGGTTTGATAGTCC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGCAATGGGGAATAAGTGGCGGGTAAATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTCGCCGCACGCAAACAATCCGGGCGCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAATAACCCCTTTTAAATACTGCCGTTCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|1|1|2415630-2417244|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GATGAGCAACACGCCCGCACTGGCGTAACTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGGCTGGAGATATGGGAGTACCTTTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCCAGCCTGCGATAGAGATAGTTTTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAAAATATTGTCAGCGGGATTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACCAATCTGTAAATATTTTTCATCTGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTCTCGATCGTCGCGGCATACATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGCACAGGGGGTGAGTATGGAACAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATACTGACGTGTTTCACGCTGCTGCCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAACAGTAATTGCAAAATCCTGTTGTTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGATCAGCACCGACAACCTAAAACCACTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTGTCGGAATATGCGGGCTGATTTTCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTAATTAATGAGAATTAGACGCAACATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACAATTACGGTCCCTATTCCCTCAGTCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCACGGCGTTTGCCCTCGTCGGTTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGTCAAAATCAAAAAACAGGCCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGCGAAGGTGCAACATTATCACCATATTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGTTTCCCGCACCCAAATGCGATCGCCAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGATAAATTATCCGTTACCGCAATAACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGCGTAGTTGATCACGATTTCCGGGATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTCTTCGGTGCCCAACCGCAGCCTAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTATAGAGTTGACTCAAATTCATTTTTATTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCCGGGTCTGTATCGAATACCAGCCCCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAATTGGCATCATAGATGGTTTGATAGTCC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGCAATGGGGAATAAGTGGCGGGTAAATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTCGCCGCACGCAAACAATCCGGGCGCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAATAACCCCTTTTAAATACTGCCGTTCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|1|1|2415632-2417244|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACGA	TGAGCAACACGCCCGCACTGGCGTAACTTACG
GTTTATCCCCGCTGGCGCGGGGAACACCG	TTGGCTGGAGATATGGGAGTACCTTTGGAACG
GTTTATCCCCGCTGGCGCGGGGAACACAT	ATCCAGCCTGCGATAGAGATAGTTTTCCGGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GGTGGCAAAATATTGTCAGCGGGATTTTTTCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TACCAATCTGTAAATATTTTTCATCTGCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	TTCGCTCTCGATCGTCGCGGCATACATCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	TTGCACAGGGGGTGAGTATGGAACAGCTGACG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TACTGACGTGTTTCACGCTGCTGCCGTCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACCC	AACAGTAATTGCAAAATCCTGTTGTTTAATCG
GTTTATCCCCGCTGGCGCGGGGAACACGG	GATCAGCACCGACAACCTAAAACCACTGTTCG
GTTTATCCCCGCTGGCGCGGGGAACACTG	TGTCGGAATATGCGGGCTGATTTTCGTCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TTAATTAATGAGAATTAGACGCAACATTGTCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TACAATTACGGTCCCTATTCCCTCAGTCCTCG
GTTTATCCCCGCTGGCGCGGGGAACACCG	CGCACGGCGTTTGCCCTCGTCGGTTATTGGCG
GTTTATCCCCGCTGGCGCGGGGAACACCT	GATTGTCAAAATCAAAAAACAGGCCGAGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GCGAAGGTGCAACATTATCACCATATTCGGCG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TGTTTCCCGCACCCAAATGCGATCGCCAGGCG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TGATAAATTATCCGTTACCGCAATAACAATCG
GTTTATCCCCGCTGGCGCGGGGAACACCC	TGCGTAGTTGATCACGATTTCCGGGATAATCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TTTTCTTCGGTGCCCAACCGCAGCCTAACGCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	ATAGAGTTGACTCAAATTCATTTTTATTCCCG
GTTTATCCCCGCTGGCGCGGGGAACACTA	GCCGGGTCTGTATCGAATACCAGCCCCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACTA	AAATTGGCATCATAGATGGTTTGATAGTCCCG
ATTTATCCCCGCTGGCGCGGGGAACACAT	GCAATGGGGAATAAGTGGCGGGTAAATCAACG
GTTTATCCCCGCTGGCGCGGGGAACACCC	GTCGCCGCACGCAAACAATCCGGGCGCCCACG
GTTTATCCCCGCTGGCGCGGGGAACACTC	AATAACCCCTTTTAAATACTGCCGTTCCAGCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010280.1\|WP_000372384.1\|2413409_2414318_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010280.1\|WP_000281416.1\|2418541_2419246_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP010280.1\|WP_001219244.1\|2409284_2409764_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP010280.1\|WP_000490481.1\|2414568_2415615_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010280.1\|WP_000935104.1\|2421061_2421664_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP010280.1\|WP_001290654.1\|2428632_2430345_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP010280.1\|WP_001118109.1\|2410994_2411351_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010280.1\|WP_000080403.1\|2427822_2428557_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010280.1\|WP_000517480.1\|2410492_2410804_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010280.1\|WP_001173663.1\|2411368_2411974_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010280.1\|WP_000062285.1\|2417328_2417622_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010280.1\|WP_000366318.1\|2421680_2423216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010280.1\|WP_000134243.1\|2408238_2409288_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010280.1\|WP_001670772.1\|2426656_2427610_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP010280.1\|WP_000741641.1\|2409763_2410474_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010280.1\|WP_000118676.1\|2417624_2418542_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010280.1\|WP_001092268.1\|2411960_2413400_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010280.1\|WP_001221538.1\|2407496_2408258_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010280.1\|WP_001670238.1\|2419980_2421039_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP010280.1\|WP_000666422.1\|2419245_2419971_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
NZ_CP010280.1\|WP_000372384.1\|2413409_2414318_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010280.1\|WP_000281416.1\|2418541_2419246_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
NZ_CP010280.1\|WP_001219244.1\|2409284_2409764_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP010280.1\|WP_000490481.1\|2414568_2415615_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010280.1\|WP_000935104.1\|2421061_2421664_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP010280.1\|WP_001290654.1\|2428632_2430345_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP010280.1\|WP_001118109.1\|2410994_2411351_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP010280.1\|WP_000080403.1\|2427822_2428557_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP010280.1\|WP_000517480.1\|2410492_2410804_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP010280.1\|WP_001173663.1\|2411368_2411974_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP010280.1\|WP_000062285.1\|2417328_2417622_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
NZ_CP010280.1\|WP_000366318.1\|2421680_2423216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010280.1\|WP_000134243.1\|2408238_2409288_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010280.1\|WP_001670772.1\|2426656_2427610_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP010280.1\|WP_000741641.1\|2409763_2410474_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
NZ_CP010280.1\|WP_000118676.1\|2417624_2418542_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
NZ_CP010280.1\|WP_001092268.1\|2411960_2413400_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010280.1\|WP_001221538.1\|2407496_2408258_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP010280.1\|WP_001670238.1\|2419980_2421039_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP010280.1\|WP_000666422.1\|2419245_2419971_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47

>NZ_CP010280.1|WP_000490481.1|2414568_2415615_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP010280.1|WP_000372384.1|2413409_2414318_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP010280.1|WP_001092268.1|2411960_2413400_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP010280.1|WP_001173663.1|2411368_2411974_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP010280.1|WP_001118109.1|2410994_2411351_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP010280.1|WP_000517480.1|2410492_2410804_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP010280.1|WP_000741641.1|2409763_2410474_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP010280.1|WP_001219244.1|2409284_2409764_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP010280.1|WP_000134243.1|2408238_2409288_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP010280.1|WP_001221538.1|2407496_2408258_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP010280.1|WP_000062285.1|2417328_2417622_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP010280.1|WP_000118676.1|2417624_2418542_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NZ_CP010280.1|WP_000281416.1|2418541_2419246_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP010280.1|WP_000666422.1|2419245_2419971_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP010280.1|WP_001670238.1|2419980_2421039_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP010280.1|WP_000935104.1|2421061_2421664_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP010280.1|WP_000366318.1|2421680_2423216_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP010280.1|WP_001670772.1|2426656_2427610_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP010280.1|WP_000080403.1|2427822_2428557_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP010280.1|WP_001290654.1|2428632_2430345_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_CP010280_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010280_2

2433913-2435099

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
NCGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

19 spacers

cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP010280_2

>merge|NZ_CP010280|2|2433913-2435099|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACACGGCAACGGATGCGACCGCCAGCGCGATCCCCGGTTTATCCCCGCTGCGCGGGGAACACTTGATGAAAGTTCATCTAATAATGATTGTGCTGGGTTTATCCCCGCTGGCGCAGGGAACACGAACCGCTTTTATTTTTAGACATAGAGCACCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCCACCCGGACAACAAAATGAATCCCGATGATCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAAACTGCTTGCGGTAAGAAACTGTTGCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCACTCCCGACCGTTGAGGTGACAAAACCCTCGGTTTATCCCCGCTGGCGCGGGGAACACAACCCTTACGGTTATATGAAAGAAGATTTTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGGCATATCAGGAGTTGGAGCAACCAGCGAGACGGTTTATCCCCGCTGGCGCGGGGAACACTGACCTGAAGAAATAACATTGACTCCAAACTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTTCTCTACATTTAGCTATAGACGTTAGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCCTGACTTTATCAAGCAGTGCATACTGACCGGTTTATCCCCGCTGGCGCGGGGAACACAAACTCTGGGCGCTCGAATGGCTGTCCTATTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCGGTGTAAATTTTTACGTTTTTCATATCTCGGTTTATCCCCGCTGGCGCGGGGAACACGAGACTTTTCACACTGATAATGTTGTTATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTGTCGCGGTAGTATTTAGTCGAAAGCATGACGGTTTATCCCCGCTGGCGCTGGGAACACACGGCCTGATTTAGAGTTAAACATGGTCACGCCGGTTTATCCCCGCTGGCGCGGGGAACACTACGGGTTGTACCATGCCACTGGCGTTTTGTGCGGTTTATCCCCGCTGGCGCGGGGAACACATGGCGTGTCTCGATTGCGCGCTGCCGCACTGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCCCATTTAGCGAGTTCTTTTGCCGCCAGCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|2|2|2433913-2435099|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCC
CCGGTTTATCCCCGCTGCGCGGGGAACAC	TTGATGAAAGTTCATCTAATAATGATTGTGCT
GGGTTTATCCCCGCTGGCGCAGGGAACAC	GAACCGCTTTTATTTTTAGACATAGAGCACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACCCGGACAACAAAATGAATCCCGATGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAAACTGCTTGCGGTAAGAAACTGTTGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCACTCCCGACCGTTGAGGTGACAAAACCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCTTACGGTTATATGAAAGAAGATTTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGCATATCAGGAGTTGGAGCAACCAGCGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCTGAAGAAATAACATTGACTCCAAACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTCTCTACATTTAGCTATAGACGTTAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCTGACTTTATCAAGCAGTGCATACTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAACTCTGGGCGCTCGAATGGCTGTCCTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCGGTGTAAATTTTTACGTTTTTCATATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGACTTTTCACACTGATAATGTTGTTATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGTCGCGGTAGTATTTAGTCGAAAGCATGA
CGGTTTATCCCCGCTGGCGCTGGGAACAC	ACGGCCTGATTTAGAGTTAAACATGGTCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGGGTTGTACCATGCCACTGGCGTTTTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGCGTGTCTCGATTGCGCGCTGCCGCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCATTTAGCGAGTTCTTTTGCCGCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|2|2|2433913-2435099|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCC
CCGGTTTATCCCCGCTGCGCGGGGAACAC	TTGATGAAAGTTCATCTAATAATGATTGTGCT
GGGTTTATCCCCGCTGGCGCAGGGAACAC	GAACCGCTTTTATTTTTAGACATAGAGCACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACCCGGACAACAAAATGAATCCCGATGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAAACTGCTTGCGGTAAGAAACTGTTGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCACTCCCGACCGTTGAGGTGACAAAACCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCTTACGGTTATATGAAAGAAGATTTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGCATATCAGGAGTTGGAGCAACCAGCGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCTGAAGAAATAACATTGACTCCAAACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTCTCTACATTTAGCTATAGACGTTAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCTGACTTTATCAAGCAGTGCATACTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAACTCTGGGCGCTCGAATGGCTGTCCTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCGGTGTAAATTTTTACGTTTTTCATATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGACTTTTCACACTGATAATGTTGTTATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGTCGCGGTAGTATTTAGTCGAAAGCATGA
CGGTTTATCCCCGCTGGCGCTGGGAACAC	ACGGCCTGATTTAGAGTTAAACATGGTCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGGGTTGTACCATGCCACTGGCGTTTTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGCGTGTCTCGATTGCGCGCTGCCGCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCATTTAGCGAGTTCTTTTGCCGCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010280|2|2|2433974-2435099|PILER-CR
CGGTTTATCCCCGCTGCGCGGGGAACACT	TGATGAAAGTTCATCTAATAATGATTGTGCTG
GGTTTATCCCCGCTGGCGCAGGGAACACG	AACCGCTTTTATTTTTAGACATAGAGCACCGC
GGTTTATCCCCGCTGGCGCGGGGAACACG	CCACCCGGACAACAAAATGAATCCCGATGATC
GGTTTATCCCCGCTGGCGCGGGGAACACT	TCAAACTGCTTGCGGTAAGAAACTGTTGCACC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GCACTCCCGACCGTTGAGGTGACAAAACCCTC
GGTTTATCCCCGCTGGCGCGGGGAACACA	ACCCTTACGGTTATATGAAAGAAGATTTTTAC
GGTTTATCCCCGCTGGCGCGGGGAACACC	GGCATATCAGGAGTTGGAGCAACCAGCGAGAC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GACCTGAAGAAATAACATTGACTCCAAACTGC
GGTTTATCCCCGCTGGCGCGGGGAACACG	TTTTCTCTACATTTAGCTATAGACGTTAGTTC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GGCCTGACTTTATCAAGCAGTGCATACTGACC
GGTTTATCCCCGCTGGCGCGGGGAACACA	AACTCTGGGCGCTCGAATGGCTGTCCTATTGC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GGCGGTGTAAATTTTTACGTTTTTCATATCTC
GGTTTATCCCCGCTGGCGCGGGGAACACG	AGACTTTTCACACTGATAATGTTGTTATTTTC
GGTTTATCCCCGCTGGCGCGGGGAACACG	TTGTCGCGGTAGTATTTAGTCGAAAGCATGAC
GGTTTATCCCCGCTGGCGCTGGGAACACA	CGGCCTGATTTAGAGTTAAACATGGTCACGCC
GGTTTATCCCCGCTGGCGCGGGGAACACT	ACGGGTTGTACCATGCCACTGGCGTTTTGTGC
GGTTTATCCCCGCTGGCGCGGGGAACACA	TGGCGTGTCTCGATTGCGCGCTGCCGCACTGC
GGTTTATCCCCGCTGGCGCGGGGAACACT	TCCCATTTAGCGAGTTCTTTTGCCGCCAGCAC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010280.1\|WP_000210858.1\|2437583_2439221_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010280.1\|WP_001199961.1\|2435395_2436067_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010280.1\|WP_001670772.1\|2426656_2427610_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP010280.1\|WP_000366318.1\|2421680_2423216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010280.1\|WP_001044459.1\|2444236_2445010_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP010280.1\|WP_001290654.1\|2428632_2430345_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP010280.1\|WP_000080403.1\|2427822_2428557_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010280.1\|WP_000108313.1\|2432567_2432930_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP010280.1\|WP_000981807.1\|2441524_2444224_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP010280.1\|WP_001208002.1\|2433017_2433815_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP010280.1\|WP_000210923.1\|2430344_2432144_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP010280.1\|WP_000036734.1\|2436202_2437501_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP010280.1\|WP_000842512.1\|2440857_2441445_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP010280.1\|WP_001079642.1\|2446017_2446554_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP010280.1\|WP_000935104.1\|2421061_2421664_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP010280.1\|WP_000832396.1\|2445550_2446021_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP010280.1\|WP_000210451.1\|2439448_2440249_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010280.1\|WP_001670238.1\|2419980_2421039_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP010280.1\|WP_000666422.1\|2419245_2419971_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP010280.1\|WP_000178270.1\|2445029_2445536_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178

Protein	Function_ID	Function_description	E-value
NZ_CP010280.1\|WP_000210858.1\|2437583_2439221_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010280.1\|WP_001199961.1\|2435395_2436067_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP010280.1\|WP_001670772.1\|2426656_2427610_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP010280.1\|WP_000366318.1\|2421680_2423216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010280.1\|WP_001044459.1\|2444236_2445010_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP010280.1\|WP_001290654.1\|2428632_2430345_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP010280.1\|WP_000080403.1\|2427822_2428557_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP010280.1\|WP_000108313.1\|2432567_2432930_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP010280.1\|WP_000981807.1\|2441524_2444224_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP010280.1\|WP_001208002.1\|2433017_2433815_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP010280.1\|WP_000210923.1\|2430344_2432144_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP010280.1\|WP_000036734.1\|2436202_2437501_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP010280.1\|WP_000842512.1\|2440857_2441445_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP010280.1\|WP_001079642.1\|2446017_2446554_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
NZ_CP010280.1\|WP_000935104.1\|2421061_2421664_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP010280.1\|WP_000832396.1\|2445550_2446021_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP010280.1\|WP_000210451.1\|2439448_2440249_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP010280.1\|WP_001670238.1\|2419980_2421039_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP010280.1\|WP_000666422.1\|2419245_2419971_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NZ_CP010280.1\|WP_000178270.1\|2445029_2445536_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105

>NZ_CP010280.1|WP_001208002.1|2433017_2433815_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP010280.1|WP_000108313.1|2432567_2432930_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP010280.1|WP_000210923.1|2430344_2432144_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP010280.1|WP_001290654.1|2428632_2430345_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP010280.1|WP_000080403.1|2427822_2428557_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP010280.1|WP_001670772.1|2426656_2427610_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP010280.1|WP_000366318.1|2421680_2423216_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP010280.1|WP_000935104.1|2421061_2421664_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP010280.1|WP_001670238.1|2419980_2421039_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP010280.1|WP_000666422.1|2419245_2419971_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP010280.1|WP_001199961.1|2435395_2436067_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010280.1|WP_000036734.1|2436202_2437501_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010280.1|WP_000210858.1|2437583_2439221_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDAQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP010280.1|WP_000210451.1|2439448_2440249_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP010280.1|WP_000842512.1|2440857_2441445_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP010280.1|WP_000981807.1|2441524_2444224_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP010280.1|WP_001044459.1|2444236_2445010_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP010280.1|WP_000178270.1|2445029_2445536_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP010280.1|WP_000832396.1|2445550_2446021_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP010280.1|WP_001079642.1|2446017_2446554_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010280_1	1.1\|2415659\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415659-2415690	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NZ_CP010280_1	1.1\|2415659\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415659-2415690	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NZ_CP010280_1	1.1\|2415659\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415659-2415690	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NZ_CP010280_1	1.27\|2415661\|32\|NZ_CP010280\|PILER-CR	2415661-2415692	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NZ_CP010280_1	1.27\|2415661\|32\|NZ_CP010280\|PILER-CR	2415661-2415692	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NZ_CP010280_1	1.27\|2415661\|32\|NZ_CP010280\|PILER-CR	2415661-2415692	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NZ_CP010280_1	1.17\|2416635\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416635-2416666	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NZ_CP010280_1	1.43\|2416637\|32\|NZ_CP010280\|PILER-CR	2416637-2416668	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90822	5	0.839
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271430	5	0.839
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112053-112083	5	0.839
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224972-225002	5	0.839
NZ_CP010280_1	1.17\|2416635\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416635-2416666	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP010280_1	1.43\|2416637\|32\|NZ_CP010280\|PILER-CR	2416637-2416668	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654403-654433	6	0.806
NZ_CP010280_2	2.7\|2434307\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434307-2434338	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NZ_CP010280_2	2.25\|2434308\|32\|NZ_CP010280\|PILER-CR	2434308-2434339	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NZ_CP010280_1	1.6\|2415964\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415964-2415995	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NZ_CP010280_1	1.6\|2415964\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415964-2415995	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP010280_1	1.32\|2415966\|32\|NZ_CP010280\|PILER-CR	2415966-2415997	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NZ_CP010280_1	1.32\|2415966\|32\|NZ_CP010280\|PILER-CR	2415966-2415997	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP010280_2	2.1\|2433942\|31\|NZ_CP010280\|CRISPRCasFinder,CRT	2433942-2433972	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052325	7	0.774
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NZ_CP010280_2	2.18\|2434978\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434978-2435009	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NZ_CP010280_2	2.36\|2434979\|32\|NZ_CP010280\|PILER-CR	2434979-2435010	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NZ_CP010280_1	1.6\|2415964\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415964-2415995	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NZ_CP010280_1	1.6\|2415964\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415964-2415995	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NZ_CP010280_1	1.32\|2415966\|32\|NZ_CP010280\|PILER-CR	2415966-2415997	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NZ_CP010280_1	1.32\|2415966\|32\|NZ_CP010280\|PILER-CR	2415966-2415997	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NZ_CP010280_2	2.4\|2434124\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434124-2434155	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NZ_CP010280_2	2.5\|2434185\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434185-2434216	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NZ_CP010280_2	2.12\|2434612\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434612-2434643	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NZ_CP010280_2	2.22\|2434125\|32\|NZ_CP010280\|PILER-CR	2434125-2434156	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NZ_CP010280_2	2.23\|2434186\|32\|NZ_CP010280\|PILER-CR	2434186-2434217	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NZ_CP010280_2	2.30\|2434613\|32\|NZ_CP010280\|PILER-CR	2434613-2434644	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NZ_CP010280_1	1.1\|2415659\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415659-2415690	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NZ_CP010280_1	1.15\|2416513\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416513-2416544	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP010280_1	1.21\|2416879\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416879-2416910	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP010280_1	1.25\|2417123\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2417123-2417154	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NZ_CP010280_1	1.25\|2417123\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2417123-2417154	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NZ_CP010280_1	1.25\|2417123\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2417123-2417154	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NZ_CP010280_1	1.25\|2417123\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2417123-2417154	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NZ_CP010280_1	1.26\|2417184\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2417184-2417215	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NZ_CP010280_1	1.27\|2415661\|32\|NZ_CP010280\|PILER-CR	2415661-2415692	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NZ_CP010280_1	1.41\|2416515\|32\|NZ_CP010280\|PILER-CR	2416515-2416546	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP010280_1	1.47\|2416881\|32\|NZ_CP010280\|PILER-CR	2416881-2416912	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP010280_1	1.51\|2417125\|32\|NZ_CP010280\|PILER-CR	2417125-2417156	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NZ_CP010280_1	1.51\|2417125\|32\|NZ_CP010280\|PILER-CR	2417125-2417156	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NZ_CP010280_1	1.51\|2417125\|32\|NZ_CP010280\|PILER-CR	2417125-2417156	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NZ_CP010280_1	1.51\|2417125\|32\|NZ_CP010280\|PILER-CR	2417125-2417156	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NZ_CP010280_1	1.52\|2417186\|32\|NZ_CP010280\|PILER-CR	2417186-2417217	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NZ_CP010280_2	2.7\|2434307\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434307-2434338	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NZ_CP010280_2	2.7\|2434307\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434307-2434338	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NZ_CP010280_2	2.7\|2434307\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434307-2434338	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NZ_CP010280_2	2.10\|2434490\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434490-2434521	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NZ_CP010280_2	2.25\|2434308\|32\|NZ_CP010280\|PILER-CR	2434308-2434339	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NZ_CP010280_2	2.25\|2434308\|32\|NZ_CP010280\|PILER-CR	2434308-2434339	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NZ_CP010280_2	2.25\|2434308\|32\|NZ_CP010280\|PILER-CR	2434308-2434339	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NZ_CP010280_2	2.28\|2434491\|32\|NZ_CP010280\|PILER-CR	2434491-2434522	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NZ_CP010280_1	1.6\|2415964\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2415964-2415995	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688
NZ_CP010280_1	1.14\|2416452\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416452-2416483	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NZ_CP010280_1	1.14\|2416452\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416452-2416483	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NZ_CP010280_1	1.16\|2416574\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416574-2416605	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP010280_1	1.22\|2416940\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416940-2416971	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP010280_1	1.22\|2416940\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2416940-2416971	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP010280_1	1.32\|2415966\|32\|NZ_CP010280\|PILER-CR	2415966-2415997	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688
NZ_CP010280_1	1.40\|2416454\|32\|NZ_CP010280\|PILER-CR	2416454-2416485	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NZ_CP010280_1	1.40\|2416454\|32\|NZ_CP010280\|PILER-CR	2416454-2416485	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NZ_CP010280_1	1.42\|2416576\|32\|NZ_CP010280\|PILER-CR	2416576-2416607	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP010280_1	1.48\|2416942\|32\|NZ_CP010280\|PILER-CR	2416942-2416973	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP010280_1	1.48\|2416942\|32\|NZ_CP010280\|PILER-CR	2416942-2416973	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NZ_CP010280_2	2.2\|2434002\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434002-2434033	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NZ_CP010280_2	2.3\|2434063\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434063-2434094	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NZ_CP010280_2	2.3\|2434063\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434063-2434094	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NZ_CP010280_2	2.3\|2434063\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434063-2434094	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NZ_CP010280_2	2.3\|2434063\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434063-2434094	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NZ_CP010280_2	2.4\|2434124\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434124-2434155	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NZ_CP010280_2	2.11\|2434551\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434551-2434582	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NZ_CP010280_2	2.11\|2434551\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434551-2434582	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NZ_CP010280_2	2.14\|2434734\|32\|NZ_CP010280\|CRISPRCasFinder,CRT	2434734-2434765	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NZ_CP010280_2	2.20\|2434003\|32\|NZ_CP010280\|PILER-CR	2434003-2434034	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NZ_CP010280_2	2.21\|2434064\|32\|NZ_CP010280\|PILER-CR	2434064-2434095	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NZ_CP010280_2	2.21\|2434064\|32\|NZ_CP010280\|PILER-CR	2434064-2434095	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NZ_CP010280_2	2.21\|2434064\|32\|NZ_CP010280\|PILER-CR	2434064-2434095	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NZ_CP010280_2	2.21\|2434064\|32\|NZ_CP010280\|PILER-CR	2434064-2434095	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NZ_CP010280_2	2.22\|2434125\|32\|NZ_CP010280\|PILER-CR	2434125-2434156	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NZ_CP010280_2	2.29\|2434552\|32\|NZ_CP010280\|PILER-CR	2434552-2434583	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NZ_CP010280_2	2.29\|2434552\|32\|NZ_CP010280\|PILER-CR	2434552-2434583	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NZ_CP010280_2	2.32\|2434735\|32\|NZ_CP010280\|PILER-CR	2434735-2434766	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688

1. spacer 1.1|2415659|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

2. spacer 1.1|2415659|32|NZ_CP010280|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

3. spacer 1.1|2415659|32|NZ_CP010280|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

4. spacer 1.27|2415661|32|NZ_CP010280|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

5. spacer 1.27|2415661|32|NZ_CP010280|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

6. spacer 1.27|2415661|32|NZ_CP010280|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

7. spacer 1.17|2416635|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
aaggcctcccgcacccagatgcgatcgcctgg	Protospacer
** *..***********.*********** **

8. spacer 1.43|2416637|32|NZ_CP010280|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
aaggcctcccgcacccagatgcgatcgcctgg	Protospacer
** *..***********.*********** **

9. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

10. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

11. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

12. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

13. spacer 1.17|2416635|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
catgtttcacgcacccagatgcgatcgccgac	Protospacer
 ******* ********.***********..

14. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ttata-gagttgactcaaattcatttttattcc	CRISPR spacer
-tatatcagttgactcaaatacttttttattat	Protospacer
 ****  ************* * ******** .

15. spacer 1.43|2416637|32|NZ_CP010280|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
catgtttcacgcacccagatgcgatcgccgac	Protospacer
 ******* ********.***********..

16. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ttata-gagttgactcaaattcatttttattcc	CRISPR spacer
-tatatcagttgactcaaatacttttttattat	Protospacer
 ****  ************* * ******** .

17. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 6, identity: 0.806

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
cgcgccga-ggaagcgaccgccagcgcgagcc	Protospacer
 .** *.* *** **************** **

18. spacer 2.7|2434307|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

aacccttacggttatatgaaagaagattttta	CRISPR spacer
aatacatacgtttctatgaaagaagattttca	Protospacer
**. * **** ** ****************.*

19. spacer 2.25|2434308|32|NZ_CP010280|PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

aacccttacggttatatgaaagaagattttta	CRISPR spacer
aatacatacgtttctatgaaagaagattttca	Protospacer
**. * **** ** ****************.*

20. spacer 1.6|2415964|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
agcgtggattcaatcgtcgcggcatacatcgc	Protospacer
**. .*  .**.********************

21. spacer 1.6|2415964|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgctcttgttcgtcgcggcatgaatggt	Protospacer
 *********.* ************. ** *.

22. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
gtagggagttacctcaaattcatttttataca	Protospacer
 ** .*****. ***************** *

23. spacer 1.32|2415966|32|NZ_CP010280|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
agcgtggattcaatcgtcgcggcatacatcgc	Protospacer
**. .*  .**.********************

24. spacer 1.32|2415966|32|NZ_CP010280|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgctcttgttcgtcgcggcatgaatggt	Protospacer
 *********.* ************. ** *.

25. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
gtagggagttacctcaaattcatttttataca	Protospacer
 ** .*****. ***************** *

26. spacer 2.1|2433942|31|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
cgggccgaggatgcgaccgcgagcgcgagcc	Protospacer
  *** . ************ ******* **

27. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

28. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

29. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ttgatga--aagttcatctaataatgattgtgct	CRISPR spacer
--catcaccaagttcatctaataattcttgtgtt	Protospacer
   ** *  ****************  *****.*

30. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttttatctgctttcggtaagaatctgttgcca	Protospacer
**. * ****** ********* *******

31. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

32. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

33. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

34. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

35. spacer 2.18|2434978|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

atggcgtgtctcgattgcgcgctgccgcactg	CRISPR spacer
agagcccgtctcgattgctcgctgtcgcaccg	Protospacer
* .** .*********** *****.*****.*

36. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

37. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

38. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ttgatga--aagttcatctaataatgattgtgct	CRISPR spacer
--catcaccaagttcatctaataattcttgtgtt	Protospacer
   ** *  ****************  *****.*

39. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttttatctgctttcggtaagaatctgttgcca	Protospacer
**. * ****** ********* *******

40. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

41. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

42. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

43. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

44. spacer 2.36|2434979|32|NZ_CP010280|PILER-CR matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

atggcgtgtctcgattgcgcgctgccgcactg	CRISPR spacer
agagcccgtctcgattgctcgctgtcgcaccg	Protospacer
* .** .*********** *****.*****.*

45. spacer 1.6|2415964|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

46. spacer 1.6|2415964|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

47. spacer 1.32|2415966|32|NZ_CP010280|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

48. spacer 1.32|2415966|32|NZ_CP010280|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

49. spacer 2.4|2434124|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

gccacc--cggacaacaaaatgaatcccgatgat	CRISPR spacer
--cattaggggacaacaaaatgcatcacgatgac	Protospacer
  **..   ************* *** ******.

50. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aagcagctgcatgcggaaagaaactgttgcaa	Protospacer
    *.**** ***** **************

51. spacer 2.5|2434185|32|NZ_CP010280|CRISPRCasFinder,CRT matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aacaaactgctggcggtcagaaactgaataac	Protospacer
  ********* ***** ********    **

52. spacer 2.12|2434612|32|NZ_CP010280|CRISPRCasFinder,CRT matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

aaactctgggcgctcgaatggctgtcctattg	CRISPR spacer
acggactgggcgctcgaatagctgtcctgtga	Protospacer
* .  **************.********.* .

53. spacer 2.22|2434125|32|NZ_CP010280|PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

gccacc--cggacaacaaaatgaatcccgatgat	CRISPR spacer
--cattaggggacaacaaaatgcatcacgatgac	Protospacer
  **..   ************* *** ******.

54. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aagcagctgcatgcggaaagaaactgttgcaa	Protospacer
    *.**** ***** **************

55. spacer 2.23|2434186|32|NZ_CP010280|PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aacaaactgctggcggtcagaaactgaataac	Protospacer
  ********* ***** ********    **

56. spacer 2.30|2434613|32|NZ_CP010280|PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

aaactctgggcgctcgaatggctgtcctattg	CRISPR spacer
acggactgggcgctcgaatagctgtcctgtga	Protospacer
* .  **************.********.* .

57. spacer 1.1|2415659|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gatgagcaacacgcccgcact---ggcgtaactta	CRISPR spacer
catgagcaacgcgcccgcactcgccgcgcagt---	Protospacer
 *********.**********    ***.*..

58. spacer 1.15|2416513|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgattgtcaaaatcaaaaaacaggccgagtc	CRISPR spacer
gtgtaagtcaaaatgaaagaacaggccgacgg	Protospacer
 **   ******** ***.**********

59. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

60. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

61. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

62. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

63. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

64. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

65. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

66. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

67. spacer 1.21|2416879|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

68. spacer 1.25|2417123|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
ccggccccgcacgcaaacaatccgaccaatgg	Protospacer
*** * ******************. *. . .

69. spacer 1.25|2417123|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

70. spacer 1.25|2417123|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

71. spacer 1.25|2417123|32|NZ_CP010280|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

72. spacer 1.26|2417184|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaccccttttaaatactgccgttccag	CRISPR spacer
ttgcaaaccgcttttaattactgccgtttacg	Protospacer
*..  **** ******* **********.  *

73. spacer 1.27|2415661|32|NZ_CP010280|PILER-CR matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gatgagcaacacgcccgcact---ggcgtaactta	CRISPR spacer
catgagcaacgcgcccgcactcgccgcgcagt---	Protospacer
 *********.**********    ***.*..

74. spacer 1.41|2416515|32|NZ_CP010280|PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgattgtcaaaatcaaaaaacaggccgagtc	CRISPR spacer
gtgtaagtcaaaatgaaagaacaggccgacgg	Protospacer
 **   ******** ***.**********

75. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

76. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

77. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

78. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

79. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

80. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

81. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

82. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

83. spacer 1.47|2416881|32|NZ_CP010280|PILER-CR matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

84. spacer 1.51|2417125|32|NZ_CP010280|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
ccggccccgcacgcaaacaatccgaccaatgg	Protospacer
*** * ******************. *. . .

85. spacer 1.51|2417125|32|NZ_CP010280|PILER-CR matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

86. spacer 1.51|2417125|32|NZ_CP010280|PILER-CR matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

87. spacer 1.51|2417125|32|NZ_CP010280|PILER-CR matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

88. spacer 1.52|2417186|32|NZ_CP010280|PILER-CR matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaccccttttaaatactgccgttccag	CRISPR spacer
ttgcaaaccgcttttaattactgccgtttacg	Protospacer
*..  **** ******* **********.  *

89. spacer 2.7|2434307|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

90. spacer 2.7|2434307|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

91. spacer 2.7|2434307|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

92. spacer 2.10|2434490|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

gttttctctacatttagctatagacgttagtt	CRISPR spacer
attttctccacttttagctatagaacctttta	Protospacer
.*******.** ************  .*  *

93. spacer 2.25|2434308|32|NZ_CP010280|PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

94. spacer 2.25|2434308|32|NZ_CP010280|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

95. spacer 2.25|2434308|32|NZ_CP010280|PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

96. spacer 2.28|2434491|32|NZ_CP010280|PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

gttttctctacatttagctatagacgttagtt	CRISPR spacer
attttctccacttttagctatagaacctttta	Protospacer
.*******.** ************  .*  *

97. spacer 1.6|2415964|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
ttttcggtatcgatcgtcgcggcatggacaaa	Protospacer
  **** * ****************. *. .

98. spacer 1.14|2416452|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

99. spacer 1.14|2416452|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

100. spacer 1.16|2416574|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

gagcgaaggtgcaacattatcaccatattcgg	CRISPR spacer
ccaagacggtgaaacattatcaccataagtag	Protospacer
  . ** **** ***************  ..*

101. spacer 1.22|2416940|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

102. spacer 1.22|2416940|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

103. spacer 1.32|2415966|32|NZ_CP010280|PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
ttttcggtatcgatcgtcgcggcatggacaaa	Protospacer
  **** * ****************. *. .

104. spacer 1.40|2416454|32|NZ_CP010280|PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

105. spacer 1.40|2416454|32|NZ_CP010280|PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

106. spacer 1.42|2416576|32|NZ_CP010280|PILER-CR matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

gagcgaaggtgcaacattatcaccatattcgg	CRISPR spacer
ccaagacggtgaaacattatcaccataagtag	Protospacer
  . ** **** ***************  ..*

107. spacer 1.48|2416942|32|NZ_CP010280|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

108. spacer 1.48|2416942|32|NZ_CP010280|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

109. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
ttgttgaaaattcatctaataatgccataaga	Protospacer
*** *****.************** .   .

110. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

111. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

112. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

113. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

114. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

115. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

116. spacer 2.2|2434002|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

117. spacer 2.3|2434063|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

118. spacer 2.3|2434063|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

119. spacer 2.3|2434063|32|NZ_CP010280|CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

120. spacer 2.3|2434063|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

121. spacer 2.4|2434124|32|NZ_CP010280|CRISPRCasFinder,CRT matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

gccacccggacaacaaaatgaatcccgatgat	CRISPR spacer
ttgatgaatacaacaaaatgaatcctgataat	Protospacer
 . *.  . ****************.***.**

122. spacer 2.11|2434551|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

123. spacer 2.11|2434551|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

124. spacer 2.14|2434734|32|NZ_CP010280|CRISPRCasFinder,CRT matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

gagacttttcacactgataatgttgttatttt	CRISPR spacer
attaaagttgacactgataaggttgttattgc	Protospacer
.  *   ** ********** ********* .

125. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
ttgttgaaaattcatctaataatgccataaga	Protospacer
*** *****.************** .   .

126. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

127. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

128. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

129. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

130. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

131. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

132. spacer 2.20|2434003|32|NZ_CP010280|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

133. spacer 2.21|2434064|32|NZ_CP010280|PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

134. spacer 2.21|2434064|32|NZ_CP010280|PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

135. spacer 2.21|2434064|32|NZ_CP010280|PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

136. spacer 2.21|2434064|32|NZ_CP010280|PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

137. spacer 2.22|2434125|32|NZ_CP010280|PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

gccacccggacaacaaaatgaatcccgatgat	CRISPR spacer
ttgatgaatacaacaaaatgaatcctgataat	Protospacer
 . *.  . ****************.***.**

138. spacer 2.29|2434552|32|NZ_CP010280|PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

139. spacer 2.29|2434552|32|NZ_CP010280|PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

140. spacer 2.32|2434735|32|NZ_CP010280|PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

gagacttttcacactgataatgttgttatttt	CRISPR spacer
attaaagttgacactgataaggttgttattgc	Protospacer
.  *   ** ********** ********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

180231 : 217077

Salmonella_phage(45.61%)

protease,integrase,portal,lysis,terminase,head,tail

attL 180142:180166|attR 217346:217370

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
180142:180166	attL	NA	NA	NA	NA
WP_000533680.1\|180231_181302_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E5M7	Salmonella_phage	3.0e-154	99.6
WP_001556007.1\|181279_181498_-	excisionase	A0A1V0E5M4	Salmonella_phage	5.7e-36	100.0
WP_001060559.1\|181674_182649_-	hypothetical protein	Q5G8V2	Enterobacteria_phage	5.2e-28	44.0
WP_000208026.1\|182718_182952_-	hypothetical protein	A0A1V0E5L6	Salmonella_phage	6.0e-15	91.1
WP_000161224.1\|182955_183174_-	DUF4014 family protein	C6ZR28	Salmonella_phage	7.0e-34	97.2
WP_000065091.1\|183175_183772_-	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	8.7e-42	55.2
WP_020924094.1\|183768_184293_-	hypothetical protein	Q5G8U6	Enterobacteria_phage	1.6e-39	64.8
WP_001214773.1\|184304_184478_-	DUF2737 family protein	A0A2H4FUQ1	Salmonella_phage	2.1e-25	96.5
WP_001111323.1\|184488_184782_-	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
WP_001016182.1\|184797_185346_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_000168278.1\|185842_186301_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.6e-70	89.0
WP_001046987.1\|186301_187009_-	recombinase	B8K1D9	Salmonella_phage	6.7e-134	96.2
WP_000902091.1\|187005_187149_-	hypothetical protein	I6S1M5	Salmonella_phage	4.2e-19	100.0
WP_000156731.1\|187138_187327_-	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_001670815.1\|187307_187481_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	I6R987	Salmonella_phage	8.9e-24	100.0
WP_071882771.1\|187675_188686_-	hypothetical protein	Q5G8T6	Enterobacteria_phage	7.2e-73	80.4
WP_000246166.1\|188769_188964_-	Restriction inhibitor protein ral	A0A2H4FS18	Salmonella_phage	2.5e-30	100.0
WP_000915090.1\|189088_189226_-	hypothetical protein	Q716D9	Shigella_phage	1.3e-22	100.0
WP_000219336.1\|189234_189540_-	hypothetical protein	A5VW99	Enterobacteria_phage	1.3e-25	92.8
WP_000233126.1\|189907_190276_-	hypothetical protein	K7PJJ3	Enterobacteria_phage	1.3e-56	100.0
WP_000428318.1\|190294_191011_-	helix-turn-helix domain-containing protein	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
WP_000620665.1\|191117_191312_+	hypothetical protein	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
WP_001177653.1\|191420_191699_+	transcriptional regulator	Q8VNP9	Enterobacteria_phage	3.6e-43	100.0
WP_000220588.1\|191733_192378_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_000050079.1\|192364_193207_+	replication protein	K7PGT1	Enterobacteria_phage	1.0e-128	94.2
WP_000171135.1\|193209_194055_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	2.1e-110	73.6
WP_000145948.1\|194051_194342_+	hypothetical protein	K7PH23	Enterobacteria_phage	2.5e-50	100.0
WP_001036029.1\|194338_194608_+	hypothetical protein	G9L682	Escherichia_phage	1.9e-44	98.9
WP_000796285.1\|194680_195007_+	hypothetical protein	Q716D0	Shigella_phage	4.2e-59	99.1
WP_000049638.1\|195003_195204_+	hypothetical protein	Q716C9	Shigella_phage	4.6e-32	100.0
WP_000344578.1\|195215_195467_+	hypothetical protein	A0A220NQX3	Salmonella_phage	1.1e-22	64.3
WP_000736889.1\|195691_196129_+	recombination protein NinB	A0A192Y6T2	Salmonella_phage	9.4e-78	98.6
WP_000679702.1\|196125_196299_+	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000113769.1\|196265_196442_+	NinE family protein	Q5G8S3	Enterobacteria_phage	3.0e-27	100.0
WP_000566850.1\|196438_196618_+	protein ninF	I6R994	Salmonella_phage	1.1e-27	94.9
WP_001224087.1\|196592_197201_+	protein ninG	I6S604	Salmonella_phage	2.9e-93	95.0
WP_001028837.1\|197197_197869_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.0e-127	95.5
WP_000512805.1\|197859_198378_+	DUF1133 family protein	Q716B8	Shigella_phage	2.2e-94	98.8
WP_000286100.1\|198841_199045_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_001670814.1\|199022_199520_+	lysozyme RrrD	I6R0P2	Salmonella_phage	9.9e-92	100.0
WP_001670813.1\|199608_200046_+\|lysis	lysis protein	A0A2I6PIF7	Escherichia_phage	6.5e-71	97.9
WP_000191867.1\|200124_200652_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	3.3e-45	54.6
WP_000807823.1\|200947_201190_+	DUF2560 family protein	A0A0M4R322	Salmonella_phage	8.3e-36	98.8
WP_000542583.1\|201191_201371_+	hypothetical protein	Q9AZ02	Salmonella_phage	2.1e-23	93.2
WP_000190002.1\|201394_201817_+	hypothetical protein	Q716H4	Shigella_phage	3.6e-74	99.3
WP_000200777.1\|201813_203229_+\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	3.2e-276	99.2
WP_001535486.1\|203230_205429_+\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	97.3
WP_000372591.1\|205519_206413_+	hypothetical protein	A0A088CPT0	Enterobacteria_phage	2.6e-114	84.2
WP_000013269.1\|206431_207685_+	hypothetical protein	A0A088CQ56	Enterobacteria_phage	1.0e-233	98.3
WP_001362792.1\|207726_207915_+	hypothetical protein	A5VW71	Enterobacteria_phage	2.9e-28	100.0
WP_001140510.1\|207895_208357_+\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
WP_001122372.1\|208366_209785_+	Packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	3.9e-274	98.3
WP_000774929.1\|209788_210490_+	hypothetical protein	C6ZR14	Salmonella_phage	4.7e-71	92.3
WP_000627705.1\|210489_210945_+	DUF2824 family protein	I1TEJ3	Salmonella_phage	4.4e-86	98.7
WP_000964873.1\|210947_211640_+	DNA transfer protein	G5DA80	Enterobacteria_phage	2.7e-111	99.6
WP_000246943.1\|211649_212945_+	phage DNA ejection protein	Q716G3	Shigella_phage	2.1e-181	84.0
WP_001029850.1\|212944_214936_+	hypothetical protein	A0A1R3Y5Q1	Salmonella_virus	0.0e+00	96.6
WP_024143557.1\|215220_217077_+\|tail	tail protein	S4TVJ1	Salmonella_phage	2.3e-274	90.1
217346:217370	attR	NA	NA	NA	NA

DBSCAN-SWA_2

341565 : 348879

Dickeya_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201748.1\|341565_342684_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.9
WP_000125893.1\|342680_344627_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_000447499.1\|344756_344978_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|345301_345622_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|345652_347929_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|348142_348340_-	hypothetical protein	NA	NA	NA	NA
WP_001670446.1\|348501_348879_-	hypothetical protein	A0A077KET4	Ralstonia_phage	5.9e-20	42.7

DBSCAN-SWA_3

399229 : 539909

159

Salmonella_phage(50.98%)

protease,tRNA,integrase,portal,capsid,lysis,holin,terminase,tail

attL 497166:497225|attR 539032:539109

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154027.1\|399229_400033_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|400025_401348_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060024.1\|401328_402033_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572746.1\|402032_406499_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925875.1\|406843_408691_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|408950_409499_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|409526_410174_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|410235_411426_-	aspartate transaminase	NA	NA	NA	NA
WP_000977709.1\|411610_412702_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000117870.1\|413308_414709_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762343.1\|414909_415371_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544853.1\|415687_416902_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893197.1\|417147_418581_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191406.1\|418661_419864_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|420058_421351_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|421395_421644_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|421684_421924_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|421966_423124_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_000017133.1\|423086_425972_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001668146.1\|426098_426398_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|426419_426578_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_014344008.1\|426570_426831_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|426880_427291_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|427410_427650_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|427615_427990_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|428074_429058_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|429060_429810_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113629.1\|429820_430168_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000065108.1\|430164_430476_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_014343823.1\|430553_430844_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|431135_431369_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|431480_431702_+	hypothetical protein	NA	NA	NA	NA
WP_000929805.1\|431784_432387_+	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001096552.1\|432595_433207_+	hypothetical protein	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001617856.1\|433203_433350_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|433339_434137_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|434203_434521_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|434694_434820_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|434955_435405_-	hypothetical protein	NA	NA	NA	NA
WP_001141973.1\|435765_436452_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_001574216.1\|436727_437057_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|437040_437493_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|437510_437990_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|438197_438731_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|438687_440826_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|440822_441029_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009207.1\|441025_442573_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_010989008.1\|442496_444578_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|444668_444992_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|444984_445284_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|445264_445831_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|445827_446229_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|446240_446990_+\|tail	tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|447035_447434_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|447430_447760_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_010989010.1\|447839_450827_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_000978296.1\|450823_451156_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|451254_451752_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|451868_452402_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|452491_453187_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|453196_453934_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|453831_454536_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000033415.1\|454607_457958_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
WP_000178849.1\|457996_458239_+	hypothetical protein	NA	NA	NA	NA
WP_001144679.1\|458292_460731_+\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000143167.1\|460730_461312_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001526469.1\|461787_462756_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
WP_000334547.1\|463403_464030_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|464098_464398_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|464382_465069_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|465339_465531_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193770.1\|465957_468570_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
WP_000291723.1\|468777_469788_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001670452.1\|469953_470496_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224072.1\|470492_471602_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|471700_473809_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|473821_475729_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|475743_476997_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433416.1\|477001_478642_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|478638_479202_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|479457_479625_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|479724_480243_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156448.1\|480311_482072_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|482257_482710_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001670727.1\|482781_483834_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|484190_484700_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|484916_485522_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950876.1\|485508_487662_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|487680_488127_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420513.1\|488250_490305_+	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
WP_000424187.1\|490340_490799_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847732.1\|490893_491556_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|491729_492143_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|492187_492505_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140482.1\|492562_493774_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859429.1\|493988_494537_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548080.1\|494562_495342_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|495390_495672_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|495668_495998_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|496084_496744_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
497166:497225	attL	NA	NA	NA	NA
WP_000533596.1\|497331_498351_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
WP_000196402.1\|498351_498576_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000916251.1\|498788_498971_-	hypothetical protein	NA	NA	NA	NA
WP_000205292.1\|498973_499528_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
WP_000158391.1\|499524_501789_-	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-102	34.7
WP_001192832.1\|501818_502064_-	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_000387662.1\|502071_502395_-	hypothetical protein	NA	NA	NA	NA
WP_000467661.1\|503079_503544_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	2.7e-35	51.7
WP_001643782.1\|503940_504387_+	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
WP_001195066.1\|504409_504634_+	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_000063056.1\|504636_505617_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
WP_000074839.1\|505613_507002_+	DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
WP_000130738.1\|507039_507720_+	hypothetical protein	NA	NA	NA	NA
WP_000918617.1\|507723_507972_+	hypothetical protein	NA	NA	NA	NA
WP_001037052.1\|507964_508567_+	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
WP_000180135.1\|508563_508734_+	hypothetical protein	I6S1S6	Salmonella_phage	6.3e-06	87.5
WP_001129735.1\|508733_509072_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_000474096.1\|509255_509447_+	hypothetical protein	NA	NA	NA	NA
WP_000090037.1\|509515_510112_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
WP_000717784.1\|510108_510402_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
WP_000640103.1\|510398_510977_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
WP_000658037.1\|511369_511558_+	hypothetical protein	NA	NA	NA	NA
WP_001525456.1\|511760_512063_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000951228.1\|512040_512580_+	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
WP_086374239.1\|512897_513353_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-53	76.8
WP_001118126.1\|513853_514483_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.1
WP_001130808.1\|514485_516108_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
WP_000113503.1\|516107_517577_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.2
WP_137911068.1\|517461_518208_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	3.1e-97	91.2
WP_000873181.1\|518211_519444_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.7e-228	99.3
WP_000128057.1\|519448_519946_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000627463.1\|519957_520899_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	99.7
WP_001040693.1\|520940_521330_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	4.0e-32	62.0
WP_001125672.1\|521295_521703_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	96.3
WP_000008738.1\|521699_522254_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
WP_001121925.1\|522240_522630_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.1e-68	98.4
WP_001670724.1\|522604_523168_+	hypothetical protein	A0A0M4R331	Salmonella_phage	2.1e-82	78.7
WP_001135539.1\|523171_524317_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
WP_000535992.1\|524329_524773_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-55	74.5
WP_000389049.1\|524776_525229_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
WP_000990866.1\|525406_527416_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
WP_000353826.1\|527415_527991_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_000155111.1\|527990_528293_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_000081749.1\|528295_529363_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
WP_000819157.1\|529359_529692_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
WP_000931859.1\|529775_530231_-	hypothetical protein	NA	NA	NA	NA
WP_000301078.1\|530349_531102_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
WP_001270641.1\|531101_531455_+	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
WP_001197089.1\|531455_532655_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
WP_000049939.1\|532651_533332_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
WP_001670454.1\|533331_534864_+	hypothetical protein	S4TP62	Salmonella_phage	1.4e-128	66.2
WP_000421108.1\|534878_535397_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
WP_071786695.1\|535645_535831_+	hypothetical protein	NA	NA	NA	NA
WP_000370530.1\|535893_536502_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
WP_000033280.1\|536611_537004_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
WP_127913510.1\|537201_537447_-	hypothetical protein	NA	NA	NA	NA
WP_001670723.1\|537629_537827_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
WP_000503667.1\|537869_538517_-	hypothetical protein	NA	NA	NA	NA
WP_000938182.1\|539228_539909_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
539032:539109	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1439927 : 1450577

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157313.1\|1439927_1441358_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377036.1\|1441431_1442127_-	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
WP_000107431.1\|1442206_1442518_-	hypothetical protein	NA	NA	NA	NA
WP_001080660.1\|1443167_1444364_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_024131109.1\|1444621_1444810_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|1444820_1445033_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457658.1\|1445487_1446756_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000394197.1\|1446758_1447178_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_001529333.1\|1447304_1447466_-	hypothetical protein	NA	NA	NA	NA
WP_000598921.1\|1447946_1448744_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001670523.1\|1449115_1449406_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.0e-08	50.9
WP_001219019.1\|1450052_1450577_+	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7

DBSCAN-SWA_5

1545048 : 1554215

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000565902.1\|1545048_1546128_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000648783.1\|1546132_1546906_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018224.1\|1546921_1547896_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973714.1\|1547901_1548453_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000857530.1\|1548453_1549332_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_001023659.1\|1549379_1550279_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697840.1\|1550278_1551364_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981471.1\|1551740_1552634_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111837.1\|1552811_1554215_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_6

1622306 : 1631477

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|1622306_1624340_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|1624580_1625039_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|1625210_1625741_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|1625797_1626265_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|1626311_1627031_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|1627027_1628713_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240417.1\|1628935_1629667_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|1629726_1629834_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|1629814_1630546_-	ABC transporter permease	NA	NA	NA	NA
WP_000569168.1\|1630529_1631477_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

DBSCAN-SWA_7

2044977 : 2146447

107

Salmonella_phage(35.0%)

protease,tRNA,integrase,portal,transposase,capsid,lysis,holin,terminase,head,tail

attL 2071121:2071136|attR 2141536:2141551

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940030.1\|2044977_2045709_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553474.1\|2045827_2046631_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174939.1\|2046775_2047654_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	6.0e-15	24.7
WP_000985200.1\|2047835_2048879_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2048882_2049701_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2049711_2050725_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111025.1\|2050725_2051712_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2051702_2052341_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982964.1\|2052466_2053744_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2053738_2054878_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2055073_2056327_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883146.1\|2056651_2057842_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2058023_2059568_+	CadC family transcriptional regulator	NA	NA	NA	NA
WP_000100008.1\|2059928_2061260_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2061342_2063487_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2063542_2065003_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2065051_2065390_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2065466_2066804_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054239.1\|2066800_2067565_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2067566_2068997_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
WP_000970062.1\|2069646_2073534_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	8.0e-128	57.6
2071121:2071136	attL	NA	NA	NA	NA
WP_001667158.1\|2073558_2073789_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2073789_2075334_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134572.1\|2075384_2075936_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2075960_2076596_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2076599_2077961_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_001048530.1\|2077971_2078865_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995694.1\|2078980_2079829_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684023.1\|2079867_2080785_-	oxidoreductase	NA	NA	NA	NA
WP_001276364.1\|2080806_2082003_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022472.1\|2082118_2083045_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.8e-09	24.4
WP_001196291.1\|2083082_2083343_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
WP_000986042.1\|2083454_2083835_-	holo-ACP synthase	NA	NA	NA	NA
WP_000818972.1\|2083834_2084566_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399380.1\|2084577_2085306_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2085317_2086223_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2086219_2086900_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2087173_2088148_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2088164_2089964_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_010989047.1\|2090368_2091862_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_001542312.1\|2092346_2092484_+	hypothetical protein	NA	NA	NA	NA
WP_015589559.1\|2093196_2093361_-\|transposase	transposase	NA	NA	NA	NA
WP_015701342.1\|2093940_2094006_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_001738443.1\|2094068_2094281_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2094387_2094615_+	PagK-like protein	NA	NA	NA	NA
WP_000143154.1\|2094711_2095290_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2095279_2096104_-\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144691.1\|2096100_2098473_-\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000178853.1\|2098526_2098769_-	hypothetical protein	NA	NA	NA	NA
WP_000514917.1\|2098807_2102170_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000246126.1\|2102231_2102879_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2102776_2103514_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2103520_2104219_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2104228_2104558_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2104560_2107656_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|2107627_2107966_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2107962_2108358_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2108408_2109155_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2109162_2109564_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2109672_2110803_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2110851_2111430_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2111457_2111841_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2111851_2112211_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2112268_2113297_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2113351_2113699_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2113711_2115208_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2115197_2116778_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2116774_2116978_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2116961_2118893_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2118864_2119410_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2119696_2120098_+	hypothetical protein	NA	NA	NA	NA
WP_001533543.1\|2120333_2120786_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984581.1\|2120803_2121256_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|2121239_2121569_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|2121844_2122531_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|2122745_2122934_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2123440_2124004_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_001097241.1\|2124276_2124954_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2124950_2125091_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096562.1\|2125087_2125699_-	hypothetical protein	A0A0M4RU10	Salmonella_phage	1.8e-90	98.5
WP_000929791.1\|2125907_2126510_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_014343878.1\|2126544_2126793_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2126909_2127143_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000877757.1\|2127385_2128018_-	hypothetical protein	NA	NA	NA	NA
WP_000664368.1\|2128125_2128824_-	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
WP_000801764.1\|2128837_2129533_-	hypothetical protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
WP_000024044.1\|2129529_2130414_-	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
WP_010835408.1\|2130505_2130880_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_000643689.1\|2130839_2131082_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
WP_000660736.1\|2131181_2131577_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	1.9e-37	61.4
WP_001111772.1\|2131635_2132475_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
WP_000356948.1\|2132467_2132854_+	hypothetical protein	NA	NA	NA	NA
WP_000950426.1\|2132853_2133516_+	hypothetical protein	NA	NA	NA	NA
WP_000917562.1\|2133972_2134131_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2134152_2134503_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000017128.1\|2134629_2137557_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.2
WP_077248255.1\|2137519_2138677_+	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
WP_001237031.1\|2138719_2138959_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001670787.1\|2138999_2139284_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001007934.1\|2139261_2140491_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	4.9e-233	94.1
WP_000589050.1\|2140988_2141468_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2141464_2142421_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
2141536:2141551	attR	NA	NA	NA	NA
WP_001168374.1\|2142420_2143071_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2143102_2143678_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2143674_2143839_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989165.1\|2144102_2145725_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083342.1\|2145709_2146447_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_8

2151086 : 2209700

Salmonella_phage(56.25%)

tRNA,integrase,portal,capsid,holin,lysis,terminase,plate,head,tail

attL 2146906:2146922|attR 2200311:2200327

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2146906:2146922	attL	NA	NA	NA	NA
WP_000997365.1\|2151086_2152124_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|2152327_2152747_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000183641.1\|2152819_2153500_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082646.1\|2153553_2156214_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2156328_2157684_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264478.1\|2157728_2158052_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807818.1\|2158048_2159350_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
WP_000985653.1\|2159453_2159909_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235092.1\|2165983_2168557_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000992639.1\|2168686_2169418_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|2169414_2170395_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|2170526_2171264_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2171535_2171874_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|2171977_2172025_+	hypothetical protein	NA	NA	NA	NA
WP_000200080.1\|2172124_2173285_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000632386.1\|2173245_2174154_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225194.1\|2174211_2175333_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2175342_2176413_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212380.1\|2176852_2177371_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|2177363_2178584_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_039518707.1\|2178836_2179886_-\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	3.7e-189	90.8
WP_000382814.1\|2179907_2180471_-	WYL domain-containing protein	NA	NA	NA	NA
WP_039518706.1\|2180470_2181313_-	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	1.7e-112	70.4
WP_001278193.1\|2181426_2181780_+	hypothetical protein	Q6K1F9	Salmonella_virus	1.5e-57	99.1
WP_000883912.1\|2181830_2182340_+	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	9.5e-90	98.8
WP_000916538.1\|2182347_2182575_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.2e-36	97.3
WP_000085638.1\|2182561_2182762_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	3.0e-31	97.0
WP_001246239.1\|2182831_2183059_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	9.9e-31	97.3
WP_000752606.1\|2183058_2183280_+	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	7.1e-34	98.6
WP_000027690.1\|2183280_2183559_+	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	2.0e-41	87.0
WP_000238509.1\|2183562_2184393_+	hypothetical protein	A0A0M4RCP6	Salmonella_phage	7.1e-159	97.1
WP_000170594.1\|2184389_2186612_+	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	95.9
WP_000232650.1\|2186729_2186912_+	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
WP_001222154.1\|2186915_2187149_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
WP_001245655.1\|2187687_2187882_+	hypothetical protein	S4TRZ0	Salmonella_phage	2.0e-19	79.7
WP_000044288.1\|2188404_2189427_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.5e-198	99.7
WP_000795048.1\|2189423_2190170_-	hypothetical protein	Q6K1I9	Salmonella_virus	6.6e-140	96.8
WP_000156057.1\|2190166_2191939_-\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.8
WP_001085933.1\|2192104_2192959_+\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	3.6e-150	94.7
WP_001247243.1\|2193035_2194103_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
WP_000203472.1\|2194106_2194856_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	1.5e-128	98.4
WP_000207472.1\|2194949_2195456_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	2.9e-91	98.8
WP_000868400.1\|2195455_2195659_+\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_000134660.1\|2195662_2195959_+\|holin	holin	Q6K1I2	Salmonella_virus	5.8e-47	100.0
WP_001144116.1\|2195945_2196443_+	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000866101.1\|2196439_2196853_+\|lysis	LysB family phage lysis regulatory protein	A0A0M4R2N5	Salmonella_phage	1.2e-45	97.8
WP_001394645.1\|2196824_2196998_+	hypothetical protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
WP_001169074.1\|2196960_2197428_+\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
WP_001293102.1\|2197420_2197870_+	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	7.4e-70	94.6
WP_001094747.1\|2197938_2198580_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	5.5e-111	96.7
WP_000127176.1\|2198576_2198924_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	1.0e-55	96.5
WP_000246672.1\|2198930_2199839_+\|plate	baseplate assembly protein	Q6K1H4	Salmonella_virus	7.7e-159	98.3
WP_001285354.1\|2199831_2200362_+\|tail	phage tail protein I	Q6K1H3	Salmonella_virus	1.5e-101	97.2
2200311:2200327	attR	NA	NA	NA	NA
WP_000104703.1\|2200372_2202349_+\|tail	tail protein	S4TP62	Salmonella_phage	0.0e+00	99.4
WP_000122996.1\|2202361_2202910_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	9.9e-101	100.0
WP_001279028.1\|2203044_2204223_+\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	2.9e-222	99.5
WP_001207677.1\|2204238_2204757_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
WP_001029732.1\|2204819_2205155_+\|tail	phage tail assembly protein	A0A218M4J8	Erwinia_phage	2.6e-51	97.3
WP_085984508.1\|2205151_2205307_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_000069525.1\|2205299_2207741_+\|tail	phage tail tape measure protein	A0A218M4J5	Erwinia_phage	1.5e-297	85.5
WP_000978867.1\|2207754_2208240_+\|tail	phage tail protein	O80317	Escherichia_phage	1.7e-80	93.8
WP_000988227.1\|2208236_2209406_+	phage late control D family protein	Q6K1G4	Salmonella_virus	2.6e-207	95.9
WP_000972010.1\|2209481_2209700_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0

DBSCAN-SWA_9

2243379 : 2249192

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210079.1\|2243379_2243946_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.8e-55	62.2
WP_000984206.1\|2243962_2244208_-	transcriptional regulator	Q7M294	Enterobacteria_phage	4.8e-31	76.5
WP_000194694.1\|2244204_2244942_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.3
WP_000556587.1\|2245482_2245749_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_000980354.1\|2245745_2246303_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.7e-29	66.4
WP_001216598.1\|2246299_2246527_+	hypothetical protein	NA	NA	NA	NA
WP_000743153.1\|2246523_2246844_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783706.1\|2246858_2249192_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5

DBSCAN-SWA_10

3559308 : 3653406

107

Salmonella_phage(40.0%)

protease,tRNA,integrase,portal,capsid,lysis,plate,terminase,head,tail

attL 3592526:3592572|attR 3623505:3623551

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560969.1\|3559308_3559746_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001518251.1\|3559790_3560732_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001259011.1\|3560746_3561193_-	type II toxin-antitoxin system HigA family antitoxin	NA	NA	NA	NA
WP_000558166.1\|3561189_3561501_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_001127704.1\|3561586_3562516_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001159630.1\|3562733_3563045_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA
WP_000362050.1\|3563045_3563336_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000027730.1\|3563382_3564312_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829025.1\|3564308_3564944_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331364.1\|3564940_3565843_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_077248424.1\|3565855_3568906_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	4.6e-06	24.1
WP_001059744.1\|3569100_3569937_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000710967.1\|3570204_3571236_-	YiiG family protein	NA	NA	NA	NA
WP_000828039.1\|3571418_3572519_+	DUF3829 domain-containing protein	NA	NA	NA	NA
WP_000527677.1\|3572861_3573185_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_000683586.1\|3573184_3573844_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_001517951.1\|3573944_3574493_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000619474.1\|3574581_3574896_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_000009249.1\|3574892_3576041_-	lactaldehyde reductase	NA	NA	NA	NA
WP_001179685.1\|3576167_3576995_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000211454.1\|3577137_3578397_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000143957.1\|3578393_3579863_-	rhamnulokinase	NA	NA	NA	NA
WP_000217112.1\|3580150_3580987_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_000013290.1\|3581139_3581988_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063541.1\|3581984_3583019_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_000378721.1\|3583637_3584321_+	hypothetical protein	NA	NA	NA	NA
WP_000566800.1\|3584479_3585787_-	TRAP transporter large permease	NA	NA	NA	NA
WP_001091413.1\|3585779_3586295_-	TRAP transporter small permease	NA	NA	NA	NA
WP_000812816.1\|3586313_3587297_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000122632.1\|3587625_3588246_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9
WP_077906285.1\|3588252_3589005_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000133442.1\|3589016_3589412_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000338672.1\|3589532_3589736_+	hypothetical protein	NA	NA	NA	NA
WP_000580402.1\|3589783_3591157_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_001033731.1\|3591153_3591852_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001233463.1\|3592002_3592503_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
3592526:3592572	attL	NA	NA	NA	NA
WP_000985251.1\|3592687_3593668_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
WP_001099751.1\|3593737_3594031_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
WP_001583792.1\|3594167_3594440_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
WP_001670778.1\|3594609_3595110_+	hypothetical protein	M1SV55	Escherichia_phage	1.8e-85	91.0
WP_000557712.1\|3595173_3595398_+	DUF2732 family protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
WP_001113578.1\|3595699_3595924_+	hypothetical protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
WP_000027647.1\|3595920_3596196_+	DUF5405 family protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
WP_000257582.1\|3596185_3598462_+	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
WP_000037667.1\|3598640_3598838_+	hypothetical protein	NA	NA	NA	NA
WP_000680929.1\|3598834_3599875_-	Fic family protein	S4TP71	Salmonella_phage	6.3e-197	100.0
WP_000042036.1\|3600008_3600440_-	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
WP_000551923.1\|3600438_3600630_+	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
WP_000039235.1\|3601150_3602188_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
WP_000214048.1\|3602187_3603957_-\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	3.2e-286	81.0
WP_001074705.1\|3604121_3604985_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
WP_001224307.1\|3605016_3606177_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
WP_000224816.1\|3606180_3606939_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
WP_000177982.1\|3607036_3607537_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_001100637.1\|3607536_3607740_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000524754.1\|3607730_3607952_+	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_000534554.1\|3607935_3608445_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_000849743.1\|3608441_3608855_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	8.4e-36	59.9
WP_000277800.1\|3608962_3609430_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
WP_000997680.1\|3609422_3609890_+	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
WP_000273577.1\|3609894_3611271_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_001093789.1\|3611347_3611989_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
WP_000127150.1\|3611985_3612333_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_000246674.1\|3612339_3613248_+\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
WP_001000070.1\|3613240_3613771_+\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
WP_000104695.1\|3613781_3615524_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
WP_000874698.1\|3615523_3616093_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
WP_001279030.1\|3616227_3617415_+\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_001207676.1\|3617430_3617949_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
WP_001029727.1\|3618011_3618347_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_085984508.1\|3618343_3618499_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_000069524.1\|3618491_3620933_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
WP_000978869.1\|3620944_3621430_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
WP_000627818.1\|3621426_3622596_+	phage late control D family protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
WP_000468311.1\|3622673_3622892_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_000933379.1\|3622926_3623343_-	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
WP_001077320.1\|3623629_3624532_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
3623505:3623551	attR	NA	NA	NA	NA
WP_000591793.1\|3624716_3625679_+	6-phosphofructokinase	NA	NA	NA	NA
WP_000758711.1\|3625882_3626872_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000750762.1\|3626972_3627728_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000777320.1\|3627990_3629325_+	MFS transporter	NA	NA	NA	NA
WP_000646510.1\|3629335_3630295_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000557881.1\|3630304_3631345_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_001519915.1\|3631407_3632130_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000621104.1\|3632407_3632539_+	hypothetical protein	NA	NA	NA	NA
WP_001173080.1\|3632628_3632979_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000113085.1\|3632992_3634585_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_001283049.1\|3634671_3635631_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001167248.1\|3635886_3637422_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_000911133.1\|3637415_3638459_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000981826.1\|3638455_3639457_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000090737.1\|3639485_3640508_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774146.1\|3640536_3641412_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_001543603.1\|3641494_3641785_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001088053.1\|3641794_3642559_+	epimerase	NA	NA	NA	NA
WP_001216339.1\|3642650_3643418_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802242.1\|3643530_3644127_-	YiiQ family protein	NA	NA	NA	NA
WP_000155229.1\|3644227_3644656_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000796293.1\|3644761_3645508_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250617.1\|3645604_3646615_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136809.1\|3646726_3648235_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084285.1\|3648255_3649101_-	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000051370.1\|3649499_3649739_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872918.1\|3649960_3650446_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000139637.1\|3650538_3651468_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293360.1\|3651534_3652866_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000208240.1\|3652875_3653406_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_11

3772175 : 3790328

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001177098.1\|3772175_3772691_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7
WP_000368212.1\|3772700_3774182_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.6e-52	52.7
WP_000359503.1\|3774184_3774817_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000951728.1\|3774809_3775925_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
WP_001093501.1\|3775915_3776275_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000632052.1\|3776438_3777986_-	hypothetical protein	B9UDL6	Salmonella_phage	1.6e-50	30.4
WP_000703634.1\|3777985_3778915_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	6.7e-150	83.8
WP_000593184.1\|3778911_3779274_-	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000679396.1\|3779597_3780320_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
WP_000818152.1\|3780329_3781373_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
WP_001269716.1\|3781360_3781570_-	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271429.1\|3781569_3782523_-	chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262484.1\|3782522_3784877_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
WP_001185656.1\|3784973_3785102_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003640.1\|3785061_3785379_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907495.1\|3785430_3785955_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729849.1\|3785954_3787382_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
WP_000875314.1\|3787371_3787569_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|3787565_3788021_-	hypothetical protein	NA	NA	NA	NA
WP_000777266.1\|3788180_3788495_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|3788507_3789113_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|3789115_3789403_-	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|3789980_3790328_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3869

Enterobacteria_phage(50.0%)

integrase

attL 717:731|attR 7957:7971

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278818.1\|58_475_-	recombinase	NA	NA	NA	NA
WP_000688519.1\|467_1448_-	Plasmid segregation protein parM	A0A0A7NPX4	Enterobacteria_phage	7.7e-80	51.4
717:731	attL	NA	NA	NA	NA
WP_000048808.1\|1861_2170_-	hypothetical protein	NA	NA	NA	NA
WP_001144036.1\|2256_2901_-	ParA family protein	NA	NA	NA	NA
WP_000016498.1\|3080_3869_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.1e-55	95.6
7957:7971	attR	NA	NA	NA	NA

DBSCAN-SWA_2

9459 : 9993

Morganella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001221666.1\|9459_9993_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1

DBSCAN-SWA_3

18357 : 19206

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001057996.1\|18357_19206_-	3'-5' exonuclease	K7RFY5	Vibrio_phage	3.5e-28	40.1

DBSCAN-SWA_4

22705 : 22969

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001324596.1\|22705_22969_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	6.1e-08	54.0

DBSCAN-SWA_5

39856 : 43917

Pseudomonas_phage(50.0%)

integrase

attL 37059:37071|attR 41205:41217

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
37059:37071	attL	NA	NA	NA	NA
WP_001139957.1\|39856_41011_+\|integrase	integrase	B5WZU7	Pseudomonas_phage	1.3e-46	43.0
WP_001238939.1\|41161_41986_+	hypothetical protein	NA	NA	NA	NA
41205:41217	attR	NA	NA	NA	NA
WP_000976351.1\|42070_43273_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000977522.1\|43332_43917_+	histidine phosphatase family protein	A0A2L1IV13	Escherichia_phage	7.7e-11	39.8

DBSCAN-SWA_6

47031 : 51440

Wolbachia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000014583.1\|47031_47583_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.5e-19	33.9
WP_001141527.1\|47672_51440_+	DNA primase	A0A1B0VML8	Pseudomonas_phage	1.3e-18	29.4

DBSCAN-SWA_7

78566 : 86641

Sodalis_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000038332.1\|78566_79457_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.7e-65	44.8
WP_001247862.1\|79521_79788_-	hypothetical protein	NA	NA	NA	NA
WP_000218863.1\|79881_80316_-	hypothetical protein	NA	NA	NA	NA
WP_000117622.1\|81044_81545_-	antirestriction protein	G9FHQ1	Rhodococcus_virus	4.2e-05	27.3
WP_000978012.1\|82007_82604_-	hypothetical protein	A0A0N7KZV3	Escherichia_phage	3.1e-15	61.9
WP_001276261.1\|82600_83320_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845904.1\|83316_83751_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001145462.1\|83805_85764_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	2.8e-20	30.0
WP_000005985.1\|85822_86056_-	DUF905 family protein	NA	NA	NA	NA
WP_001276114.1\|86113_86641_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	9.3e-48	74.4

DBSCAN-SWA_8

90408 : 93478

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000086121.1\|90408_91092_-	DNA methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	36.4
WP_014640311.1\|91167_91479_-	hypothetical protein	NA	NA	NA	NA
WP_000273912.1\|91475_92378_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000618111.1\|92795_93044_+	DinI-like family protein	Q2A098	Sodalis_phage	1.1e-14	49.3
WP_000109072.1\|93040_93478_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010280

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection