CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017933	Cronobacter sakazakii ES15, complete sequence	18 crisprs	DEDDh,cas3,DinG,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e	6	32	4	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_1

196764-196888

Orphan

Consensus_repeat	Method
AAAGGTGGGTGCGCTGGCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_1

>merge|NC_017933|1|196764-196888|CRISPRCasFinder
AAAGGTGGGTGCGCTGGCGCTTACCCACCCTACTGAAGAAGATATACGCCTCAGTTTGTAGGGCGGCAAGCATAGCGCACCCGCCATAACGCAAAGGTAGGTGCGCTGGCGCTTACCCACCCTAC

>NC_017933|1|1|196764-196888|CRISPRCasFinder
AAAGGTGGGTGCGCTGGCGCTTACCCACCCTAC	TGAAGAAGATATACGCCTCAGTTTGTAGGGCGGCAAGCATAGCGCACCCGCCATAACGC
AAAGGTAGGTGCGCTGGCGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_004388299.1\|197039_198368_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_017933.1\|WP_014727853.1\|191019_192510_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_017933.1\|WP_014727858.1\|202146_202713_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_017933.1\|WP_014727855.1\|194599_196657_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NC_017933.1\|WP_007797331.1\|182721_183735_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	unknown	unknown	gnl\|CDD\|236898
NC_017933.1\|WP_007797247.1\|201550_201949_-\|YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|182212
NC_017933.1\|WP_014727857.1\|200747_201506_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NC_017933.1\|WP_004387638.1\|193761_194535_+\|cyclic-guanylate-specific-phosphodiesterase	unknown	unknown	gnl\|CDD\|183222
NC_017933.1\|WP_014727852.1\|187427_189353_+\|sensor-domain-containing-phosphodiesterase	unknown	unknown	gnl\|CDD\|184143
NC_017933.1\|WP_004387620.1\|180825_181728_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NC_017933.1\|WP_004387635.1\|189533_190820_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
NC_017933.1\|WP_014727860.1\|204976_205402_-\|nucleoside-triphosphatase-NudI	unknown	unknown	gnl\|CDD\|185369
NC_017933.1\|WP_014727859.1\|202984_204586_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376152
NC_017933.1\|WP_014727861.1\|205403_206111_-\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|238836
NC_017933.1\|WP_004388300.1\|198642_199677_-\|inner-membrane-protein-YhjD	unknown	unknown	gnl\|CDD\|188082
NC_017933.1\|WP_014727854.1\|192596_193529_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NC_017933.1\|WP_004387621.1\|181739_182735_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NC_017933.1\|WP_004387619.1\|179796_180816_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NC_017933.1\|WP_162140774.1\|202746_202911_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014727856.1\|199729_200629_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_004388299.1\|197039_198368_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02229e-180
NC_017933.1\|WP_014727853.1\|191019_192510_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.79184e-55
NC_017933.1\|WP_014727858.1\|202146_202713_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	8.88843e-27
NC_017933.1\|WP_014727855.1\|194599_196657_+\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NC_017933.1\|WP_007797331.1\|182721_183735_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0
NC_017933.1\|WP_007797247.1\|201550_201949_-\|YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|182212	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein.	1.29594e-74
NC_017933.1\|WP_014727857.1\|200747_201506_+\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.07492e-66
NC_017933.1\|WP_004387638.1\|193761_194535_+\|cyclic-guanylate-specific-phosphodiesterase	gnl\|CDD\|183222	PRK11596, PRK11596, cyclic-di-GMP phosphodiesterase; Provisional.	1.31965e-174
NC_017933.1\|WP_014727852.1\|187427_189353_+\|sensor-domain-containing-phosphodiesterase	gnl\|CDD\|184143	PRK13561, PRK13561, putative diguanylate cyclase; Provisional.	0
NC_017933.1\|WP_004387620.1\|180825_181728_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NC_017933.1\|WP_004387635.1\|189533_190820_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NC_017933.1\|WP_014727859.1\|202984_204586_+\|hypothetical-protein	gnl\|CDD\|376152	pfam18729, HEPN_STY4199, STY4199-like HEPN. STY4199-like HEPN nuclease domain.	2.59398e-180
NC_017933.1\|WP_014727861.1\|205403_206111_-\|deoxynucleoside-kinase	gnl\|CDD\|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	2.69744e-18
NC_017933.1\|WP_004388300.1\|198642_199677_-\|inner-membrane-protein-YhjD	gnl\|CDD\|188082	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD. This family, including YhjD in E. coli, is a conserved inner membrane protein homologous YihY, which in turn was incorrectly assigned to be ribonuclease BN. This, any suggestion this family is similar to ribonucleases should be removed. [Transcription, Degradation of RNA].	1.7623e-126
NC_017933.1\|WP_014727854.1\|192596_193529_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	2.17349e-99
NC_017933.1\|WP_004387621.1\|181739_182735_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NC_017933.1\|WP_004387619.1\|179796_180816_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NC_017933.1\|WP_014727860.1\|204976_205402_-\|nucleoside-triphosphatase-NudI	gnl\|CDD\|185369	PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional.	7.05946e-100
NC_017933.1\|WP_014727856.1\|199729_200629_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.90693e-104

>NC_017933.1|WP_014727855.1|194599_196657_+|AsmA-family-protein
MTKTTKIISVVAGVFLLLVVVAIIIIATFDWNRLKPTINQKVSTELNRPFAIRGDLGVVWERNKDEPGWRSWVPWPHVHAEDVVLGNPPDIPQVTMIHLPRVEATLAPLALLTKTVYLPWIKFQKPDAQLIRLSEKTNNWTFDMKQSEGEAAQQPSSWSFRLDNILFDQGRVRVDDNVSRADVEILIDPLGKPLPFNEVTGDKDKKGNDKVGDYVFGLKARGTYNDQPLRGSGKIGGMLALKSEGTPFPVQADLRSGDTRVAFVGTVNDPMNMGGVDLQLKFAGNSLGDLYELTGVLLPDTPPFETDGRLVAKINSDKGSVYDYRGFNGRIGESDIHGSLTYSQRKPRPKLEGDLESRQLRLADLGPLIGVDSGAGAEKSKNSEQKKGEKPAQPGDKVLPHDTFETNKWDVMDADVRFKGRRIEHSTRLPISDLTTHIVLNNGDLHLKPLKFGMAGGTIDANIHLDGDKQPMQGAAEIQARRLKLKELMPDVELMQRTLGELNGDAKLRGTGNSVASLLGTSNGNLKLLMNDGVISRNLMEILGLNVGNFIVGQIFGDDEVRVNCAAANLNLTNGVARPEIFAFDTENALINITGTTSFADERLDLTINPESKGVRIVTLRSPLYVRGTFKDPDYGVKPGPLIARGAVAAALATLVTPAAALLALISPSEGNENQCSAILGQMKK
>NC_017933.1|WP_004387638.1|193761_194535_+|cyclic-guanylate-specific-phosphodiesterase
MNLKQVTHRLALPSASVESLQERRYWLQCERTYTYQPIYRTDGRLLAVELLTIVTHPSDPSRRIAPDRYFAGLPVRYRVDVIEEQLQVLSSRAPFFTENNILASVNVDGPTLMAMRDMPKIRALTEALPWVRFELVEHISLPQDSTFASFCEFGPLWLDDFGTGMANFSALNEVRYDYIKVARDLFIMLRQSSEGRNLFTMLLQLMNHYCEGVIVEGVETLEEWQDVQQSPALAAQGYFLSRPVPFETLETVILRLS
>NC_017933.1|WP_014727854.1|192596_193529_-|sugar-kinase
MSEHKIAVIGECMIELSEKGAQMNRGFGGDTLNTAVYIARQVSPQALSVHYVTALGKDPFSQQMLDAWQAENVHTELTQRMDNRLPGLYYIETDERGERTFWYWRNEAAAKFWLESDEADAICAQLAHFDYLYLSGISLAILSPHSREKLLGLLKACRANGGKVIFDNNYRPRLWASREETQQVYRQMLECTDIAFLTLDDEDALWGEKPVDEVIARTQAAGVREVVIKRGAESCLVAVAGEALCEVPAVKLPKENVIDTTAAGDSFSAGYLAVRLTGGSAEAAAKRGHLTASTVIQYRGAIIPREAMPR
>NC_017933.1|WP_014727853.1|191019_192510_+|insulinase-family-protein
MQGTRIRLIAGGLLMAAASLVQAEPLQPDPAWQQGTLSNGFQWQILSTPQRPSDRIEIRLTVNTGSLAENTQQSGYTRFLPRLALTQSGSLQAVQARSLWQQSIDPKRPMPPVVVSYDYTLFNLSLPNNRNDLLKEALTYLSDTAGRVAITPESITKALQTQDMVATWPDTQDGWWRQRLKGSTLLGHDPSVDLKQPVDAKQLEAYYKKWYTPDAMTLIVVGNVDSRAVAEQINKAFGELKGKRETPAPVPTLSPLRREPVAIMTDSVRQDRLSIMWDNPWQPIRESSALQRYWRADLAREALFWHVQQNLSKNNIKDIGIGFDCRVLFQRAQCAINVESPNDKLDSNLALIARELANVRENGLSVDEFNALIAQKKLELQKLFATYARTDTDVLINQRMRSLQNQVVDIAPEQYQNLRQSFLNNLTAAELNQDLRQQLSQEMALILLQPKGEEEYSVKALQETWNRIMTPVAAAPAPDDARPDVTDIPPPADKSN
>NC_017933.1|WP_004387635.1|189533_190820_+|dicarboxylate/amino-acid:cation-symporter
MKRSLFKSLYFQVLTAIAIGILLGHFYPELGAQMKPLGDAFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLVIVNLVQPGAGMNVDPATLDAKAVAVYAEQAQQQGIVAFLMDVIPSSVIGAFASGNILQVLLFAVLFGFALHRLGRNGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQLGQLIVCFYITCILFVVVVLGSIARATGFNIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLVVLLLSSKGAAGVTGSGFIVLAATISAVGHLPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWVKELDEKQLNDTLNNKNSAAKTQQISS
>NC_017933.1|WP_014727852.1|187427_189353_+|sensor-domain-containing-phosphodiesterase
MAMVSAVSVFFLFIFSVVLLFHFVQSHRYHTAMQMESIARSVRQPLSAAILKANIPEAEAILREIKPAGVISRADVVLPNQFQALRMRFTPERPIPVTLARVFELPVQISLPLYSLERPANPQPLAYLVLQADSWRMYRFIINAISTLLTTFLLLALILSVAITWCINRLILHPLRDITRTLNALDAHELAHHQLTIPRLHKDDEIGMLVRTYNRNQQALAQQLDEARTSGTRFPLTGLPNQALLVALLEQAVASGGATALLYVACEPLRDVDESQREALQRARVEKLRSVLTPRMVLAQISQDDFAIIAHGVKTPEHAVTLTQQLLAALNEPPESDSGAPACAASIGVAMFDGRQSASTLYQSAISAALDARRNGFNQVAFFGESPVSAQESAMQNALARRQYAVWLQPQVDMRNGDIVGAEALLRERQPDGEWTLPVGLIDNIESSGLIVTVGDWVLDEACQLLARWQAHGITLPLSVNVSSLQLLKRDLVQTMLQRLERYAIAPGTLILEMTESQRIDDTEAAIAILRPLREAGVRIALDDFGMGYSSLSQLQKMKALPVDSLKIDKSFIDNLPDDDSVVAAIISMAKKLNLELVAEGIQNEAQRDWLLNAGVTVGQGYLFGKAATPAAFEDAWLTAP
>NC_017933.1|WP_007797331.1|182721_183735_+|dipeptide-ABC-transporter-ATP-binding-subunit-DppF
MSTHEATLQQPLLQAIDLKKHYPVKKGLFAPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKPDETAEKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTRLSKEARREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDLGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFSNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFSARCRRRFGPCTQIQPQLKEYNGQLVACFAVDQDETGEPRIP
>NC_017933.1|WP_004387621.1|181739_182735_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDEGTPFRAVDRVSYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDFPGRVMADKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALILITHDLALVAEAAHKIIVMYAGQVVETGEARDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPYATERCRVEEPALNLVDNGRQSKCHYPLDDAGRPTNYEHA
>NC_017933.1|WP_004387620.1|180825_181728_+|dipeptide-ABC-transporter-permease-DppC
MTQLTENKVVAAPVPMTPMQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFIAPHNPAEQFRDALLAPPVWQDGGSWAHILGTDDVGRDVMSRLMYGARLSLLVGCLVVVLSLVMGIVLGLVAGYFGGIVDTIIMRIVDIMLALPSLLLALVLVAIFGPSIVNASLALTFVALPHYVRLTRAAVLVEVSRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>NC_017933.1|WP_004387619.1|179796_180816_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>NC_017933.1|WP_004388299.1|197039_198368_-|MHS-family-MFS-transporter
MQATIATSIDNEHDAAPVNSRSKVVIASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKVTLVASLLTMGISTVLIGLLPGYESIGIMAPLLLALARFGQGLGLGGEWGGAALLATENAPAHKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVLIGLYVRVSLHETPVFAKIAKAKKQVKVPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTTPAAQGGLGFPRNDVLWMLMMAVIGFGLMVPVAGLLADRFGRRKSMIVITTLILLFALFVFPPLLGSGSEAMVMAYLLIGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIATWLQANYGLFYVGIYLAAMAALTLIALIATKETRHQSL
>NC_017933.1|WP_004388300.1|198642_199677_-|inner-membrane-protein-YhjD
MTTPEQPAKRPTEDLKYQPVPQLDTRPEEKNADDKPAEGVIGTVKQKVEKVERRPAVAHLLRAFERFNERMGNQFGAAITYFSFLSMIPVLMVSFAVAGFVLASHPTLLQDIFNKILQSVSDPTLAKTLSSSINAAVEQRTTVGIVGFAVALYSGVNWMGYLREAIRAQFRDDWERGAEDDKEKFWVKYLRDFISLIGLLVALVITMSITSVAGSAQETIIRLLHLDAIGWLKPVWHLIGLAVSFCANYLLFFWIFWRLPRHRPRRKALLRGTVIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFCSAWIATAQYKDDPQMPGKNPA
>NC_017933.1|WP_014727856.1|199729_200629_-|LysR-family-transcriptional-regulator
MDKIHAMRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTSLLHRTTRRVHLTQDGQVYYERARDLLANLDELDGLFLHDPASVSGRLRVDMPVAVAQNVVIPRLPEFLHHYPGIALELSSSDRLVDVVREGFDCVVRVGQLKDSGLVARPLGKLSQVNCASPDYLARFGTPETLDDLASHALVHYTPTLGTRPAGFEIGRESGSEWIPTGGVLTVNSTETYQAACFAGLGIIQVPRIGVREALRSGKLVEVLPQYRAAPMPVSLIYPHRRHLSRRVHLFMEWLATVMKGYVD
>NC_017933.1|WP_014727857.1|200747_201506_+|SDR-family-oxidoreductase
MTQRIAIITGGSRGLGKNAALKLAERGIGILLTYQRRRADAEAVVREIEQKGVKAAALALNVADSASFPAFVAQVKAQLQQTWQRDSFDYLINNAGIGIYAPFGEFSEAQFDDLVNIHFKGPFFLTQQLLPLINNGGRILNVSSGLTRFALPGYSAYASMKGAMEVLTRYQAKELGSRNIAVNIIAPGAIETDFGGGRVRDNEELNRFIASQTALGRVGLPDDIGAAIAAIIGDELGWMNAQRIEVSGGMFL
>NC_017933.1|WP_007797247.1|201550_201949_-|YdeI-family-stress-tolerance-OB-fold-protein
MKKTVIIATLSALLALPALAEEKGGFKNDEAPPPPHQLKEGYRGITDARSIDVKQAKEMHDGASVTLRGYLIKKKGDDVYQFRDKGGDIDVMIPHAVFQGKEVSPDELVGISGTLDKKQQPYRIRVTHFQKE
>NC_017933.1|WP_014727858.1|202146_202713_-|GNAT-family-N-acetyltransferase
MHPDTPFNDALLTFNSTRLDYRPLTPDDWPFFLSLQRDDTVMRFVADPRSDAQRMQDFASRLSPWTPASTRWLCLLISERHSGQPVGVTGFVMRGEGIAEVGFLLASAFQGQGYGYESLRAICRLAFEGCGLRRLVATVTGGNIASKKTLEKAGFLQEGTLRESYFIGGRWHDDWLFGLLARDSSPES
>NC_017933.1|WP_162140774.1|202746_202911_+|hypothetical-protein
MPEKRAAVIRAAIYLLIQAGKGDFSRKNRRVTFFPAIFSYVVSLPVSADKKIQK
>NC_017933.1|WP_014727859.1|202984_204586_+|hypothetical-protein
MARFTQPLVRETFETALTVIRQASVEILVLLGVNVAEGKDPQWFLQQLDQARLNLGNWATVARRLNLNDADMSQFTLQLRHLQQLVPQYESGQDVTENQLLAALRFVTCLEKVRNQQPKLGYSTEMNVDKTAMQPDALRQLRALDFTLRGMVREAWPDEQQRVNQLKQLCGGDKVRRWLKMGDKGDILSGMLFSELAMLVVDKKLFARHYDKLFQGATSLTLFVEPRKTLQTLLDDIREIRNVAALGKPLSGAQEVMLDNYFNAISAPLHKACGEGRTRVNPAALMKADDAQLKAFIDHAAKKNSVVGGDIFDVRDAIESPSRRQDGKKQETRQLVMGAVWGAVGLGAIAMVVGALFVASDALKPPAAEEVTAPVATAMAAEPENNDDSPRHKLSKMGITWDEENLRAAIDRDDKLVTRLFLEAGMNWKVAWTEQALAKNHEETLETLLRYRLQMDEKKPCRRMITTLSHALSQGEKMTSMRKEYLQTFCTVPAVVERQKHELEQAQLRAQANPNDETKKWVKIRETIYQTIR
>NC_017933.1|WP_014727860.1|204976_205402_-|nucleoside-triphosphatase-NudI
MRQRIIVCPVIQNNGEFLLCKMASDRGVFPGQWALPGGGMEPGETMETALKREIREELGDKLLITDVQPWAFRDDIRMKTYPDGTTEEIYMIYLIFDCISANRNITFNEEFQEIMWVSPEALKSMDLNEATRITFTQKGFI
>NC_017933.1|WP_014727861.1|205403_206111_-|deoxynucleoside-kinase
MRYNYLYMDPWSVDKVVANKKRKPIYICLTGNSGVGKSTLLKKLSSRLFSTDPDTIAIDEKSVHHSLLPYLFDDTNNYGYLIQLNFMIQRALIIKSWLDKGFNLIMERSHLEDYIFINFMLNAGYISKWQYDSYIKLWESINELLIEPDIIAFINYPIEHSLAHLKHDEINGIRPKEFPDEATKVKWITGWHTEYQSFTEKLPVHLRERVMACTHPDDIENFTTLVTNKAMTLRR

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Crispr_ID: NC_017933_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_2

697539-697616

Orphan

Consensus_repeat	Method
GAAACAGGAGAGGTAGGGCGGGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_2

>merge|NC_017933|2|697539-697616|CRISPRCasFinder
GAAACAGGAGAATCAGGGCGGGTAAGCGCAGCGCACCCGCCATTAGCGGCGTGAAACAGGAGAGGTAGGGCGGGTAAG

>NC_017933|2|2|697539-697616|CRISPRCasFinder
GAAACAGGAGAATCAGGGCGGGTAAG	CGCAGCGCACCCGCCATTAGCGGCGT
GAAACAGGAGAGGTAGGGCGGGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014728088.1\|691536_691851_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NC_017933.1\|WP_014728086.1\|687075_688968_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|130127
NC_017933.1\|WP_004385612.1\|685183_685606_+\|DUF1249-family-protein	unknown	unknown	gnl\|CDD\|182921
NC_017933.1\|WP_004385613.1\|685630_686458_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NC_017933.1\|WP_014728093.1\|702040_704299_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NC_017933.1\|WP_004385624.1\|699441_699732_-\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NC_017933.1\|WP_004385623.1\|698833_699427_-\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NC_017933.1\|WP_004385621.1\|695958_697371_+\|cell-division-protein-FtsP	unknown	unknown	gnl\|CDD\|182808
NC_017933.1\|WP_004385631.1\|705630_706194_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NC_017933.1\|WP_004385630.1\|705214_705631_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_017933.1\|WP_014728092.1\|701027_702044_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NC_017933.1\|WP_041460815.1\|697704_698841_-\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NC_017933.1\|WP_004385619.1\|692663_694934_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NC_017933.1\|WP_014728087.1\|689292_691473_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NC_017933.1\|WP_007895237.1\|695173_695911_+\|1-acylglycerol-3-phosphate-O-acyltransferase	unknown	unknown	gnl\|CDD\|184979
NC_017933.1\|WP_041460816.1\|700298_701012_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NC_017933.1\|WP_014728089.1\|691882_692464_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NC_017933.1\|WP_004385614.1\|686457_687033_+\|esterase-YqiA	unknown	unknown	gnl\|CDD\|182945
NC_017933.1\|WP_014728094.1\|704361_705054_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_017933.1\|WP_004385625.1\|699728_700283_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014728088.1\|691536_691851_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.13346e-20
NC_017933.1\|WP_014728086.1\|687075_688968_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|130127	TIGR01055, DNA_topoisomerase_4_subunit_B, DNA topoisomerase IV, B subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. This protein is active as an alpha(2)beta(2) heterotetramer. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017933.1\|WP_004385612.1\|685183_685606_+\|DUF1249-family-protein	gnl\|CDD\|182921	PRK11039, PRK11039, DUF1249 family protein.	1.92144e-109
NC_017933.1\|WP_004385613.1\|685630_686458_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	0
NC_017933.1\|WP_014728093.1\|702040_704299_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	1.26542e-129
NC_017933.1\|WP_004385624.1\|699441_699732_-\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	5.89966e-62
NC_017933.1\|WP_004385623.1\|698833_699427_-\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	9.93878e-124
NC_017933.1\|WP_004385621.1\|695958_697371_+\|cell-division-protein-FtsP	gnl\|CDD\|182808	PRK10883, PRK10883, FtsI repressor; Provisional.	0
NC_017933.1\|WP_004385631.1\|705630_706194_-\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	3.48903e-102
NC_017933.1\|WP_004385630.1\|705214_705631_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.44792e-74
NC_017933.1\|WP_014728092.1\|701027_702044_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	1.07944e-167
NC_017933.1\|WP_041460815.1\|697704_698841_-\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NC_017933.1\|WP_004385619.1\|692663_694934_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NC_017933.1\|WP_014728087.1\|689292_691473_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NC_017933.1\|WP_007895237.1\|695173_695911_+\|1-acylglycerol-3-phosphate-O-acyltransferase	gnl\|CDD\|184979	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional.	1.07005e-163
NC_017933.1\|WP_041460816.1\|700298_701012_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	2.59002e-140
NC_017933.1\|WP_014728089.1\|691882_692464_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	2.58605e-59
NC_017933.1\|WP_004385614.1\|686457_687033_+\|esterase-YqiA	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	3.9615e-145
NC_017933.1\|WP_014728094.1\|704361_705054_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.26657e-40
NC_017933.1\|WP_004385625.1\|699728_700283_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	2.55638e-11

>NC_017933.1|WP_004385621.1|695958_697371_+|cell-division-protein-FtsP
MSLSRRQFIQASGAALCAGAVPLRAHAAGQQQALPVPPLLESRRGQPLFLTLSRAHWSFVPGTRAQVWGFNGRYMGPTIRVWSGDDVKLIYSNRLQENVAMTVSGLQVPGPLMGGAPRMMSPGADWAPVLPVRQAAATLWYHANTPNRTGQQVYNGLAGMWLVEDAVSKALPVPNHYGVDDFPVIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQSPYVEVSRGWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVAVKQLALAPGERREVLIDMTNGDEVSITCGEAASIMDRIRGIFEPSSILISTLVLTLRPTGLLPLVTDTLPMRLLPDEIINGAPVRSRDITLSDDPGINGQLWDMKRTDVQTQQGAWERWTVRSDMPQAFHMEGVSFLIRSVNGAAPFPEDRGWKDTVWVDGQVELLVYFSQPSWEHFPFLYSSQTLEMADRGSVGQMVVNPAP
>NC_017933.1|WP_007895237.1|695173_695911_+|1-acylglycerol-3-phosphate-O-acyltransferase
MLSIVRIIIVVLYSIVVCILGSIWCLFSPRSPRHVATFGHMFGRLSRVFGLKVELRKPQGAENYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLVWIPFFGQLYWLTGNLLIDRNNRSKAHGTIAEVVNQFRKRDISIWMFPEGTRSRGRGLMPFKTGAFHAAIAAGVPIIPVCVSNTHGKIKLNRWNNGLVIVEMLPPVDTQGWGKEQVRELAAHCRQLMEEKIAQLDNEVAEREAAGKI
>NC_017933.1|WP_004385619.1|692663_694934_+|DNA-topoisomerase-IV-subunit-A
MSDLTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPVLMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQIQGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYKAGDGWLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGEPITGKLTLPPGAVVEHMLMTGEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSKGKGNKIISIPSADAAKGDDKLAYLTILPPQSTVTLHVGKRKIKLRPEELQKVHGERGRRGTLMRGLQRIDSVEVDSPSRPKADDSEA
>NC_017933.1|WP_014728089.1|691882_692464_-|NAD(P)H-dependent-oxidoreductase
MSNVLIINGAKQFAHSSGQLNDTLTEVAESYLRDVGHDVKVTRADSEYDVKEEVQKYLWADVIIYQMPGWWMGAPWTVKKYIDDVFTEGHGSLYASDGRTRSDASKKYGSGGLLQGKKYMLSLTWNAPLEAFTEKDQFFHGVGVDGVYLPFHKANEFIGLTALPTFIANDVIKMPDVPRYIAEYREHLAKIFA
>NC_017933.1|WP_014728088.1|691536_691851_-|antibiotic-biosynthesis-monooxygenase
MLTVIAEIRTRPGAHHRQAVLEEFKKIIPVVLAEAGCHGYTPMVDSATGLDFQTSAPDSIVMVEQWASAEHLKAHLETPHMLGFRDAVKGDVLDTTIRILESGV
>NC_017933.1|WP_014728087.1|689292_691473_+|catalase/peroxidase-HPI
MSTPSDQHNTLSAGKCPFHQGNSNQTAGGGTSSRDWWPNQLRVELLAQHSNRTNPLGDDFNYRKAFSELDYAALKADLKALLTDSQPWWPADWGSYTGLFIRMAWHSAGTYRSADGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPVKQKYGQKISWADLFILAGNVALENSGFRTFGFGAGREDVWEPDMDVNWGDEKNWLEHRHPESLAQAPLGATEMGLIYVNPEGPNHSGDPASAAPAIRATFGNMGMNDEETVALIAGGHTLGKTHGAAAASHVGVDPEAAPIEAQGLGWHSSFGSGVGADAITSGLEVTWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQYEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWYKLTHRDMGPKARYIGPEVPKEDLIWQDPLPAAIYQPTQADIDSLKAEIASAGLSVSELISVAWASASTFRGGDKRGGANGARLALAPQRDWDVNASAARALATLEAIQRTANKASLADIIVLAGVVGVEQAAKAAGVEITVPFAPGRVDARQDQTDVALFEFLKPKADGFRNYRGVRSSTPAESLLIDKAQQLTLTAPELTVLVGGMRALGANYDASAHGVFTDRVGVLSTDFFVNLLDMRYEWKATDATAEVFEGRDRESGEVKYTATRADLVFGSNAILRSFAEVYASQDAHEKFVKDFVAAWTKVMNLDRFDIQ
>NC_017933.1|WP_014728086.1|687075_688968_+|DNA-topoisomerase-IV-subunit-B
MTQSYNADAIEVLTGLEPVRRRPGMYTDTSRPNHLGQEVIDNSVDEALAGHARRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPDEKFFDSPRFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTEQGWCYQDGLNDYLSEAVNGLITLPEKPFIGNFSGETEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAELAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKGGHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISDDDDARTLAVMDMLLAKKRSEDRRNWLQEKGDMADIEV
>NC_017933.1|WP_004385614.1|686457_687033_+|esterase-YqiA
MSTLLYLHGFNSSPRSAKATSLQRWLAQQHPEINMVVPQLPPYPSDAAELLESLVLEHGGEPLGVVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDFLGANENPYTGQQYVLESRHIYDLKVMQIEPLEAPDLIWLLQQTGDEVLDYRQAVAYYAPCRQTVETGGNHAFAGFEDYFTQIVDFLSLR
>NC_017933.1|WP_004385613.1|685630_686458_+|3',5'-cyclic-AMP-phosphodiesterase
MESLLNLPVAGGASVRILQITDTHLFAGKNDTLLGVNTWESYQAVLAELHAEQRECDLIVATGDLAQDHTPEAYEHFATGIASLPAPCVWLPGNHDFQPAMYSTLQDAGISPAKRVFAGDNWQVLLLDSQVFGVPHGELSDYQLEWLERMLQAAPERHTLLLLHHHPLPSGCGWLDQHSLRNAQALDDVLNHYPQVKHLLCGHIHQELDLDWNGRRLMATPSTCVQFKPHCAGFTLDTVAPGWRWLNLHPDGSLTTEVCRLEGAQFRPDTASEGY
>NC_017933.1|WP_004385612.1|685183_685606_+|DUF1249-family-protein
MKRYTPDFPEMMRLCETNFAQLRRLLPRNDAPGEAVSYQVAGAQYRLTILESTRYTTLVQIEQTAPKVSYWSLPSMSVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAVPVC
>NC_017933.1|WP_041460815.1|697704_698841_-|radical-SAM-family-heme-chaperone-HemW
MADLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLRDLDNDAPWAQGREVKTIFIGGGTPSLLSGSAMQTLLDGVRARLTLAPDAEITMEANPGTVEADRFVEYQRAGVNRISIGVQSFSEPKLARLGRIHGPEEAKRAARLASGLGLRSFNLDLMHGLPDQSLEEALDDLREAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHRLLTAAGYAQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTLADGRILRTAKTRHPRGYMTGNYPDKQHEVEAQDKPFEFFMNRFRLLEPAPRAEFARYTGLSEAAIRTQIDEAIALNYLVETPESWQITEHGKLFLNSLLELFLAE
>NC_017933.1|WP_004385623.1|698833_699427_-|XTP/dITP-diphosphatase
MQKVVLATGNAGKVRELASLLQEFGLDIVAQTELGVDSAEETGLTFIENAILKARHAAQVTGFAAIADDSGLAVDALGGAPGIYSARYAGSDATDQENLEKLLEALKDVPDEQRQAQFHCVLVYMRHADDPTPLVFHGAWPGVITRAPAGQGGFGYDPIFFVPSLGKTAAELTREEKSAVSHRGQALKLLLEAMRNG
>NC_017933.1|WP_004385624.1|699441_699732_-|YggU-family-protein
MSAVSKTVDGLVLRLYIQPKASRDSIIGLHGDELKVAITAPPVDGQANAHLVKYLAKQFRVAKSQVVIEKGELGRHKQVKIIEPQQIPTEVAAVTD
>NC_017933.1|WP_004385625.1|699728_700283_-|YggT-family-protein
MLTLTFLVKTLIDLYVMVLLLRIWMQWSRCDFYNPLAQTVVKFTQPVIGPLRRIIPSIGPIDTSSLLVAFILSTLKFPLLLLIQSGALSLDPFNLVVGLLSLLKSAGQLVFWVIIIRSLMSWVSQGRSPIEFVLIQLTEPLMAPIRRILPAMGGIDFSAMGVIIVLYLLNYLAMDLFPGLWYLL
>NC_017933.1|WP_041460816.1|700298_701012_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSETERNLTQVRQKISAAAQRCGRASEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQEGVEKILHFRDAGVDGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEMTPLNVLIQVNISDEQSKSGIALSELDALAEQIAALPRLRLRGLMAIPAPEKEYARQLAVACEMAAAFKALKARYPTVDTLSLGMSDDMEATIAAGSTMVRIGTAIFGARDYARAAQQ
>NC_017933.1|WP_014728092.1|701027_702044_+|type-IV-pilus-twitching-motility-protein-PilT
MEMDELVALSVKHNVSDLHLCSELPARWRRQGRLETLQEPVPKPENLLARWLDDAHQRELAECGQTDFAVSLAGGVRLRGNAFRQMQGISLVLRLLPRGCPKLEALGVPAAVPGLLTMPDGLLLVTGATGSGKSTTLAAMVGHLNETLDGHILTLEDPVEFCHQPARCLIQQREIGTHCQSFSDGLRGALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDVFPADEQNKVRSQLAGSLKAVLAQKLVADAQGGRTALHELLINTPAVANLIREGKTHQLPGLMETGQQQGMQTFAQSVAMRLNEGRLALQKDASAGHWG
>NC_017933.1|WP_014728093.1|702040_704299_-|FAD-dependent-oxidoreductase
MNVFPRSADRTFPEEHLHADLLVAGGGLAGLCAALAAARDGLQVILVQDRPVLGGNASSEVRLWANGATSHMGNNNRWAREGGIMGEILEENLWRNKEGNPVMFDLVLLDLARSQPGLTLLLNTALFDVVNNGQRITRVRGFNAINETFYSITAAQFCDATGDGVLGYLAGAEFRVGAEEADELGEKMAPGDSFGHKLGHSIYFYTKQTSGPVRFVPPSFALKEITDIPRYQRLTSTLNGCDLWWLEWGGRLDTVHQSEEIKWELWKIVWGVWDYIKNSGQFPDAENLTIEWVGTIPGKRESRRFMGDHLLCQQDIIEQRDHYDAVAYGGWSIDLHPADGVYSTHDGCRQFHSKGTYTIPWRSLYSRSLDNLFLTGRLISASHVAFGSARVMCTCGLLGEVVGRAAALCHQQGITPRQLAARERITALQQHLQATGCYIPRQRLDDPARGARLRVSSEYQLTELTPNGEWATLSARTALLLPLRAGQSLPTLHFTLRAEAPQRLRVQLLTSHKPGNNTPERWLDECELEVHDAAPYRVALRHTAEQDCYVFIVFERCDAIEMALSAQHLPGIMMVFNSLNARVAKRSRQVADGDYGVDEFDFWLPRRRPHQIMPALRLDAPLRCYPPENLLNGRLRPEQQTNAWAPAADDPQPVVEWYWAQPQTFDTLTLIFDNDFDNAMETVQMGHDCAVTPHCVTHYRLWADETLLADVTDNHHAVCEYRVDAPRTVSVIRLEILNTAGALPALYALHVR
>NC_017933.1|WP_014728094.1|704361_705054_+|IclR-family-transcriptional-regulator
MSSQPNQSLIDGIRCLQYLVSSDRAIGCRELARLMGINTTRVNRLLMTMASIGLTMQDEQRRYLPGPGIHALAAQAIRGSALFSHALPLLERYAPKDVVVALGVLWEDQIIYIYHSTPGSQMSQALAGFRMLPAWQSVIGMSLLAAESDETLEARFTPEQWLQLAPHVAQQREQGLVVWRHDDGEVSMAKPLGIHNAAVALAGMWNLTNPEIHTCLEQLDALAARLMKPV
>NC_017933.1|WP_004385630.1|705214_705631_-|Holliday-junction-resolvase-RuvX
MSGTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGLPLNMDGTEQPLTARARTFANRLHGRFGIKVTLHDERLSTVEARAGIFERGGFRALNKGSVDSASAVVILESYFEQHG
>NC_017933.1|WP_004385631.1|705630_706194_-|YqgE/AlgH-family-protein
MNLQHHFLIAMPALQDPLFRRSVVYICEYNNEGAMGLIINKPLENLQVEGVLQKLKITPEPRDPAIRLDKPVFLGGPLAEDRGFILHTPPDAFSSSIRISDNTVITTSRDVLETLGTAEQPDDVLVALGYSSWEKGQLEEEILENAWLTAPADLNILFRTPIADRWREAAKLIGIDIHTMPGEAGHA

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Crispr_ID: NC_017933_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_3

742152-742254

Orphan

Consensus_repeat	Method
GTAGGGTGGGTAAGCGCAGCGCACCCACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_3

>merge|NC_017933|3|742152-742254|CRISPRCasFinder
GTAGGGTGGGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACGGCGGCAAATCTGGCCGGTTTTCAGCATCGTAGGGTGGGTAAGCGTAGCGCACCCACCG

>NC_017933|3|3|742152-742254|CRISPRCasFinder
GTAGGGTGGGTAAGCGCAGCGCACCCACCG	TATCGTCAAACCACGGCGGCAAATCTGGCCGGTTTTCAGCATC
GTAGGGTGGGTAAGCGTAGCGCACCCACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_004385678.1\|749499_750219_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NC_017933.1\|WP_007777939.1\|745255_745909_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NC_017933.1\|WP_014728112.1\|744798_745113_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NC_017933.1\|WP_041460818.1\|748580_749477_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NC_017933.1\|WP_004385660.1\|731941_732520_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NC_017933.1\|WP_041460817.1\|743893_744622_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_017933.1\|WP_007870703.1\|746013_747003_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NC_017933.1\|WP_004385658.1\|731450_731780_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NC_017933.1\|WP_004385676.1\|747957_748479_-\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NC_017933.1\|WP_014728108.1\|738309_741183_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_017933.1\|WP_014728109.1\|741350_742094_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NC_017933.1\|WP_014728113.1\|747527_747944_+\|protein-YgfX	unknown	unknown	gnl\|CDD\|369290
NC_017933.1\|WP_004385667.1\|737791_738181_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_017933.1\|WP_014728103.1\|732543_733860_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_017933.1\|WP_014728110.1\|742308_743742_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NC_017933.1\|WP_014728105.1\|735045_736248_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NC_017933.1\|WP_014728104.1\|733856_735035_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_017933.1\|WP_014728107.1\|736670_737768_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_017933.1\|WP_007870701.1\|747280_747547_+\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NC_017933.1\|WP_014728102.1\|730612_731209_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_004385678.1\|749499_750219_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	5.56604e-171
NC_017933.1\|WP_007777939.1\|745255_745909_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	1.00783e-132
NC_017933.1\|WP_014728112.1\|744798_745113_+\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	5.23567e-60
NC_017933.1\|WP_041460818.1\|748580_749477_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	0
NC_017933.1\|WP_004385660.1\|731941_732520_+\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	2.11265e-121
NC_017933.1\|WP_041460817.1\|743893_744622_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	8.90343e-59
NC_017933.1\|WP_007870703.1\|746013_747003_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NC_017933.1\|WP_004385658.1\|731450_731780_-\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	1.47359e-64
NC_017933.1\|WP_004385676.1\|747957_748479_-\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	1.37655e-128
NC_017933.1\|WP_014728108.1\|738309_741183_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_017933.1\|WP_014728109.1\|741350_742094_+\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	4.66022e-167
NC_017933.1\|WP_014728113.1\|747527_747944_+\|protein-YgfX	gnl\|CDD\|369290	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system. CptA is a family of bacterial proteins named for the member of this family, YGFX_ECOLI. YgfX was previously thought to be the toxic part of a toxin-antitoxin module along with the antitoxin, pfam03937 Sdh5. However, studies have shown that, YgfX interferes with correct cell division and morphology. Furthermore, the function of YgfX-SdhE as a TA system could not be demonstrated in either E. coli or Serratia sp. ATCC 39006. YgfX is predicted to have a short N-terminal cytoplasmic domain followed by two transmembrane helices (TMHs) separated by a short periplasmic loop and finally, a larger C-terminal cytoplasmic domain. The TMHs of YgfX are required for activity, but the sequence of the cytoplasmic 13 N-terminal amino acids is not essential. Furthermore, the amino acids W34 and D117 are not required for localization but are necessary for YgfX multimerization, interaction with SdhE, and YgfX activity. It is proposed that the formation of YgfX multimeric membrane-bound proteins are required to enable the interaction with the cytoplasmic SDH assembly factor SdhE. Another study has demonstrated that sdhEygfX (bicistronic operon) affects pig biosynthesis, directly or indirectly, at the level of transcription of the biosynthetic operon (pigA-O). It has also been suggested that, in addition to indirect transcriptional activation of pigA-O, YgfX might facilitate the formation of a terminal pig biosynthetic complex consisting of PigB and PigC.	4.20454e-59
NC_017933.1\|WP_004385667.1\|737791_738181_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.30505e-73
NC_017933.1\|WP_014728103.1\|732543_733860_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_017933.1\|WP_014728110.1\|742308_743742_-\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NC_017933.1\|WP_014728105.1\|735045_736248_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_017933.1\|WP_014728104.1\|733856_735035_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NC_017933.1\|WP_014728107.1\|736670_737768_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_017933.1\|WP_007870701.1\|747280_747547_+\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	9.33109e-49
NC_017933.1\|WP_014728102.1\|730612_731209_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	6.62927e-109

>NC_017933.1|WP_014728109.1|741350_742094_+|SDR-family-oxidoreductase
MSVALITGASRGIGRATALLLGAQGYTVAVNYLHNAAAAQEVVERIVASGGRAFAIQADISDEPQVMAMFRTLDEQDEPLGALVNNAGVLFTQCMTENLTAERINRVLATNVTGYFLCCREAVKRMAHHHGGQGGAIVNVSSAASRLGAPGEYVDYAASKGAVDSLTIGLSLEVAAQGIRVNGVRPGLIYTDIHASGGEPGRVDRVKSALPMQRGGQPEEVAEAIAWLLSDKASYVTGSFLDLAGGK
>NC_017933.1|WP_014728108.1|738309_741183_+|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSHLENRDAFIERHIGPGVDQQQEMLRTVGADSLDALISQIVPADIQLATPPDVGDAATEFAALAELKTIAGRNKRFKNYIGMGYTAVHTPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFEVIVDDAPKALDHQDLFGVLLQQVGTTGEVHDYRELISELKSRKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAASDEFKRSMPGRIIGVSKDAAGRTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIASRIHRFADILAAGLQQKGLKLRHATWFDTLCVEVADKATVLARAEASEINLRSDIPGAVGITLDETTTRADVQALLCVVTGEDATFDIDALDKEVAHDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPADQAEGYLQMISQLSDWLVKLTGYDALCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKQGNIDLADLRAKAETAGDKLSCIMVTYPSTHGVYEETIREVCDIVHQYGGQVYLDGANMNAQVGITSPGYIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTSQGAVSAAPFGSASILPISWMYIRMMGSQGLKKASQTAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEATGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRGEIDSVAQGEWPQDDNPLVNAPHVQRELAQEWEHAYSRELAAFPAGFENKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NC_017933.1|WP_004385667.1|737791_738181_+|glycine-cleavage-system-protein-GcvH
MSNVPNELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPDVGTTVNAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYGQGWIFKIKASDEAEVAALLDASAYEALLEDE
>NC_017933.1|WP_014728107.1|736670_737768_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHNLCGARMVDFHGWMMPLHYGSQIDEHHAVRNDAGMFDVSHMTIVDLRGTRTRDFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFMTEDYFRLVVNSATREKDLAWINEHAEPYGVSVTVRDDLSLIAVQGPNAKAKAATLFTDAQRKATEGMKPFFGVQADDLFIATTGYTGEAGYEIAMPNEKAAGFWSQLVEAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWQPEDRAFIGRDALEAQRENGTEQLVGLVMTEKGVLRGELPVRFTDADGNAREGIITSGTFSPTLGYSIALARVPAGIGDTAIVQIRNREMPVKVTKPIFVRAGKPVTQ
>NC_017933.1|WP_014728105.1|735045_736248_+|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLEGSGLRVAVLEQRAPEPLEASAPPALRVSAINAASEALLKKLDVWDAILRQRAAAYHGMEVWEKDSFGRIAFDDASFGFSHLGHIIENQAIHYALWQKAQQCKSVTLMAPATLQQVAWGENEAFLTLEDGNMLTARLVIGADGANSWLRTKAEIPLTSWDYQHHALVATIRTDEPHGGVARQVFHGDGILAFLPLSDPHLCSIVWSLSPQEADRMQQAPVSAFNQALCVAFDNRLGLCTLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELISELRRLHQQGKDIGQHLYLRRYERSRKHAAAMMLAGMQGFRELFSGANPAKKLLRDLGLTLADKLPGVKPQLIRQAMGLNDLPEWLR
>NC_017933.1|WP_014728104.1|733856_735035_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVIIAGGGMAGATLALALSRFTHGALPVHLVEASAPESAAHPGFDARAIALADGTCRELARVGVWQALAPCATPITTVHVSDRGHAGFVTLNARDYQTQALGNVVELHDAGQRLFSLLRKAPGVHLHCPARVTAITRRDETVSVQLDNGETLEGQLLVAADGSRSSIGAQCGIEWRQQPYHQAAIIANVATALPHQGRAFERFTEHGPLALLPMSGGRSSLVWCHPLDKQAEVLGWSDERFCRELQTAFGWRLGRITHAGARSGYPLALSLASRVISHRTALVGNAAQTLHPIAGQGFNLGLRDVMTLAETLAQAFARGEDIGAYPVLGAYQQRREQDKAATIGVTDGLVQLFANRWSPLVVGRNLGLMAMDLFTPARDALARRTLGWVPR
>NC_017933.1|WP_014728103.1|732543_733860_+|Xaa-Pro-aminopeptidase
MTQQEFLRRRQALLAKMAPASAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDETHSHSVIFNRLRDKTAEIWFGRRLGQEAAPAKLGVDRALAFNEIDEQLYQLLNGLDVVYHAQGEYAYADTIVFTALDKLRRGARQNLSAPATLTDWRPWVHEMRLFKSPEELAVMRRAGEISALAHTRAMQKCRPGMYEYQLEGEILHEFTRHGARFPSYNTIVGGGENGCILHYTENESQLRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRAVYDIVLESLETALRLFRPGTSIQDVTGDVVRVMVKGLIGLGILKGDVEQLVAENAHRPYFMHGLSHWLGLDVHDVGFYGPDRSRILAPGMVITVEPGLYIAPDADVPEEYRGIGIRIEDDIVITETGNENLTASVVKSADDIEALMAAARRS
>NC_017933.1|WP_004385660.1|731941_732520_+|YecA-family-protein
MSIQNEMPGYDEVGQLLNQQGVGLTPAEMHGLISGILCGGNHDSSWQPLLHDLTNEGLAFGQQLAQALRQLHAATSDTLEDDGFLFQLWLPDGDDVSVFDRADALAGWVNHFLLGLGVTQPKLDKITGETGEAIDDLRNIAQLGYDEGEDQEELEMSLEEIIEYVRVAALLCHDTFTRQSPTAPEVKKPTLH
>NC_017933.1|WP_004385658.1|731450_731780_-|cell-division-protein-ZapA
MSAQPVDIQIFGRSLRVNCPPEQRDALNQAADELNQRLQDLKVRTRVTNTEQLVFIAALNICYELAQEKVKTRDYAANMEQRIRMLQQTIEQALLEQGRISERAEPKFE
>NC_017933.1|WP_014728102.1|730612_731209_-|5-formyltetrahydrofolate-cyclo-ligase
MTELPVTSDLRQHIRKEIRQKRRALTAHQQAHFAEQAAARMLGFAPVVEAKSVAVFLSFDGELDTRPLIEGLWRAGKQVYLPVLHPFSPGNLLFLRYLPDSLLATNRLKILEPALDVRHVLPLDRLDVLITPLVAFDRTGQRLGMGGGFYDRTLQNWRAHGFLPVGYAHDCQQVESLPVQEWDIPLPVVVTPTKIWRW
>NC_017933.1|WP_014728110.1|742308_743742_-|6-phospho-beta-glucosidase
MKQLKLPKDFLWGGAVAAHQVEGGWDQGGKGPSICDVLTGGAHGVPREITQEVEPGKYYPNHEAIDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPNGDETQPNEAGLQFYDDMFDELLKYNIEPVITLSHFEMPLHLVKQYGGWTNRKVVDFFVRFAEVVFERYKNKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDTPEETMYQVLHHQFVASAMAVKIGHRINPEMQIGCMLAMVPLYPFSCKPEDVMYAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEEGDEQVLREGCCDYLGFSYYMTNAVKADGGSGDALSGFQGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDNVEADGSINDDYRIDYLRAHIEQMMKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFAWYKAVIASNGETL
>NC_017933.1|WP_041460817.1|743893_744622_-|MurR/RpiR-family-transcriptional-regulator
MFTHSAVASLNNLEMMVYNFVVKNRDKVMYMTIRELADAAGVSTTTVLRFCRKMNCDGYSEFRVRFKLYLEQNEPQQANFGASEIISFFRSVNNDEFDALLDRATDIILQSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTSDMAKNALAIVLSVSGETEEILRFASQFSLHNCKVLSVTSHDNSSLAKLADFNLSWHIPQTRIAGVYDITTQIPVIYILETLGRKLAKKLA
>NC_017933.1|WP_014728112.1|744798_745113_+|ASCH-domain-containing-protein
MKNDITFYTRFQQDILAGTKTITIRDESEAHFTPGQRLRTGRYEDNGYFCTLEVLSVTPVTLTQLDEEHARQENMTLAELKKVIADIYPGINELYVIAFKKVEG
>NC_017933.1|WP_007777939.1|745255_745909_+|hemolysin-III-family-protein
MVRKPLLAQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDSNASATAITSYSLYGGSMILLFLASTLYHAIPHARAKTWLKKFDHCAIYLLIAGTYTPFLLVGLKSSLAHGLMIVIWSLALLGILFKLTIAHRFKVLSLVTYLTMGWLSLVVIYQMVMKLAPGSVTLLAAGGIIYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIR
>NC_017933.1|WP_007870703.1|746013_747003_-|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPAASARLPLTLISLEDWALATITGPDSEKYLQGQVTADVTELGENQHLLVAHCDAKGKMWSNLRLFRHGDGFAWIERRSVRDTQLAEMKKYAVFSKVTIAPNDDAVLLGVAGFQARAALANHFATLPDEQNPRVVDGATTLLWFGLPAERFMVITDAETASQLSDKLHGEAQLNASAQWLALDIEAGFPVIDAPNSNQFIPQATNIQALGGISFKKGCYAGQEMVARAKFRGANKRALWYLAGHGSRVPQPGEDIEMQMGENWRRTGTVLAAVQLDDGRLLAQVVMNNDLETGTLFRVREESGAHTLHIEPLPYSLEEA
>NC_017933.1|WP_007870701.1|747280_747547_+|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYDYDSLSDEDKRVFVRLLECDDPDLFNWLMNHGKPADAELARMVELIQQRNQARGPVAL
>NC_017933.1|WP_014728113.1|747527_747944_+|protein-YgfX
MVLWHSDLRVSWRSQWLSLLLHGAVAVIILLLPWPLRYLPVWMLLLSMVVFDCVRSQRRINAFQGEVSLTADYQLRWQGVDWQICATPWMLRSGMMLRLRHPKTTRRHHVWLAADSMTEAEWRDLRRLLLQQPVGDKR
>NC_017933.1|WP_004385676.1|747957_748479_-|flavodoxin-FldB
MNIGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPTLMEQYDVLILGIPTWDFGELQEDWEAIWEQLDALNLDGKIVALYGMGDQLGYGEWFLDALGMLHDKLSPKGVKFVGYWPTEGYEFTSAKPVIADGELFVGLALDETNQYDLSDARIESWCEQILGEMAAHFS
>NC_017933.1|WP_041460818.1|748580_749477_+|site-specific-tyrosine-recombinase-XerD
MEQDLARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATAQSGDLQTLLAERVEGGYKATSTARLLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTVEEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>NC_017933.1|WP_004385678.1|749499_750219_+|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKKTIALLSVTLAAFSGFAQADDAAIKQSLTKLGVANAEIQPSPLAGMKTVLTESGVIYVTEDGKHIIQGPLYDVSGGQPVNVTNQMLMTKLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEEMKDYNALGITVRYLAFPRQGPRSETAKDMQAIWCAKDRNKAFDNAMSGGKVEAASCDVDTAKHYELGVQFGVQGTPAIVLSNGAMVPGYQGPKEMKAFLDEHQKQLQASGK

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Crispr_ID: NC_017933_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_4

842272-842428

Orphan

Consensus_repeat	Method
GTAGGGCGGGTAAGCGCAGCGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017933_4

>merge|NC_017933|4|842272-842428|CRISPRCasFinder
GTAGGGCGGGTGCGCTGCGCTTACCCACCCTACGAGAATTCCAGGGCGTTTGTCTTGTAGGGCGGGTAAGCGCAGCGCACCCGCAGCAGAACTTCGCTTACCCACCCTACATACATTTAAAGATGTCCTGTGAGTAGGGCGGGTAAGCACAGCGCAC

>NC_017933|4|4|842272-842428|CRISPRCasFinder
GTAGGGCGGGTGCGCTGCGCTTAC	CCACCCTACGAGAATTCCAGGGCGTTTGTCTT
GTAGGGCGGGTAAGCGCAGCGCAC	CCGCAGCAGAACTTCGCTTACCCACCCTACATACATTTAAAGATGTCCTGTGA
GTAGGGCGGGTAAGCACAGCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014728164.1\|848812_850228_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NC_017933.1\|WP_004387911.1\|842479_842842_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_017933.1\|WP_014728157.1\|838092_839646_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NC_017933.1\|WP_004386865.1\|829240_831475_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_017933.1\|WP_004387921.1\|853237_853561_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_017933.1\|WP_007777742.1\|851155_852583_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_017933.1\|WP_004387918.1\|850237_851146_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_017933.1\|WP_014728155.1\|835661_836771_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187547
NC_017933.1\|WP_004386873.1\|841496_842168_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_017933.1\|WP_004386866.1\|832592_834230_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_017933.1\|WP_004386867.1\|834312_835611_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_017933.1\|WP_014728154.1\|831575_832367_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_017933.1\|WP_007870417.1\|852582_853188_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_017933.1\|WP_014728163.1\|847581_848568_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_017933.1\|WP_004387915.1\|846818_847553_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_017933.1\|WP_014728156.1\|837093_837921_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_017933.1\|WP_014728162.1\|844948_846661_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_017933.1\|WP_014728159.1\|840329_841298_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NC_017933.1\|WP_014728161.1\|843146_844949_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_017933.1\|WP_014728158.1\|839654_840344_+\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014728164.1\|848812_850228_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NC_017933.1\|WP_004387911.1\|842479_842842_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.59877e-56
NC_017933.1\|WP_014728157.1\|838092_839646_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NC_017933.1\|WP_004386865.1\|829240_831475_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_017933.1\|WP_004387921.1\|853237_853561_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.62248e-47
NC_017933.1\|WP_007777742.1\|851155_852583_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_017933.1\|WP_004387918.1\|850237_851146_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_017933.1\|WP_014728155.1\|835661_836771_-\|SDR-family-oxidoreductase	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.7317e-62
NC_017933.1\|WP_004386873.1\|841496_842168_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.36696e-153
NC_017933.1\|WP_004386866.1\|832592_834230_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_017933.1\|WP_004386867.1\|834312_835611_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_017933.1\|WP_014728154.1\|831575_832367_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.15408e-158
NC_017933.1\|WP_007870417.1\|852582_853188_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	2.03886e-151
NC_017933.1\|WP_014728163.1\|847581_848568_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_017933.1\|WP_004387915.1\|846818_847553_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.31774e-138
NC_017933.1\|WP_014728156.1\|837093_837921_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.02021e-66
NC_017933.1\|WP_014728162.1\|844948_846661_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_017933.1\|WP_014728159.1\|840329_841298_-\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.74789e-45
NC_017933.1\|WP_014728161.1\|843146_844949_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_017933.1\|WP_014728158.1\|839654_840344_+\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	8.49226e-129

>NC_017933.1|WP_004386873.1|841496_842168_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWETLADREVSLFSIIAKTKESDKWGAASPEDLLAAIERQAYTARHVVITGGEPCIHDLLPLTELLEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRMRDIEALDELLARLHDERQRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_017933.1|WP_014728159.1|840329_841298_-|TPM-domain-containing-protein
MVRILTSFILTIALTLVSVSALAQPFDVPPMRGVINDPADLLSGQEYVALLDDVSAINTRTHAQTAILVLPELKGDNLERFATRTFNTWRLGNAQRNDGVLILVAWHDRLVRIETGRGLQKTIPDALASRVIKEQMLPWFRAGDLTAGLRHGLTGIDALLSHQPLPPATSPSWIQAWLKPLLLNFSYWLTLPVLAIVLFALIMLRKKKTLVTLFFGTSCLLTPALAITSNFFPWVEPFLWLSFSVPFLLMILALLVVFAFPNYRLSATGNGSSSGDTSAAWLATSHLHSSSGGDSASHHSSHHSVSSGDGGSSDGGGSSDNW
>NC_017933.1|WP_014728158.1|839654_840344_+|N-acetylmannosamine-6-phosphate-2-epimerase
MLEQIKGKLVVSCQALENEPLHSPFIMGRMALAAAQGGAAGIRANSVADIIAIKEQVALPVIGIIKRDYPASDVFITATMREVSELMEAAPEMIALDATARPRPGGETLEQFVGQIRHTWPDVLLMADVSNVEEAVTAEALGFDCVGTTLYGYTANTQGHRLPEDDFAQLKAVLAAVTVPVIAEGNVNTPEGAARCLALGAHAVVVGGAITRPQQITRRFADALRSPVV
>NC_017933.1|WP_014728157.1|838092_839646_+|PTS-transporter-subunit-EIIC
MAFFSGTSSGRWFEKAQRFGKSFMLPIAVLPAAGLLLGVGGALSNPNTLTAYPFLDVGWLQAIFTIMSSAGAIVFANLSVLFAVGVAVGLARTDKGTAGLAALLAFLVMNATINALLTLTGQLAQSNPGAVGQGMVLGIQTLETGVFGGVVIGLVTCALHQRFNKIALPQFLGFFGGSRFVPIISALAAIVVGAAMTVIWPHFQKLIFGLGGLVEATGYVGTLLYGFILRMLGPFGLHHIFYLPFWTTALGGSEIVNGQLVEGTQRIFFAQLADPTTQQFYIGTSRFMSGRFITMMFGLIGACLAMYHTAKPENKKRVAGLLLSAALTSFLTGITEPIEFSFLFVAPVLYVIHAFFDGLAFMLAHILHITIGQTFSGGFIDFILFGVLQGEAKTHWLMVPLVGVPWFFLYYFTFRFLITRFDFATPGREKETQDSVAMKDSERAQAVVAGLGGRENLQEVDCCATRLRVTVNDGTKVDEAALKATGARGVILRGNGVQVIYGPHVTIIKNEVEELLS
>NC_017933.1|WP_014728156.1|837093_837921_-|MurR/RpiR-family-transcriptional-regulator
MSDHENLLLKLRQALSGFSPTQRKLGDYLLSDPARVLYLTITELARESDTSEASVTRLCRALGCKGYTEFKMALALDVQRGQAPRAQSGDALDALVEESVQALRDTAQLLDRAVLEQAAQALHQARSVQIYGVAASTIIGEYLHYKLLRLGKAAHLFSDMHRASMNATTLGETDLVVAISSSGSTRDLLHAVTLARKAGAPVLTLSNTPRSPLASLSNMLLVAAKPEGPLNAGALNAKVGAMLLVELLTASLIASDSRYREISQQTASATLPLLL
>NC_017933.1|WP_014728155.1|835661_836771_-|SDR-family-oxidoreductase
MKTLLITGVTGFLGGAVLEKILQRTEKINLLLLVRAQNSEAGLARVLSNMRKFNLSEAQLAMLNTTQVLCGDLGEPESFLHDTRLDSVTHVINCAAVASFGNNPLIWKVNVEGSLAFARRMAEVAGLQRFLHVGTAMSCTPEPHSLVPESTEFRENAEHLVTYTHSKSTIEQLMRQHCPQLPLVIARPSIVVGHTHHGCQPSTSIFWVFSMGLMLQKFMCSLEDRVDVIPVDYCAAALLLLLDKDIAQGEVVHISAGEENSVRFADIDIAMAKAQEKAPIADNYAQVSYETLVKMRRELKTIFGPCNERLMLKAMRLYGAFATLNVRFSNDKLLKLGMPKPPRFTDYIARCVQTTNGLTIPQQMEVDFK
>NC_017933.1|WP_004386867.1|834312_835611_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAIVGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAASKGMPLYEHIAELNGTPGKFSMPVPMMNIINGGEHADNNVDIQEFMIQPVGASSVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEDLTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_017933.1|WP_004386866.1|832592_834230_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTRMTRRNNFTTGRIYSEVLRKERRGDYLGATVQVIPHITNAIKERILAGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEVGREHTMFMHLTLVPYMAAAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGEELLKGLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVAMIEYARNVAGMENANSTEFVPDCKYPVVALITEWRDENGNVETRSEKSDLGGTMRLGAQQCQLSDDSLVRKLYGEPVITERHRHRYEVNNMLLKPIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEYQKRQAK
>NC_017933.1|WP_014728154.1|831575_832367_+|nucleoside-triphosphate-pyrophosphohydrolase
MTQIDRLLGIMKRLRDPQNGCLWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFNFDDICAAISDKLERRHPHIFGDADFGNSAEVLANWEKTKSAERAEKAQHSALDDIPESLPALMRAQKIQKRCSAVGFDWTSLGPVVDKVHEEIDEVMHEAQQAVIDEAKLEEEIGDLLFATVNLSRHLGAKAETALQKANRKFERRFRQVEAIIRAQGLEMEQASLEQMEAAWQRVKRQEIDS
>NC_017933.1|WP_004386865.1|829240_831475_+|GTP-diphosphokinase
MVAVRSAHLNKAGEFDHEKWVASLGIASQPSCERLTETWRYCEQQTQGHPQADLLLWRGVEMVEILTTLSMDIDTLRAALLFPLVDGGVVSEEVLKESVGKSVVGLIHGVRDMAAIRQLKATHHDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKRIAKLLHERRIDREHYIDEFVTHLRTAMKEEGVKAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGVRNGHEDRIAWLRKLIAWQEEMADSGEMLDELRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVGTSRARAKIHAWFRKQDRDKNIIAGRQILDDELAHLGISLKEAEKHLLPRYNFNEVDELLAAIGGGDIRLNQMVNFLQAQFNKPSAEEQDAAALRQLQQKTYTPQGRNTRDNGRVVVEGVGNLMHHIARCCQPIPGDDIVGFITQGRGISIHRADCDQLAELQSHAPERIVDAVWGESYSAGYSLIVRVTANDRSGLLRDITTILANEKVNVLGVTSRSDTRQQLATIDMEIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NC_017933.1|WP_004387911.1|842479_842842_-|6-carboxytetrahydropterin-synthase-QueD
MPTTLFKDFIFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPIYDSLDHYYLNDIPGLENPTSEVLARWIWDQMKPRLPLLSAVMIKETCTAGCVYRGE
>NC_017933.1|WP_014728161.1|843146_844949_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPNALLPLSPEQLARLQTATHDFTPTQLAWLSGYFWGMVNQQPGAAVMQKPAAPASVITLISASQTGNARRVAEALRDDLLAAQLNVNLVNAGDYKFKQIAQEKLLIVVASTQGEGDPPEEAVALHKFLLSKKAPKLDGTAFAVFGLGDTSYEHFCQAGKDFDTRLAELGAERLLDRVDADVEYQAAAQAWRQRVVDVLKARVPKEAPSQAAITASGAVNLVDSTPYTKESPLTATLSVNQKITGRHSEKDVRHIEIDLGDAGLRYQPGDALGVWYQNDPALVQELLELLWLKGDEPVTVGEKTLPLSEALQWHFELTVNTAAIVENYATLTRSEALLPLVGDKAKLQDYAARTPIVDMVRFAPAQLEADQLLGLLRPLTPRLYSIASSQAEVENEVHITVGVVRFDIEGRARAGGASSYLADRLEEDSEVRVFIEHNDNFRLPATPETPVIMIGPGTGIAPFRAFMQQREADGATGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQDHKIYVQDKIREQGAELWRWLQEGAHLYVCGDANRMAKDVEQALLEVIAAYGGMDAEAADEYLSELRVERRYQRDVY
>NC_017933.1|WP_014728162.1|844948_846661_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKRESNFLRGTIAEDLHDGLTGGFNGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMMLRCRLPGGIMTPQQWLAIDKFAEENTIYGSIRLTNRQTFQYHGLLKKNVKPAHQMLHSIGLDALATANDMNRNVLCTSNPVESQLHAEAWEWAKKLSEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVVPPQNDVDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTATEFGYIPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGPDVFKAEVERRAGVTFEPVRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDFPDKPLKTGLKEIAKIHKGDFRLTANQNLIVAGVPEGDKAKIEQLARAHGLMAGVTPQRENSMACVSFPTCPLAMAEAERFLPQFIDKVDGIMAKHGLAEEHIVLRVTGCPNGCGRAMLAELGLVGKAPGRYNLHLGGNRIGTRIPRMYRENITESEILDNIDELVGRWAQEREPGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_017933.1|WP_004387915.1|846818_847553_+|phosphoadenosine-phosphosulfate-reductase
MSVLDLHALNALEKDARAGALADTNAQLEALSAEARVSWALENLPGEFVLSSSFGIQAAVCLHLVTQQRPDIPVILTDTGYLFPETYRFIDELTEKLNLNLKIYRAEQSPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRDQSGSRANLPVLGVQRGVFKILPIIDWDNRTVYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_017933.1|WP_014728163.1|847581_848568_-|aminopeptidase
MFSAVRRCTLSLALSVCFTLPAFSQPLHPGDIASEQTRHIATLFPGRMTGSPAEMLAADYLRQQFVRLGYQSDIRAFHSRYIYTAGNHRTNWQNVTGSTVIAAHEGASPQQIIVMAHFDTYAPQSDADVDNNLGGLTLQGVDDNAAGVGVMLELAERLKDVPTRYGVRFIATSGEEEGGMGAENLLKRMSDIEKKQTLLVINLSHLVAGDKLAFTSGKRTPAAVRQLTRDSAVKLARRFGIPVAANSVLPEDNDAAAFDNAGIPVLAIAAVNDARHRGRHALAPVAHNAREDSLQYLDQTLPGRIDKRCRDVMRVLLPLVKTLAKAEK
>NC_017933.1|WP_014728164.1|848812_850228_+|uroporphyrinogen-III-C-methyltransferase
MEYLPLFAQLKQRPVLVVGGGEVALRKIALLRRAGACVSVVAKKLHPELAALEQEGALRWLAQSFEPAQLDAVFLVIAATSDAALNRRVFDEANARQRLVNVVDDQPLCSFIFPSIVDRSPLIVAISSSGNAPVLARLLREKIESLLPASLGRMAEVAGGFRDRIKARIPTTDGRRRFWEKAFRGRFASLMAAGDTRAAEAVLEAELNAPQGPQGEIILVGAGPGDAGLLTLRGLQVMQQADVVLYDHLMSDGVLDLVRRDADRICVGKRAGAHAVAQHETNQMLIDFAREGKTVVRLKGGDPFIFGRGGEELEAAKAAGVPFQVVPGVTAASGATAYAGIPLTHRDYAQSAVFVTGHYKPDSEPFDWALLAKSRQTLAIYMGTMKAAEISQQLIAHGRDATTPVAVISRGTRDDQRVLTGTLDTLNILAKDAPMPALLVVGEVVQLHQQLAWFQHSTDAENPRSSVVNLA
>NC_017933.1|WP_004387918.1|850237_851146_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIYLENIEIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEEIKPRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_017933.1|WP_007777742.1|851155_852583_+|sulfate-adenylyltransferase-subunit-CysN
MNTTIAQQIAKEGGVEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLMDARKGVLDQTRRHSFISTLLGIKHLVVAVNKMDLVDFSEETFERIRQDYLTFAGQLPGNLDIRFVPLSALEGDNVAVQSQNMPWYTGPTLLEVLENIEIQRVVDEQPLRFPVQYVNRPNLDFRGYAGTVAGGVVKVGQRVKALPSGVESSVARIVTFDGDLEEAGAGEAVTLVLKDEIDISRGDLLVDASQTLAAVQSAAVDVVWMAEQPLVPGQSYDIKIAGKKTRARVDNIHYQVDINNLTQRVVENLPLNGIGLVDLTFDEPLNLDKYQENPVTGGLIFIDRLSNVTVGAGMVREPQQNVYQEPSAFSAFELELNQLIRRHFPHWGARDLLGGK
>NC_017933.1|WP_007870417.1|852582_853188_+|adenylyl-sulfate-kinase
MAQHDENVVWHAHPVTAAQREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQLGVSTYLLDGDNVRHGLCSDLGFSDDDRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRDQLGEGRFIEVFVDTPLSVCEARDPKGLYKKARAGELRNFTGIDAVYEAPESPEIHLDGQQLVTNLMAQLLDLLRREDIIKS
>NC_017933.1|WP_004387921.1|853237_853561_+|DUF3561-family-protein
MRNTTNMIVTQADSAPAVEEPTWAWPGAVVGFISWLLALGAPFLLYGSNTLFFMLYTWPFFLALMPVAVVVGVAVFSLLERRLVYSTLATLISVGLMFGLLFLWLVS

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Crispr_ID: NC_017933_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_5

1134847-1134981

Orphan

Consensus_repeat	Method
TTCGTGGTTTTGTAGGGTGGGTAAGCGAAGCGCACCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_5

>merge|NC_017933|5|1134847-1134981|CRISPRCasFinder
TTCGTGGTTTTGTAGGGTGGGTAAGCGAAGCGCACCCACCTGATGTTAACCCGGCGGGTGCGCAGGCTTACCCGCCCTACACGGCAAAGTGGTTATTCGTGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACC

>NC_017933|5|5|1134847-1134981|CRISPRCasFinder
TTCGTGGTTTTGTAGGGTGGGTAAGCGAAGCGCACCCACC	TGATGTTAACCCGGCGGGTGCGCAGGCTTACCCGCCCTACACGGCAAAGTGGTTA
TTCGTGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014728330.1\|1135802_1136795_-\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
NC_017933.1\|WP_014728337.1\|1143979_1144732_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA	unknown	unknown	gnl\|CDD\|236190
NC_017933.1\|WP_041460826.1\|1136791_1137799_-\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NC_017933.1\|WP_004386541.1\|1125597_1126242_-\|nitrate/nitrite-response-regulator-protein-NarP	unknown	unknown	gnl\|CDD\|182431
NC_017933.1\|WP_014728334.1\|1140322_1141489_+\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NC_017933.1\|WP_014728336.1\|1143113_1143983_+\|isochorismatase	unknown	unknown	gnl\|CDD\|224452
NC_017933.1\|WP_014728322.1\|1121552_1121984_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_017933.1\|WP_014728332.1\|1137906_1139151_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NC_017933.1\|WP_041460825.1\|1135014_1135806_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NC_017933.1\|WP_014728323.1\|1122346_1125463_-\|multidrug-efflux-RND-transporter-permease-AcrD	unknown	unknown	gnl\|CDD\|182544
NC_017933.1\|WP_014728326.1\|1128263_1129208_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728325.1\|1127144_1128188_+\|DUF1176-domain-containing-protein	unknown	unknown	gnl\|CDD\|369032
NC_017933.1\|WP_014728327.1\|1129267_1131262_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NC_017933.1\|WP_014728328.1\|1132514_1134794_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NC_017933.1\|WP_041460827.1\|1144732_1145146_+\|proofreading-thioesterase-EntH	unknown	unknown	gnl\|CDD\|182337
NC_017933.1\|WP_014728333.1\|1139176_1140136_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NC_017933.1\|WP_100207200.1\|1122179_1122239_+\|protein-YpfM	unknown	unknown	unknown
NC_017933.1\|WP_007893829.1\|1131282_1132233_-\|transaldolase	unknown	unknown	gnl\|CDD\|183458
NC_017933.1\|WP_014728335.1\|1141499_1143104_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NC_017933.1\|WP_007777142.1\|1126439_1127015_+\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014728330.1\|1135802_1136795_-\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
NC_017933.1\|WP_014728337.1\|1143979_1144732_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	3.17373e-166
NC_017933.1\|WP_041460826.1\|1136791_1137799_-\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	5.25691e-165
NC_017933.1\|WP_004386541.1\|1125597_1126242_-\|nitrate/nitrite-response-regulator-protein-NarP	gnl\|CDD\|182431	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP.	1.7554e-131
NC_017933.1\|WP_014728334.1\|1140322_1141489_+\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NC_017933.1\|WP_014728336.1\|1143113_1143983_+\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	9.01184e-126
NC_017933.1\|WP_014728322.1\|1121552_1121984_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.24301e-09
NC_017933.1\|WP_014728332.1\|1137906_1139151_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NC_017933.1\|WP_041460825.1\|1135014_1135806_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	8.87375e-166
NC_017933.1\|WP_014728323.1\|1122346_1125463_-\|multidrug-efflux-RND-transporter-permease-AcrD	gnl\|CDD\|182544	PRK10555, PRK10555, multidrug efflux RND transporter permease AcrD.	0
NC_017933.1\|WP_014728325.1\|1127144_1128188_+\|DUF1176-domain-containing-protein	gnl\|CDD\|369032	pfam06674, DUF1176, Protein of unknown function (DUF1176). This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.	7.52084e-128
NC_017933.1\|WP_014728327.1\|1129267_1131262_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NC_017933.1\|WP_014728328.1\|1132514_1134794_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NC_017933.1\|WP_041460827.1\|1144732_1145146_+\|proofreading-thioesterase-EntH	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	1.84631e-91
NC_017933.1\|WP_014728333.1\|1139176_1140136_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NC_017933.1\|WP_007893829.1\|1131282_1132233_-\|transaldolase	gnl\|CDD\|183458	PRK12346, PRK12346, transaldolase A; Provisional.	0
NC_017933.1\|WP_014728335.1\|1141499_1143104_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NC_017933.1\|WP_007777142.1\|1126439_1127015_+\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	2.79453e-120

>NC_017933.1|WP_014728328.1|1132514_1134794_+|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase
MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIAADPLAAHKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEIDEHDPDKVIDVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFHDDQHGTAIICTAAVLNGLRVVQKNISDVRLVVSGAGASAIACMNLLVALGMQKHNIVVCDSKGVIYKGREENMAETKAAYAIDDNGKRTLGEVIEGADIFLGCSGPKVLTQEMVKKMADSPLILALANPEPEIMPPLAKAVRPDAIICTGRSDFPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVHAIAELAHAEQSEVVASAYEDQELSFGPDYIIPKPFDPRLIVTIAPAVAKAAMDSGVATRPIEDFDAYKDKLTEFVYKTNLFMKPVFNQARKDPKRVVLTEGEEPRVLHATQELITLGLAKPVLVGRPGVIEMRLKKLGLQIEAGKDFEIVNNESDPRFKEYWNEYYSIMKRRGITQEQAQRAVIGNSTVIGAIMVHRGEADAMICGTIGDYHEHFSVVQQIFGYRDGVKAAGAMNALLLPSGNTFIADTYVNDDPTPEQLAEITVMAAETVRRFGIEPKVALLSHSNFGSSDSPAASKMRETLQLVRERAPDLMIDGEMHGDAALVESIRNDRMPDSPLKGSANILIMPNVEAARISYNLLRVSSSEGVTVGPVLMGVSKPVHVLTPIASVRRIVNMVALAVVEAQTNPL
>NC_017933.1|WP_007893829.1|1131282_1132233_-|transaldolase
MNQLDGIKQFTTVVADSGDIESIRNYQPQDATTNPSLLLKAASLEHYQHLFTDALEYGKKRGSTQKEQVAEASDKLAVNVGAEILKSIPGRVSTEVDARLSFDKEKSIAKARRLVELYQEQGIDKSRILIKLASTWEGIRAAEELEKEGIHCNLTLLFSFAQARACAEAGVYLISPFVGRIYDWYNTRKPMDPYVVDEDPGVKSVRNIYDYYKQHNYQTIVMGASFRRTEQILALAGCDRLTISPNLLKELQESDAPVARKLIPASQGFNRPQPMTEAEFRWEHNQDAMAVEKLAEGIRQFAVDQRSLEDLLAAKL
>NC_017933.1|WP_014728327.1|1129267_1131262_-|transketolase
MSRQLLANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWNDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLSGYDLPMEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAEKTLAAQFNRPGHEIVDHNTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHEIDGHDPEAIKRAIEEAKQVTDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRKQLGWNYPPFEIPDEVYKGWDAKEKGRQVEASWNEKFAAYQEAYPELAAEFNRRMGGEMPENWQQVTQEYIEKLQAEPAKIASRKASQNALNVYGPVLPELLGGSADLAPSNLTIWSGSTSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVETAVAWKAAIERHNGPTALILSRQNLAQIERSPQQLKDVARGGYILKDAGGKPDLILIATGSEVEIAVQAAEKLRGDGVAVRVVSLPSTDVFDAQDEAYRESVLPSDVSARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPAEKLFPYFGFTVENVVEKARKVLGK
>NC_017933.1|WP_014728326.1|1128263_1129208_+|hypothetical-protein
MAYTQGLRAVLGLALAGLALSVSAAMTPQDERDANALVARWNDFKNHPSAQAGVALYGEQVSWYGKVLTRDAVIQENAAFVQKHPHYAQTIISNITLTEQDGQPLAVQATFVKQAGLEPQTPRNYPAQLTLTKQAAGWRISEETDWITEANRQKTRDYRLAGGRFNGTAKSYAWLTAHDPKTNGVCDESGDCECQLWNSDPAIKPAAIASCIGGGVEALSNLDDSGRDRALIYPEWWSSAWRATYLYDVQQQQWVKAIPSFSMNLNVQEDVDGTSLVTRDPQHPGQVIVSQAQWDEKTEDIVINKSAETLNVLK
>NC_017933.1|WP_014728325.1|1127144_1128188_+|DUF1176-domain-containing-protein
MLFRLLSLFSCSLLLASPLWAAPVQKIFSDWQVTCNNQNFCTARNVGGHQDLVMTLSRSAGAKPDASLRIEAGKPEAAVNKAPPLAPRLLLDGKTLVPAGSKWRDMPRRLMTDDPTTIIDFLDQIKESSVITLKDGPGRLSLDGLKAALLFIDAQQKRVGSETAWIKKGNNPPLSVPPAPALKGVKITNPTPTPLSHDELNELLDYGTWRMTNSQCSLDPMRREVRISALTDDTALMIISCEAGAYNTVDLAWLVSRQKPFASRMVRLRLPFLPADKEQELELMNASFDEKTKELTTLSKGRGLGDCGVATRWRFDGQRFRLVRYAEEPSCDNWHGPDAWPTLWVTQ
>NC_017933.1|WP_007777142.1|1126439_1127015_+|GDP-mannose-pyrophosphatase-NudK
MSLNVELIKDKILSENYFVLRNITYDLTRKDGEVVRHKREVYDRGNGAAVLLYNREKKSVVLIRQFRVATWVNGNPDGMLIEACAGLLDDDEPEVCIRKEAIEETGYRVNAAEKVFELYTSPGGVTELIHLFIAEYDDASRANEGGGVEDEEIEVLEMPFSEALEKVKQGVIRDAKTVLLLQHLQLRGIMD
>NC_017933.1|WP_004386541.1|1125597_1126242_-|nitrate/nitrite-response-regulator-protein-NarP
MSQIIPWHVLIVDDHPLMRRGLRQLLETDARFRVTGEAGSGEEAIAQARALSPDVILLDLNMRGLSGLDTLTMLRRDGVNARIIVLTVSDAQSDIFAMTDAGADGYLLKDSEPEALLEAIRAGAAGAGAFSEQVQAYLLARKPDEQRDAPFALLTGRELDVLQEVARGLSNKQIASALQISEETVKVHIRNLLRKLNVRSRVAATVLFLGSRSA
>NC_017933.1|WP_014728323.1|1122346_1125463_-|multidrug-efflux-RND-transporter-permease-AcrD
MANFFIDRPIFAWVLAILICLTGTLAIFSLPVEQYPELAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQNQLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRINGVGDIDAYGSQYAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQALNATINAQSLLQTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMETAQLVLNRLDELSHYFPHGLEYKVAYETTSFVKASITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSDEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFGWFNRTFERSALRYESAVGKILQRSLRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFVTSVQLPSGSTQQQTLKVVQQVERYFFEKEKANVASVFATVGSGPGGNGQNVARMFVRLNPWEDRDPDTGSADAIIERATQAFRHIKEARVFASSPPAISGLGSSAGFDMELQDHAGLGHDALMQARDRLLDMASQEPALTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQSAAKYRMLPEDITRWYVRNQAGAMVPFSAFATSRWETGSPRLERYNGYSALEIVGEAAPGVSTGTAMDVMEKLVSQLPTGFGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALLATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNSKGHELIAATLDACRQRLRPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAVFFVPLFFVLIRRRFPLKPAPEE
>NC_017933.1|WP_100207200.1|1122179_1122239_+|protein-YpfM
MIEHELGNWKDFIEAMLRK
>NC_017933.1|WP_014728322.1|1121552_1121984_-|GNAT-family-N-acetyltransferase
MRIITNQYSETPDWQALATLIERAGLGARDPQEVERCYRNSTFCWYGFHEGKLVATAHAISDLTWSSYVADIVVDPDYQGRGFGNQLMDEILATLLPFGKVFIYAVLDKVAFYKKYQFRELTSGMVCATDEKLFKMHEQGYIR
>NC_017933.1|WP_041460825.1|1135014_1135806_-|iron-enterobactin-ABC-transporter-ATP-binding-protein
MTMTSRLTGEALTLGYGDFRVADGLNVAIPDGKFTAIIGPNGCGKSTLLRTLSRLMKPLGGQVRLDGKAIQHFATKEVARRIGLLAQNASAPGDITVAELVARGRYPHQPLFTRWRDEDERAVQKAMAATGVTALADQSVDTLSGGQRQRAWIAMVLAQDTSILLLDEPTTWLDISHQIDLLELLCTLNREQGYTLAAVLHDLNQACRYANHLIALRDGKIIAEGAPSEIVDAALIEAIYGLRCMIIEDPVAGTPLVVPLGRR
>NC_017933.1|WP_014728330.1|1135802_1136795_-|iron-enterobactin-ABC-transporter-permease
MRSVPPRLGLFCLLTLSLCTGLGLWALTQGAVTLEARKVLDALTGHAPRNVSLIVTEWRLPRVAMALLLGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLTGQHQSAIAFAAIAGGTLTAFVVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLQASLETALSAGLWNAGSLNGITWGKTLPASPLLVLALLASALLVRRMRLLEMGDDSACALGVAVERSRLLLMLTGVVLTAGATAMAGPISFVALVAPHIARRLSGTARFGLTQAALCGALLLLAADLCAQYLFTPYQLPVGTVTVCLGGIYLIALLIQESRRR
>NC_017933.1|WP_041460826.1|1136791_1137799_-|Fe(3+)-siderophore-ABC-transporter-permease
MSASRLSSRMVVLLCLLLLLLLMAALSLRVGAKSLPFSLVMDALTGTCREADCTIVLDARLPRTLAGIVAGLSLGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALWGVSDPLHILALALCGALAATLIVAFTGSAGGGQLSPVRLTLAGVALAAVLEGLSGGIALLNPVVYDQLRFWQAGSLDIRTLTTLKAIAPLVLTGAVTALLLGRALNSLSMGADTATALGSRVARTQVLGLVAITLLCASATAVVGPIAFIGLMMPHLARWLVGADHRWSLPVTLLATPSLLLLADIIGRLVVPGELRVSVVSAFIGAPALIYLVRQRRGGGAL
>NC_017933.1|WP_014728332.1|1137906_1139151_+|enterobactin-transporter-EntS
MNRHSLLLNLSLLKTHPAYRAVFLARFISILGLGLLGVAVPVQIQTLTGSPFQVGLAVTLTGAAMFIGLMTGGVLADRYERKTLILLARSTCGLGFIGLWINAMLPAPSVIAIYALGLWDGFFGAIGVTALLAATPAIVGRENLMQAGAITMLTVRLGSVISPLLGGVLLAWGGVAWNYALAALGTFLTLLPLLTLPALPAPQMQRQHPLRALADGLRFLAASPVVGGVALVGALLTMASAVRVLYPALANHWQMASGEIGVLYAAVPLGAALGALTSGGLAHAPRPGRTLLVSSVLALAAVSVFSLMPFWPLAFICLTLFGYLSGMSSLIQYQLIQTRTPDHMLGRINGLWTAQNVTGDAIGAATLGGMGAWLSPVSAASVGGMGLAIITLALALLLAELRCLRQPPPEPAPH
>NC_017933.1|WP_014728333.1|1139176_1140136_-|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MTFTSALRAVLAASLLVLGISSVSQAASWPRQVTDSRGVHTLEKAPQRIVSTSVTLTGSLLAIDAPVVASGATSPGNRVADDQGFLRQWGDIAKARHVERLYIGEPNAEAVAAQMPDLILVSATGGDSAQALYEQFSAIAPTLIINYDDKSWQALLTQLGEITGHEKQAAERIAQFDQQLAQAKAQMTLPPQPVSALVYNPAAHGANLWTAESAQGKLLGQLGFTLAPPPAAHSLTSMGKRHDIIQLGGENLAAGLNGETLFLFAADDKDAAALMRDPLLAHLSAVKNKRVYALGTETFRLDYYSASLLLKRLEALFKK
>NC_017933.1|WP_014728334.1|1140322_1141489_+|isochorismate-synthase-EntC
MDTSLAGERCDAAATLSSDSFFFMSPYRSFTTRGCFMRLETPAADGAARHGVFQTALRNAFDSARRQGIARPMIVGAIPFDTRKPSALFIPESYSDTARGGYSLIDNSAAPRVMSREALPDEETFMAMVARAAALTATPAVSKIVLSRLIDITTEQAPDSLALLARLVAQNPASFNFHVPLPDGGALLGASPELLLRKDGNTFSSLPLAGSARRHADAAQDKSAGQALLCSAKDRHEHELVTQAMRDVLAPRSQRLAMPGAPELITTPTLWHLATPVEGETRFADDNALSLACLLHPTPALSGYPHEAAKAYIAELEPFDRELFGGIVGWCDADGNGEWAVTIRCARLRENQVRLFAGAGIVPASDPASEWRETGVKLSTMLHVLGLH
>NC_017933.1|WP_014728335.1|1141499_1143104_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MTIPYTRWPDDLAARYRARGYWLGLPLTDILSRHAQSAATALIDGERRYSYRELDAAATRLAGALARRGLQRGDTALVQLGNVAEFYIVFFALLKIGVAPVNALFSHQRTELDAYARQIAPGLLIADREHALFSDDAYITALKAEHSSLRVTLLRGDGLETLMSAPAADFTPTPSAADEVAFFQLSGGSTGTPKLIPRTHNDYYYSIRRSVEICEFSRETRYLCALPAAHNYPLSSPGALGVFFAEGCVVLARDPSATLCFPLIEAHQINVTALVPPAVSLWLQAIQEWGDNRQLASLKLLQVGGARLSDTLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDPDECIFTTQGRPMSPDDEVWVADENGNPLPRGETGRLMTRGPYTFRGYYNSPEHNASAFDENGFYCSGDLVAIDEQGYITVQGREKDQINRGGEKIAAEEIENLLLGHEAIVHAGLVSMEDSLLGEKSCAYIVTTRPVKAVEIRRFLRELGVADFKLPDRVERVDELPLTPVGKVDKKQLRLWLAARQPVSE
>NC_017933.1|WP_014728336.1|1143113_1143983_+|isochorismatase
MAIPKLNAYTLPTAVDLPQNKVSWALEPPRAALLIHDMQEYFLNFWGENCPMIEQVVANIAALRAYCKAQGIPVYYTAQPNNQSDADRALLNDMWGPGLNNHPEKQKVVAALAPDADDTVLVKWRYSAFHRSPLEHALKETGRDQLIICGVYAHIGCMITATDAFMRDIQPFMVADALADFSRDEHLMALNYVAGRAGRVVMTADLLPASEPDAPGSKAALRALVLPLLDESDEPEDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWALLSREPQA
>NC_017933.1|WP_014728337.1|1143979_1144732_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA
MTLDFQGKNVWVTGAGKGIGYTTALAFAAAGANVTGFDLVFPLADYPFACETLDVADAAAVASVCERLLGNDARLDVLVNAAGILRMGATDEIAPDDWQQTFAVNVGGAFNFFQQTMARFRTQKGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAPYGVRANLVSPGSTDTDMQRTLWKSDDAEQQRIRGFAEQFKLGIPLGKIAQPQEVANTILFLASELASHITLQDIVIDGGSTLGA
>NC_017933.1|WP_041460827.1|1144732_1145146_+|proofreading-thioesterase-EntH
MIWKRHMTLEALNATSVGTLVEHLGIVYTRLGDDLLEATMPVDTRTHQPFGLLHGGASAALAETLGSMAGYLTTRDGQCVVGTEISASHHRAVSQGQVRGVCQPLHLGRQSQCWEIVIYDEQGRRCCTSRLSTAILG

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Crispr_ID: NC_017933_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_6

1301891-1301981

Orphan

Consensus_repeat	Method
GCTTCGCTTACCCACCCTACGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_6

>merge|NC_017933|6|1301891-1301981|CRISPRCasFinder
GCTTCGCTTACCCACCCTACGGCCAACGGTTCGGCTGTTAACGGTTCGGCTGTAAATGGTGGGTTGTGCTTCGCTTACCCACCCCTACGGC

>NC_017933|6|6|1301891-1301981|CRISPRCasFinder
GCTTCGCTTACCCACCCTACGGCC	AACGGTTCGGCTGTTAACGGTTCGGCTGTAAATGGTGGGTTGT
GCTTCGCTTACCCACCCCTACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_007897478.1\|1304656_1305388_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NC_017933.1\|WP_007776742.1\|1291977_1292409_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NC_017933.1\|WP_041460830.1\|1295776_1296319_+\|membrane-protein	unknown	unknown	gnl\|CDD\|284781
NC_017933.1\|WP_004388278.1\|1293537_1294218_+\|transcriptional-regulator-TctD	unknown	unknown	gnl\|CDD\|185376
NC_017933.1\|WP_014728409.1\|1296412_1297609_+\|nicotinamide-mononucleotide-deamidase-related-protein-YfaY	unknown	unknown	gnl\|CDD\|179629
NC_017933.1\|WP_014728413.1\|1317889_1318954_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NC_017933.1\|WP_004387479.1\|1315549_1316689_+\|porin-OmpC	unknown	unknown	gnl\|CDD\|182543
NC_017933.1\|WP_004387472.1\|1300712_1301843_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NC_017933.1\|WP_007897480.1\|1305547_1308184_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_017933.1\|WP_014728412.1\|1316785_1317817_+\|FAD:protein-FMN-transferase-ApbE	unknown	unknown	gnl\|CDD\|182478
NC_017933.1\|WP_004387469.1\|1297945_1299298_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NC_017933.1\|WP_014728407.1\|1294198_1295635_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|378015
NC_017933.1\|WP_007897481.1\|1308369_1311219_+\|two-component-system-sensor-histidine-kinase-RcsC	unknown	unknown	gnl\|CDD\|182772
NC_017933.1\|WP_007676706.1\|1311391_1312042_-\|transcriptional-regulator-RcsB	unknown	unknown	gnl\|CDD\|182771
NC_017933.1\|WP_004387471.1\|1300456_1300711_-\|2Fe-2S-ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182668
NC_017933.1\|WP_014728410.1\|1299307_1300366_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NC_017933.1\|WP_029464214.1\|1312058_1314731_-\|phosphotransferase-RcsD	unknown	unknown	gnl\|CDD\|236726
NC_017933.1\|WP_014728411.1\|1302018_1304304_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NC_017933.1\|WP_014728406.1\|1292423_1293404_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NC_017933.1\|WP_014728414.1\|1318953_1319598_+\|DNA-oxidative-demethylase-AlkB	unknown	unknown	gnl\|CDD\|237957

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_007897478.1\|1304656_1305388_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	8.53427e-172
NC_017933.1\|WP_007776742.1\|1291977_1292409_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	7.43171e-07
NC_017933.1\|WP_041460830.1\|1295776_1296319_+\|membrane-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	3.52708e-66
NC_017933.1\|WP_004388278.1\|1293537_1294218_+\|transcriptional-regulator-TctD	gnl\|CDD\|185376	PRK15479, PRK15479, transcriptional regulator TctD.	4.11958e-142
NC_017933.1\|WP_014728409.1\|1296412_1297609_+\|nicotinamide-mononucleotide-deamidase-related-protein-YfaY	gnl\|CDD\|179629	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY.	0
NC_017933.1\|WP_014728413.1\|1317889_1318954_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	0
NC_017933.1\|WP_004387479.1\|1315549_1316689_+\|porin-OmpC	gnl\|CDD\|182543	PRK10554, PRK10554, outer membrane porin protein C; Provisional.	0
NC_017933.1\|WP_004387472.1\|1300712_1301843_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NC_017933.1\|WP_007897480.1\|1305547_1308184_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_017933.1\|WP_014728412.1\|1316785_1317817_+\|FAD:protein-FMN-transferase-ApbE	gnl\|CDD\|182478	PRK10461, PRK10461, thiamine biosynthesis lipoprotein ApbE; Provisional.	0
NC_017933.1\|WP_004387469.1\|1297945_1299298_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NC_017933.1\|WP_014728407.1\|1294198_1295635_+\|sensor-histidine-kinase	gnl\|CDD\|378015	pfam08521, 2CSK_N, Two-component sensor kinase N-terminal. This domain is found in bacterial two-component sensor kinases towards the N-terminus.	2.0269e-40
NC_017933.1\|WP_007897481.1\|1308369_1311219_+\|two-component-system-sensor-histidine-kinase-RcsC	gnl\|CDD\|182772	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC.	0
NC_017933.1\|WP_007676706.1\|1311391_1312042_-\|transcriptional-regulator-RcsB	gnl\|CDD\|182771	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional.	4.06532e-154
NC_017933.1\|WP_004387471.1\|1300456_1300711_-\|2Fe-2S-ferredoxin-like-protein	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	9.86023e-51
NC_017933.1\|WP_014728410.1\|1299307_1300366_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NC_017933.1\|WP_029464214.1\|1312058_1314731_-\|phosphotransferase-RcsD	gnl\|CDD\|236726	PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.	0
NC_017933.1\|WP_014728411.1\|1302018_1304304_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NC_017933.1\|WP_014728406.1\|1292423_1293404_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	1.672e-107
NC_017933.1\|WP_014728414.1\|1318953_1319598_+\|DNA-oxidative-demethylase-AlkB	gnl\|CDD\|237957	PRK15401, PRK15401, DNA oxidative demethylase AlkB.	1.31684e-155

>NC_017933.1|WP_004387472.1|1300712_1301843_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGEGTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLMRSGEDDPEMAAIAEECKQECYDLFVLAAQQEKEWAEYLFQGGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEIDHDDLSSFQL
>NC_017933.1|WP_004387471.1|1300456_1300711_-|2Fe-2S-ferredoxin-like-protein
MGRITLRVTGTELSCPDEHPSLLAALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAFIQEGEILPCCCKPQGDIEIEM
>NC_017933.1|WP_014728410.1|1299307_1300366_+|glycerophosphodiester-phosphodiesterase
MKLKMTLAALAIGVMSASALAADKLVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARKDGRYYAIDFTLAEIKSLKFSEGFELENGKKVQTFPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQAGKDIALKVLETLKKYGYTTKQDKVYLQCFDANELKRIKNELEPKLGMDLKLVQLIAYTDWNETQEKQADGKWVNYRYDWMFKPGAMKQIAQYADGIGPDYHMLVAEGSTKDHVTLTDMAKEAHASHLQVHPYTVRADQLPVYATDVNQLYDVLYNKAEVDGLFTDFPDKAVSFLKDNR
>NC_017933.1|WP_004387469.1|1297945_1299298_+|glycerol-3-phosphate-transporter
MLSIFKPAPHRARLPDGEIDPLYRRLRWQIFMGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIMVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGRIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFAAILVAIIAFALMRDTPQSCGLPPIEAYKNDYPDDYNEKHEEELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLICGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPPGNPNIDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVLLLIIVMVGEHKHHHATLAKRG
>NC_017933.1|WP_014728409.1|1296412_1297609_+|nicotinamide-mononucleotide-deamidase-related-protein-YfaY
MLQTEMLSTGDEVLHGQIVDTNAAWLADLFFNQGLPLTRRNTVGDSLESLVSALTERSQHADILIVNGGLGPTSDDLSAEAAARAAGVELVLHEGWLAQMERFFEARGRVMAASNRKQALLPAGSEMIDNPVGTACGFAIKLNRCLIFFTPGVPSEFKRMVEHEILPRLRERFTFPEPPLCLRLTTFGRSESDLAAALDSLPLPPDVVMGYRSSTPIIELKLTGPASRRAEMEAVWPKVREVAGDSLIFEGTETLPAQIARCLREQQLSITLSEQFTAGLLALQLSGADAPLLASEVLPAQVETLAQTAHWNVDRRSRHLADLALSIASVEDDEINIALTTPQGTHAVRLRFNASRYALRIRQEICAMMALTLVRRWLNGQDVTASQGWVQVVETHTV
>NC_017933.1|WP_041460830.1|1295776_1296319_+|membrane-protein
MKNTLRLAMAGLLLAATQASAISVNGSVGEHYTNMGVGLGTESSGLQLTGNWAHNDDHGDIVGAGLGFNMPLGPFMVTPGVKAVYLSPKEGSEGYAAAVGGGLRWDLGQHLSLFGDYYYSPDSLSSGVNDYQEASAGARFSIFRPISVEAGYRYINLTGKDGDRDSKVADGPYLGVSAGF
>NC_017933.1|WP_014728407.1|1294198_1295635_+|sensor-histidine-kinase
MSWLRPESLLGKLLLFLGLPLSLLWAFSALNSYVSALNAATQAYDRTLLASARIVAERLNVHHGELQADVPWVVLDSVERNMNDRLYYKVKDTRGRVISGYDDLPAMPGGVARTELYPALAWFYHATYQGQRLRVARLLQPVNEGGVVGMAEIYVAETLQSRHLLARQLLISSALSQGGLVLLTLVLAGLLLRRVLKPMRKLSRLMVRRAPGELTPLPDLLPWSETRLLIIAFNRYMSRLRALIARQERFSADASHQLKTPLAVLKTQAAVALASPDPAQWRESLQAMSTTLDQTIDLTERLLQLATLRRAEPGETRALDVVDLVAAARESCFSRLPQARSKPVDLGYEGEEGPVWVAAEPLLLAELCANLLDNALKYTPAGGVVTVRVCVEAGEARLEVEDSGPGIDATQRDQALTPFRRLDNASTHPGAGLGLALVNDIARWHRTRAELLKGEQLGGLLVRVRLLLHASAPGQSGV
>NC_017933.1|WP_004388278.1|1293537_1294218_+|transcriptional-regulator-TctD
MRLLLAEDNRELAHWLEKALANTGFAVDCVGDGLAADHLLQNERYAVAVLDIEMPRMSGLEVLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSEGQVQEAQRLGELTFHDEGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFSLSDDVSPESIEIYIHRLRKKLLASNVQITTLRGLGYVLECSDELVAP
>NC_017933.1|WP_014728406.1|1292423_1293404_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKTSLLSTLLATSLAFSFTEAVAAEAPSRPECIAPAKPGGGFDLTCKLIQVSLQETGALEKPMRVTYMPGGVGAVAYNAIVAQRPGEPGTVVAFSGGSLLNLSQGKFGRYNVDDVRWLASVGTDYGMIAVRADSPWKTLGDLMKALEKDPNSVVFGAGASIGSQDWMKTALLAQKAGVDPHKMRYVAFEGGGEPVTALMGNHVQAVSGDLSEMVPYLTGNKLRVLAVFANERLPGQLAQVPTAKEQGYDLVWPIIRGFYVGPKVSDADYQWWVQTFEKLQQTDEFKKQRDLRGLFEFNLTGKALDEYVKNQVNDYREKAKAFGLAK
>NC_017933.1|WP_007776742.1|1291977_1292409_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MSDRIFAGIWILLCIGGLFVGWQIHSEYAYEPVGPRPFPMGIIALMLLCAVLLLLRRPDVVDWPHHAVLQRLVVMVIVLLLYAGGFEWLGFPLATALLTAVIGMLFGAQLPAALVSGVVMGGVLWYAFDRLLDVTLPLGAWLN
>NC_017933.1|WP_014728411.1|1302018_1304304_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLYDHVVKMVELGKYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLKGEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDENIRKQRIKASELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFNLGAIESLDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPIDTYKKDLDAIASEPLHYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKDGILRQVVPDYEQLKDQYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLGVKTLYYQNTRDGAEDAQDDLAPSIQDDGCESGACKI
>NC_017933.1|WP_007897478.1|1304656_1305388_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNAEKPPVAHNVDLEEIAKFEAVASRWWDTEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILSESMAREGANVTGLDMGAEPLAVARLHALESGVELNYVQQTVEEHAAQHAGAYDVVTCMEMLEHVPDPRSVVQACAQLVKPGGHVFFSTLNRNAKSWLMAVVGAEYVLRMVPKGTHDAKKFIRPSELLAWVDETPLEERHIIGLHYNPLTNRFKLAPGVDVNYMLHTQAKKPV
>NC_017933.1|WP_007897480.1|1305547_1308184_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAEVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRRTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTATGVRGIRLGEGDSVVSLIVPRGEGAILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDDIAPETDADDDAADDADE
>NC_017933.1|WP_007897481.1|1308369_1311219_+|two-component-system-sensor-histidine-kinase-RcsC
MKYFVSFRSTLKVSRYLFRALALLLWLLIALFSVFYIVSALHVKESEIRQEFNLSYDQAQRYIQRTSDVMKELKYVAENRLENIDALMKSGRGQNDALNAPSFVPLFSDSDCNSLGTSWRGSLQSLSWFLRYWHDNFSAAYDLNRVFLIGSDNLCMADFGLREIPLERDKTLQALHERIIKYRNAPQDERSNSLFWVSAGQRPGIGNFYSLTPVYLANRLQGLLGIEQTIRIENFFTPGSMPMGVTILDENDRPLFSLTGSETNLEPNGEWEQERAWFGYTSGFKQLILKKSLPPSSLSIVYSVPVDLVLERIRMLILNAVLLNVLVGIVLFTLARMYERRIFIPAENDAQRLEEHEQFNRKIVASAPVGICILRTQDGTNIISNELAHNYLNMLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLGLYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDIGCIILHVGTQGDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQFTIRIPLWQAQLPPKPNVDGLSNKRCWLAVRNASLCEYLQGLLSRNNIRVQNHHGETPDKDDILITDDENCVEWQGRGVIFFCRRHIGMPVERSPGVWMHSVAAPHELLTLLGRIYSINVDVPGSEPVLPASSTSAEQNEDMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYADRVRKTRG
>NC_017933.1|WP_007676706.1|1311391_1312042_-|transcriptional-regulator-RcsB
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPTLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSLTPADKE
>NC_017933.1|WP_029464214.1|1312058_1314731_-|phosphotransferase-RcsD
MSQPDAMIPNKFSLMPGSITRFFLLLIVVLLVTMGVMVQSAVNAWLKDKSYQIVDISHALHKRVDTYRYATWQIYDNIGASAAGQNGEGLQETRLRQDVYYLEKPHRKTEALIFGSHDSSTLDMTQRISSYLDTLWGAEGAPWSMYYLNGQDNSMILVSTLPLKDLSAGFKENSINAIADSRRAEMLQQANALDERESFSPLRKLAWQNGYYFTLRTTFNQPGHLATVVAFDVPINDLIPPGMPLESFRLEPDSSQNALTGQNKDDPDSVTINFNSNRIEISSALTSTQLRIIWEVPFGSLLMETLQNILLPLLLNIGLLALALFGYTTFRHQPSRPVEAVTNSANNAELQMLRALNEEILSVLPLGLLVHDQESSRTIMSNKIADHLLPHLNLQNITSMADQHQGIIQATVNNELYEIRLFRSQVVPRTQIFIIRDQDREILVNKKLKQAQRLYEKNQQGRSAFMQNIGAALKEPTQQLAHQAALIEAPESQVLAEQAERIARLVDEIQLVNQLEADFWRPTPTDFTIQELIDEVVPEVLPVIKRKGLQLLINNQLAANEERHGDREALRKVLLMLLHYSVTTTQIGKITLEIMAEEGARERLLFRVLDTGEGISNSEIDNLHFPFLNDTSNDQFGKANGLTFYLCNQLARRLGGHLNIKARKELGTRYSLHVTMPVEPLETEESDERLLDDVIAMIDITSNEVRNVVVRQLEQWGASCITPDERLSSQEYDIFLTDNPSNLTANGLLLSDDEAGVRRIGPGQLRVNFNISHAMQEAVLQLIEEQLAQEDIPESPMGGDENAQLHASGYYALFVDTVPDDVQRLYTESSAGDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDATAIEKYISDIDVYVKSLL
>NC_017933.1|WP_004387479.1|1315549_1316689_+|porin-OmpC
MKVKVLSLLVPALLVAGSVNAAEIYNKDGNKLDLFGKVDAEHYFSDDKGADGDQTYMRIGFKGETQVNDQITGYGQWEYQIQGNTAENDNQSWTRVAFAGLKFGDAGSFDYGRNYGVIYDVTSWTDVLPEFGGDTYGADNFLQSRGNGIATYRNTDFFGLVDGLNFALQYQGKNGSVSGENDATGGRSLLKQNGDGYGMSLTYDLGEGFSVGGAMATSKRTADQNASNAALFGEGDHAEVYSGGLKYDANNIYLAAQYSQTYNATRFGTSNGDRSDIYGFADKAQNFEVVAQYQFDFGLRPSVAYLQSRGKDIANKTTGESFGDQDLLKYVDVGATYYFNKNMSTFVDYKINLLDDNKFTRQAGIGTDDVVAVGLVYQF
>NC_017933.1|WP_014728412.1|1316785_1317817_+|FAD:protein-FMN-transferase-ApbE
MKLLALRTLLLTAALIIAGCDNAPQALVLEGKTMGTSWRVSLADVDTARASELREKIQARLDADDRLLSTWKDDSALMRFNHARTTAPWPVDEAMADIVTESLRVGAKTDNAMDITVGPLVNLWGFGPDKQPVKTPDQAQIDAARARTGLSHLRVINGAGQQWLQKDLPDLYVDLSTAGEGYAADHLARLMEEEGISRYLVSVGGALASRGMNPGGHPWRVAIQKPTDQENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPATGRPITHKLVSVTVISPTALEADAWDTGLMVLGPEKAKAVALREKLAVYLITREGDGFATWMSPQFAGFIDKTEN
>NC_017933.1|WP_014728413.1|1317889_1318954_+|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MNVADFTSEHARWQAVESRDARADNAFVFAVVTTGIFCRPSCRARRPLRENVRFYEDASAASAAGFRPCKRCQPAGLTPQAQKAQRIAAACRLMEQSDTPLTLAMLAESAAMSPYHFHREFKAITGMTPKAWQNALRAQKLQAALRGGMSVTDSLWEAGFSSGSALYRDADRALGMRPRQYRRGGEQTAIRYAIAPCEAGLCLVATSDRGLCAVLLADDAAALEAELATIFPHAERLAPDDTFRAQVAQVIAWLDAPQGELALPLDLRGTAFQLRVWQALQSVPPGSTISYQALAERTGNPQAVRAVASACAANKLAIVVPCHRVVRRDGALSGYRWGADRKARLLAREREQEK
>NC_017933.1|WP_014728414.1|1318953_1319598_+|DNA-oxidative-demethylase-AlkB
MLDLFADADPWQEPLADGAVVLRRFALASAPALMAGIEAVAARSPFRHMVTPGGYTMSVAMTNCGEVGWSTNQKGYLYAQVDPQTGTPWPAMPDAFRTLCDAAASAAGYLDFTPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAVFQFGGLKRNDPLKRLLLEHGDVVVWGGPSRLFYHGIQPLKPGQHPATGEYRYNLTFRQARG

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Crispr_ID: NC_017933_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_7

1467008-1467086

Orphan

Consensus_repeat	Method
TGCGCTGCGCTTACCCACCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_7

>merge|NC_017933|7|1467008-1467086|CRISPRCasFinder
TGCGCTGCGCTTACCCACCCTACAGTTGGCTGGCGTTACGTTATGCTTCGGTGGATGCGCTGCGCTTACCCACCCTACA

>NC_017933|7|7|1467008-1467086|CRISPRCasFinder
TGCGCTGCGCTTACCCACCCTACA	GTTGGCTGGCGTTACGTTATGCTTCGGTGGA
TGCGCTGCGCTTACCCACCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014728517.1\|1462856_1463429_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728522.1\|1473753_1476843_-\|multidrug-efflux-RND-transporter-permease-subunit-MdtC	unknown	unknown	gnl\|CDD\|182589
NC_017933.1\|WP_014728514.1\|1459074_1459662_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728523.1\|1476843_1479966_-\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NC_017933.1\|WP_014728516.1\|1462398_1462716_+\|DUF1493-family-protein	unknown	unknown	gnl\|CDD\|369336
NC_017933.1\|WP_007902990.1\|1470913_1472338_-\|two-component-system-sensor-histidine-kinase-BaeS	unknown	unknown	gnl\|CDD\|182539
NC_017933.1\|WP_004388208.1\|1481443_1481806_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227028
NC_017933.1\|WP_014728521.1\|1472334_1473750_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182502
NC_017933.1\|WP_004388202.1\|1470194_1470917_-\|two-component-system-response-regulator-BaeR	unknown	unknown	gnl\|CDD\|182665
NC_017933.1\|WP_014728519.1\|1464652_1465453_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NC_017933.1\|WP_014728515.1\|1459756_1461481_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_017933.1\|WP_014728520.1\|1468319_1469681_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NC_017933.1\|WP_014728518.1\|1463868_1464666_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NC_017933.1\|WP_007851202.1\|1458089_1459067_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_004388209.1\|1481792_1482089_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_017933.1\|WP_007851199.1\|1461840_1462167_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|227742
NC_017933.1\|WP_007869261.1\|1467169_1468069_-\|lipid-kinase-YegS	unknown	unknown	gnl\|CDD\|237281
NC_017933.1\|WP_014728513.1\|1456326_1457871_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NC_017933.1\|WP_004386507.1\|1465600_1466653_+\|class-I-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236431
NC_017933.1\|WP_004388207.1\|1479965_1481213_-\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014728523.1\|1476843_1479966_-\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NC_017933.1\|WP_014728522.1\|1473753_1476843_-\|multidrug-efflux-RND-transporter-permease-subunit-MdtC	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NC_017933.1\|WP_004388207.1\|1479965_1481213_-\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	0
NC_017933.1\|WP_014728516.1\|1462398_1462716_+\|DUF1493-family-protein	gnl\|CDD\|369336	pfam07377, DUF1493, Protein of unknown function (DUF1493). This family consists of several bacterial proteins of around 115 residues in length. Members of this family seem to be found exclusively in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.	5.33203e-10
NC_017933.1\|WP_007902990.1\|1470913_1472338_-\|two-component-system-sensor-histidine-kinase-BaeS	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	0
NC_017933.1\|WP_014728521.1\|1472334_1473750_-\|MFS-transporter	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	0
NC_017933.1\|WP_004388202.1\|1470194_1470917_-\|two-component-system-response-regulator-BaeR	gnl\|CDD\|182665	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional.	1.14541e-176
NC_017933.1\|WP_014728519.1\|1464652_1465453_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	2.09988e-156
NC_017933.1\|WP_014728515.1\|1459756_1461481_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.79056e-118
NC_017933.1\|WP_014728520.1\|1468319_1469681_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NC_017933.1\|WP_014728518.1\|1463868_1464666_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	8.6643e-118
NC_017933.1\|WP_004388209.1\|1481792_1482089_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	6.12e-08
NC_017933.1\|WP_007851199.1\|1461840_1462167_-\|RcnB-family-protein	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	6.24955e-19
NC_017933.1\|WP_007869261.1\|1467169_1468069_-\|lipid-kinase-YegS	gnl\|CDD\|237281	PRK13054, PRK13054, lipid kinase; Reviewed.	0
NC_017933.1\|WP_014728513.1\|1456326_1457871_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.00776e-117
NC_017933.1\|WP_004386507.1\|1465600_1466653_+\|class-I-fructose-bisphosphate-aldolase	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	0
NC_017933.1\|WP_004388208.1\|1481443_1481806_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	1.10703e-34

>NC_017933.1|WP_004386507.1|1465600_1466653_+|class-I-fructose-bisphosphate-aldolase
MTDIAQLLGNDADSLLQHRCTTISSDQLYLPGPDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPMYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTQYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSHFKKDGVDYHSSADLTGQANHLAATIGADIVKQKMAENNGGYTALKFGYTDERVYSKLTSDNPIDLVRYQLANCYMGRAGLINSGGASGGEADLTDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDKKVTIA
>NC_017933.1|WP_014728519.1|1464652_1465453_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGTSVITALVAQNTRGVQSVYRIEPSFVAAQLDSVLSDVRIDTTKIGMLAETDIVEAVAERLSRYRVRNIVLDTVMLAKSGDPLLSPSAVRTLREKLLPQVAIITPNLPEAAALLETTHARSEAEMGQQGEALLALGCGAVLMKGGHLDDVESPDWLFTREGATRFTAPRVMTKNTHGTGCTLSSALAALRPQYADWVETVTAAKAWLTKALQQADSLEVGEGIGPVHHFHAWW
>NC_017933.1|WP_014728518.1|1463868_1464666_+|hydroxyethylthiazole-kinase
MSSDLLCGSHAAPVVTQLRRHAPLVHCITNDVVQNFTANVLLALGASPAMVVDTDEAMQFAAIADALLINLGTLTRPQQQAMRVAIDSACAAGKPWTLDPVAVGALTLRTEFAQEILARRPAAIRANASEIRALAGESGGGRGVDATESAHHAREAARLLARRSGAVVAVTGEVDYITDGERTVAVEGGTAMLTRVVGTGCALSAVVAACCALPGDRLENVATACWLMKRAGEQALTVSRGPGSFASALLDNLHAQAFGGAYETH
>NC_017933.1|WP_014728517.1|1462856_1463429_+|hypothetical-protein
MKYSFVFLWLVAGTCAAAQMTGFGARYYDDITEVYSDNHETDKDLVPVIAIGTTEYKFEVNTLASIAKNAGVKVNKDNLASWICLKSGGINYWFISDNEMGAGDLTAVAIAKDGSPCTPYKGVFDVSVKAPVLTTKEETEKYFNHKPNKDIVMYYKDVEKSGEYTQSNSIMYYLKDDKVLGVIISQGTTN
>NC_017933.1|WP_014728516.1|1462398_1462716_+|DUF1493-family-protein
MMSTEDGVRALIKKHFWEMADEDSLSTGQYCVLPEDAQAFFGEYFAVFNLNYSSFDFRKYFPQEGIFFLPNAILPDYLKSDKHQPSPLTVQMLIASAKAGRWIDD
>NC_017933.1|WP_007851199.1|1461840_1462167_-|RcnB-family-protein
MLKTRMIVAGVLLMSVASAFAADVVKPKSIDSYEVKEFHSDSKKYTIGDIVPDLYRTEQYNIKQWQIRNLPAPEAGTHWTYMGGYYVLITDAEGKVVRAMNGDIFYHR
>NC_017933.1|WP_014728515.1|1459756_1461481_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSTLLTAHSLRIDSPFGPVLNTLSFTLKKGDRIGLIGHNGCGKSTLLKALDGTLAPAEGVVTRAARCLLARVEQHLPDELHQQTLLDALLARLPEAERESSAWRAQALLANMGFAEAAWSLTAGSLSGGQHTRLLLARALIISPDLLLLDEPGNHLDLPTMLWLEQFLARWNGSFILVSHDSALLDSVTNRTWILRDGQLQAFDLPCTQARAALAARDESDALRHKAEQKEIDRVTASAKRLATWGQVYDNEDLARKAKQMEKQVARLKEEQTELAQGSRWRLTLSGDALAADRLLELENLAVSAAPDTPTLFTLPLARLKSGDRVALLGHNGCGKSSLLRLLWRQWQTGETVPGVTFHPRVSLGYYDQSLHQLPDNATLLEALEPFAPELQQRKLALISAGFPWARHGQRVDTLSGGERSRLLFVGLSLARYSLLMLDEPTNHLDMEGKEALAQTLQTFEGGLLLVTHDRTLMEASCNRFWLVEDGGLSEWHNMEALLARLRAAPTQEAENEAPAALATPPDEHSDARLLERLIELETRLNADLERKPRHQKPSLQAEWRKEIAHLSAALGLE
>NC_017933.1|WP_014728514.1|1459074_1459662_+|hypothetical-protein
MINYLKRSLQLGRLVEHGLQNKRPEALEQLKTQLKEQVRLPTGWRSLGMPLVLAMVMAVLSFAIPQISFWVAISQSLGLAESAFFIGMLVSNFLFCVLIIPAMTGVARGYLRALQLWLALVAIAVFVSALFFMSVLVSLLSSEGVVRWDIIGALLGIMFSVFSVRCINSRLFMETVALGFYNRILREQAKYHAYP
>NC_017933.1|WP_007851202.1|1458089_1459067_+|hypothetical-protein
MSDYLSGMNAPNNLPSFDKPVTWGGPGTVDFNFHALAKELDRTRDFNRVGIIYSNGVNDWLVRPSRRIATPNETNVSHVIITKVNDTSLQNAGKAITKPLQAPSLTTEITSTAISCGALVATALIAVSATLVIPFTAGATGILAGIMTAGTVATGFQCAVGVGRLFAIGYGYEENVAWFDSQDWYTSTMTALDVISLAGASVGLRSTIKAYMAMKAGSSAKALDWLRTLSRHERKRITIEIIRNRNPGISNDGIKALIKAGAYPSRFPTEALQKSLQYELIKAFNNASAFAGSAVSGTIRNPQNLQNTGKFVVGIIQSVSLAGSR
>NC_017933.1|WP_014728513.1|1456326_1457871_+|Tar-ligand-binding-domain-containing-protein
MGLLKDFSIRAVMLTVLGVLCVLWAAVGVYSVYSLSAMADGNRVDRQLVSQMTVLSKGNDQYFRFVTRLTRAMENGTPDAKSLESAQQALDTMSRQLNAFKQLSPGPLDPAVSQQVIADWQKLLDDGVIPQMKLAREGTPDAYRAHAGKVTPVFSRAFGASAEKFNAAAGAKLDATRERVDSMTVTTKTVIIIAVIIGLLLLLLTDRYLVAMLVKPLEKIRNHFTLIAGGDLSQPVEPFGRNCVGKLVPLLTAMQDQLREAVSAIRHGSENIWRGASEISAGNNDLSSRTEEQAAALEQTAASMEELTSTVRLNAENARQASELAHAASENAGKGGQLAQNVIETMQGISGSSKKIADITSVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAEAAREIETLITESVERIEKGSELVNAAGDSMAEIYRGVSNVSTIIKQIASASEEQSKGISQVGVAITQMDTVTQQNASLVEQVSAAAAALERQTEELQSTVQKFRLSA
>NC_017933.1|WP_007869261.1|1467169_1468069_-|lipid-kinase-YegS
MSRSPGSFLILNGKSADNEILRGSVKLLRDQGHPIEVRVTWEKGDAARYVSEAADQGAQTVIAAGGDGTINEVAAALACVTQEKRPALGLLPLGTANDFATSAAVPDDIELALKLAIEGRAVPIDIAHVNDKTWFINMATGGFGTRITTETPERLKAALGGVSYLIHGLMRMDALKADRCEIRGEHFHWQGDALVIGIGNGRQAGGGQELCPEALINDGLLHLRIFTGEELLPALFTTLTQPEESPNIIDGASPWFEITAPHEITFNLDGEPLSGQHFRIVVEPGALQCRLPPDCPLLK
>NC_017933.1|WP_014728520.1|1468319_1469681_-|tRNA-5-hydroxyuridine-modification-protein-YegQ
MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIMLVREHFPQMDIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIAEIREQVPEMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKVQEGKEDSIGNIVHIHEPIPVQTVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIQHVERLTKMGVHSLKIEGRTKSFYYCARTAQVYRRAIDDAAAGKPFDPSLLETLEGLAHRGYTEGFLRRHTHDDYQNYDYGYSVSDRQQFVGEFTGERNGALAAVAVKNKFSLGDSLELMTPQGNVSFTLEHMENAKGEKMDVAPGDGYTIWMPVPEDLALEYALLMRNFSGQTTRNPHGK
>NC_017933.1|WP_004388202.1|1470194_1470917_-|two-component-system-response-regulator-BaeR
MTELPINDKTPRILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKPQRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWEADAGRVV
>NC_017933.1|WP_007902990.1|1470913_1472338_-|two-component-system-sensor-histidine-kinase-BaeS
MRFWRPGITGKLFLAIFATCILLLITMHWAVRFSFERGFIDYIKHGNEQRLALLSDALSEQYQQHGDWGFLRHNDRMIFQILRSFERENAHDGPPPPDRGPPPHMPPHGWRTQFWVVDAEQNVLVGPRSPVPQDGARRAIVVDGKRVGWVIASPVERLTRSTDINFDKQQRRTSWLIVALSTLLAAAATLLLARGLLAPVKRLVEGTHRLAAGDFTTRVVATGQDELGRLAQDFNQLASTLEKNQQMRQAFMADISHELRTPLAVLRGELEAIQDGVRQFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYQKKPLEIVTLIEVAAGAFRERFAARGLTLNLSMPENVTLFGDRDRLMQLFNNLLENSLRYTDAGGGLLIQGERQAQRFVLRFIDSAPGVSDEQLSKLFERFYRAEGSRNRASGGSGLGLAICANIVAAHGGTINADHSSSGGVSITVSLPLDAVLPGDV
>NC_017933.1|WP_014728521.1|1472334_1473750_-|MFS-transporter
MTDLPQNVRWQLWIVAFGFFMQALDTTIVNTALPSMAASLGESPLRMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAQSSTLNELVAARVLQGIGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINLPVGIAGAAATLWLMPNYTMQTRRFDFSGFLLLAFGMAALTIALDGYRSTGLSPAGLGALVAGGSAATLLYLWHARGNERALFSLRLLHTRTFSLGLFGSLCGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMMPMVLGSMGIKRIVVQVVNRFGYRRVLVASTLALALVTLLFMGVALAGWYWLLPVVMLFQGMVNSVRFSTMNTLTLRDLPDEMASSGNSLLSMVMQLSMSLGVSIAGLLLGAFGHNQLAADSGDAHGIFFWTYLCMALIIALPALVFARVPDDISKNAVIARRKRSAS
>NC_017933.1|WP_014728522.1|1473753_1476843_-|multidrug-efflux-RND-transporter-permease-subunit-MdtC
MKFYALFIYRPVATILLSIAVTLCGVLGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSTSSLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTFSQGELYDYASTQLAQTIAQIDGVGDVDVGGSSLPAVRVALNPQALFNQGVSLDTVRSAISNANVRRPQGAIEDAQRRWQLQTNDELKTAAEYEPLIVHYNNGAAVHLRDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIETVDRIRAALPELRDTIPAAIDMQIAQDRSPTIRASLAEVEQSLAISVGLVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFQEFAITLSVAIGISLVVSLTLTPMMCGWLLKAKPREETRSRVGVNRLLLALQGGYARSLGWVLNHARLVGLVLLATIALNIWLYISIPKTFFPEQDTGRLMGGIQADQSISFQAMRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFISLKPLGERTESAQQVIDRLRKKLAREPGASLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRQALAKLPQLADVNSDQQDNGAEMSLVYDRELMARLGISVQDANSLLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALDQMFVMNSEGKPIPLSWFAKWQPANAPLSVNHQGLSAASTIAFNLPTGVSLSEASDAITRTMTSLGVPSSVRGSFAGTAQVFQETMNSQVILILAAIATVYIVLGMLYESYVHPLTILSTLPSAGVGALLALEAFDAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGQLSAHDAIFQACLLRFRPIMMTTLAALFGALPLMIASGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFTRRAKPEDTLTASE
>NC_017933.1|WP_014728523.1|1476843_1479966_-|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit
MQVLPPSATGGPSRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMASQSAGGASVVTLQFQLTLPLDVAEQEVQAAINAATNLLPDDLPNPPVYSKVNPADPPIMTLAVTSSALPMTQVEDMVETRVAQRISQVTGVGLVTLSGGQRPAVRVKLNAQALASLGIDSETVRTAITSANVNSAKGSFDGPERAVTLSANDQMKSADEYRNLIIAYKNGAPVRLGDVATVEQGAENAWLGAWANKQPAIVMNVQRQPGANIITTAETIQKLLPQLTESLPKSVQVKVLTDRTTNISASVNDTQFELMLAIALVVMIIYLFLRNIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERVINRVIARYGQLLKRVLNHPWLTLGVALGTLALTVLLWIVIPKGFFPVQDNGIIQGTLQAPQSVSFASMAERQRAVADVILKDPAVESLTSFVGVDGTNPSLNSARLQINLKPLDDRDDRVQTVIARLQEAASRVPGATLYLQPIQDLTIDTQVSRTQYQFTLQANSLEALSTWVPKLIARLQTLPQLADVSSDWQDNGLVAYVNVDRASASRLGISMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTTATPGLAALDSIRLASSDGGMVPLSAIAKVEQRFGPLTINHLDQFPSTTISFNVPDGYSLGDAVDAITQAEADLAFLAEITTQFQGSTLAFQAALGSTLWLILASVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALLIAGAELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMTPREAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDRLGHAVRRRLPAREEEA
>NC_017933.1|WP_004388207.1|1479965_1481213_-|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit
MKSTVKKRGWVIAGIVVVAIAALLYWRNAATDAPSGKTTHAGGRAAMRMGGAQAPVQAATARSEAVPRYLTGLGTITAANTVTVRSRVDGQLMAIHFKEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDRATLANARRDLARYQQLGKTNLVSRQELDAQQALVSETEGTLKADEAAVASAQLQLDWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVLTQTHPIDLVFTLPESDIAAVMQAQKAGKALTVEAWDRTNSTKLSTGELLSLDNQIDATTGTIKLKARFANEDDALFPNQFVNARMLIDTQQNAVVIPTAALQMGNEGHFVWVLNDDNKVSKHTVTTGIQNSETVVITAGLSAGDRVVTDGIDRLTEGAKVDVVEAQTATDNAKPERGERSPTDSARAAKGARS
>NC_017933.1|WP_004388208.1|1481443_1481806_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAWTVIFTDRFNDWYQQQPEGLQDRIAALLWNLRYSGPLVGRPLVDTVKGSRYPNLKELRVQYGGEPWRVFFAFDAERQAVVLCAGNKRSQKHFYDALIRQAEEEFFLHVQAMERRNENS
>NC_017933.1|WP_004388209.1|1481792_1482089_+|helix-turn-helix-transcriptional-regulator
MKTLDDVMAGFSPERQAEILRMADEIALEHGLPRIREARAFSQQQLAEIMGVTQPAIAAIEQRGKEIKLLTLKRYVEALGGKLSLLIELPEGSKVIPV

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Crispr_ID: NC_017933_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_8

1544345-1544488

Orphan

Consensus_repeat	Method
GGCGGGTAAGCGAAGCGCACCCGCCATAT	CRISPRCasFinder

2 spacers

DEDDh

The CRISPR arrays of NC_017933_8

>merge|NC_017933|8|1544345-1544488|CRISPRCasFinder
GGCGGGTGCGCTTCGCTTACCCGCCCTACGAGTGAGCGTTTCTGTTGGGAATATGTAGGGCGGGTAAGCGAAGCGCACCCGCCATATTAAAACCAACTCCATTTCCCGTTAGTAAGGCGGGTAAGCGAAGCGCACCCGCCATAT

>NC_017933|8|8|1544345-1544488|CRISPRCasFinder
GGCGGGTGCGCTTCGCTTACCCGCCCTAC	GAGTGAGCGTTTCTGTTGGGAATATGTAG
GGCGGGTAAGCGAAGCGCACCCGCCATAT	TAAAACCAACTCCATTTCCCGTTAGTAA
GGCGGGTAAGCGAAGCGCACCCGCCATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014728554.1\|1536931_1538236_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_017933.1\|WP_004388509.1\|1534788_1535856_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|235471
NC_017933.1\|WP_097566144.1\|1542803_1542866_+\|membrane-protein-YoeI	unknown	unknown	unknown
NC_017933.1\|WP_004385327.1\|1550568_1550907_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NC_017933.1\|WP_014728563.1\|1555657_1556959_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NC_017933.1\|WP_041460934.1\|1544513_1545941_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_017933.1\|WP_007794764.1\|1542855_1544217_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_017933.1\|WP_014728557.1\|1541371_1542667_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NC_017933.1\|WP_014728559.1\|1546018_1547170_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017933.1\|WP_004385872.1\|1538241_1539141_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_017933.1\|WP_014728556.1\|1540325_1541105_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|183101
NC_017933.1\|WP_014728562.1\|1553135_1555658_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|273730
NC_017933.1\|WP_071601073.1\|1539286_1539337_-\|his-operon-leader-peptide	unknown	unknown	unknown
NC_017933.1\|WP_139156523.1\|1547407_1548580_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	unknown	unknown	gnl\|CDD\|183117
NC_017933.1\|WP_041460461.1\|1549341_1550400_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NC_017933.1\|WP_014728553.1\|1535852_1536935_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NC_017933.1\|WP_014728561.1\|1551287_1552760_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|182293
NC_017933.1\|WP_014728564.1\|1556970_1558194_+\|DUF3396-domain-containing-protein	unknown	unknown	gnl\|CDD\|371775
NC_017933.1\|WP_004385325.1\|1548667_1549141_+\|DNA-gyrase-inhibitor-SbmC	unknown	unknown	gnl\|CDD\|182195
NC_017933.1\|WP_014728555.1\|1539517_1540342_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014728554.1\|1536931_1538236_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_017933.1\|WP_041460461.1\|1549341_1550400_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	4.55424e-39
NC_017933.1\|WP_004385327.1\|1550568_1550907_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	2.72201e-58
NC_017933.1\|WP_014728563.1\|1555657_1556959_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	1.50229e-09
NC_017933.1\|WP_041460934.1\|1544513_1545941_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_017933.1\|WP_007794764.1\|1542855_1544217_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.31158e-44
NC_017933.1\|WP_014728557.1\|1541371_1542667_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NC_017933.1\|WP_014728559.1\|1546018_1547170_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.6097e-27
NC_017933.1\|WP_004385872.1\|1538241_1539141_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.41334e-160
NC_017933.1\|WP_014728556.1\|1540325_1541105_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|183101	PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional.	6.52564e-73
NC_017933.1\|WP_014728562.1\|1553135_1555658_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	1.01799e-76
NC_017933.1\|WP_004388509.1\|1534788_1535856_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|235471	PRK05446, PRK05446, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB.	0
NC_017933.1\|WP_139156523.1\|1547407_1548580_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	gnl\|CDD\|183117	PRK11397, dacD, serine-type D-Ala-D-Ala carboxypeptidase DacD.	0
NC_017933.1\|WP_014728553.1\|1535852_1536935_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NC_017933.1\|WP_014728561.1\|1551287_1552760_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	gnl\|CDD\|182293	PRK10189, PRK10189, EmmdR/YeeO family multidrug/toxin efflux MATE transporter.	0
NC_017933.1\|WP_014728564.1\|1556970_1558194_+\|DUF3396-domain-containing-protein	gnl\|CDD\|371775	pfam11876, DUF3396, Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.	7.93491e-85
NC_017933.1\|WP_004385325.1\|1548667_1549141_+\|DNA-gyrase-inhibitor-SbmC	gnl\|CDD\|182195	PRK10016, PRK10016, DNA gyrase inhibitor SbmC.	1.67063e-100
NC_017933.1\|WP_014728555.1\|1539517_1540342_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.41194e-76

>NC_017933.1|WP_007794764.1|1542855_1544217_+|APC-family-permease
MSLNATPKTSRVELRKTLTLIPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALVAILFTALSYGKLVKRFPSAGSAYTYAQKAINPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPEIPSWIFVVLLVAFMTVFNMRTLKGVANFNTIIVVLQVVLIAVILGMVIYGVAHGEGAGTLTSSRPFWSENAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFIQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTVTVLASGMAAHAGVARLMYVMGRDGVFPNRFFGYVHPKWRTPALNVVLVGAIALMAINFDLVMATALINFGALVAFTFVNLSVISQFWIREGRNKTLKDHFTYLLLPVCGALTVGALWLNLEESSMVLGLIWAGIGVVYLACVTRSFRNPVPQYREDIA
>NC_017933.1|WP_097566144.1|1542803_1542866_+|membrane-protein-YoeI
MGQFFAYAAMFTVKENNYVA
>NC_017933.1|WP_014728557.1|1541371_1542667_+|4-aminobutyrate--2-oxoglutarate-transaminase
MQSNQQWQARREEAVPQGVGNALPVFVARAKNAEIWDVEGKRYIDFASGIAVLNTGHNHPAVIEAVKAQLDNFTHPCFQVTPYGNYIELAERLNRLAPISEPCQTLFLSTGAEAVENAIKVARIATGRSAVIAFRGAFHGRTLLGMALTGKVQPYKKGYGPFPAGIYHAPYPAAYLGVSDTQALASLAGIFAADVAPEEVAAIIIEPVQGEGGFYAASAEFMQQLRALCDKHGIVLIVDEIQSGFCRTGKTFAIEHSGVEPDLITMAKSLAGGFPLSALVGKKALFDKALPGGLGGTYAGSPVSIAAALAVIDLIEQEQLNARAIAQGELLMSGLRELAQEYDCIGDVRGVGAMVAMELVHERDSHRPDKELTQQLVQEAGRQGLILLTCGVRANVIRFLIPLTAEKEIVTEGLNVLSSCLKVVQNTRPAK
>NC_017933.1|WP_014728556.1|1540325_1541105_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MTVNTPPLIGVLMCQSNQDEQLILTVENLYLAPLYHSGAVAIPLPHHLADDPLYLAAALKSLSEIFLPGSPCNIEPHHYGEEAQETSNDPGRDKLALMLVRHALNTGLPLLGSCRGVHEMVVATGGKLWRQLHNVEGLREHEVNPNGSPEAKFAPVHGLEITPGGWLDSWVAPGETVRVNTLHQQGIREVGPGVFIEARADDGLIEAISIPEHPFAFGVQWHPEWGALHDEPLSKQIFDAFVAACRVWQADHQALTPLA
>NC_017933.1|WP_014728555.1|1539517_1540342_+|SDR-family-oxidoreductase
MKKVAIVGLGWLGMPLALALNARGWQVAGSKTTADGVEAARMCGIESYQLELLPEMVCDSDDLEALFNADALVVTLPARRTGGNGEYYLQAVQQVVDSALAHQIPRIIFTSSTSVYGEAEGICKETTPANPVTESGRVLRELEQWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTGPNGGHGVNLVHLEDVIGAITLLLQSPKGGHIYNLCAPQHPTRAEFYPVMARQLGLEPPRFSESPAGTKGKLIDGNRICHELGFEYLYLDPLVMPME
>NC_017933.1|WP_071601073.1|1539286_1539337_-|his-operon-leader-peptide
MTRVQFNNHHHHHHPD
>NC_017933.1|WP_004385872.1|1538241_1539141_-|ATP-phosphoribosyltransferase
MTDNNRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIALAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLTRRAQGDDPRYYTLRRLDFGGCRLSLATPVDDVWEGPESLNNKRIATSYPHLLKRYLDQKGVQFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMPAVKQQLIDKLLTRIQGVIQARESKYIMLHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_017933.1|WP_014728554.1|1536931_1538236_-|histidinol-dehydrogenase
MTFTTIVDWNACSAQQQRELLMRPAISASESITRTVAEILDNVKARGDAALREYSAKFDKTDVAALKVTAEAIDAAAARLDDNVKQAMAVAVANIEKFHRAQQLAPVDIETLPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKRVVLCSPPPIADEILYAAKLCGVQEVYQAGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAAMAQAVADATARQLEALPRAQTARQALSASRIIVARDLAQCVAISNQYGPEHLIIQTRNARELVDDITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATSSSLGLADFQKRMTVQELTPAGFSALAETIETLAAAEQLTAHKNAVTLRVSALKEQA
>NC_017933.1|WP_014728553.1|1535852_1536935_-|histidinol-phosphate-transaminase
MSIEELARENVRTLTPYQSARRLGGNGDVWLNANEYPLPVEFQLTAQTLNRYPECQPKLVIERYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGRDAVLYCPPTYGMYSVSAETSGVECRTVQATDGWQLDLPAIAEQLDGVKVIFVCSPNNPTGQLINPQDLRTLLEMARGKAIVVADEAYIEFCPQATLAGWIGEYPHLVVLRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPEGIAAMRERVAQVLANRDALIAGLRETPCVEAVFDSETNYVLARITASSAVFKSLWDQGIILRDQNRQPTLSGCLRITVGTREECQRVIDALRDQPGLAATERV
>NC_017933.1|WP_004388509.1|1534788_1535856_-|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB
MSQKYLFIDRDGTLIAEPPEDFQVDRFDKLAFEPDAVPVLLQLQKAGFKLVMITNQDGLGTASLPQADFDGPHNLMMQIFTSQGVLFEDVLICPHFPTDNCDCRKPKTKLVERYLEPGVMDAANSYVIGDRATDVELAENMGITGLRYNRADLNWAAIGEHLTKRDRYAHVERSTRETQIDVKVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEIGVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFVLPMDECLARCALDISGRPHLEYKAEFNYQRVGDLSTEMVEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGETLPSSKGVL
>NC_017933.1|WP_041460934.1|1544513_1545941_-|exodeoxyribonuclease-I
MSDSAAQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVARARGENEAEFAKRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYNPYAWSWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCPVLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARWLAHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIVG
>NC_017933.1|WP_014728559.1|1546018_1547170_-|acyltransferase
MAQGKSWSPELEGLRGLASLWVLLGHICLLVQCRIPLLYDPGMGVDLFILLSGFLMAKNYMERRDIEPWTSGHTMRNFWLRRFFRIAPLYYFLLLLALIFGAAFGEWRDLIAQAWPSTQTESQRYADTSAGNILAHISFVFGAIPYYSFRTVLPDWSIGLEMQFYVLFPFIMLLVMRWGFFAAAFAVMVACFAARWAFPGYFEAFPMPSMILIKLPLFVAGMLIAAAVRESRRLLLLLAFLAPVLAWQMHIAVTPVRLIAQCVMIAGLGALLWQAQAGSLLHQAMRLPRWLLTRRISQFLGDVSYSVYLLHLMIVIPVIGLLVEHSAFEQYASPVRLLIAAAISLPVTYALATVLFHRVEKPGIALGKRLITRKPVQPEQVMP
>NC_017933.1|WP_139156523.1|1547407_1548580_+|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD
MLLKFRPMIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKNEQVAVGTDRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANERVGEIELYNGDTIIARMPLVALEKVKKGGVFSRFGDWLHLTL
>NC_017933.1|WP_004385325.1|1548667_1549141_+|DNA-gyrase-inhibitor-SbmC
MDYTIEHVLTRKIAGFHLVGPWEKTVPQGFEQLSLWVDNFHIQPQAWLAVYYDNPQQVAPEKLRADTVVEVPADFTLPENSVGVILTDLPGGQYAVARARVENNDFGTPWLAFFTRLHQDVRYQMAARPCFEIYLNDGKRDGYWDIDMYIPVQTSGE
>NC_017933.1|WP_041460461.1|1549341_1550400_+|FUSC-family-protein
MRADKSLSSFEIRLYQHYRIVHGVRIALAFILTFLLVRMLNVPEGTWPLITLVVVMGPISFWGNVVPRAFERIGGTILGAALGLVALQLEGWSLPLMLLWCALAMFLCGFLALGKRPYQALLIGITLSVVVGAPQGDMLVALWRGGDVIFGSLLAMLFTSLWPQRAFIHWRIQMANFVGDFAKIYHAGLSPNLVERPRLDKPLQNILGSVVKLRAFITPASKETHIQRAIFEAIQTTSRNMVCTLEMQNNAWWASRESHFLMINARTLRDSQQMTENTLAAIAQALREGNPSPVMANREKLAEIAQELRALMSEGQQGALVETPIHGYVWLSMELAQQLERLSQLICRALRK
>NC_017933.1|WP_004385327.1|1550568_1550907_+|DUF496-family-protein
MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPKGEE
>NC_017933.1|WP_014728561.1|1551287_1552760_+|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter
MSVTTTVRQAIARTPWYKKRKSYRVLFWREITPLAVPILLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVVLSFFAAVDLGTTVVVAFSLGKRDRKRARAAARQSLVLMTIVSILLAALVHVTGEYIIDVVAGEATPQVKELALIYLQLTAWSYPAAAIALIGSGALRGAGNTKIPLLINGGMNILNIVISGFLIYGLFSWHGLGFIGAGLGLTISRYVGAIAILYVLMIGFNPALRISLKSYFSPLKLNILWEVLGIGLPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITGKRLGKGQIGQAERELRHIFWLSTIMLTAIAWVSAPFAGLFASFYTHEDDVKEVVKVLLWLNAAFMPIWAASWVLPAGLKGARDARFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVGVWLGMFLDWAVRGVFFYWRMVSGKWLQKYPRPPKRPVVLDTPAPPGQPKAM
>NC_017933.1|WP_014728562.1|1553135_1555658_+|type-VI-secretion-system-tip-protein-VgrG
MTISDKGSSVSSRYTLEIAHSRVRPDVLNFHGREALSEPYQWRIEFTAPQSDLAPEDVLLKYATLKMLSGRVVYGVITRFEWLGTSADQTHYAVTLASRLALLSLTRRCAVYQSLSVPELLEQILRAHGLEGPDFDFRLERTYPQRELITQWRETDLAFIQRILSEVGIWFRTEMNAVTQLETLIVGDSQLNYVFGVSVPYREPSGLYDGAQDAVWDVRCWQNTVTGVVRTRDYNYRTADTPMDSAVMVRSEAITTGEHYRYGAPFLEAGDDATSEPETESGAFYARIHHERELNSATRLHLFSNVSHLTPGQVLETPESPVAALKEGMLITLATYRAARDTRLHVSLWGIPYSERVNYRPVEIIRPEIHGTLPARIESRQPHDTYAWLDDTGRYRVKLDFSREDAEPGYHYLWVRQAKPYAGDAFGWHTPLLDGTEVSIAYDDGNIDRPYIAHAFHDAEHADIVTRDNRSQNILRTAARNELQMEDLRGQEHVALTTPYGASSLNQGHITNEQSQQRGAGFELRTDEYGVIRVAKGLFVTAEGQTKAAGEVLEREVAQREIEICLNQIQQLADAAAQAQALEADIASQIAMFNARLKPLNQMVHFHGPQGTAFTSGEHLQMTASKNVVMNAGGSLSMGAMGNMTLNAGEKIGLFAHTGKLNVISGEGPVQFQAQNGTMSLSAQQKISLVSTSDMLFAGKKKVTLIGGGSYLKIEQGKIEYGTTATYLRKVERTMVGAPKNMPLKVQRVGTAYIYSAIYQLQDKHGNILINTPYRLTTPSGQTIAGYSDTEGRSVPVYTRQPEDVELHILHKTASPEESMWFVGETNVYQLETELRENPS
>NC_017933.1|WP_014728563.1|1555657_1556959_+|VRR-NUC-domain-containing-protein
MDMPVLPDTPTTAPETPTGEKNQPWDCTTTGVEMVEKQSRLPTNENRQYLHLKVEYAMRFPQLAAKICREGKTYPMSLKQLMMSGLIRADEIARNYYWYYKAEVPFDMRTTPPRPFLSSTLKQDDGARRRHTTNPFPVPGKGIYRRPDVIIVKDKQDRWPGLAGLDHDDPPGMHGDNLARLVEVKFPGDELKRGQYDEYMKIVGKDRNRMTILEIYDCRPQEQQWVDQVVNVTMKAWQTSGAKYWPLFLYPPIFMPRPPSTPVAARMEPWTYAGQAVASLSDGAIRGVAEGWSSLSKETQQLLNSTAGWLNDSGEWIYRQGSEVWIWASKTGKAVKSWSNVRIKAAWAEIQYATDMTLDLLKQVDWVQILTNVAKTVGVILVAVGVGALVVTLGIPEAIISAFLLIIRLAITAWETLVTILGGGAGAAALSAG
>NC_017933.1|WP_014728564.1|1556970_1558194_+|DUF3396-domain-containing-protein
MVLRDFELNYLEKWLPEASVKYKDGSPAVNLGLIITVFFKDGHTPDVRRRMVECVDRFYTEFKPYLKKTLPDKKWTAITEKNYARQKQTILDSTPEEIFDWTLSSANESYLAPDYDILIMGKRIFHKDTDRSVIKLTFPLSLLKEPDGKARYEGWLLWLCNSFAVESGYAGLSFILPYAFERMFPYEYALAQRFSGVMVDSLGTLEGGEAVEGLKGACWYTILGTPWLEKLGGAEQLTHRLAKTPEIRLLPYSNGVILKAGELPPPLGDMKTEGLSPLLIKVNQLIRPVRYDGHNGLHFFSGYENLQFEKASSMAWFARFDEASALLDKAEAETSRAPVRIQCWTDDIAPYAGQWAAIVNGRTEYIRTREGQKMPLYKDKYGKSHRACWTLLKRDDKGSVYALPEDD

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Crispr_ID: NC_017933_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_9

2128505-2128591

Orphan

Consensus_repeat	Method
ATGAAGCCAGTAGCGCGGGTAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_9

>merge|NC_017933|9|2128505-2128591|CRISPRCasFinder
ATGAAGCCAGTAGCGCGGGTAAGCGAAGCGCACCCGTGGTGGGCAATTAATTCAACGTGACAGATGAAGCCGGTAGCGCGGGTAAGC

>NC_017933|9|9|2128505-2128591|CRISPRCasFinder
ATGAAGCCAGTAGCGCGGGTAAGC	GAAGCGCACCCGTGGTGGGCAATTAATTCAACGTGACAG
ATGAAGCCGGTAGCGCGGGTAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_041460859.1\|2127552_2128470_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_017933.1\|WP_014728880.1\|2125422_2125941_+\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
NC_017933.1\|WP_014728875.1\|2121159_2122074_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_007900239.1\|2124713_2125403_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
NC_017933.1\|WP_014728876.1\|2122083_2123304_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_017933.1\|WP_007888713.1\|2133322_2134537_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225968
NC_017933.1\|WP_014728884.1\|2130355_2130925_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|236773
NC_017933.1\|WP_014728886.1\|2131414_2132716_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NC_017933.1\|WP_014728890.1\|2136626_2137544_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_007900259.1\|2125937_2126270_+\|DUF1493-family-protein	unknown	unknown	gnl\|CDD\|369336
NC_017933.1\|WP_014728889.1\|2135540_2136515_+\|UV-DNA-damage-repair-endonuclease-UvsE	unknown	unknown	gnl\|CDD\|235029
NC_017933.1\|WP_007867756.1\|2132728_2133154_-\|DUF2231-domain-containing-protein	unknown	unknown	gnl\|CDD\|226695
NC_017933.1\|WP_014728885.1\|2130962_2131322_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728881.1\|2126229_2127450_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NC_017933.1\|WP_014728877.1\|2123293_2123635_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_017933.1\|WP_014728883.1\|2128924_2129836_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017933.1\|WP_014728888.1\|2135057_2135393_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728878.1\|2123639_2124053_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NC_017933.1\|WP_014728887.1\|2134721_2134895_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014728879.1\|2124070_2124670_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_041460859.1\|2127552_2128470_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.75725e-50
NC_017933.1\|WP_014728880.1\|2125422_2125941_+\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	1.02543e-71
NC_017933.1\|WP_014728879.1\|2124070_2124670_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.47672e-11
NC_017933.1\|WP_007900239.1\|2124713_2125403_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	8.23997e-82
NC_017933.1\|WP_014728884.1\|2130355_2130925_+\|C40-family-peptidase	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	4.87299e-38
NC_017933.1\|WP_007888713.1\|2133322_2134537_-\|EAL-domain-containing-protein	gnl\|CDD\|225968	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms].	4.80129e-107
NC_017933.1\|WP_014728886.1\|2131414_2132716_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	5.01517e-104
NC_017933.1\|WP_007900259.1\|2125937_2126270_+\|DUF1493-family-protein	gnl\|CDD\|369336	pfam07377, DUF1493, Protein of unknown function (DUF1493). This family consists of several bacterial proteins of around 115 residues in length. Members of this family seem to be found exclusively in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.	9.51041e-49
NC_017933.1\|WP_007867756.1\|2132728_2133154_-\|DUF2231-domain-containing-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	2.1879e-10
NC_017933.1\|WP_014728881.1\|2126229_2127450_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.6747e-25
NC_017933.1\|WP_014728877.1\|2123293_2123635_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	5.0594e-24
NC_017933.1\|WP_014728883.1\|2128924_2129836_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.34996e-24
NC_017933.1\|WP_014728878.1\|2123639_2124053_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	1.15452e-26
NC_017933.1\|WP_014728889.1\|2135540_2136515_+\|UV-DNA-damage-repair-endonuclease-UvsE	gnl\|CDD\|235029	PRK02308, uvsE, putative UV damage endonuclease; Provisional.	1.0122e-67
NC_017933.1\|WP_014728876.1\|2122083_2123304_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	1.05388e-38

>NC_017933.1|WP_041460859.1|2127552_2128470_+|LysR-family-transcriptional-regulator
MRPALDFNSLKVFITVVEKESFVGASKALAMPTSNVSRCIAQLEEKLNLQLIERSTRHMKLTQAGHLLYSRAKPLLEALEQTETELTLRQMQLKGPLRICIPSESGPALLGSAIADFACQNPDLEISCITNLSGFESLRDDLDVAIIITRGQLDDSDYIARHLITIPCTIVAAPAIIARYGTPSDIRQFEALPCITTVTALKGAPWQFVNRKGEFETIKVKGHYRVNSGEMAGRAAVAGVGFAILSKQACQPYINDGRLIEVEFEQATAPLQLFAVYSNRRFLPAKTRAFIDFVHQRLSAMPSAT
>NC_017933.1|WP_014728881.1|2126229_2127450_-|MFS-transporter
MPVETQIVNYKSVMRIALVMAFIQFANALEYMAFTPIFTFMADGFAVPVSFSGYASGIYTSGAVISGVAAFYWVERFNKKRFIFRNMLLLGIFTCLCTVTTHFGTLLVIRFCAGLVGGTTMGVGMSILINSAPSQLRGKMLATVIASFSMVSIVGMPAVMFLCTHYGWQASLWLISALCLVCLPLIVFTLPRDAVSSGIKAKLFFDSQTLLFASSTALVQFSPMLIIPILTPLLIQFMGAQESLLPLLFLSGGIAGYASTKITGILISRISSLALSILSTLLFVVSLLIPAMGFNNVFLFITLFLGASYSRLVCASALAMHYPANEQRASFSSLQTAIMYLITTLAFFLSSLLLPEHVINPRNLNSLLVISALSAAGFPVLVVILQKKLAQRAVSHRASGQPGQIQ
>NC_017933.1|WP_007900259.1|2125937_2126270_+|DUF1493-family-protein
MNSDSLEAQVYAHVRKHDGFYLFGKPELTEQTDLDFDLQLDEDEALALMEDFFTTFSVARGNFSITTYYPPDPPLSVMLNPFRKREIPIVPFFTIGMLIESARAGRWLYD
>NC_017933.1|WP_014728880.1|2125422_2125941_+|GrpB-family-protein
MAGRQIVLEPYNPAWPAQFAEEEKRVREALGDVALAVHHIGSTSVPGLAAKPVIDMLIEVSGLSALDGCNAVMQALGYTPRGEYGIPGRRYFIKGHAVRTHHIHAFVAGSHHVTRHLAFRDYLRRHDDVMQEYAQTKFTAARDSGFQSDVYSELKNEFIARVEQQALARRQQ
>NC_017933.1|WP_007900239.1|2124713_2125403_+|B3/4-domain-containing-protein
MKPLTPSIAPEIARLAPGFRAISINVIAAPLADESVGRRALEAACRHVQENDFPWAQSHLAAWDAVFQAFGAKPKRTPCSAQALRKRVARDGAMASLDPVVDLYNAVSIKYAVPIGGENRAAYQGEPRLVIADGSEAFDTFKDGEPVNESPEPGEPVWRDDAGVTCRRWNWRQGVRTRLDSQAQEMWFILECLPAMPEEAADAAARELAEGLAAMMPGAQITTETVQPG
>NC_017933.1|WP_014728879.1|2124070_2124670_-|helix-turn-helix-transcriptional-regulator
MTHKVNIMTKPGSDVDSLSVALAQKLKAWRKEHKVTLDALSQRAGVSKGMLVELEKAAANPSIAILCKVAAALGLSVADLLDVASQPAARLIEATQIPVLWTGEYGGTARLLAGTSGPNMVELWRWELQPGDVFTSPGHPQGTSELLHVEQGTLTLGVSDEVLQVNAGASAVARTDAPHRYANEQQETLIFTMTVHEPH
>NC_017933.1|WP_014728878.1|2123639_2124053_+|ATP-binding-protein
MSATLTLPARLDALGPLADALAQFMAALPVDDGWRFEFDLAVCEAAANVIRHALEETPGRTFSVEFQHSETFAQAIFTDDGNAIPDGKLEAARDCAQDDEAALMSEGGRGLMLIVACVDDVDYQTGQTNRLTLCKRF
>NC_017933.1|WP_014728877.1|2123293_2123635_+|STAS-domain-containing-protein
MNLETEHLDGISVITPVARRLDASVAAAFRQGVSEEINRTTGGLIIDFSRVDFIDSSCLGTLIALFKQMNGKGEMALCSLNSNIMNMFKLTRMDRVFILCPDRAAALARLQKG
>NC_017933.1|WP_014728876.1|2122083_2123304_+|SpoIIE-family-protein-phosphatase
MPDRQRVLIVDDSTVYRRLLGSMLGKWGYEVLEAVNGVAALDVLATQPVNMVLSDWEMPVMDGLTLCQEIRARFQEHYIYLILLTARESVDDLALGFEAGADDFLSKPVNQSELRARLHAGERILELEATLAARNARLREALSQIESDLQAAAQLQRSVLPGRRMQYDNFFADWLFVPSAYVSGDIFNIFPLDRYLGFYCVDVAGHGVGAAMMSLAVARQFLHGRAVERFLFDGDGVTAPHEVIRILNERFCHDDTEIVSYFTMIYGVIDTETGEGKLCQAGHPTPFITHPGGSMTRIGSGGAPVGLLASLSWEDATFTLNRGDRLCLYSDGITECENPQQEQFGHERLEQWLQRHVSSPLDAIFPALHDKLVDWRARTQGDQVAMADDVSLLIIERSHEGVRDES
>NC_017933.1|WP_014728875.1|2121159_2122074_+|hypothetical-protein
MTRIYHCVGLAMLTLAGWPCLADSSPATTQSGASVDNESEPIQAGVFTSRWGRLFSGNDKKFSGALSFNSGLKEQYVTIPNSSDTATQTNKINQTVNLSLQYSPWSYLFANVTLRAPVRDLTRYSSDFRYSFGYDDWHANTFSLVYSNYGDNHIWPSGNKRHTYFEQGGVTAAYKFSLPKPLEKHLLINKGDSIICQVGYTWVPRYYDLNSNDIRSNKNVVLGGCGYTLKQHFFVRATAFWFPDSSQQQPWNGDYSYSFGYAGYTPGSFSIQYANYSGTRYPGHASGNGKFREGTVSLIWYLPL
>NC_017933.1|WP_014728883.1|2128924_2129836_-|alpha/beta-hydrolase
MPALINRIVISLLFMVMANATAAERHFTVTAPDGVPIAVQESGNPNGPAIIFIHGLLGSHLNWNRQIADPRLQRFRLITFDLRGHGLSGKPDTDAAYREGRRWGDDLAAVINKSQAKRPVLVGWSLGGAVISAYLAEYGDSRIGGALYVGGVVELTPALIPAHPAIYRDMTAADLQTHLDGERQFLRLCFYQQPDRDTFERLLANAAMASWTMQQNVPRIAVPAEKALNATRVPLPFIYGQHDALVNPDASLKRASAINPHIQSDIYANAGHAPFMEDAAQFNAQLAAFADNAVARVSRVHPR
>NC_017933.1|WP_014728884.1|2130355_2130925_+|C40-family-peptidase
MDFPAKPLFALLFCAYLTGCATKAPKPKAVAPLPDATASSRQPDLIPVIAALHDQMNTWQDTPYQWGGTKRDGIDCSGFVWRTLHDRFNLPMARVTTRELIHMGKGVDKNKLRPGDLVFFRIKGALHVGFYDSDGEFIHASTSKGVTRSSLDNPYWQTVYLEARRLPDNISSVVTLNHNTPPDLASNRG
>NC_017933.1|WP_014728885.1|2130962_2131322_-|hypothetical-protein
MPESTQRDGMPYFLFLCEGRVLAQNIDGRIIDLGEATQENGAFAWRLDGNDEHGEGLKNAGAVLDDIAGHLTFLFIDGQFTSLPDLSDDYAGKLDDAPAKEIVLSELSDKGGDDNPPVV
>NC_017933.1|WP_014728886.1|2131414_2132716_-|sorbosone-dehydrogenase-family-protein
MNNIHRLALAVSLGVLLSGCDNSATLDPQKQVGSNPELPEAKNFLLPPMQVPEGVAWKEGEKPKVAQGLKIEKIADGLMHPRQVYVLPNNDILVAESNGTPKPTTRPKQLIMGVVQKASGKGGPGGNRITLLRNVNGKWEKHNFIENLNAPFGIQLTGNTLWVANADSLVKFPYQEGQTAIRTPGEEVTELPGGPINHHWTKALLASPDGSKLYVGVGSNSNITENGIGAEYRRAAVLEVDAATGASRIYASGLRNPTGLQWEPESGKLWAIVNERDEIGSDLVPDYMTSVQEKGFYGWPYSYFGNHVDKRAEPQRPDLVAKAIKPDYALGSHVAPLGLHFYTGDNMPQYRGGAFVSEHGSWNRSPLNGYQVVWVKFENGKPVGMPQPVVTGFLTDDQKQVRGLPVGVTQDKSGALLIADDAGNAIWRVSAAQ
>NC_017933.1|WP_007867756.1|2132728_2133154_-|DUF2231-domain-containing-protein
MHPHTTARSPAAAVALYELLNPIPLGFFTAAWIFDILYMKSYVQMWTDAASWLIAIGLVIAIIPRLISLGQIWPGRRHLHGPAQRLHFWLNLLAIVLAIFNAFIHSRDAYAVVPAGVILSTLVVVLMLLANVQLALRQRAA
>NC_017933.1|WP_007888713.1|2133322_2134537_-|EAL-domain-containing-protein
MYSFIARQPIFDASLNTVAYELLYRDGLTNAFPPVTPEFATSQLLADHFLVTPLQRLSGKHTSFINFPYEMIVNGLAQSLPRQNVVIEILENSVPDNALFTTVRAMYEEGYCFALDDFTLESEWSRFLPYISVIKFDIQSTSVEQINAFLKAHPNLRCKLLAEKVERREELEQYQKLGFHLFQGYFYSKPELIKTKKLPEQKVFILELIREVNAARPDMAKIEKLISRDVAITYKLMRYVNNIKYQHNYHANAESLPFRSIFAFLGLYELKRFITILAVTHISDPSVSELYNVSLVYGRFCELAAHRIGGVSEDDAFIAGLFSRLDAIMDIPMDALLEQIYVSKEVKKALINREGVPGTLVRLCEAFERADWPQVVEVAQELNLSERDIIDMTHEAVKWGDTII
>NC_017933.1|WP_014728887.1|2134721_2134895_-|hypothetical-protein
MSTTLVGAFFGWLMDTLSAVPALGIFVLLTLLALCLPAERAKKDHPDICSRKAAARR
>NC_017933.1|WP_014728888.1|2135057_2135393_-|hypothetical-protein
MKLLSWRFILPVVACAALAYWWLTPHFSHEDKAYYASVFCTIQTDKPDNWAASMENVIEGSNNDYALQRQHYSAALGREIISTWQGLNSTQRAALTSNPQTCGQQLARLLR
>NC_017933.1|WP_014728889.1|2135540_2136515_+|UV-DNA-damage-repair-endonuclease-UvsE
MKLGFACKFLDSGLKQEFPFKSTTRTRFLSLGHEARLTLLSQLAQTNLNNLYLTLEQLAQLPAALRMMRIGSDLLPLYTVPEAGPVYQEFLSDLAPLFTRCGEFARTHDIRLSFHPGQYSVLASDNPDVVERAIEDVEYHALCAVMMGYGQRFQDFKINIHMNGKRGFEGFREAFGRLSPQAQRMLTVENDEISCSLDDVLQAQALCPIVLDIHHHWVKENAFITPDDPRIEQIKASWRGVRPVMHYSISQEGLIPEQGFPEQSQLGIPKTKLRAHSDYYFNSTLNDWALSFTDFDIMCEVKMKNIARDRLYDYALLKGVVKAA
>NC_017933.1|WP_014728890.1|2136626_2137544_-|hypothetical-protein
MQQSKLSAITHDYLPDNNKGYYCMGSKSACQPFAADGAKIIPWSKDPEFDDSVVSLRLVLTDKNVKSLKGRPPQWLQGLSNLTFLQMPLELMVNLEPGDLPVGLKSLMLVHSETSVYSAPIAWRALAESTALEALILQNDFGSVSCADFTYVSDFRMLNLTFLSYDSSKNGKLATLIDNHKILELISIDNITKDEINSEAVRKASGLSLIGVDKSIDLHSLEGLSYLEAIFINGAKCEIDCSAFDKIPKIKEVEIINSKKITNPAALLANRNIKKIVVVNCGNPFKKSKGEVNPSDYDVLDIDFS

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Crispr_ID: NC_017933_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_10

2852793-2852887

Orphan

Consensus_repeat	Method
ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_10

>merge|NC_017933|10|2852793-2852887|CRISPRCasFinder
ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACACAGCCCACGGAGCGGACGTTGACGGAATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC

>NC_017933|10|10|2852793-2852887|CRISPRCasFinder
ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC	AGCCCACGGAGCGGACGTTGACGGA
ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_004387498.1\|2845286_2846528_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NC_017933.1\|WP_014729284.1\|2862272_2862749_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NC_017933.1\|WP_014729283.1\|2861578_2862259_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NC_017933.1\|WP_014729277.1\|2852914_2854936_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_017933.1\|WP_014729272.1\|2847882_2848590_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_017933.1\|WP_014729274.1\|2849138_2849384_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NC_017933.1\|WP_014729280.1\|2857206_2857965_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NC_017933.1\|WP_014729282.1\|2860218_2861511_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NC_017933.1\|WP_014729279.1\|2856530_2857214_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NC_017933.1\|WP_014729276.1\|2849865_2850378_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NC_017933.1\|WP_014729278.1\|2855826_2856534_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274567
NC_017933.1\|WP_004385710.1\|2859096_2860137_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NC_017933.1\|WP_004387497.1\|2844528_2845290_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NC_017933.1\|WP_014729275.1\|2849376_2849862_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_017933.1\|WP_014729273.1\|2848684_2849137_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NC_017933.1\|WP_014729271.1\|2846527_2847556_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NC_017933.1\|WP_004387506.1\|2850399_2851389_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_017933.1\|WP_014729281.1\|2857948_2859100_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_017933.1\|WP_007848473.1\|2855416_2855653_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_007848476.1\|2851733_2852642_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_004387498.1\|2845286_2846528_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NC_017933.1\|WP_014729284.1\|2862272_2862749_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	3.31536e-116
NC_017933.1\|WP_014729283.1\|2861578_2862259_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	2.1353e-114
NC_017933.1\|WP_014729277.1\|2852914_2854936_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_017933.1\|WP_014729272.1\|2847882_2848590_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	7.69328e-77
NC_017933.1\|WP_014729274.1\|2849138_2849384_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	7.56602e-50
NC_017933.1\|WP_014729280.1\|2857206_2857965_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.24795e-149
NC_017933.1\|WP_014729282.1\|2860218_2861511_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NC_017933.1\|WP_014729279.1\|2856530_2857214_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	6.64988e-106
NC_017933.1\|WP_014729276.1\|2849865_2850378_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	8.52757e-96
NC_017933.1\|WP_014729278.1\|2855826_2856534_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.70333e-66
NC_017933.1\|WP_004387497.1\|2844528_2845290_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	8.08801e-89
NC_017933.1\|WP_014729275.1\|2849376_2849862_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.97156e-104
NC_017933.1\|WP_014729273.1\|2848684_2849137_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	3.25411e-115
NC_017933.1\|WP_014729271.1\|2846527_2847556_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	1.86556e-54
NC_017933.1\|WP_004387506.1\|2850399_2851389_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NC_017933.1\|WP_014729281.1\|2857948_2859100_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_017933.1\|WP_004385710.1\|2859096_2860137_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NC_017933.1\|WP_007848476.1\|2851733_2852642_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.81103e-125

>NC_017933.1|WP_007848476.1|2851733_2852642_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTFADLDRVVALGGGHGLGRVMSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDAFLIPMSEQPVDLMAIDRDDNEVYGEVNIDLLSHPPKELMLYPAVQATREAVEAIAEADLIVIGPGSFYTSLMPLLLLDDLAKALRRTPAPMVYIGNLGRELSPAAAALRLEEKLALMEAHIGKRVVDAVVVGPKVDVSGAQDRIVIQEPLEASDIPYRHDRHLLRAALEKAIQALG
>NC_017933.1|WP_004387506.1|2850399_2851389_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSVTDVCNFRCTYCLPDGYKPAGVTNKGFLSLDEIRRVTRAFANLGTEKVRLTGGEPSLRRDFCDIIAAVRENPSIRQIAVTTNGYRLARDVAQWREAGLTAVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVKVNTVLMRDVNHHQLDTFLNWIQSRPIQLRFIELMETGEGSDLFRKHHISGATIRDELLKRGWIHQLRSRADGPAQVFCHPDYQGEIGLIMPYEKDFCASCNRLRVSSVGKLHLCLFGDGGVDLRDLLAEEGQQAALMARIETALLGKKQTHFLHQGNTGITQNLSYIGG
>NC_017933.1|WP_014729276.1|2849865_2850378_-|molybdenum-cofactor-biosynthesis-protein-B
MSQVSAEFAPARVAILTVSSRRGEEDDTSGHFLRDAAHEAGHQVVDKAIVKENRYAIRAEVSRWIASDDVQVVLINGGTGFTAGDQVPEALQPLFDREIAGFGEMFRMLSFEEIGTAMMQSRAVAGMANDTLIFAMPGSTRACRTAWENIIAPQLDARTRPCNFHPHLKK
>NC_017933.1|WP_014729275.1|2849376_2849862_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINAAGEAHMVDVSGKAETVREARAEAFVEMRPETLSMIVNGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLFADEARSRVRIESLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFQVDAHD
>NC_017933.1|WP_014729274.1|2849138_2849384_-|molybdopterin-synthase-sulfur-carrier-subunit
MINVLFFAQVRELIGVDAERVAAEFPTVEALREHFAARGGRYALALESGKLLAAVNQTLVPFDHPIADGDEVAFFPPVTGG
>NC_017933.1|WP_014729273.1|2848684_2849137_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSETRIRVGHENFSVGDEYQWLAQCDEDGAVVTFTGKVRNHNFGDSVSALTLEHYPGMTEKALAEIVAEARERWPLQRVSVIHRVGELWPGDEIVFVGVTGAHRSQAFDAAQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQAAAKRW
>NC_017933.1|WP_014729272.1|2847882_2848590_-|Bax-inhibitor-1/YccA-family-protein
MDRFPRSNESIVQPRAGLQTFMAQVYGWMTCGLLLTAFVAWYSANNENLMMYIFSSRFVFFGLIIAQLVLVFVLSGLVHKLSPAVATALFMLYSALTGLTLSSIFLVYTYASIASTFVVTAGMFGVMSLYGYTTKRDLSGWGNILFMALIGLIIASLVNFWLKSTALMWAVTYIGVIVFVGLTAYDTQKLKALGEQIDVNDHGNLRKYSILGALTLYLDFINLFLMLLRIFGNRR
>NC_017933.1|WP_014729271.1|2846527_2847556_+|UPF0104-family-protein
MAKSHPKWRIAKKILTWVFFIAVVVLIVMYAQKVDWEEVWKVIKNYDRTALLISVALVILSYLLYGCYDLLGRAYCGHKLAKRQVMLVSFVCYAFNLTLSTWVGGVGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGVIFTFGVVKLPAHWYIDEMTLRIIGIALLAVIAVYMWFCAFAKRRHVTIKGQKLVLPSWKFAIAQMVISSANWMAMGAIIWLLLGQEINYFFVLGVLLVSSIAGVIIHIPAGIGVLEAVFIALLGGEHVSHGAIIAALLAYRMLYFFAPLLLAIVIYLVLESRAKKLRAKNEQKLAKAQGSDSVREEDGEPSLSLAKEK
>NC_017933.1|WP_004387498.1|2845286_2846528_+|cardiolipin-synthase-ClsB
MKTTWRDGNHIELLENGDEFYPAVFDAIDKARSKVILETFIWFDDNVGRQLHDVILNAAQRGVSIEVLLDGYGSPDLSDEFVGTLTSAGVMFRYYDPRPRTMGMRTNVFRRMHRKIVVIDGEVAFVGGINYSAEHMSDYGPEAKQDYAVRVEGPVVQDIYHFVLSNLGEERVSRWWQRHYQQAVENTTPGEAQALFVWRDNNDHRDDIERHYLKMLANAKKEVIIANAYFFPGYRLLHAMRNAARRGVKVKLIVQGEPDMPIVKVGARLLYNYLVKGGVEVYEYLRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDTQFNQTLRDNLTRLIREDCKQVDESMMPKRTWWNLAKSVIVFHFLRHFPAMVGWLPAHTPKLAQVPPPVQPEIETQDRVETENPGVKP
>NC_017933.1|WP_004387497.1|2844528_2845290_+|endonuclease/exonuclease/phosphatase-family-protein
MADNTQRFSFNVLTINTHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTTHYEFLADTMWSDYAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVPGTEKRGVLHCRITPPGFPKAIHVICVHLGLKEAHRQAQLTMLAELVNSLPEGEPVVVAGDFNDWRQQANRILRNEAGLDEVFTRAHGRPARTFPVSFPLLRLDRIYVKNASASAPTALPLRNWRHLSDHAPLAVEIHL
>NC_017933.1|WP_014729277.1|2852914_2854936_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALGENIAKTKPKGRGKGRTVADAESAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRDKLHQLRELFIAAS
>NC_017933.1|WP_007848473.1|2855416_2855653_-|hypothetical-protein
MKCPSIAPEIETKPESLRQAQWVILEKAGRRAHFECWSGRGFGAALRKSKAKMCEKDRAKRRAESKGNSSKPAGKIFF
>NC_017933.1|WP_014729278.1|2855826_2856534_+|ATP-binding-cassette-domain-containing-protein
MLSLHAVNHFYGTQHTLWDVSLDLLPGECTCVIGAPGMGKTTLLNCVAGYLPVKSGSMLWHETGAAPQELMRVGPDARAALGIRYVPQERRYFSQLTVEENLHIALRAQPENAASPEPVFDLLPTLWTNRHTQAAGLEPELALQLSLAQALVTRPRLLILDEPTRGLGQAFIPRLADLLTRLSREWGMSLLVVERHLSFIRRVADRFCLLHRGRAVARGSAAQLTDARLMHWIAP
>NC_017933.1|WP_014729279.1|2856530_2857214_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTERWFITGTDTEVGKTIASCALLEAAKAAGFSTAGYKPVASGSDITPQGLRNSDALALQRHSSVALSYEQVNPLTFEEPTSPHIVSQEQGLPIDFTVMSAGLRALEPLADWVQVEGAGGWFTPLSDDATFADWVQQERLPVILVVGVKLGCINHALLTAQAVQAAGLRLAGWVANDVQPPGRRHQEYLATLEQLLPAPMLGEIPWLGAEPDVTPAAQWIDLSKLAR
>NC_017933.1|WP_014729280.1|2857206_2857965_-|malonyl-ACP-O-methyltransferase-BioC
MTVAVDKRAVAAAFGRAAQTYDDFAALQRQSAQLLAEHCGAQGINTVLDAGCGTGAGSLDWRARGCDVTAFDLSPAMLARARERGAAHRYVQGDIEALPFAEESFDLVWSNLAVQWCQSLSEALAGMLRVARPGGRVAFSTLAHGSLDELHQAWAAVDDRPHANRFASAEAVHAAAPVARMTLRQHPVTLLFGDALSAMQSLKGIGATHLHAGRDSRTLTRRELRRLEDAWPRQDGHFPLTYQLISGVIERD
>NC_017933.1|WP_014729281.1|2857948_2859100_-|8-amino-7-oxononanoate-synthase
MTWQARIDAALRAREASHSLRRRVVCTPAPGGALVHQGVRYRNFSGNDYLGLTQHPALIAAWQQGAQTYGVGSGASGHVSGYSDAHQSLENALAQWLGFDRALLFISGFAANQAVVAALMQQSDRILADRLSHASLLEAASHSPATLRRFAHNDSGALAALLGKPCDGLTLVFTEGVFSMDGDSAPLADIAGIAQGAQTLLMVDDAHGVGVLGREGRGSCDVAGIRPDLLLVTFGKAFGLSGAALLCSAPMADYLLQTARHLIYSTAMPAAQACALNAALTVIREGDDLRARLARNIARFRAGAASLPLTLADSQTAIQPLIVGENSAALTLAEKLRERGCWVTAIRPPTVPAGTARLRLTLSAAHQDEDIDALLEALYDGCR
>NC_017933.1|WP_004385710.1|2859096_2860137_-|biotin-synthase-BioB
MAHLSRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLDSARKAKAAGSTRFCMGAAWKNPNDRDMPYLEQMVQGVKALGLETCMTLGTLSDDQAQRLGEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVREAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNEDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQERLEHALRDADNQQYYNAAAV
>NC_017933.1|WP_014729282.1|2860218_2861511_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MITPADLAFDRDHIWHPYTSMSAPLPVYPVTHAAGCELHLASGERLVDGMSSWWAAIHGYNHPRLNAAMKTQIDAMSHVMFGGITHPAAIALCRKLVAMTPEKLECVFLADSGSVAVEVAMKMALQYWHARGEPRQRFLTFRHGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRFDGEWDERDLAPFARLLAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRIRRMCDREGILLIADEIATGFGRTGKLFACEHAGVTPDILCLGKALTGGTMTLSATLTTRHVADTISNGEAGCFMHGPTFMGNPLACAVAAESLALLETGEWRAQVAAIEQQLRDELAPCRELPQVADVRVLGAIGVVETTAPVEMAALQRFFVEQGVWVRPFGRLIYLMPPYLITPEQLSRLTRAVCEAVKNPPFFRQ
>NC_017933.1|WP_014729283.1|2861578_2862259_+|type-1-glutamine-amidotransferase-domain-containing-protein
MKILMVLTSHDKLGDTGKKTGFWLEEFAAPYFVFRDAGIDVTLATPQGGQPPLDPKSDAPDAQTADTRRFREDQEAQATLANTARLDEINADEYDALFYPGGHGPLWDLADHPISIALIEHYWGSGKPVATVCHAPGVLRHVKKPDGSPLVEGKRVTGFTNSEEDAVGLTNVVPFLVEDALKEAGGQFERTDDWGVHVVVDGHLVTGQNPASSAATAEALLKLLHL
>NC_017933.1|WP_014729284.1|2862272_2862749_+|kinase-inhibitor
MKLISVNFNDGDKLPARHVFNGMGYEGDNISPHLTWDEVPPGTKSFVVTCYDPDAPTGSGWWHWIVANLPADTRVLPQGAGSGQAELPDGAIQTRTDFGTAGYGGAAPPKGETHRYIFTVHALDVDRIDVDENASGAMVGFNVHFHRLASASLTAHYI

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Crispr_ID: NC_017933_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_11

2910539-2910610

Orphan

Consensus_repeat	Method
TATTTAACGTAGGGCGGGTAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_11

>merge|NC_017933|11|2910539-2910610|CRISPRCasFinder
TATTTAACGTAGGGCGGGTAAGCGCAGCGCACCCGCCACAACCCATCTATATTTTACGTAGGGCGGGTAAGC

>NC_017933|11|11|2910539-2910610|CRISPRCasFinder
TATTTAACGTAGGGCGGGTAAGC	GCAGCGCACCCGCCACAACCCATCTA
TATTTTACGTAGGGCGGGTAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_007781922.1\|2905990_2907757_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NC_017933.1\|WP_004387831.1\|2905258_2905975_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NC_017933.1\|WP_014729306.1\|2911534_2912530_-\|DUF2891-domain-containing-protein	unknown	unknown	gnl\|CDD\|378592
NC_017933.1\|WP_007900435.1\|2900841_2902065_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NC_017933.1\|WP_007900468.1\|2916699_2917356_-\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|129467
NC_017933.1\|WP_014729303.1\|2902079_2904887_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_017933.1\|WP_014729302.1\|2897897_2898614_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182065
NC_017933.1\|WP_014729310.1\|2918130_2919552_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|236734
NC_017933.1\|WP_004387833.1\|2907757_2908105_-\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NC_017933.1\|WP_014729307.1\|2915049_2915784_-\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|235446
NC_017933.1\|WP_014729308.1\|2915773_2916706_-\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NC_017933.1\|WP_012125339.1\|2912549_2913536_-\|DUF979-domain-containing-protein	unknown	unknown	gnl\|CDD\|377620
NC_017933.1\|WP_004386657.1\|2913532_2914255_-\|DUF969-domain-containing-protein	unknown	unknown	gnl\|CDD\|368767
NC_017933.1\|WP_014729305.1\|2910637_2911429_-\|endonuclease-VIII	unknown	unknown	gnl\|CDD\|182467
NC_017933.1\|WP_014729309.1\|2917376_2918120_-\|type-2-GTP-cyclohydrolase-I	unknown	unknown	gnl\|CDD\|182741
NC_017933.1\|WP_004387835.1\|2909141_2910428_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NC_017933.1\|WP_004387834.1\|2908098_2908488_-\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NC_017933.1\|WP_004386658.1\|2914499_2915048_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|227918
NC_017933.1\|WP_004385340.1\|2898695_2899565_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_017933.1\|WP_004385341.1\|2899564_2900731_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_007781922.1\|2905990_2907757_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NC_017933.1\|WP_004387831.1\|2905258_2905975_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	1.84475e-167
NC_017933.1\|WP_014729306.1\|2911534_2912530_-\|DUF2891-domain-containing-protein	gnl\|CDD\|378592	pfam11199, DUF2891, Protein of unknown function (DUF2891). This is a bacterial family of uncharacterized proteins.	0
NC_017933.1\|WP_007900435.1\|2900841_2902065_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NC_017933.1\|WP_007900468.1\|2916699_2917356_-\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|129467	TIGR00370, Uncharacterized_protein_HI_1731, sensor histidine kinase inhibitor, KipI family. [Hypothetical proteins, Conserved].	4.57167e-98
NC_017933.1\|WP_014729303.1\|2902079_2904887_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_017933.1\|WP_014729302.1\|2897897_2898614_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.61877e-155
NC_017933.1\|WP_014729310.1\|2918130_2919552_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|236734	PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional.	0
NC_017933.1\|WP_004387833.1\|2907757_2908105_-\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	7.56859e-57
NC_017933.1\|WP_014729307.1\|2915049_2915784_-\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|235446	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA.	1.29186e-140
NC_017933.1\|WP_014729308.1\|2915773_2916706_-\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	4.95343e-159
NC_017933.1\|WP_012125339.1\|2912549_2913536_-\|DUF979-domain-containing-protein	gnl\|CDD\|377620	pfam06166, DUF979, Protein of unknown function (DUF979). This family consists of several putative bacterial membrane proteins. The function of this family is unclear.	9.54106e-155
NC_017933.1\|WP_004386657.1\|2913532_2914255_-\|DUF969-domain-containing-protein	gnl\|CDD\|368767	pfam06149, DUF969, Protein of unknown function (DUF969). Family of uncharacterized bacterial membrane proteins.	1.92541e-109
NC_017933.1\|WP_014729305.1\|2910637_2911429_-\|endonuclease-VIII	gnl\|CDD\|182467	PRK10445, PRK10445, endonuclease VIII; Provisional.	0
NC_017933.1\|WP_014729309.1\|2917376_2918120_-\|type-2-GTP-cyclohydrolase-I	gnl\|CDD\|182741	PRK10799, PRK10799, type 2 GTP cyclohydrolase I.	0
NC_017933.1\|WP_004387835.1\|2909141_2910428_+\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NC_017933.1\|WP_004387834.1\|2908098_2908488_-\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	1.26176e-78
NC_017933.1\|WP_004386658.1\|2914499_2915048_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|227918	COG5631, COG5631, Predicted transcription regulator, contains HTH domain (MarR family) [Transcription].	2.7258e-57
NC_017933.1\|WP_004385340.1\|2898695_2899565_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NC_017933.1\|WP_004385341.1\|2899564_2900731_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0

>NC_017933.1|WP_004387835.1|2909141_2910428_+|citrate-synthase
MADKKANLTYNGDGAIELDVLKGTLGQDVIDIRSLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATESNYLEVCYILLYGEKPTQEQYDEFRTTVTRHTMIHEQITRLFHGFRRDSHPMAVLCGVTGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTVAAMCYKYSIGQPFVYPRNDLSYSGNFLNMMFSTPCEPYEVNPVLERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISTVEHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWNEMHSEGMKIARPRQLYTGYEQRDFKSDLTKR
>NC_017933.1|WP_004387834.1|2908098_2908488_-|succinate-dehydrogenase-cytochrome-b556-subunit
MIKKVNKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFLTASNIMDSFFVKFILWGILTALAYHVVGGVRHMLMDFGYLEETFAAGQRSAKFAFIITVVLSILAGVLVW
>NC_017933.1|WP_004387833.1|2907757_2908105_-|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATSIVMTLYIIYMIGFFAMNGDLTWEVWTGFFSSTFTKVFTLLTLISILVHTWIGMWQVLTDYVKHLALRLFLQLAIVVALVVYVIYGFVVVWGV
>NC_017933.1|WP_007781922.1|2905990_2907757_-|succinate-dehydrogenase-flavoprotein-subunit
MNLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNSHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVIPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGQLRDASDSDVEFSLERLNRWNNNRSGEDPVEIRKALQECMQHNFSVFREGDAMAKGLEQLKAIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDYPDRDDENWLCHSLYLPQTESMTRREVNMQPKLRPAFPPKVRTY
>NC_017933.1|WP_004387831.1|2905258_2905975_-|succinate-dehydrogenase-iron-sulfur-subunit
MKLEFSIYRYNPDVDDAPRMQDYTLEQEEGRDMMLLDALMLLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPVSSLGAGKQKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETNARLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRSA
>NC_017933.1|WP_014729303.1|2902079_2904887_-|2-oxoglutarate-dehydrogenase-E1-component
MQNGAMKAWLDSSYLSGSNQSWIEQLYEDFLTDPDSVDAHWRSMFQQLPGTGAKPDQFHSKTRDYFRRLAKDASRYSSSISDPDTNAKQVKVLQLINAYRFRGHQHANLDPLGLWQQERVADLDPAFHDLTEADFQETFNVGSFALGKETMKLGDLIEALKQTYCGSIGAEYMHITSTEEKRWIQQRIESVAGHAGFSADEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGKSGTREVVLGMAHRGRLNVLINVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSVRARLDRLDEPSSNKVLPITIHGDAAVAGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVMAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEGVAKLEDATEMVNLYRDALDAGECVVKEWRPMNMHSFTWSPYLNHEWDESYPNKVEMKRLQELAKRISTVPDGIEMQSRVAKIYGDRQLMANGEKPFDWGGAETLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVVHNQANGSTWVPLQHIHNGQGQFKVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGAFQPAIGEVDELDPQGVKRVVLCSGKVYYDLLEQRRKNDQKDVAIVRIEQLYPFPHHAVQEALKPFAHVHDFVWCQEEPLNQGAWYCSQHHLREVIPFGSALRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVN
>NC_017933.1|WP_007900435.1|2900841_2902065_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDAVKRDEVLVEIETDKVVLEVPASADGVLDAVLEDEGSTVTSRQILGRLREGNSAGKESSAKPEAKESTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDAAAIKGTGVGGRLTREDVEKHLAKANGSESAKAPEQAAAAPQPQLGSRSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGDAFEKRHGIRLGFMSFYVKAVVEALKRFPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDVLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVDGKVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NC_017933.1|WP_004385341.1|2899564_2900731_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARSGLPTPVGYACSTPREAEEAASKIGSGPWVVKCQVHAGGRGKAGGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRGSRRVVFMASTEGGVEIEKVAEETPHLIHKVAIDPLTGPMPYQGRELAFKLGLEGKLVQQFTKVFMGLANIFLERDLALIEINPLVITSQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTDAAQQVVAAVEGK
>NC_017933.1|WP_004385340.1|2898695_2899565_-|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKGGTTHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHQPGRVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAYIKDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGDALKTILK
>NC_017933.1|WP_014729302.1|2897897_2898614_+|GntR-family-transcriptional-regulator
MAAKPKYRQIADTLREQISAGMLKPGDALPTESALQAQFGVSRVTVRQALKQLISEQIVESVQGSGTYVKEERVRYDIYQLTGFQEKLTDRQAETRSEVLLFEVIRPDETLATRLQLTTADKVWHVKRVRFIKQKPVILEETWMPVRLFTDLTWEVMEQSKYHYIEKVKKLVIDRSEQEILPVMPDAEVVQALGIDPAQPTLEKRSRGYLRDGQVFEYSRNVFKSDDYQFTLVARRRQ
>NC_017933.1|WP_014729305.1|2910637_2911429_-|endonuclease-VIII
MPEGPEIRRAADKLEAAVAGKPLTHVWFAFPELKAFEAQLTGARVERFETRGKALLTHFSCGLTLYSHNQLYGVWRVVKAGETPQTTRSLRVRLETEDAAVLLYSASEIEMLDADGVAAHAFLQRVGPDVLDMSLTVEQVKERLLSPRFHRRQFSGLLLDQAFLAGLGNYLRVEILWQAQLAPRHKAIELNNTQLDALARACLEIPRLSYQTRGTVDENKHHGALFRFEVFHRAGKKCRRCGGIIEKTTLSSRPFYWCPGCLA
>NC_017933.1|WP_014729306.1|2911534_2912530_-|DUF2891-domain-containing-protein
MTLTQPQADAFARMPLTYLRQEYPNHIMHLMNDDADALPPRELHPIFYGCFDWHSAVHGYWLLLRCLRRYPTLSCREEIIALFDDHITPENVAREVAYFTAPFRASFERPYGYGWLLALAQELHESDLPQAARWHETLAPLTQDIRTRLIDYLSKLTYPIRVGTHYNTAFALALGLDYARALGDEALERAITDATARFYQADTDYPAHYEPGGDEYLSGALTEALLMSKTADNFPAWFDAYLPDIGNVAALMHPAVVSDRADPKIAHLDGLNLSRAWCMKHIAAALPEDHPAQTALQEAVQRHLAASVEHVVGSHYSGGHWLASFALLALE
>NC_017933.1|WP_012125339.1|2912549_2913536_-|DUF979-domain-containing-protein
MSTLLTINRVYYLIGFIVMLLVVMTLRDRGNPKRFTTALFWFLFGGIFLFGDLLVQELGRSLAYRIIGGAVIVIALLAGFGLVGKGHYKMSTEEEREASSRRLGNWLFLPALLIPVVTVIGTLFLKGVSVGGVFLLDQKQLTLAALCVACVAALLVGWWLTRGTPLHAIRQSRRLVDTIGWAVILPQMLAMLGGVFVAADTGTAVQRVVSLFVDPENRFMLVVIYCIGMALFTMIMGNAFAAFPVLSAGIALPLLINHHHGDPAPLLAIGMYAGYCGTLMTPMAANFNIVPAALLELKDKYQVIKIQIPTALTLLVVNVFLMYFIVFR
>NC_017933.1|WP_004386657.1|2913532_2914255_-|DUF969-domain-containing-protein
MDGSSLLPLIGIPVVVIGFALRFNPLLVVVVAGLTTGLTVGMDFGMLLETFGEKFVNSRSLATFILILPVIGLLEYYGLKERAQAWVAKIASATSARILMLYFVVREGTAALGLMSLGGHAQTVRPLLAPMAEGAALNEYGELPAHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLIDAFLKENGIPGIEPLHIGLWAIPTAIAALIIHMARLLRLDASIRREVLAWRAEQGNQEAAQ
>NC_017933.1|WP_004386658.1|2914499_2915048_+|winged-helix-DNA-binding-protein
MSRKKAVVSTDNDDIADGRIVSSRHLVSERCAELSELEYALIMTSNAFNKWMVRCMTAAGEPDMGAFDVSLLHHVNHRNRKKKLADICFVLNVEDTHIVTYALKKLVKAGYVTSEKVGKELYFSTTEEGKALCMKYRDVREACLIAIQVESGIPGAAIGETAQLLRTIASLYDTAARAAASL
>NC_017933.1|WP_014729307.1|2915049_2915784_-|5-oxoprolinase-subunit-PxpA
MKIDLNADLGEGCGNDALLMPLISSANIACGFHAGDAQTMRESVRLALAHGVAIGAHPGFADRENFGRTVMQLPPETIYAETLYQVGALAAIARAEGGRLAHVKPHGMLYNQAAKDAALADAIAQAVKDFDASLILVGLAGSELIRAGARYRLATREEVFADRGYLADGALVPRSEPGALIEDDDEAVSRTLMMVQEGRVRSRDGAWATVNAQTVCLHGDGAHALAFARRLREAFDARQIQVSA
>NC_017933.1|WP_014729308.1|2915773_2916706_-|biotin-dependent-carboxyltransferase-family-protein
MLKIIRAGIHATIQDGGRFGLRQYGVSQCGALDGPSLHIANLLVGNDPDAAALEITLGQCVVEFTEDTWFALTGAGCDATLNERAVWTGWRLLARAGERLSLKLPRRGMRSYLALAGGFDVPEVMGSRSTDVKAGLGGFEGRPLCDGDVLPVNPPTRHFREARGVKQLLWGNRIRALPGPEYHEFSEASKEAFWRTPWQLSPQSNRMGYRLHGHVLERTTRRDLVSHGLLPGVVQVPHGGQPIVLMNDAQTTGGYPRIACVIDADRYNLAQLRLGEPIHFVPCSIEEALEARSDRARYLQQLAWRLNDED
>NC_017933.1|WP_007900468.1|2916699_2917356_-|5-oxoprolinase-subunit-PxpB
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLVQRLADVPAVVEVIPGMNNITVMLREPGTMALDAIERLQRWWEESEAIIPEARRIEIPVVYGKDAGPDLSVVAHHAGLSEKQVVEMHAQVDYVVYFIGFQPGFPYLGGLAPELATPRRAEPRLQVPAGSVGIGGSQTGIYPLPTPGGWQIIGHTSRALFDPHSNPPGLLAPGDTVRFVPQKEGVC
>NC_017933.1|WP_014729309.1|2917376_2918120_-|type-2-GTP-cyclohydrolase-I
MKNSELEQLINDKLNSATFSDYAPNGLQVEGRDEVRKIVTGVTASQALLDEAVRLEADAVIVHHGYFWKGESPVVRGMKRNRLKTLLTNDINLYGWHLPLDAHPQLGNNVQLAQLLGIDVKGEIEPLVPWGELSMAVSGPEFASWLEARLGRRPLWCGDTGPDLIKRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQSLHFYAAGHHATERGGIRALSEWLNETTDLDVTFIDIPNPA
>NC_017933.1|WP_014729310.1|2918130_2919552_-|deoxyribodipyrimidine-photo-lyase
MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLEALQQALAKRGIALFMREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERRLEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPPCVSAPKPRHGGAITDVPGLAPFDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTSLLSAYLAIGVLSPRQCLHRLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFIRRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE

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Crispr_ID: NC_017933_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_12

3102484-3102566

Orphan

Consensus_repeat	Method
GCGTTGCGACGGCGGGTGCGCGTCGCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_12

>merge|NC_017933|12|3102484-3102566|CRISPRCasFinder
GCGTTGCGACGGCGGGTGCGCGTCGCTTAACCGCCCTACGAAACTGTCTGCTTCGCGTTGCGACGGCGGGTGCGCTTCGCTTA

>NC_017933|12|12|3102484-3102566|CRISPRCasFinder
GCGTTGCGACGGCGGGTGCGCGTCGCTTA	ACCGCCCTACGAAACTGTCTGCTTC
GCGTTGCGACGGCGGGTGCGCTTCGCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014729403.1\|3093092_3094775_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NC_017933.1\|WP_007891943.1\|3090438_3090918_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634
NC_017933.1\|WP_004386900.1\|3111306_3111639_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_017933.1\|WP_004385034.1\|3098965_3100231_-\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NC_017933.1\|WP_014729402.1\|3089436_3090237_+\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|226258
NC_017933.1\|WP_004386902.1\|3113785_3114337_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_017933.1\|WP_014729409.1\|3107104_3109594_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_017933.1\|WP_012125442.1\|3102654_3104529_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NC_017933.1\|WP_014729405.1\|3097800_3098955_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NC_017933.1\|WP_014729408.1\|3106500_3107076_-\|fimbrial-protein-SthD	unknown	unknown	gnl\|CDD\|185193
NC_017933.1\|WP_004386899.1\|3110406_3110943_-\|fimbrial-protein-SthA	unknown	unknown	gnl\|CDD\|185196
NC_017933.1\|WP_004387931.1\|3096717_3097680_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_017933.1\|WP_014729406.1\|3100351_3101485_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226355
NC_017933.1\|WP_004387930.1\|3095349_3096654_-\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
NC_017933.1\|WP_007891936.1\|3101619_3102264_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NC_017933.1\|WP_004386895.1\|3104686_3105292_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_017933.1\|WP_014729410.1\|3109689_3110367_-\|fimbrial-assembly-chaperone	unknown	unknown	gnl\|CDD\|237936
NC_017933.1\|WP_014729407.1\|3105366_3106470_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|237935
NC_017933.1\|WP_041460888.1\|3111721_3113695_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NC_017933.1\|WP_004387266.1\|3090919_3092572_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014729403.1\|3093092_3094775_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NC_017933.1\|WP_007891943.1\|3090438_3090918_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	9.94549e-113
NC_017933.1\|WP_004386900.1\|3111306_3111639_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.21374e-46
NC_017933.1\|WP_004385034.1\|3098965_3100231_-\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	1.57319e-67
NC_017933.1\|WP_014729402.1\|3089436_3090237_+\|TraB/GumN-family-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	7.86354e-76
NC_017933.1\|WP_004386902.1\|3113785_3114337_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	2.82565e-101
NC_017933.1\|WP_014729409.1\|3107104_3109594_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_017933.1\|WP_012125442.1\|3102654_3104529_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NC_017933.1\|WP_014729405.1\|3097800_3098955_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NC_017933.1\|WP_014729408.1\|3106500_3107076_-\|fimbrial-protein-SthD	gnl\|CDD\|185193	PRK15293, PRK15293, fimbrial protein SthD.	1.72561e-97
NC_017933.1\|WP_004386899.1\|3110406_3110943_-\|fimbrial-protein-SthA	gnl\|CDD\|185196	PRK15296, PRK15296, fimbrial protein SthA.	5.26443e-69
NC_017933.1\|WP_004387931.1\|3096717_3097680_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	2.8955e-163
NC_017933.1\|WP_014729406.1\|3100351_3101485_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	7.58322e-127
NC_017933.1\|WP_004387930.1\|3095349_3096654_-\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
NC_017933.1\|WP_007891936.1\|3101619_3102264_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.33895e-133
NC_017933.1\|WP_004386895.1\|3104686_3105292_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.0058e-118
NC_017933.1\|WP_014729410.1\|3109689_3110367_-\|fimbrial-assembly-chaperone	gnl\|CDD\|237936	PRK15295, PRK15295, fimbrial assembly chaperone.	9.45941e-136
NC_017933.1\|WP_014729407.1\|3105366_3106470_-\|type-1-fimbrial-protein	gnl\|CDD\|237935	PRK15292, PRK15292, type 1 fimbrial protein.	0
NC_017933.1\|WP_041460888.1\|3111721_3113695_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NC_017933.1\|WP_004387266.1\|3090919_3092572_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0

>NC_017933.1|WP_007891936.1|3101619_3102264_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHIKFNPPKVEGKDDVTGEALTTRKDDQEETVRKRLVEYHEMTEPLIGYYRKEAEAGNTRYAKVDGTKAVGDVRAELEKILG
>NC_017933.1|WP_014729406.1|3100351_3101485_-|helix-turn-helix-domain-containing-protein
MFRQTPLLDESTARLIVRRAMSIIDYPVNVMDSHGVIIASGDPQRLMERHEGALLALAESRVVEIDAATARHLKGVRPGINLPFCFRQRQIGVIGISGEPSQVRACGELVKMAAELMVEQAALLEQNQWEKRYREELTLQLLAGGGDTEARESMAAWLGVALSVPRIAWIIELRDGNPQQMRELLAELEREARDALFAMTGFSEMVMLRPASMENGQWSPQQERHQAQHLHVLWQGRFNVRLILGGFYPGDAGPSRSLRAARATQSMARRLKLRHKTLVYDENPLAALLCDLGDDWRAEELGAPWRRLAEHDDKGVLRQTLRHYFSRNCEQAQTASALHIHVNTLRYRLQRIEAITGLKINQLSDCLQLYVGMLTQA
>NC_017933.1|WP_004385034.1|3098965_3100231_-|GntP-family-permease
MTTVSTLGALTALVVAIVLILRKVPPAYGMLAGALAGGLVGGADLVHTVSLMIEGAQGITNAVMRILAAGVLAGVLIESGAAHTIAETIVRKVGEKRSLLALAIATLILTAVGVFIDVAVITVAPIALSIAQRAGISRIAILLAMIGGGKAGNVMSPNPNTIAAADNFHVPLTSVMLAGVIPGLFGLAMACFLANRLSNKGSRVTEQELPVQDTGPRPGFAAAISAPLVAILLLSLRPIAGIAVDPLIALPAGGLAGALLMGRLRQCNTFMVSGLSRMAPVAIMLLGTGALAGIIANSGLKDVLIDTLTHTGLPAWLLAPLSGTLMSMATASTTAGTAVASAVFSHTLLELGVSGIAGAAMIHAGATVLDHLPHGSFFHATGGSVGMTVHERLKLLPYETLVGFTIATISALMFGVLGVAA
>NC_017933.1|WP_014729405.1|3097800_3098955_-|glycerate-kinase
MTTLKKIVIAPDSFKESLSAMDVAKAIEAGFREIYPQAHYVCVPMADGGEGTVEAMVAATGGQIITTPVTAPLGNKVDSFFGLLGDGETAVVEMAAASGLHLVPTAQRDPRITTSYGTGELILAALERGVKAIIIGIGGSATNDGGAGMMQALGARFLDGEGRELAPGGAALARLERLDLSALDPRLAQVSVTAACDVDNPLCGEKGASAVFGPQKGATPAMVTELDAALRRFGEQLEAATGKAIISAPGAGAAGGMGAALLGMLNAELRPGIEIVIESLGLAQAVRDADLVITGEGRLDSQSIHGKTPVGVARVAKQFQRPVVAIAGSLTPDYQIVHEHGIDAAFSVIDRIVTLQEALDDAERNLRVIARNVAALWHLAENRR
>NC_017933.1|WP_004387931.1|3096717_3097680_-|ferrochelatase
MQSVKSGVLLVNLGTPQAPTPAAVKRYLKQFLSDRRVVDVPRFIWWPLLRGVILPLRSPRVAKLYKSIWMEEGSPLMVYSRRQEKALSAALGDVPVALGMSYGQPSLDSAVQKLLDQHVDHIIVLALYPQYSCSTVAAVWDELARITARYRKLPSMTLIRDYACEPAYISALAQSVQRSFEKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSALGIAPEKVMMTFQSRFGREPWLTPYTDETMKMLGEKGVKHIQVMCPGFSSDCLETLEEIAEQNREIFIEAGGEKYEYIPALNDEPAHIAMMKELVDRYR
>NC_017933.1|WP_004387930.1|3095349_3096654_-|inosine/guanosine-kinase
MKFPGKRKSKHYFPVSDRDPLLQQIQPESDVSASWVVGIDQTLVDIEARVDDAFIERYGLSLGHSLVIEDDVAEALYQELVRENLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCNNVQIGSYAYRYLCNTSSRTDLNYLQGVDGAIGRCFTLISEQGERTFAISPGQMNQLRPESIPEEVIAGASALVLTSYLVRCKPGEPMPEATMTAIRYAKKHNVPVVLTLGTKYVIADNPQWWRDFLKEHVSILAMNEEEGEALTGESDPLLASDKALDWVDLVLCTAGPVGLYMAGFTEEEGKRKTQHPLLPGAIAEFNQYEFSRAMRFKDCEKPLRIFSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANNYHRTNVPNSSKHKYAWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEEAYWER
>NC_017933.1|WP_014729403.1|3093092_3094775_+|Kef-family-K(+)-transporter
MHHATPLITTLVGGLVLAFILGMLANRLRISPLVGYLLAGVVAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAILQIAVATLLGAGLSTFLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIESQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMLEKGDLGLATLSLDMGITLGKVIAFIALMMLVGRRLVPWILARSAATGSRELFTLAVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILVQQPLAVLCTLLIILFGKSIAAFALVKLFGHSRRTALTIAVSLAQIGEFAFILAGLGMALDLLPQDGQNLVLAGAILSIMLNPVLFVLLERFLSRHDELEEQTLEEAMEEEQQNPVDICNHALLVGYGRVGSLLGEKLIAEGIPLVVVETSRTRVEALRERGVRAVLGNAANEQTMTLAHLDCARWLLLTIPNGYEAGEIVAAAREKRPDIEIIARAHYDDEVDYITERGANEVVMGEREIASTMLRMLDKPEQAQEILSHS
>NC_017933.1|WP_004387266.1|3090919_3092572_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MGLARKGLAVALLAGLSLLSGGASAWEQDKTYNITILHTNDHHGHFWRNEYGEYGLAAQKTLVDSVRREVTAQGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLSVLRQQEKWAKFPLLSANIYQKSTNERLFKPWAIFKPQGIKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQNEKPDVIIAATHMGHYDNGDHGSNAPGDVELARALPAGALTMIVGGHSQDPVCMASENKKQVDYVPGTPCAPDRQNGTWIVQAHEWGKYVGRADFQFRNGEMKLVRYQLIPINLKKKVTWDNGQTERVLYTPQIPENPQMLSLLTPFQKKGQAQLMVKIGSVNGRLEGDRSKVRFVQTSMGHLILNAQIARTGADFAVMSGGGIRDSIEGGDITYKDVLKVQPFGNTLVYVDMTGKEVLEYLTAVAQKKPDSGAYPQFANVSFTASGGTLNDVKIKGEPVDPAKTYRMATLSFNATGGDGYPPIDKKPGYVNTGFVDAEVLKQYIQQSSPLDVNAFEPKGEVSWQ
>NC_017933.1|WP_007891943.1|3090438_3090918_+|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVNLLEKNKIAFTLHAYEHDPNETNFGDEVVRKLGLNAEQVYKTLLVAVNGDMKHLAVAVTPVATQLDLKKVAKALGAKKVEMADPMIAQRTTGYLVGGISPLGQKKRLPTLIDAPARDFPTIYISGGKRGLDIELAAADLATLLNAQFADIARRD
>NC_017933.1|WP_014729402.1|3089436_3090237_+|TraB/GumN-family-protein
MGLLRRLRTWFDTLRPGYPWPAVDITLPGGRYMHLVGSIHMGTADMAPLPARLVEKLRRADALIVEADIRGDNSPFGDPPPCPPLGERLDEALFLQLEKLIDDLALPLSRLDTLPLWQVALILQAHQAQRLGLRPDFGIDYQLLNAAQTHQVKVSELEGAQSQVELLRRLPQDGLALLEDTLTHWHTNARLLQIMMGWWMARPPEAAGSVALPNTFSAELGDMLMQQRNRQWHHYLLSLPPGRYVVAVGALHLYGEDNLPAMFRAS
>NC_017933.1|WP_012125442.1|3102654_3104529_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSSPDLYEGDGDLRVRVSFDKDKRTLTIADNGIGMTRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGVSADEAVFWESEGEGEYTVADISKADRGTEITLHLREGEDEFLNDWRVRSIISKYSDHIALPVEIETREEKDGETIVSWEKINKAQALWTRSKGEVSDDEYKAFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSSITRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDSANQEAIAKLLRFASTHTDSAAQTVSLADYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMSYLTEFDGKAFQSVAKADESLEKLADEVDESAKEAEKALEPFVERVKTLLGDRVKEVRLTHRLTDTPAIVTTDNDEMSTQMAKLFAAAGQAVPEVKYIFELNPDHQLVKRTADTQDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS
>NC_017933.1|WP_004386895.1|3104686_3105292_-|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEKCNICTNPRRQENGQICVVESPADIHAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAAEPLKEIILATNPTVEGEATANYIAELCAQYGVDASRIAHGVPVGGELEMVDGTTLSHSLAGRHKMTF
>NC_017933.1|WP_014729407.1|3105366_3106470_-|type-1-fimbrial-protein
MRWPVLMFMLFFSLLSTTTHAACQRDRSDDISVSSVHLPEHIVVESGSYAQDTVLYDSGYIAGSDDKVTIHNCNMGYFVGFIYLNAPQTGDSLGGHIYPTNLDGVGVRVFTLNQAGPYDDETTIDNDWRNGDGSLFGSSHTLNGSAYRLQLVATGGKISSGRLILPSPLARVDFRERENISSNGDIASQLDVSSSAVDVKAMGCTADTASLNFVMGDIDAAAFDNNSQVGEAQKTVTLSCEPGTNVTLEVQAPQAGGDTANNTVIALSDTGASDVATGVGVQLNLKLASGGYDSGKAGLPIGTPIPLLTSQRTYDVERGYSYFTDPANPGGAGASETLLFTANYYKTGAEVTPGKANAAGTLTLSYN
>NC_017933.1|WP_014729408.1|3106500_3107076_-|fimbrial-protein-SthD
MMKSWLRGVFSGRWRRMALALLISNALVPVSGLAAGSQDTINFSVTGTIIRPSCNIEAPSVVKLGTFNRQDLSIAGANSASIPVLVKLTGCTAGLSEATAQFSGQPYDNGAMGTAIYANQAENGAGDLGLQLINFDGKPLVNLANGVSYSVPIKADTHSGMLSLIARMYSPLGKPTAGDFSSSVTINFIYP
>NC_017933.1|WP_014729409.1|3107104_3109594_-|fimbrial-biogenesis-outer-membrane-usher-protein
MRVARANEYFNPHLLETSETSASALDLNLFSEEQTPAGDYNVDIYINGELVDAGTFTFRYVDTAENKRLLLPCLTLEQLRQWNIKVENYPDLTKQGETCANLLAIQGVSARLILNQQRFELSIAQLAMTHRARGYVPEEKWDDGITAGLLNYSFSGQTTTSRVSDAVRHSQFVSLQPGFNFGAWRLRNYSTLNINDGKHQWHSVYSHVSRDIRPLKSRLMIGEGNTDAKVFDSVAYTGVSLASDNDMLPDSQQGFAPVVRGIARSDAEVTVYQNGNSIYKTSVPPGPFEIDDIYPTGSAGNLNVTVKESDGSEQNFVVPFASLAVLQREHQLTYSLVAGTTRSDGDAKNALDFIQSDAAWGRSNALTFYGGLTQAQDIYSSYALGIGANLGNFGALSVDVTQAKAQLADRLTPGNMKSSTGQAWRMRYSKTLQETGTDISVASYRYATRGFYSFQDLINARDTAEEIDNTDHAQHRFDVTLSQSTKVGSLSLSLMKERYWNQSQMTSMNLGYGNNWGQITYFISYARNMNVTGSDDTKRTNDSLIALTVNVPFSAFDHKGELTSASMNYAMNSSAHGATMHSLGMSGSALAGNSLNWQVQEGYNATNKKTNGNVSLNYQNSWGEMSGGYGYDNFTSRYNYALRGGMVAHADGLTFSRTLNESVAIVTAPGAKDIPVNGQNNVHTDAHGNAVVPYVRPYHENAISLDESGLAQESDTDIENITKKVVPTRGAVVKARYQTFAGLKAMLTLTFHGKPVPFGALVTTSDNPDLTAHSDIVGEDGQVYLAGLSPKGQLQVRWGAESAQQCRVDYTLQPASTAGGIIFQQAACE
>NC_017933.1|WP_014729410.1|3109689_3110367_-|fimbrial-assembly-chaperone
MKPLAIALLCALSVSAAQASVVVGGTRVIFDGQQKAATLSVQNKDKTANLVQSWISPVSADSAAKDTMIITPPLFRLNAGEKASVRIVRSGKTLPDDRESMFWLNVKGIPAMEGIPAKNEVQIAINSRIKLIYRPASLRGNVPEFVADKLTWSADGNAVKVNNPTPYYMNFSTVTVNNTPVKSATFVAPFSSADFSLPKAQNHGDVKWQIINDFGMRGNEHTARY
>NC_017933.1|WP_004386899.1|3110406_3110943_-|fimbrial-protein-SthA
MMQLTKGGCGVIAVLAALCASEAALANSQTITFNGKVLDAACTVTVGDGSSTVELGETVKSDLVNKGDTGAPKLFTITLSSCPAGSPAKANIKFNGETDGDDSYFKNIATTDAATNVGVLLKQYGTDTVYVNDGNTDITLPAEGGDVTVDYTAQLVATGTGVTKGNVVSTLTYSISYQ
>NC_017933.1|WP_004386900.1|3111306_3111639_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
>NC_017933.1|WP_041460888.1|3111721_3113695_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLRALDPDQIRQQLEHVLTQEGIAHEPRALQLLARAADGSLRDALSLTDQAIASGDGQVTAQAVGAMLGTLDDDQALSLIEALVAADGERVMQQINDAAARGVEWEALLVEMLGLLHRVAMVQLSPSALGADMAPLEPRLCELARVVPPGDIQLYYQTLLIGRKELPWAPERRMGVEMTMLRALAFHPRAPLPEPEREVQPAAVLPVVNTPEAPAMPASQPAYQTQAQQPVSPAVSQPQPGAQTPLPDTTSQLLQARSQLQRAQGAAKTKKNEPAAPATARPVNNSALERLASVTERVQSRPAAVKEDAPAKKEAYRWKAKNIVPQAQQAPVATPRALKKALEHEKTPELAAKLAEEAIARDEWAAEVSRLQVPKLVEQVALNAWKEQDGQTVRLHLRPSQRHLNSASAQKTLADALGVLYGTPVELTIIEDDNLAHRTPLEWRQAIYEEKLAQAREAIIADTNIQTLRRFFDADLDEESIRPL
>NC_017933.1|WP_004386902.1|3113785_3114337_-|adenine-phosphoribosyltransferase
MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALALGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDIGGEERLNKQGITCYSLVPFPGH

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Crispr_ID: NC_017933_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_13

3139749-3140265

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCNCGCGGGGAACAC	CRT

8 spacers

cas2,cas1,cas6e,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_017933_13

>merge|NC_017933|13|3139749-3140265|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTCGCGCGGGGAACACTCAGAAAGCTCGCGAACTGGTCATCCCGCAATCGGTTTATCCCCGCTCGCGCGGGGAACACCAGCCTCATAGCCGAGGCGGCGGATCGTGTCGCGGTTTATCCCCGCTCGCGCGGGGAACACTTGGCGCGTTTATTCCAGGACGCGTAGTCGCGCGGTTTATCCCCGCTCACGCGGGGAACACTCATCCGCATCGAGTGAGCCGCCTGATGGCGGCGGTTTATCCCCGCTCACGCGGGGAACACGCCATTTCTTCGCTGGTATCGGCGTCTGGTCTCGGTTTATCCCCGCTCACGCGGGGAACACTTTGACCCGTGCCTCCAGTTGATTTACACGTTCGGTTTATCCCCGCTCGCGCGGGGAACACGACAATCTTCTGCACACGCTCATCGACAAAAGCGGTTTATCCCCGCTCGCGCGGGGAACACATTGACCACATCCAGATCCGCAACGCGACCGTCGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_017933|13|1|3139749-3140265|PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCAGAAAGCTCGCGAACTGGTCATCCCGCAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAGCCTCATAGCCGAGGCGGCGGATCGTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TTGGCGCGTTTATTCCAGGACGCGTAGTCGCG
CGGTTTATCCCCGCTCACGCGGGGAACAC	TCATCCGCATCGAGTGAGCCGCCTGATGGCGG
CGGTTTATCCCCGCTCACGCGGGGAACAC	GCCATTTCTTCGCTGGTATCGGCGTCTGGTCT
CGGTTTATCCCCGCTCACGCGGGGAACAC	TTTGACCCGTGCCTCCAGTTGATTTACACGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GACAATCTTCTGCACACGCTCATCGACAAAAG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATTGACCACATCCAGATCCGCAACGCGACCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_017933|13|13|3139749-3140265|CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCAGAAAGCTCGCGAACTGGTCATCCCGCAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAGCCTCATAGCCGAGGCGGCGGATCGTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TTGGCGCGTTTATTCCAGGACGCGTAGTCGCG
CGGTTTATCCCCGCTCACGCGGGGAACAC	TCATCCGCATCGAGTGAGCCGCCTGATGGCGG
CGGTTTATCCCCGCTCACGCGGGGAACAC	GCCATTTCTTCGCTGGTATCGGCGTCTGGTCT
CGGTTTATCCCCGCTCACGCGGGGAACAC	TTTGACCCGTGCCTCCAGTTGATTTACACGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GACAATCTTCTGCACACGCTCATCGACAAAAG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATTGACCACATCCAGATCCGCAACGCGACCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_017933|13|1|3139749-3140265|CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCAGAAAGCTCGCGAACTGGTCATCCCGCAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAGCCTCATAGCCGAGGCGGCGGATCGTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TTGGCGCGTTTATTCCAGGACGCGTAGTCGCG
CGGTTTATCCCCGCTCACGCGGGGAACAC	TCATCCGCATCGAGTGAGCCGCCTGATGGCGG
CGGTTTATCCCCGCTCACGCGGGGAACAC	GCCATTTCTTCGCTGGTATCGGCGTCTGGTCT
CGGTTTATCCCCGCTCACGCGGGGAACAC	TTTGACCCGTGCCTCCAGTTGATTTACACGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GACAATCTTCTGCACACGCTCATCGACAAAAG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATTGACCACATCCAGATCCGCAACGCGACCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_007865291.1\|3140654_3141572_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_017933.1\|WP_007865293.1\|3140361_3140655_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_017933.1\|WP_014729420.1\|3135540_3136158_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NC_017933.1\|WP_004386082.1\|3150562_3151423_+\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|182519
NC_017933.1\|WP_014729425.1\|3144047_3144653_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_017933.1\|WP_014729421.1\|3139184_3139643_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NC_017933.1\|WP_007781449.1\|3138041_3138263_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014729427.1\|3146582_3149216_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_017933.1\|WP_014729417.1\|3131494_3132286_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NC_017933.1\|WP_012125458.1\|3132282_3132942_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NC_017933.1\|WP_004386081.1\|3149764_3150337_-\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668
NC_017933.1\|WP_014729422.1\|3141568_3142219_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_017933.1\|WP_007706073.1\|3149421_3149733_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NC_017933.1\|WP_014729426.1\|3144653_3146216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_017933.1\|WP_004386921.1\|3136244_3137666_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_017933.1\|WP_014729418.1\|3133107_3134664_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NC_017933.1\|WP_014729419.1\|3134656_3135484_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_017933.1\|WP_157999872.1\|3135398_3135578_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014729424.1\|3142962_3144036_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_017933.1\|WP_004386923.1\|3138259_3138511_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_007865291.1\|3140654_3141572_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.06072e-155
NC_017933.1\|WP_012125458.1\|3132282_3132942_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	6.02339e-102
NC_017933.1\|WP_014729420.1\|3135540_3136158_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	1.56449e-36
NC_017933.1\|WP_004386082.1\|3150562_3151423_+\|acyl-CoA-thioesterase-II	gnl\|CDD\|182519	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional.	0
NC_017933.1\|WP_014729425.1\|3144047_3144653_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.21643e-26
NC_017933.1\|WP_014729421.1\|3139184_3139643_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	2.83947e-09
NC_017933.1\|WP_014729427.1\|3146582_3149216_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.37791e-109
NC_017933.1\|WP_014729417.1\|3131494_3132286_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	1.26751e-144
NC_017933.1\|WP_004386081.1\|3149764_3150337_-\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	4.07934e-53
NC_017933.1\|WP_014729422.1\|3141568_3142219_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	3.08471e-71
NC_017933.1\|WP_007706073.1\|3149421_3149733_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.30568e-48
NC_017933.1\|WP_014729426.1\|3144653_3146216_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.19283e-144
NC_017933.1\|WP_004386921.1\|3136244_3137666_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.68309e-94
NC_017933.1\|WP_014729418.1\|3133107_3134664_+\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NC_017933.1\|WP_014729419.1\|3134656_3135484_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.77295e-15
NC_017933.1\|WP_014729424.1\|3142962_3144036_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.73069e-119
NC_017933.1\|WP_007865293.1\|3140361_3140655_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.72849e-66

>NC_017933.1|WP_014729421.1|3139184_3139643_-|DUF3828-domain-containing-protein
MNKTICTLLITAALCSTTAVASDETLEQKPQQAALNFNRWYISGFQNTHQDLLDSKQIRHYVTKTTLEKLRRARPNENEFYDADFFIKAQDILPDWTSHIVITDVEYDPVCTQVYVSFGQNPTHGVIDCMVKEAGIWKVESVARMPMAKGKP
>NC_017933.1|WP_004386923.1|3138259_3138511_-|hypothetical-protein
MTAAVLNVKIDTDLKEKLRQYAEQHGETLSAATEKLLQKALVLGEEDDVVNSEEIDSQHTEEDVSPLSVKEIKALRKLLKKRK
>NC_017933.1|WP_007781449.1|3138041_3138263_-|hypothetical-protein
MKDASLSTTAATYREACELLRSGYVKHVRLGWDVGSDEFFRIASDWCDAGAKIKKEGDAFVISLKGFPVPRQH
>NC_017933.1|WP_004386921.1|3136244_3137666_+|PLP-dependent-aminotransferase-family-protein
MNHRRTGTASLLRLLGHWQQAHSRLPVYRQLAQALRLIILDGRLPLASRLPGERELAGALGVSRTTIASALGLLRDEGFLISRHGAGSEIALPASASVPTLTGSGGALDLSTAALSAGPEVLAACQRAVAQLPDYLGHTGYDPQGLLRLRETLAARYSARGLPTSPDQVMLVNGAVSGFALVLRLLTGPGDRVVIDNPTYPLAIAAIRGASCRPVSVALASQGWDPDGLAATFAQTSPRLAYLIPDYHNPTGYCMDAATRERIAAAATASRTTLVVDETMVDLWYEEAPPPPLAAFDAQDTVITLGSAGKSFWGGLRLGWIRASTRTIASLIQMRDTLDLGSPLLEQLAVATLIEDAPHFLPPRRTALKARRDACLDAMQRYFPQWRTSLPQGGLSFWVELPRPLATRFAASAEGLGIHLGAGNRFGVEGAFERFLRMPFTLETERLEEAFSRLQPLWHQLMETRASTARGLV
>NC_017933.1|WP_014729420.1|3135540_3136158_-|membrane-protein
MWRRLVQLYVGLSLYGVSTAMFVRADLGTDPWNVFHVGLARLLSLNLGAVIIGVGALVLLLWVPLRQKPGLGTISNVIMIGLAADAALAVLPAPSSLALRGGLLVAAVVLNALATGMYIGAGFGAGPRDGLMTGIHARTGWSVRSIRTAIEITVLLAGWAMGGTPGIGTVVYALAIGPLIQLCLPWFLVRRVKPAAPAVAAAEKG
>NC_017933.1|WP_157999872.1|3135398_3135578_-|hypothetical-protein
MPHRPWQPLKKDRSSFCRAALCWVFSPMRNGHVEPCSLTRAASAALEQRSAGLNTVPLF
>NC_017933.1|WP_014729419.1|3134656_3135484_-|GNAT-family-N-acetyltransferase
MSNPAALHARPALHWSSEALASILCRCFDGYLVPFQLDGAAFAYRFGAENVCLNASRVWLAGEQVVALALIARRGWRSRLAAFAIHPDWRGKGVGKTLMMQLLDEAHERGEKSMTLEVIVGNDAGQALYERVGFTCEKTLVGFQAHSPAAFVNTQALMPCDPHDIAQRMAAQAEDLPWLMAPETAQALPGTGFSLDDKAFAIIATGFAQPQLRALWVAPQARREGRARQLLSLLHERFAGLMTPVAVDQRLAPLFEQSGFRIQPVRQYEMRHRLN
>NC_017933.1|WP_014729418.1|3133107_3134664_+|EAL-domain-containing-protein
MTITRRIKIVTGVLLLSVLLPVAFSFWLARHQAEQHFVMELDAYTERTLIRTNDIMQQAKAALAKINSFTGEPCSEAHLQAMRRTSFVFRHVQEVVYLKDMTPVCSSLVGRSTSKPLPTPTWVNDENYKIWFSTQNDIGLSIPMVMVAHGPHMVLIDPSSFIDLIPFSAWPINTAIIGLPRNRVLASSGPFDKTVWNMARKSGAQKIEYQGNIYLIHREPRSGIAVVAWASQAPQTAEIRKLQLIWLPAGILISLALAFWLLRLLRRLQSPRYRLQDGIANNELVMHYQPIIRLSNGQPTGAEALIRWPQPDGSMLTPDIFIPLAEQTGLIGPLTRRIVHNVLDDLGDWLRTHPQQHISINISAFDLHDPQFVDMFSQALAQHGVAPHQLALEITERGFADPALSGPIIARLRAAGHKIYIDDFGTGYSSLSYLEDLDVDILKIDKSFVDALEYKTVTPHIIEMAKTLKLEMVAEGVENQSQALWLREHGVQYAQGWLYSKALPAGEFIAWCGRHGVS
>NC_017933.1|WP_012125458.1|3132282_3132942_+|ABC-transporter-permease
MSFEDLWPLLAQGTLETLYMVGLAALFTVLIGLPVGVVLFITRRDGVLPQPQLNSVLGSVINVGRSLPFIVLLIALIPLTRLIIGTTLGSTAAVVPITIGAFPFFARVVENALDEVDRGRAEAIIAMGGNAWHVISKALLPEALPALLSGVTLTVVMLIGFSSMAGVIGGGGLGDLAIRYGYQRFNNEVMAATVLILVALVQGVQTLGDRLVRRLAHRR
>NC_017933.1|WP_014729417.1|3131494_3132286_+|ATP-binding-cassette-domain-containing-protein
MITLDGLSKTYAGEGHPALDDVSLAIPQGAVYGILGRSGAGKSTLLRCLNLLERPTSGRILMNGVDITRLDDRALRQHRQRTAMVFQHFNLLHARTVEDNVAVPLEIAGVPRAARRERVAELLALVGLADKADAFPSRLSGGQKQRVGIARALAARPDVLLCDEATSALDPETTASILALLADINRQLGLTIVLITHELEVVKAICDHAALLENGRLVESGRLADLLTAPWSVLRQTLVRDNAAWQAFLRRHGVEERIWCEVA
>NC_017933.1|WP_007865293.1|3140361_3140655_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLELRAGVYVGDVSRRVREMIWHQITELAEEGNVVMAWATNNESGFDFQTFGVNRRIPVDLDGLRLVSFLPLENQ
>NC_017933.1|WP_007865291.1|3140654_3141572_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSFVPLNPIPLNDRTSMIFLQYGHLDVLDGAFVLVDKTGVRTHVPVGAIACIMLEPGTRVSHAAIRLASQVGTLLVWVGEAGVRLYASGQPGGARADKLLYQAKLALDETLRLKVVRKMYELRFGEPPPARRSVEQLRGIEGARVRQTYALLAKRYGVKWNGRRYDPKDWEKGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDAVVPKAFEIAARHPEQPDRDVRLACRDIFRSEKLTGKLIPLIETVLAAGEIEPPQPAADMLPPAIPQADSLAEAGFRSR
>NC_017933.1|WP_014729422.1|3141568_3142219_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKITLPTARLTPERLMEMMARGEYVMHQWLWELFPGVAQRQYLYRRETLQNGFCFYLLSASAPERTHPLFEIQMRPFAPALDEGTALRFSLRANPVVTRNGKRHDVLMNAKREWQLNQKQGALWTMQEQAALAWLDAQGEKGGFRLSQACVAAYRQQQVVKKRGELIQFSTVDYEGALIVTDPARFIARLHEGFGKCRAFGCGLMLIKPGDGV
>NC_017933.1|WP_014729424.1|3142962_3144036_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVTIGGAPRLRVSSQSLKRAWRTSELFEAALGGHIGTRTARIGREAAEIMLAGGVAQAKAVEWGGAIAACFGKVKSEKDKNRLEKDPLINTETEQLAHVSPTERESVHALAHTLAQEKRAPTKEELNFLRKDAMAVDIALFGRMLASTPEHNIEAACQVAHAFGVSETLMEDDFFTAVDDLRQAAAEDAGAGHIGELGFGSALFYTYLCIDRDRLLENLNGDEQLMAKTLRALGECTLKISPTGKQNSFASRAYASWALAEKSTEQPRSLAAAFWEPVTGHDQLDEAVRRITTLRDNMNKVYGGGATPCAVLYGDKGEGSVAQLLDFISA
>NC_017933.1|WP_014729425.1|3144047_3144653_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSILSQAHRESLLKWHALMNEQQGRRLRASLRRSHTLNEVWLSEGFRSLAARVPTLWNVAGREWRFCALGIVAALAAHVKTVDTRASFAEQLGHKESNHAVMSELRFRRLSQARTQEELFRQLRHAVQLLRGVVNLADLAEGVFRWCSEEDERERHAARRRAPTDYIRVRWALDYYMAGNPSDAPDAENTDLPAASATTQE
>NC_017933.1|WP_014729426.1|3144653_3146216_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSSLITTKWLPVIYRDGTRGKIAPLDLADENILDLILPRPDFQGAAWQFLLGLLQTALAPKDAESWEDIWEDGLTAEAIRNALAPLEKLFEFGPGTPSFMQDFEPLDGESVALAQLLPETPGAQTLKLNKDHFIKRGTTEKFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLLELHRYQGERAALWRRLWLNVLPQREGRLPRPASYDARVFPWLAPTRTSEKAIVTPEQADALQAYWGVPRRIRIDFSATQPGTCDLCGGPGDALLTSMTVKNYGVNYVGWMHPLTPHRIPKKEGGEMFSVKGQPGGLLWRDWLGLMMESESDNNREQPARIVKIRQQKPLPGAETGLWCFGYDFDNMKARCWYEHHLPFLQLPESQQPFIRQTLSDAARVASLMLSKLRSALKEAWFGEGATVRGDFSFIDIDFWQQTQPRFLELVEAAKADTTGDNRALLSAWNSDVWRYTRRYFDDHALTSPQERTEFADIMKARKKFFTQAKAKPAAKGARAKKTQEAN
>NC_017933.1|WP_014729427.1|3146582_3149216_-|CRISPR-associated-helicase/endonuclease-Cas3
MSGYLYWGKSRKGENHQGDDYHLLQWHSLDVAACGYVMVMENHFNAASLFATLGLDDRETAATFFAWLLCWHDIGKFARLFQQQYGCDALACGLRDVSDSRHHHIVTGLWLWQNHLGDCVAQGMTGPLSARERKRVLDRWMPAVIGHHGKPVSCENCHNDFLPEDIAAARAFAGAVNALFPAVALQAQWKDDNWREAFPEKSWLVSALTVLADWTGSANLHFPWVAHAMPFEVYWARAVKQAQRALRLLPPASDVAPFNGIETLFPFITAPTPLQQKALEIDLHAKGPHLIILEDVTGAGKTEAALVLAHRLMAAGQARGLYIGLPTMATANAMYARMSQAWLRLYREGSHPSLVLAHSARKLSAGFNASIWARELLPNDSGDEAAAYEGCAAWFAQSPKKALLAETDVGTLDQAMMAVMAFKHQNLRLLGLNDKVLIADEIHSYDAYMSHVVEKLVETRARYGNATILLSATLSQAQRDRLIAAFYKGLNTTRESPRLGPDDYPWITHLHAQGIDGQRVATRAQVQRRVGIGWMEDEAACLDKIEVVAREGGCIGWIRNSVDDAVNSYRELIRHGNIPEENIILFHSRFAFIDRNNKEETTLEWFGKESAVNRSGKVIISTQVIEQSIDIDLDYLISDLAPVDLLIQRAGRLQRHSRDKQGQLKLTGADERPAPWLDILAPRWQAQPDEKWLTSAMRNTSYVYPAHSRLWLTQRVLREQGEIRMPEAARLLIEAVYGEEIDVPEGMKRSEDAALADYYCQRAIAGKYEISLDVGYSVESAELWGPDVSTRIGELTIDLWLARDTPQGIMPYAQGDNAWEMSALRVRKSWWNKHRGEFALLCGEALSQWCSAQRKPEAVVILLPGGYSAKEGLIGEV
>NC_017933.1|WP_007706073.1|3149421_3149733_+|MGMT-family-protein
MDNQDTFPQRVYQIVAAIPEGCVTTYGEVARLAGSPRAARQVGGVLKRLPEGSRLPWHRVVNRRGEISLTGPDLQRQRQALLAEGVQVSGKGEIDLARYGWRY
>NC_017933.1|WP_004386081.1|3149764_3150337_-|YbaY-family-lipoprotein
MKLVHMLSGLAVAVALAGCAQDKSADIAVPAPNPNTSGVATKPVIKQPNVSGTVWIRQKVALPPDAVLTVTLSDATQANAPSKVLAQKVVRTEGKQAPFSFVLPFNPSDIQPNARVLLSAAITVKDKLVFITDRVQPAVNEGGTKIDLTLVPVQQTAVPVQSGGGAVTSVPSTSPTQVTPSSAVPAPTTY
>NC_017933.1|WP_004386082.1|3150562_3151423_+|acyl-CoA-thioesterase-II
MSQALSNLLALLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKATVPEERLVHSFHSYFLRPGDSQKPIVYDVEVLRDGNSFSARRVAAIQNGKPIFYMTASFQAPESGFEHQKPMPPAPAPDGLKSETEIARSLAHLLPPQVKDKFLCDKPLEIRPVEFHNPLKGHTAKPERQVWMRANGQMPDEVRVHQSLLGYASDFNFLVVALQPHGVGFLEPGMQVATIDHSMWFHRPFDMNQWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRKRG

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Crispr_ID: NC_017933_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_14

3166686-3167631

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAAC	CRT
GGTTTATCCCCGCTCGCGCGGGGAACAG	PILER-CR

15 spacers

The CRISPR arrays of NC_017933_14

>merge|NC_017933|14|3166686-3167631|CRISPRCasFinder,CRT,PILER-CR
GGAGTTATTCCTGCTGGCGCGGGGAACGGACCAGCACAGATTGCGCGGTTTTCTCAAGGTACGGTTTATCCCCGCTCGCGCAGGGAACGGGCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTTCGGTTTATCCCCGCTCGCGCGGGGAACAGACATCCGAACTGACACAGCTCATGCGCGGCGACGGTTTATCCCCGCTCACGCGGGGAACGGTTCCAGATAACAACTTTCCAGTTTGTCTGCTTCGGTTTATCCCCGCTCGCGCGGGGAACGGGGTAAGCCCGTTAATCGCATCCACATCATGCCCGGTTTATCTCCGCTCGCGCGGGGAACAGTTAACCTGCGCTGCTGTGATTGGCGTGATAGCCGGTTTATCCCCGCTCGCGCGGGGAACAGTGGGGGCCGCACCGGCACCACTCCATAGCACCCGGTTTATCCCCGCTCGCGCGGGGGAACAGAAATTTAAAGTTTGGCTGGATTCCGGTGCCAACGGTTTATCCCCGCTCGCGCGGGGAACAGGTCCACCTCCCAATTTGAGTCGTTATAATTCGAGGTTTATCCCCGCTCGCGCGGGGAACAGGCGTTCTGCGGTCATTAACGTGCGCGCCACATCGGTTTATCCCCGCTCGCGCGGGGAACAGCAAATCCCCTGGTCTCAGGGAGGGACCTGGCGCGGTTTATCCCCGCTCGCGCGGGGAACAGAAAGCCCGTCGTAAGACGGGTTTTGCTAACAACGGTTTATCCCCGCTCGCGCGGGGAACAGGGTAAGTGGCAATTGCTCAGGTGAAAACGAGGCGGTTTATCCCCGCTCGCGCGGGGAACAGCTTATCTAAATCCACGAAACCGGCAATCGGTACGGTTTATCCCCGCTCGCGCGGGGAACAGTAGCTTGCGGGTTGAACAAAGCTGCAAATATTCGGTTTATCCCCGCTCGCGCGGGGAACGG

>NC_017933|14|14|3166686-3167631|CRISPRCasFinder
GGAGTTATTCCTGCTGGCGCGGGGAACGG	ACCAGCACAGATTGCGCGGTTTTCTCAAGGTA
CGGTTTATCCCCGCTCGCGCAGGGAACGG	GCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACATCCGAACTGACACAGCTCATGCGCGGCGA
CGGTTTATCCCCGCTCACGCGGGGAACGG	TTCCAGATAACAACTTTCCAGTTTGTCTGCTT
CGGTTTATCCCCGCTCGCGCGGGGAACGG	GGTAAGCCCGTTAATCGCATCCACATCATGCC
CGGTTTATCTCCGCTCGCGCGGGGAACAG	TTAACCTGCGCTGCTGTGATTGGCGTGATAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGGGGGCCGCACCGGCACCACTCCATAGCACC
CGGTTTATCCCCGCTCGCGCGGGGGAACA	GAAATTTAAAGTTTGGCTGGATTCCGGTGCCAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTCCACCTCCCAATTTGAGTCGTTATAATTCG
AGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGTTCTGCGGTCATTAACGTGCGCGCCACAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CAAATCCCCTGGTCTCAGGGAGGGACCTGGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AAAGCCCGTCGTAAGACGGGTTTTGCTAACAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGTAAGTGGCAATTGCTCAGGTGAAAACGAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTTATCTAAATCCACGAAACCGGCAATCGGTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCTTGCGGGTTGAACAAAGCTGCAAATATT
CGGTTTATCCCCGCTCGCGCGGGGAACGG

>NC_017933|14|2|3166686-3167629|CRT
GGAGTTATTCCTGCTGGCGCGGGGAAC	GGACCAGCACAGATTGCGCGGTTTTCTCAAGGTA
CGGTTTATCCCCGCTCGCGCAGGGAAC	GGGCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTT
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGACATCCGAACTGACACAGCTCATGCGCGGCGA
CGGTTTATCCCCGCTCACGCGGGGAAC	GGTTCCAGATAACAACTTTCCAGTTTGTCTGCTT
CGGTTTATCCCCGCTCGCGCGGGGAAC	GGGGTAAGCCCGTTAATCGCATCCACATCATGCC
CGGTTTATCTCCGCTCGCGCGGGGAAC	AGTTAACCTGCGCTGCTGTGATTGGCGTGATAGC
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGTGGGGGCCGCACCGGCACCACTCCATAGCACC
CGGTTTATCCCCGCTCGCGCGGGGGAA	CAGAAATTTAAAGTTTGGCTGGATTCCGGTGCCAA
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGGTCCACCTCCCAATTTGAGTCGTTATAATTCG
AGGTTTATCCCCGCTCGCGCGGGGAAC	AGGCGTTCTGCGGTCATTAACGTGCGCGCCACAT
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGCAAATCCCCTGGTCTCAGGGAGGGACCTGGCG
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGAAAGCCCGTCGTAAGACGGGTTTTGCTAACAA
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGGGTAAGTGGCAATTGCTCAGGTGAAAACGAGG
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGCTTATCTAAATCCACGAAACCGGCAATCGGTA
CGGTTTATCCCCGCTCGCGCGGGGAAC	AGTAGCTTGCGGGTTGAACAAAGCTGCAAATATT
CGGTTTATCCCCGCTCGCGCGGGGAAC

>NC_017933|14|2|3166748-3167631|PILER-CR
GGTTTATCCCCGCTCGCGCAGGGAACGG	GCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTTC
GGTTTATCCCCGCTCGCGCGGGGAACAG	ACATCCGAACTGACACAGCTCATGCGCGGCGAC
GGTTTATCCCCGCTCACGCGGGGAACGG	TTCCAGATAACAACTTTCCAGTTTGTCTGCTTC
GGTTTATCCCCGCTCGCGCGGGGAACGG	GGTAAGCCCGTTAATCGCATCCACATCATGCCC
GGTTTATCTCCGCTCGCGCGGGGAACAG	TTAACCTGCGCTGCTGTGATTGGCGTGATAGCC
GGTTTATCCCCGCTCGCGCGGGGAACAG	TGGGGGCCGCACCGGCACCACTCCATAGCACCC
GGTTTATCCCCGCTCGCGCGGGGGAACA	GAAATTTAAAGTTTGGCTGGATTCCGGTGCCAACGGTT
TATCCCCGCTCGCGCGGGGAACAGGTCC	ACCTCCCAATTTGAGTCGTTATAATTCGAGGTT
TATCCCCGCTCGCGCGGGGAACAGGCGT	TCTGCGGTCATTAACGTGCGCGCCACATCGGTT
TATCCCCGCTCGCGCGGGGAACAGCAAA	TCCCCTGGTCTCAGGGAGGGACCTGGCGCGGTT
TATCCCCGCTCGCGCGGGGAACAGAAAG	CCCGTCGTAAGACGGGTTTTGCTAACAACGGTT
TATCCCCGCTCGCGCGGGGAACAGGGTA	AGTGGCAATTGCTCAGGTGAAAACGAGGCGGTT
TATCCCCGCTCGCGCGGGGAACAGCTTA	TCTAAATCCACGAAACCGGCAATCGGTACGGTT
TATCCCCGCTCGCGCGGGGAACAGTAGC	TTGCGGGTTGAACAAAGCTGCAAATATTCGGTT
TATCCCCGCTCGCGCGGGGAACGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_007865247.1\|3159205_3159643_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_004387731.1\|3176319_3177618_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_017933.1\|WP_041460889.1\|3165733_3166570_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NC_017933.1\|WP_004387729.1\|3173997_3175272_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NC_017933.1\|WP_014729430.1\|3157764_3158811_+\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NC_017933.1\|WP_004387554.1\|3157187_3157649_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_017933.1\|WP_004387733.1\|3177968_3178286_-\|transcriptional-regulator-BolA	unknown	unknown	gnl\|CDD\|183243
NC_017933.1\|WP_014729436.1\|3167844_3168243_-\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|129161
NC_017933.1\|WP_014729432.1\|3162363_3163182_-\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NC_017933.1\|WP_014729429.1\|3155354_3157130_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NC_017933.1\|WP_004387734.1\|3178584_3179163_+\|lipoprotein	unknown	unknown	gnl\|CDD\|183242
NC_017933.1\|WP_014729438.1\|3168881_3170759_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NC_017933.1\|WP_004387728.1\|3171456_3173811_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|182730
NC_017933.1\|WP_004387730.1\|3175395_3176019_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_017933.1\|WP_014729434.1\|3165045_3165741_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NC_017933.1\|WP_014729437.1\|3168366_3168735_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|129520
NC_017933.1\|WP_007847954.1\|3161769_3162324_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_004387727.1\|3170974_3171247_-\|DNA-binding-protein-HU-beta	unknown	unknown	gnl\|CDD\|259853
NC_017933.1\|WP_014729428.1\|3153583_3155362_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733
NC_017933.1\|WP_014729433.1\|3163273_3165016_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_004387731.1\|3176319_3177618_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NC_017933.1\|WP_041460889.1\|3165733_3166570_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.57392e-123
NC_017933.1\|WP_004387729.1\|3173997_3175272_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_017933.1\|WP_014729430.1\|3157764_3158811_+\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	3.34768e-107
NC_017933.1\|WP_004387554.1\|3157187_3157649_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.6465e-50
NC_017933.1\|WP_004387733.1\|3177968_3178286_-\|transcriptional-regulator-BolA	gnl\|CDD\|183243	PRK11628, PRK11628, transcriptional regulator BolA; Provisional.	2.56413e-75
NC_017933.1\|WP_014729436.1\|3167844_3168243_-\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|129161	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General].	7.32904e-45
NC_017933.1\|WP_014729432.1\|3162363_3163182_-\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	0
NC_017933.1\|WP_014729429.1\|3155354_3157130_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NC_017933.1\|WP_004387734.1\|3178584_3179163_+\|lipoprotein	gnl\|CDD\|183242	PRK11627, PRK11627, hypothetical protein; Provisional.	3.11964e-134
NC_017933.1\|WP_014729438.1\|3168881_3170759_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	0
NC_017933.1\|WP_004387728.1\|3171456_3173811_-\|endopeptidase-La	gnl\|CDD\|182730	PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional.	0
NC_017933.1\|WP_004387730.1\|3175395_3176019_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.88422e-159
NC_017933.1\|WP_014729434.1\|3165045_3165741_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NC_017933.1\|WP_014729433.1\|3163273_3165016_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NC_017933.1\|WP_004387727.1\|3170974_3171247_-\|DNA-binding-protein-HU-beta	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	3.94727e-45
NC_017933.1\|WP_014729428.1\|3153583_3155362_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0
NC_017933.1\|WP_014729437.1\|3168366_3168735_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|129520	TIGR00426, Hypothetical_protein_ybaV_precursor., competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation].	1.36085e-26

>NC_017933.1|WP_041460889.1|3165733_3166570_-|MBL-fold-metallo-hydrolase
MRVHHLNCGCMCPLGGALYDGFSKGLHAHLICHCLLIETDHHGLVLVDTGFGCDDMRHPRRRLPLFFRALNNIQYRESLTALHNIKALGFKPEDVRHIVLTHLDFDHAGGLSDFPQAQVHLMQREMTAAEGRGTWLDSARYRPGQWGNRSGWHGYHPHGEAWFGFSAVRALDGLPPEILLIPLPGHTEGHAGVAIDTPQGWLLHGGDAWFYRDEMAADPHCTPGLRFYQWMMQKDKAARLANQKRLRLLAADASAGVTLFCSHDAREFERLSGKNLAI
>NC_017933.1|WP_014729434.1|3165045_3165741_+|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLIQALHQYDEVHCVTFDYGQRHRAEIDVASALAASLGSRAHKVLDVTLLNELAVSSLTRDSIPVPDYDPDAEGLPSTFVPGRNILFLTLASIYAYQVQAEAVITGVCETDFSGYPDCRDEFVKALNHAVALGMARDVRFETPLMWLNKAETWALADYWGKLDVIRHQTLTCYNGIQGDGCGECAACHLRANGLSQYQADKPAIMAAMKQKTGLK
>NC_017933.1|WP_014729433.1|3163273_3165016_+|SgrR-family-transcriptional-regulator
MRLLNRLNQFQRLWQPSEGAPQAVTISELAARCFCSERHMRTLLRQLEQHGWLRWRAQSGRGKRGELIFLVSPHTVRASMMETVLSQGQTHNALGLAQLASGQLRQLLHPFLGGQWHNDTPTLRIPYYRPLEPLKPGFLPGRAEQHLARQIFSGLTRFNPHTARPEGDMAHHWSVSPDGLSWRFFLRPTLHWHNHEPVDAWQLRQRLQQLLELETLRQLFASVREITVEHKHCLRFELTRPDHWLAWRLASHGCYLAHPDDTTIGSGPFRLATFTPELVRIESHDRCHLEHPLLNAVEYWITPGLFDSALGTSCRHPVQIAIGQQEELVHLRPVSNSISLGFCYLGIRQNGRLSHAQARWLMQRVHRSGMIDSLPLDEHLITPSSELLPGWHLPQWPDEPPPPLPPSLPPSLTLVYHLPVELPVMARQLQHELAQRGCTLTLHFHNAKNWDGCTQLAQADIVMGDRLIGEAPEYTLEQWLRCDPLWRHLLTGPQRAHLEATLDAVQSHPDEQSRHAALREVWQTLMHDAVITPLFNYRYQISAPPGVNGIELNTLGWFDFSRAWLPPPQEAGGRGGAALP
>NC_017933.1|WP_014729432.1|3162363_3163182_-|HMP-PP-phosphatase
MARLAAFDMDGTLLMPDHQLGEATQMALHRLHQRGVTLAFATGRHLLEMRQMLQKIALEAFLITGNGTRIHAPSGELLFAEDLSPQVAEAVLHGYWDTSASLHVFNDSGWLTDNDDPALLDAHAWSGFRYQLTDLKRLPAHQVTKICFVADHDALCELRVKLCQTLGSQAHICFSALDCLEVLPPGCNKGAALQALSQHLGITMADCMAFGDAMNDREMLSLAGKGLIMGNAMPQLLAELPHLPVIGHCSRQAVAHYLTHWLDHPHLDYSPE
>NC_017933.1|WP_007847954.1|3161769_3162324_+|hypothetical-protein
MFSRLVQKSMDQMADLGIKTNLPILLAGIKDGLAQKVAVEPKTLLSLHESMLKELSSREEKKYQAGIDQLEKATAKKKLLKRNKSLFFVQAKAGKKAIAPGETVNVTFKEATYEGRVINNNANVPVTYDENLPYIFQQALELGKRGGVMEVYCFAGDLYNPDTMPPDLFNYSLMKLTVTISGGK
>NC_017933.1|WP_007865247.1|3159205_3159643_+|hypothetical-protein
MLDKKILYIAAMMMSLSACTTAPKSAPVKSNVSQTPVVPAQPAPTPVESMNQLAPVSSDTKLRLERCLAETKHLSDINREKYREQIDTLYRSIKATQYYASISNDLSNIMVETITPLYQFRVNDACNTISQSLLAELKKGAGLAK
>NC_017933.1|WP_014729430.1|3157764_3158811_+|PLP-dependent-cysteine-synthase-family-protein
MSSTWVHHAINEIHADARRSADTHLIRFTLPAFPGIWFYLKDESTHPTGSLKHRLARSLFLYGLSNGWIREGTPIIEASSGSTAVSEAWFARMLGLPFIAVMPACTARRKVEQIEFYGGRCHFVQSACEIYEASEVLARELRGRYMDQFTYAERATDWRGNNNIADSIFRQMAGEPHPVPDYIVMSAGTGGTSATIGRYLRYQGHATRLMVVDPENSVFYDYWQQRDSGLKSSVGSRIEGIGRPRVEPSFIPDVIDEMLQVPDAASVAAMQWLSELLGRKVGASTGTNMWGALQLAARMREEGQSGAIVTLLCDSGERYLETYHNPEWVAASIGDITPWRTAIQELVG
>NC_017933.1|WP_004387554.1|3157187_3157649_-|Lrp/AsnC-family-transcriptional-regulator
MLDKIDCRLLALLQEDATLSLQALADAVNLTTTPCWKRLRRLEDDGYIIKRVALLDPEKLGLGLTAFMLIKTQHHSSDWYSQFVAVVEEMPEVLGFWRMAGEYDYLMRVQVADMKSYDDFYKRLVNRVPGLSDVTSSFAMEQIKYTTALPLKR
>NC_017933.1|WP_014729429.1|3155354_3157130_-|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQLSWYFSREWRRYLGAVALLIVIAILQLVPPKVVGYVVDGVTQHHYTTRQVLLWVGLLVVIAIVVYLLRYVWRVLLFGASYQLAVELRRDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLVIMCTQISWQLTLLALLPMPVMAIVIKRYGDQLHHRFKAAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFSEDARDTGVKNLRVARVDARFDPTIYIAIGMANLLAIGGGSWMVMNGTLTLGQLTSFTMYLGLMIWPMLALAWMFNIVERGSAAYSRIRALLAEAPVVKDGQASLPAGRGVLNVAIREFRYPHAARDTLRNVQFTLKPGQMLGLCGPTGAGKTSVLSLIQRHFDLDAGEITFHDVSLARVHLDDWRGRLAVVNQTPFLFSDTVASNIALGKPDATQEEIEQAAKLACVHDDILRLPQGYDTQVGERGVMLSGGQKQRISIARALLLEAEILVLDDALSAVDGRTEHQILHNLRQWGENRTVIICAHRLSALTEASEILVLQHGQVAQRGRHEALAAQPGWYRDMYRYQQLEAALDDAPEENDEEALNA
>NC_017933.1|WP_014729428.1|3153583_3155362_-|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MRNTVKSWPTLKRLLAYGSPWRKPLGGAVLMLWVAAAAEVTGPALISYFIDNLVAKNQLPLGLVAGLAFAYVLLQILAAGLHYWQALLFNQAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAITIFPAVLIVMMIYQRYSTPIVRRVRTYLADINDGFNEVISGMNVIQQFRQQTRFGERMNAASHSHYLARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFTAIGTIQVGVLYAFISYLGRLNEPLIELTTQQSILQQALVAGERVFELMDRPRQDYGHDERPLTSGAIEVDNVSFAYRDDQLVLKDISLSVPSRHFVALVGHTGSGKSTLASLLMGYYPLSSGEIRLDGRPLASLSHGVLRKGVAMVQQDPVVLADSFFANVTLGRDIDEARVWEVLETVQLAELARGMSEGIHTRLGEQGNNLSVGQKQLLALARVLVDAPQILILDEATANIDSGTEQAIQHALAAIRPHTTLVVIAHRLSTIVEADTILVLHRGQAVERGSHQALLEARGRYRQMYQLQLAGEELQAAAKEEPLSA
>NC_017933.1|WP_014729436.1|3167844_3168243_-|YbgC/FadM-family-acyl-CoA-thioesterase
MQTQIKVRGYHMDVYQHVNNARYLEFLEEARWDGLENDESFKWMKANNIAFIVANININYRRPAVLGDLLTVTSQVKQLNGKSGVLSQVITLEPEGEVVADALITFVCIDLKTQKALPIEGELREKLEKITG
>NC_017933.1|WP_014729437.1|3168366_3168735_-|helix-hairpin-helix-domain-containing-protein
MKRGIKALCIAVALAGGTFCTAAIAAPSAGKAQAEPVKEKTAATTPQAKPETTADAPEETVSINTATADELAQAMNGVGKKKAQSIVSYREEYGPFKSIEDLKQVPGMGNSLVERNLSRIRL
>NC_017933.1|WP_014729438.1|3168881_3170759_-|peptidylprolyl-isomerase
MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIGGNSNYAAKVNDQEISRAQLENAVNIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQSIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKLDAAALAENASEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFATLAKEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKEKGQLSDVIKSSVGFLIVRLDDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAANNDNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVTDAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEEAQNLLSALKAGKGDEALKAAGIAFSPVKTFERTTQDTLTQPVFALPLPAKDKPSYGIGNDMQGNVVLLALDEVRSGTMPDAQKKAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDAGAPPQQ
>NC_017933.1|WP_004387727.1|3170974_3171247_-|DNA-binding-protein-HU-beta
MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN
>NC_017933.1|WP_004387728.1|3171456_3173811_-|endopeptidase-La
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDNDKKVMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDNGDHFAAKAEYLESPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLSDKQSVLEMSDINERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKENEINVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKRIEITGENLKDFLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINSDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPDENKRDLEEIPENVIADLDIHPVKRIEEVLTLALQNAPYGMQVATAK
>NC_017933.1|WP_004387729.1|3173997_3175272_-|ATP-dependent-protease-ATP-binding-subunit-ClpX
MTDKRKDSSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAIAKKAMSRKTGARGLRSIVEAALLETMYDLPSMEEVEKVVIDESVIAGQSEPLLIYGKPEAQQASGE
>NC_017933.1|WP_004387730.1|3175395_3176019_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYSDERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEAVEYGLVDSIMTHRN
>NC_017933.1|WP_004387731.1|3176319_3177618_-|trigger-factor
MQVSVETTQGLGRRVTITIAADSIENAVKSELVNVAKKVRIDGFRKGKVPMNVVAQRYGASVRQDVLGDLMSRHFVDAIIKEKINPAGAPNYVPGEYKLGEDFTYAVEFEVYPEVELKGLESIEVEKPVVEVTDADVDTMLDTLRKQQATWKDKDGAADAEDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEEGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRIKSQAIEGLVNANNIDVPAALIDGEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTHELKADEDRVKALIEEMASAYEDPSEVIEFYSKNNELMDNMRNVALEEQAVEAVLAKAKVTEKPTSFNELMNQQA
>NC_017933.1|WP_004387733.1|3177968_3178286_-|transcriptional-regulator-BolA
MMIREQIEEKLKAAFEPVFLDVVDESYRHNVPAGSESHFKVVLVSDRFVGERFLNRHRLIYGILSEELASTVHALALHTYTLKEWEGLQDTVLPSPACRGAGTLA
>NC_017933.1|WP_004387734.1|3178584_3179163_+|lipoprotein
MLKKVLFPLVALFMLAGCATPPTTIEVSPKITLPQQDPSLMGVTVSINGADQRQDQALAKVTRDNQLVTLTASRDLRFLLQEVLEKQMTSRGYMIGPSGAVDLQIIVNQLYADVSQGNVRYNIATKADISIIATAKTGNKMTKNYRASYSVEGAFQASNKNIADAVNSVLSDTIADMAQDTSIHEFIKQNAR

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Crispr_ID: NC_017933_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_15

3390761-3390882

Orphan

Consensus_repeat	Method
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_15

>merge|NC_017933|15|3390761-3390882|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACCTGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATCAGTCAAACTCCAGTTCCACCTGCTCTGAACC

>NC_017933|15|15|3390761-3390882|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	TGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATC
AGTCAAACTCCAGTTCCACCTGCTCTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014729552.1\|3383450_3383765_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NC_017933.1\|WP_014729553.1\|3383757_3385062_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NC_017933.1\|WP_004386134.1\|3403785_3404544_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182326
NC_017933.1\|WP_012125704.1\|3385573_3387712_-\|lysine-decarboxylase-LdcC	unknown	unknown	gnl\|CDD\|185297
NC_017933.1\|WP_007790874.1\|3396096_3396885_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_017933.1\|WP_014729557.1\|3401551_3402904_-\|sigma-E-protease-regulator-RseP	unknown	unknown	gnl\|CDD\|182723
NC_017933.1\|WP_014729550.1\|3381784_3382207_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_017933.1\|WP_014729551.1\|3382203_3382749_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NC_017933.1\|WP_004385445.1\|3382955_3383156_+\|YaeP-family-protein	unknown	unknown	gnl\|CDD\|179901
NC_017933.1\|WP_007896690.1\|3394361_3394958_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_017933.1\|WP_014729554.1\|3385126_3385516_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|183156
NC_017933.1\|WP_004386127.1\|3396888_3397344_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_017933.1\|WP_004386121.1\|3389786_3390746_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_017933.1\|WP_014729556.1\|3399106_3401521_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NC_017933.1\|WP_014729555.1\|3387859_3389623_-\|chitinase	unknown	unknown	gnl\|CDD\|381595
NC_017933.1\|WP_007776988.1\|3383142_3383403_+\|Rho-binding-antiterminator	unknown	unknown	gnl\|CDD\|183241
NC_017933.1\|WP_014729558.1\|3402915_3403773_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240
NC_017933.1\|WP_012125708.1\|3394954_3396097_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NC_017933.1\|WP_004386129.1\|3398489_3398984_-\|molecular-chaperone-Skp	unknown	unknown	gnl\|CDD\|182724
NC_017933.1\|WP_012125710.1\|3397460_3398486_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014729552.1\|3383450_3383765_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.95973e-31
NC_017933.1\|WP_014729553.1\|3383757_3385062_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	0
NC_017933.1\|WP_004386134.1\|3403785_3404544_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	gnl\|CDD\|182326	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase.	6.29229e-169
NC_017933.1\|WP_012125704.1\|3385573_3387712_-\|lysine-decarboxylase-LdcC	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
NC_017933.1\|WP_007790874.1\|3396096_3396885_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	6.58473e-173
NC_017933.1\|WP_014729557.1\|3401551_3402904_-\|sigma-E-protease-regulator-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	0
NC_017933.1\|WP_014729550.1\|3381784_3382207_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	9.96454e-71
NC_017933.1\|WP_014729551.1\|3382203_3382749_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	6.30284e-95
NC_017933.1\|WP_004385445.1\|3382955_3383156_+\|YaeP-family-protein	gnl\|CDD\|179901	PRK04964, PRK04964, hypothetical protein; Provisional.	4.322e-34
NC_017933.1\|WP_007896690.1\|3394361_3394958_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.48787e-115
NC_017933.1\|WP_014729554.1\|3385126_3385516_-\|VOC-family-protein	gnl\|CDD\|183156	PRK11478, PRK11478, VOC family protein.	7.56858e-95
NC_017933.1\|WP_004386127.1\|3396888_3397344_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.84423e-93
NC_017933.1\|WP_004386121.1\|3389786_3390746_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NC_017933.1\|WP_014729556.1\|3399106_3401521_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NC_017933.1\|WP_014729555.1\|3387859_3389623_-\|chitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	1.50743e-69
NC_017933.1\|WP_007776988.1\|3383142_3383403_+\|Rho-binding-antiterminator	gnl\|CDD\|183241	PRK11625, PRK11625, Rho-binding antiterminator; Provisional.	1.32493e-54
NC_017933.1\|WP_014729558.1\|3402915_3403773_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	0
NC_017933.1\|WP_012125708.1\|3394954_3396097_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NC_017933.1\|WP_004386129.1\|3398489_3398984_-\|molecular-chaperone-Skp	gnl\|CDD\|182724	PRK10780, PRK10780, molecular chaperone Skp.	6.45707e-82
NC_017933.1\|WP_012125710.1\|3397460_3398486_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	0

>NC_017933.1|WP_004386121.1|3389786_3390746_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLKVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSVIPEPLGGAHRNPEAMAQSLKTQLLADLADLDVLSKDDLLNRRYQRLMSYGYA
>NC_017933.1|WP_014729555.1|3387859_3389623_-|chitinase
MEIAKIAAIGAAGVLAGAQALAAPLLSSSTPYTLNASDLTKKEQELTNFPLMQSVKSAIRTLDNAQVEQIAPGRAANPDNVKRVEKILSAQDWEYLFPLRAPEYTYINFLKAVGKFPAVCGSYSDGRDADAICRKSLATMFAHFAQETGGHESWREQPEWRQALVYLREMGWSEGQKGGYNGECNPDTWQGQTWPCGKDKDGDYVSYFGRGAKQLSYNYNYGPFSDAMYGDVRPLLDKPEMVADTWLNLASAIFFFVYPQPPKPGMLHVIDGTWVPNEHDKENGLVPGFGVTIQIINGGVECGGDAENAQSLNRIAYYKEFAKYLKVPVPADEVLGCKKMKQFDAGEAGALPIYWEMDWSWSTTTPDGQAYACQLVGYQTPFSAFKEGDYAKCVQNHFNVNIVNDASGGTTPAPQPEPQPQPSPTPSGNVAPVARISGPVGAVESGSKVSLSATGSSDANGDALTYTWTAQNGQTLSGKDKSVVTFNAPESTSDAQYTISLKVDDGKLSDTTSYILNVKAKAKTPDAGPVSYPSWTASHSWKPGDIVLNQGALYQCKPFPAGGWCSVAPAYYEPGAGLNWQDAWNAL
>NC_017933.1|WP_012125704.1|3385573_3387712_-|lysine-decarboxylase-LdcC
MNIIAIMGPHGVFYKDEPMKELQAALQQQGFQLIWPKNSNDLLKFIEHNPRICGVIFDWDEYSLDLCCEINQLNEYLPLYAFINTHSTLDVSANEMRMALWFFEYSLGIADDIATRIRQYTQEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIIGMYAAHAGSTVLIDRNCHKSLTHLLMMSDIVPLWLKPTRNALGILGGIPKREFTRESIAQKVAQTPDASWPVHAVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYKGKSGMSGERVPGKVFFETQSTHKMLAALSQASLIHIKGDYDEETFNEAYMMHTTTSPSYPLVASIETAAAMLRGNPGRRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEIDEADCWPITPGDDWHGFTHADRDHMYLDPVKVTILTPGMDAQGNMEKEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLWAEDPDFYRNMRVQELAQGIHKLIQQHDLPDLMLRAFDVLPEMKMTPHEMYQQQVKGNVETVEIEKLIGRVSANMILPYPPGVPLVMPGEMITEDSRAVLDFLLMLCSIGRHYPGFETDIHGAKCGEDGVYRVRVLKSE
>NC_017933.1|WP_014729554.1|3385126_3385516_-|VOC-family-protein
MLGLKQIHHIAIIATDYHRSKAFYCDTLGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVDDVDTAVSFLESRGVTCEAVRVDPLTGKRFTFFNDPDGLPLELYQQ
>NC_017933.1|WP_014729553.1|3383757_3385062_-|tRNA-lysidine(34)-synthetase-TilS
MDTSLLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQALCHRWQVPFELAYVELAQDGSGLEAQARKARYQAFEAALLPGEALVTAQHLDDQCETLLLALKRGSGPAGLAAMPAELPFAGSVLLRPLLNTPRAQLEAWASRHQLVWLDDESNEDDRFDRNFLRLRILPALEARWPHFTQAAARSAQLCGEQEQLLDELLTPELAALMDGKTLAIAPLETMSALKRAALLRRWLAALNAAMPSRATLQRIWDEVAQSREDAAPRLKCGDYEARRYQGRLWWVRARQGQRQTMLAWPDPHEALPLPESLGCLRFGEAGDTVRPPRPGETVSVRFSAPGMLYIVGRDRGRTLKKLWQEFQVPPWQREITPILFYDEQPICAPGLFITREGQAQNEPGWSLAWHKEHNDD
>NC_017933.1|WP_014729552.1|3383450_3383765_-|cytochrome-c
MIKHSVWLASLMALSVTAQAKGDAAAGEEKAVMCVACHGASGKASAPIYPNLAGQNEAYLEHALQAYKKGERSGGQAEIMKAYVNGLSDEDIANLAAYYAGQKP
>NC_017933.1|WP_007776988.1|3383142_3383403_+|Rho-binding-antiterminator
MSMNDAYQPINCDDYDNLELACQHHLLLTLELKSGEVMKAKAQDLVTRKNVEYLIADEAGAVREVRLDKIASFSHPQIGTVVVSES
>NC_017933.1|WP_004385445.1|3382955_3383156_+|YaeP-family-protein
MDKYCELIRQRYSQIASGELGYIPDALGCVLRALNEVASDEALSESVREQAAYAAANLLVSDYVNE
>NC_017933.1|WP_014729551.1|3382203_3382749_-|YaeQ-family-protein
MALKATIYKAAVNVADLDRQQFLDINLTLARHPSETQERMMLRLLAWMMYADERLQFTRGLCADDEPEIWLRNDHLGIDLWIELGLPEERRLKKAVSQSQQVALFTYNDRAAQIWWQQNQDKLRQYKNLTIWYINDEQLAQLSALAQRTMTLQATLQEGVIWLSGAEQNLELLPTVWQAQA
>NC_017933.1|WP_014729550.1|3381784_3382207_-|aminoacyl-tRNA-hydrolase
MITFSRSVAVPDDEVTFSAIRAQGAGGQHVNKSSTAIHLRFDINASSLPDEWKARLLAASHHLITAEGVVVIKAQEYRSQEMNREAALARLVMLVRELTSTQKRRKETRPTRASKVRRLEAKTHKSATKALRGKVRGMPD
>NC_017933.1|WP_007896690.1|3394361_3394958_-|ribonuclease-HII
MMEFIYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLGRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPALPMPSMAVVKGDSRVAEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPVRRALGIAS
>NC_017933.1|WP_012125708.1|3394954_3396097_-|lipid-A-disaccharide-synthase
MTRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTERFTALKPDVFVGIDAPDFNITLEGNLKQQGIRTIHYVSPSVWAWRQKRVFKIGRATNLVLAFLPFEKAFYDKFNVPCRFIGHTMADAMPLDPDKNAARDVLGIAHDARCLALLPGSRSAEVEMLSADFLKTAQRLREHYPDLEIVVPLVNAKRREQFERIKAEVAPELTAHLLDGHAREAMIASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEFVSLPNLLAGRELVKELLQDDCEPQKLADALLPLLADGKQSHEMHDTFRKLHQQIRCNADEQAADAVLELAQ
>NC_017933.1|WP_007790874.1|3396096_3396885_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MIDKTAFIHPTAIVEEGAVIGANAHIGPFCIVGPDVKIGEGTVLKSHVVVNGHTTIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTAQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSKEALHAIRNAYKLLYRSGKTLDEVKPEIAEIAAKHPEVQPFYDFFARSTRGLIR
>NC_017933.1|WP_004386127.1|3396888_3397344_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTTETHTLHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMVMEVTFEKTRRGVTRFKGVALVDGKVVCEATMMCARSREA
>NC_017933.1|WP_012125710.1|3397460_3398486_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MPSIRLADLARQLDAELHGDGDIAITGVASMQSAQEGQITFMVNPRYREQLAHCQASAVVMTEADLPFANSAALVVKNPYLTYARMAQILDTTPQPASSIAPSAVIDASARLGNNVAVGANAVIESGVELGDNVVIGPGCFVGKNSKLGAGTRLWANVSIYHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDEMNKRLKAVERKVTQQD
>NC_017933.1|WP_004386129.1|3398489_3398984_-|molecular-chaperone-Skp
MKKWLFAAGLGLAMAASAQAADKIAVVNMGNLFQQVAQSTGVSKTLENEFKGRAGELQRMETDLQAKMQRLQRDGSTMKASERSKLEKDVMAGRQEFSSKAQQFEQDRARRSNEERGKLVTRIQSAVKKVAADQDIDLVVDANTVAYTSNDVKDITADVLKQVK
>NC_017933.1|WP_014729556.1|3399106_3401521_-|outer-membrane-protein-assembly-factor-BamA
MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFASGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIVGNRAFSTEELISNFQLRDEVPWWNVVGDRKYQKQKLQGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTINVTEGDQYKIAGVEVSGNLAGHSAEIESLTKMQPGELYNGTKVTRMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDSGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDVDTQRVSGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRLGLGYVHNDLSNMEPQVAMWRYLDSLGQSAKTTSDDNGFSADDFTLNYGWTYNHLDRGFFPTSGSRVNLNGKVTIPGSDNEFYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNNIGPKAVYYSGPGLDNCDKAVGGYCSSDDAVGGNAMGVASLEFITPTPFLSEKYANSVRTSLFADAGSVWDTNWKNTAAMRAAGVPDYSDPSNIRISAGIALQWMSPLGPLVFSYAQPFKKYEGDKAEQFQFNIGKTW
>NC_017933.1|WP_014729557.1|3401551_3402904_-|sigma-E-protease-regulator-RseP
MLSILWNLAAFIIALGVLITVHEFGHFWVARKVGVRVERFSVGFGKALWRRTDRHGTEYVIALIPLGGYVKMLDERVEPVAPERRHEAFNNKSVSQRAAIIAAGPIANFLFAIFAYWLVFMMGVPGLKPVIGEITPNSIAAKAQIEPGTELKAVDGIETPDWDAVRLELVGRIGDKNVTLSIASPGDTATTDKVLDLRQWQFEPDKEDPVASLGIRPFGPKIEPVLAQVQPKSAASKAGLQAGDRIVKVDGQPLSEWSTFVTMVRDNPARPLAIEIERQGSPLSLTLIPDTKPGNEKAEGFAGVVPKIAPLPDEYKTVRQYGPFNAIAEASEKTWQLMKLTVNMLGKLLTGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSMLLVLLMGLALFNDFSRL
>NC_017933.1|WP_014729558.1|3402915_3403773_-|phosphatidate-cytidylyltransferase
MLKYRLISAFVLIPVVIAALFLLPPMGFAIATLVVCVLAAWEWGQLSGFTSRSQRVWLALLCGLLLALMLFFLPIYQAPISVPLVEGALWASLGWWVVALLLVLFYPNSATFWRHSKALRLVFGLLTIVPFFWGMVALRAWHYDANHYSGALWLLYVMFLVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFIGGLVTAAIISWIYGAWADLNVAPVTLLTCSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTI
>NC_017933.1|WP_004386134.1|3403785_3404544_-|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase
MLSVNLPLSENLPAHGARHVAIIMDGNGRWAKRQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRVIGDISRFNTRLQDRIHKAEALTSQNTGLTLNIAANYGGRWDIIQGVQQLAAQVQEGLLRPDQIDEEMLSKQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTAPGGIDA

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Crispr_ID: NC_017933_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_16

3450829-3450971

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
CTGCCTGTACGGCAGTGAACGAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017933_16

>merge|NC_017933|16|3450829-3450971|PILER-CR,CRISPRCasFinder
CTGCCTGTACGGCAGTGAACGAGCCCGGCGCTGTAATGATCTACATCACTCGTTTCTAAGCTGCCTGTACGGCAGTGAACGAGTATCAGCGGAGGAAAGCGGCAGGCATCGTTTTCTAAGCTGCCTGTACGGCAGTGAACAAG

>NC_017933|16|3|3450829-3450968|PILER-CR
CTGCCTGTACGGCAGTGAACGAGCCCGG	CGCTGTAATGATCTACATCACTCGTTTCTAAG
CTGCCTGTACGGCAGTGAACGAGTATCA	GCGGAGGAAAGCGGCAGGCATCGTTTTCTAAG
CTGCCTGTACGGCAGTGAAC

>NC_017933|16|16|3450829-3450971|CRISPRCasFinder
CTGCCTGTACGGCAGTGAACGAG	CCCGGCGCTGTAATGATCTACATCACTCGTTTCTAAG
CTGCCTGTACGGCAGTGAACGAG	TATCAGCGGAGGAAAGCGGCAGGCATCGTTTTCTAAG
CTGCCTGTACGGCAGTGAACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_004387652.1\|3441435_3441816_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NC_017933.1\|WP_148268880.1\|3454522_3457120_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_017933.1\|WP_007707680.1\|3453507_3453873_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NC_017933.1\|WP_014729580.1\|3449172_3450735_-\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810
NC_017933.1\|WP_015386992.1\|3451347_3451695_+\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NC_017933.1\|WP_007896738.1\|3444036_3444963_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_017933.1\|WP_032988846.1\|3446518_3448915_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NC_017933.1\|WP_007864424.1\|3451818_3452670_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NC_017933.1\|WP_004387876.1\|3454056_3454437_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_004387654.1\|3443269_3444040_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NC_017933.1\|WP_004388373.1\|3461421_3462846_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_017933.1\|WP_014729582.1\|3458025_3459510_+\|DUF3300-domain-containing-protein	unknown	unknown	gnl\|CDD\|378701
NC_017933.1\|WP_014729579.1\|3441857_3443105_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NC_017933.1\|WP_014729578.1\|3440483_3441338_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NC_017933.1\|WP_007775425.1\|3445071_3445734_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NC_017933.1\|WP_041460895.1\|3459523_3460318_+\|DUF2950-family-protein	unknown	unknown	gnl\|CDD\|371539
NC_017933.1\|WP_014729577.1\|3439676_3440471_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NC_017933.1\|WP_004387657.1\|3445789_3446326_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
NC_017933.1\|WP_012125743.1\|3460373_3461105_-\|complement-resistance-protein-TraT	unknown	unknown	gnl\|CDD\|184283
NC_017933.1\|WP_004387874.1\|3452684_3453479_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|235480

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_004387652.1\|3441435_3441816_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	5.04325e-76
NC_017933.1\|WP_148268880.1\|3454522_3457120_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_017933.1\|WP_007707680.1\|3453507_3453873_-\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	3.99113e-69
NC_017933.1\|WP_014729580.1\|3449172_3450735_-\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0
NC_017933.1\|WP_015386992.1\|3451347_3451695_+\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	1.59692e-07
NC_017933.1\|WP_007896738.1\|3444036_3444963_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.8889e-102
NC_017933.1\|WP_032988846.1\|3446518_3448915_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NC_017933.1\|WP_007864424.1\|3451818_3452670_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	0
NC_017933.1\|WP_004387654.1\|3443269_3444040_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	9.07927e-174
NC_017933.1\|WP_004388373.1\|3461421_3462846_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_017933.1\|WP_014729582.1\|3458025_3459510_+\|DUF3300-domain-containing-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	2.84818e-96
NC_017933.1\|WP_014729579.1\|3441857_3443105_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	1.42789e-63
NC_017933.1\|WP_014729578.1\|3440483_3441338_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.57805e-171
NC_017933.1\|WP_007775425.1\|3445071_3445734_+\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	4.76363e-164
NC_017933.1\|WP_041460895.1\|3459523_3460318_+\|DUF2950-family-protein	gnl\|CDD\|371539	pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins.	1.94049e-95
NC_017933.1\|WP_014729577.1\|3439676_3440471_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.63825e-164
NC_017933.1\|WP_004387657.1\|3445789_3446326_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	3.79967e-112
NC_017933.1\|WP_012125743.1\|3460373_3461105_-\|complement-resistance-protein-TraT	gnl\|CDD\|184283	PRK13731, PRK13731, complement resistance protein TraT.	1.0809e-126
NC_017933.1\|WP_004387874.1\|3452684_3453479_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|235480	PRK05462, PRK05462, adenosylmethionine decarboxylase.	0

>NC_017933.1|WP_014729580.1|3449172_3450735_-|multicopper-oxidase-CueO
MQRREFIKYTAALGALSALPTWSRAAFAAEQPALPIPALLTPDARSSIQLTVQAGKTAFAGKNVTTWGYNGSLLGPAIKLRQGTPVNINIRNNLAEETTVHWHGLEVPGAVDGGPQGIIAPGQTRSVSFTPEQRAATCWFHPHQHGKTGHQVAMGLAGLVLIEDTESLQLMLPKIWGVDDVPLIIQDKKFTADGEVDYQLDVMTAAVGWFGDTLLCNGAVYPQHTPPKGWLRLRLLNGCNARSLKIAASDNRPLYVIASDGGLLAEPVKVTELPMLMGERFEVLVDTSDARPFDIVTLPVTQMGMTVAPFDKPQPVVRIQPIVVPASGTLPDKLVEVPPLPTLDGLQERWLQLMMDPMLDMMGMDELVKRYGKQALAGNAHGQMMGQMGHGKMSHGGMNHGGHGFDFHNANKINGKAFDMNAPAFGAALGKYERWTISGEGDMMLHPFHIHGTQFRILTENGKPPAAHRAGWKDTVWVEGARSEVLVRFDYAASAEHAYMAHCHLLEHEDTGMMLGFTVA
>NC_017933.1|WP_032988846.1|3446518_3448915_+|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MAETKKTQSRLLVMLTALFAALSGLYLLVGGIWLVSIGGSWYYPIAGVGMLATAWLLWRRNAAALWLYAIILLGTMAWGIWEVGFDFWALTPRCDVLVFFGVWLILPFVWRRLSTPSRAGVPALLVSLIITAGLLFWAGFNDPQEINGTLSADSTPAAVNGSQSIPDGDWPAYGRNQEGQRYSPLKQINTDNVHKLKEAWVFRTGDLKLPTDPGEITNEVTPIKVGDTLFLCTAHQRLFAVDAATGKEKWHFDPQLNTNPSFQHVTCRGVSYHEATAANASPDVVADCPRRIILPVNDGRLFAVNADNGKLCESFANKGILNLQTNMPVTTPGMYEPTSPPIVTDKVIVIAGAVTDNFSTREPSGVIRGFDINTGKLLWAFDPGAKDPNAIPADEHHFSLNSPNSWAPASYDAKLDMVYLPMGVTTPDIWGGNRTPEQERYASSIVALNASTGKLVWSYQTVHHDLWDMDLPAQPTLADITVKGETVPVIYAPAKTGNIFVLDRRNGKLVVPAPEKPVPQGAAKGDYVTPTQPFSDLSFRPKKDLSGADMWGATMYDQLVCRVMFHSLRYEGIFTPPSEQGTLVFPGNLGMFEWGGLAIDPHRQVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTEAGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNDVVWKKRIGTPRDSMPFPMPFPVPFNMGMPMLGGPITTGGNVLFIGATADNYLRAYNVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDAK
>NC_017933.1|WP_004387657.1|3445789_3446326_-|hypoxanthine-phosphoribosyltransferase
MKHTVEVMISEAEIKARVEELGRQITERYQDSGSEMVLVGLLRGSFMFMADLCRQVHVAHEVDFMTASSYGSGMSSTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVDVEVEYVGFSIPDKFVVGYGIDYAQRYRHLPYIGNVVMLEE
>NC_017933.1|WP_007775425.1|3445071_3445734_+|carbonate-dehydratase
MKDISTLISNNEIWSKMLVKEDPGFFERLAKAQKPRFLWIGCSDSRVPAERLTGLEPGEIFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWLLHIRDIWLKHNALLSELPQEKRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQNVTLHGWAYGIHDGLLRDLDVTATDRDTLEQGYRKGVSNIQKTHASHK
>NC_017933.1|WP_007896738.1|3444036_3444963_-|ABC-transporter-ATP-binding-protein
MTIALELEQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVRVFGYDLERDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERREAIARSEKYLNQLDLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQRGELVENTSMKSLLSKLKSETFILDLAAKSPLPKLEGYQYRLVDTSTLEVEVLREQGINSVFNQLTAQGVQVLSMRNKANRLEELFVTLVNEKQGERA
>NC_017933.1|WP_004387654.1|3443269_3444040_-|ABC-transporter-permease
MMQLYWVALKSIWAKEVNRFARIWVQTLVPPVITMTLYFIIFGNLIGSRIGEMHGFTYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLCVGILVTAVSLFFVPFQVHSWLFVALTLLMTAILFSLAGLLNAVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQALSHLNPIVYMISGFRFGFLGITDVPLLFTVAVLACFIIAFYLLCWYLISRGRGLRS
>NC_017933.1|WP_014729579.1|3441857_3443105_-|polysaccharide-deacetylase-family-protein
MLNRLFLCLLLLVAGVAQASLLGSEQPSPQYMQITEDAAIWAKVGDNVQTVGIIREGQLLAVVPIAADYYEFRFGFGTGFIDKAHLTDVQGKKRVTDSLGDLNKPLSNQNLLTWRDVTIYNEPDVNSEPFGTLAENLRYPIVGKLKDRLNQTWYQIRIGDRLGYISSLDAQEDNGIPVLTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDQGYATISLYDLDGYVHNRINLPARAVAITFDDGLKSVYRYAYPVLKEYGFKATAFIISSRIKRHPQRWDPKSLQFMSVSELKAIQDVFDVQSHTHFLHRTDGARHPILLSRTYHNILFDYQRSRRALSQFNPHVLFLSYPFGGYDDKAVKAAGDAGFHLAVTTVKGKVKPGDNPYLLKRLYILRTDSLETMSKIISNQPQG
>NC_017933.1|WP_004387652.1|3441435_3441816_+|aspartate-1-decarboxylase
MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLEAAGILEYEAIDIYNVTNGKRFSTYAIAGERGSKIISVNGAAAHCADVGDILIIASYVTMPDEQARSWQPKVAYFDGDNEMKRLAKAVPVQVA
>NC_017933.1|WP_014729578.1|3440483_3441338_+|pantoate--beta-alanine-ligase
MLIIETVPLLRQQIRRLRMEGKRIALVPTMGNLHDGHMKLVDEAKASADAVVVSIFVNPMQFDRADDLARYPRTLQEDCEKLKKRGADFVFAPTPEEVYPQGMSDQTYVDVPGLSTMLEGASRPGHFRGVSTVVSKLFNLVQPDVACFGEKDYQQLALIRKMTTDMGYDIEIVGVPTVRAKDGLALSSRNGYLTSDQRKIAPGLSKVMNTMAEKLRAGERDLEAIIAAASEALSEKGFRPDDLQIRDADTLQALSPASQRAVILMAAWLGQARLIDNQTVELTQ
>NC_017933.1|WP_014729577.1|3439676_3440471_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKPTTISQLRRLKDTGKKFATITAYDFSFAKLFEEEGIGVMLVGDSLGMTVQGHDSTLPVTVDDIAYHTRAVRRGAPHCLLLADLPFMAYATPEQAFENSATVMRAGANMVKIEGGQWLADTVRMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRDEAAAQTLLNDALAIEAAGAQLLVLECVPVALAQRITDALSIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAEAGDMRAAVRQYIAEVESGAYPGEEHSFH
>NC_017933.1|WP_015386992.1|3451347_3451695_+|YacC-family-pilotin-like-protein
MRKVVRLMFLGCLLAFSTNSFALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDSFNMKALGEDSYRDLSGIAIPTAKKCKALARDSLSLLAYVK
>NC_017933.1|WP_007864424.1|3451818_3452670_+|polyamine-aminopropyltransferase
MWHETLHDQFGQYFAVDKVLYREKTDHQDLIIFENSAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKRVLIIGGGDGAMLREVTRHQSVESITMVEIDAGVVAFCREHLPNHNAGSYDDPRFTLVIDDGVNFVNQTTQKFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEAIDSHKKLSHYFGDVSFYQAAIPTYYGGIMTFAWATDNDALRKLPLETLQARFHTAGLKCRYYNPAIHTAAFALPQYLQDALASQAS
>NC_017933.1|WP_004387874.1|3452684_3453479_+|adenosylmethionine-decarboxylase
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILTETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPQLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSDDIKSLYDMMDVNVYQENIFHTKMLLKEFDLKHYMFHTRPEELTEEERKVITDQLWKEMREIYYGRNIPSV
>NC_017933.1|WP_007707680.1|3453507_3453873_-|YacL-family-protein
MDYEFLRDITGVVKVRLSMGHEALGHWFNEEVKGNLALLDEVEAAARDVKGSERQWQKTGHEYTLWLDGEEVMVRANQLEFSGDEMEEGMSYYDEESLSLCGVEDFLQVVQAYRDFLAQYG
>NC_017933.1|WP_004387876.1|3454056_3454437_+|hypothetical-protein
MNFTLLRRALLLVALPLSHAYAGEAVRLECVNRGNVLVSFFKYHLSTMKWKDHFQIASGIEKSKTDNGVPYEMISFRNGDDLIYFPDKERYVLFDAGKQKPERCQVEGEFTYPVVSLPRYDGKAES
>NC_017933.1|WP_148268880.1|3454522_3457120_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGIVAKPLDATQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAVAKGEATSPLVTPEKAVELLGTMQGGYNIHPLIEALDNDKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNAYAKQIMQSWADAEWFLSRPALAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDIYPYSGEVRHHETGELLANFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRHAKDVAESNRGYSLAQKMVGRACGVAGVRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGITLRDLVHAIPYYAIQQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIEIDLNEIKEPILCAPNDPDDARLLSDVTGDKIDEVFIGSCMTNIGHFRAAGKLLDTHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVAALIGRLPTPEEYQQFMSQVDKTAVDTYRYLNFDQLDQYTEKADGVIFQTAV
>NC_017933.1|WP_014729582.1|3458025_3459510_+|DUF3300-domain-containing-protein
MKLPLKPHLLALLCSAGLFGASGVLFVKSQVLSAAAEAPVAAPSTAPVPPQPTPAPATTPTYSAAQIDQWVAPIALYPDALLSQILMASTYPMNMVQAAQWSQDHPTLQGDAAIQAVAGQPWDASVKSLVAFPQLMSLLGQNPPWIQNLGDAFLAQPDDVMASVQRLRALAQQTGALTSSPQQKVTTITRTAPPVSPEKPAAAPRSSTVIEIEPATPNVVYVPTYNPATVYGTWQNPAYPPVYLPLTPGEQFGNSFVRGLGYSLGVATTYALFSAIDWDDDDHHHHHDDDYHHHDRYDGGYWHNGDNININVNNYNRITGENRRGNTMPWHPNPAYHNGMDNPHTRVVTPLHRPASATDPITDNRASQRQAAAARFQQATGHSATVNTGHQPFRHSLQERAQRSNYRGYDIKPESARLARHAHNASERPFHDATRHAPYRDLHASAFSGNDSRSARWQVQQQRGIESRHLAAAHRPDTPVRERHIEHRQHERHH
>NC_017933.1|WP_041460895.1|3459523_3460318_+|DUF2950-family-protein
MKSTFLAALAFGLSASHAFAQAQFSTPDQAADALTQAISTHDEAALNHLLGDDWRGILLPEGADPEEVSRFLRDWKVNHHIVLQGDTAHLQVGAQDWQLPVPLVKHAQGWQFDMQGAAEEILTRTIGRNELAAITALHAGVDAQQSYYALNQRYAEKIISSEGKKDGLYWPVKPGEAPSPLGPAFSPQRQDMGYHGYHFRLLPTHDNGFAMLAWPVSYGETGVMSFIAKQDDRVLQANLGTDTAQRVSVIDPAHLDKTWEPVAP
>NC_017933.1|WP_012125743.1|3460373_3461105_-|complement-resistance-protein-TraT
MSVKKLAVVGLVLAAFTLTGCGAMTTAIKKRNLEVKTQMSQTIWLEPSSEKTVYIQVKNTSDKDMSNLQTLLANDLSAKGYKVTSSPDSAYYWIQANVLKADKMDLREAQGYLKTGYEGAVAGAALGAGITAYNSNSSGAALGVGLAAGLIGMAADAMVEDVNYTMVTDLQISERSKATVTTDNIAALRQGTSGVKLQTSTEQGNRAKYQTRVVSSANKVNLKFEEAKPALEAQLAKSVASIL
>NC_017933.1|WP_004388373.1|3461421_3462846_-|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLSGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGMKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK

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Crispr_ID: NC_017933_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_17

3715781-3715881

Orphan

Consensus_repeat	Method
ACGGTGGGTGCGCTTCGCTTACCCACCCTACCAAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_17

>merge|NC_017933|17|3715781-3715881|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTACCAAACACCGTCAGGTATGCTGGCGATACGGTAAACGGTGGGTGCGCTTTGCTTACCCACCCTACCAAACA

>NC_017933|17|17|3715781-3715881|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTACCAAACA	CCGTCAGGTATGCTGGCGATACGGTAA
ACGGTGGGTGCGCTTTGCTTACCCACCCTACCAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014729699.1\|3716029_3716491_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NC_017933.1\|WP_014729703.1\|3723657_3724662_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NC_017933.1\|WP_007891270.1\|3712875_3713988_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NC_017933.1\|WP_014729692.1\|3704381_3705398_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379160
NC_017933.1\|WP_014729701.1\|3719464_3720667_-\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NC_017933.1\|WP_014729694.1\|3706084_3707104_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_017933.1\|WP_014729704.1\|3724996_3725449_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NC_017933.1\|WP_015387054.1\|3720861_3721365_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_017933.1\|WP_014729697.1\|3711307_3711742_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014729702.1\|3721411_3722218_-\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_000908169.1\|3702609_3703524_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014729698.1\|3711806_3712889_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NC_017933.1\|WP_148268881.1\|3725428_3725752_+\|hypothetical-protein	unknown	unknown	unknown
NC_017933.1\|WP_014729695.1\|3707516_3709181_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274090
NC_017933.1\|WP_007780838.1\|3714257_3715769_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_017933.1\|WP_007854271.1\|3722262_3723027_-\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	unknown	unknown	gnl\|CDD\|114868
NC_017933.1\|WP_014729696.1\|3709570_3711214_-\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|274097
NC_017933.1\|WP_007854269.1\|3723074_3723494_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NC_017933.1\|WP_014729700.1\|3716493_3719349_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_017933.1\|WP_014729693.1\|3705397_3705976_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014729699.1\|3716029_3716491_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	1.26265e-64
NC_017933.1\|WP_007891270.1\|3712875_3713988_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NC_017933.1\|WP_014729692.1\|3704381_3705398_+\|HNH-endonuclease	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	1.16333e-09
NC_017933.1\|WP_014729695.1\|3707516_3709181_-\|hypothetical-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	3.59627e-12
NC_017933.1\|WP_014729694.1\|3706084_3707104_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	8.37716e-166
NC_017933.1\|WP_014729704.1\|3724996_3725449_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.32117e-62
NC_017933.1\|WP_015387054.1\|3720861_3721365_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.41857e-19
NC_017933.1\|WP_014729703.1\|3723657_3724662_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NC_017933.1\|WP_014729698.1\|3711806_3712889_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NC_017933.1\|WP_014729701.1\|3719464_3720667_-\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.95034e-77
NC_017933.1\|WP_007780838.1\|3714257_3715769_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_017933.1\|WP_007854271.1\|3722262_3723027_-\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	3.94366e-99
NC_017933.1\|WP_014729696.1\|3709570_3711214_-\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NC_017933.1\|WP_007854269.1\|3723074_3723494_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	3.21804e-66
NC_017933.1\|WP_014729700.1\|3716493_3719349_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_017933.1\|WP_014729693.1\|3705397_3705976_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.82055e-17

>NC_017933.1|WP_007780838.1|3714257_3715769_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNTYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIASGIKAAKDLGNMPPNICNAAYLASQARQLADSFSKNVVTRVIGEQQMKELGMHSYLAVGEGSQNESLMSVIEYKGSSEPDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELNLPVNVTGILAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFDPEVVIDVATLTGACVIALGHHITGLMSNHNPLAHELISASEQAGDRAWRLPLADEFQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE
>NC_017933.1|WP_007891270.1|3712875_3713988_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVNGSKFNDVFLAQLRPKGNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVALDPDDAEQMDMKTLWQANSKSARAEFHWRLTLVFAVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWAVNLLYLALAVALNLWDTVPMRRIRARFARRGVIDAGI
>NC_017933.1|WP_014729698.1|3711806_3712889_-|LPS-export-ABC-transporter-permease-LptG
MLGFSVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWVAPQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGNNFVYIERVKGENELGGISIYAFNDKRRLESVRYAANAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVALDPDALSISGLRNYVKYLKASGQDASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLIKRA
>NC_017933.1|WP_014729697.1|3711307_3711742_-|hypothetical-protein
MKRLASLFLLFFAHLAFVPEALLMILIVGAYFYFRDPLPWLAFEGAVFAVLALLFALLARHVDRRSLSVGVVTAGSPQEKEADEVLRLFSLGEHLLFAITSATLPYFILSFFIFDGRVAFWLHTVFLAAVLVGVHFAGRWLDRL
>NC_017933.1|WP_014729696.1|3709570_3711214_-|dihydroxyacetone-kinase-subunit-DhaK
MSRFFFDDRKRLINDAVDGLILSARHQNLTRLDIDPAIRIVARRDWDKSKVAVISGGGSGHEPAHAGFVGKGMLTAAVCGDLFASPSVDAVLNAIVAVTGDHGCLLIVKNYTGDRLNFGLAAEKAKRHGLKVEMVIVSDDVALPDNKQPRGIAGTALVHKIAGFAAEQGKSLSDVRALAQQASDEVKSLGVALQTCSLPGGTEDGRIKQGEAELGLGIHGEPGASTIGTQNSREIVATLVESLTAQVPADARLAVLINNLGGTSALEMALLTRELSRSALKDRIDWLIGPAPLVSALDMKGFSLSLLPLNDVFTEALNAPVETAGWLVPVAFGEPHAQSLPLVRDSVEAAPSDNPHVRRLLERATAALIAQEAHLNALDAKVGDGDTGTTFAEGARDIAQKLANNQLPLNDAAALLQLIGERLATVMGGSSGVLMSIFFTAAGQKVADGAALPDALLAGLAQMKHYGGAAPGDRTLIDALQPALEALRDEGISAAAQAAEQGAKATAQMGQARAGRSSYVGSDNLAGVEDPGAVAVAGVFKAITQGG
>NC_017933.1|WP_014729695.1|3707516_3709181_-|hypothetical-protein
MKDAWLAACDTTIQNFVRDSTRLEPGELSVVPVDYIDFHYQISLRLIFNVRTDTASQAGRVSAGLNTDVCHSRPEYERALQAQTSAILARDKTLDDARASLLSRPYGDWKSEEVVYLHPMQVCLTENCNNCHGSGSVNCGQCHGSGKTSCYGCGGSGQVMRQRSYYDHYTKQNRTENYYESCPACYGGRVTCNGCGGSGKKQCSPCSGTGMISHITSLKATATPDYQLVYPQADVPEYIREGLYKAGVPLLGSYGPVALAYNDVDYARRDVHVLYDANVPFGRMESPLPEAGEEPIRWILYGVTPHILDAGHVLQALLKNDLDMLVRQAMPGKRRNPRVGAASRKTVQTFMESEAHQAMLIEHSRGKRGDALREALNRAFATPYLNEALESLGSLVSAVQRWSLAKWSLFTALIMYLLLPVVTTWQRQGMMNFDTGRIYLTAPGHINGVWNVEAGLKGIAMVHGIPMLCIALVGTLVGYLWRSHWLNRQFGKPLTVWGKQQGRLRSRWLLGAVLSMVIATALLLVAPVWISQDEMLYGVVPVHELIQQLVALRQ
>NC_017933.1|WP_014729694.1|3706084_3707104_+|NAD(P)-dependent-alcohol-dehydrogenase
MTIIKSYAAHKAGAELELYEYDAGELKPEDVEVEVEYCGICHSDLSMIDNEWGISAYPLIAGHEVIGRVSSLGGSAQNKGLKVGQRVGIGWTASSCEHCDACISGNQVNCQHGSVPTILNRGGFADKIRANWQWVIPMPEGIDAASAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLRAMGCEVTAFSSNPSKEQEILAMGADKVVNSRDPQALQALAGQFDLIINTVNVSLDWMPYFQALAWGGNFHTVGAVMKPFEVPAFSLIMGDRSVTGSATGSPHELRSLMKLAARAKVAPQTEEFPMSRINEALQHVRDGKARYRVVLKADF
>NC_017933.1|WP_014729693.1|3705397_3705976_+|class-I-SAM-dependent-methyltransferase
MTQNYYQAHAHEFFEGTVAVDMSSLYDAFIPHLPAGARVLDAGCGSGRDALAFRQMGYEVEAFDACGELVALARAHSGLPVKEMTFNNLAAVERYDGIWCCASLLHLSHDELPAAMQKLSAALKPGGIWYLSFKYGEGEREQQGRRFTDMNEARLTTLLAAFPELSPQALWVTQDKRPERREQWLNGLLVKR
>NC_017933.1|WP_014729692.1|3704381_3705398_+|HNH-endonuclease
MDFFEKDPTPENYWRGVILFGNNFATYKFALAQALYEVKRENSLVKLEELALPFSAHICAHLREAPKQILNIKRPGQFILACQQFNQQEITQGQLIEATVRHGFNVVLKAFHNVSGGPIAKPFFINEPRAHKAIRLTDDFYRLTETTQFANLTHETDARWRLVEKAWQMNLPPQLLDVHYDPEQETLFTRLSSSRIALTSCRNSLNGYQKGHCFYCNAPISLEKHHPTLADVDHFLPLAAQLPGVNLNGVWNLVLACRSCNRGENGKSARVPTLALLARLHARNEYFINSRLPLHEAIINQTGNNERQRKTFLQDAWNAAFANRLRQWAPEPQQELIF
>NC_017933.1|WP_000908169.1|3702609_3703524_+|hypothetical-protein
MLIQKKRIRNIDNYIPNFDGRDIYIAHSLPDAGKTDSIGFSSQRALGEEVLPKILGPITRFNANGKSVPDKTAPKETAYRQISWTRKQWIGGGATQEVTDTREIEYKRYKRILTPPPSIELKIVENLQGEKLIISPKLSLTANNKELVAHCINLFLELFGLCETVDDQLNTIVKSKSIKLNWSLLPQGQQPWSTIGSKILSAIKIRGKGNTAVVEGRLELINSKKPDFVAVGQAGFQGYVIFGFTGQNIYVLESSQCNNATYILNNNWQQLSQLTKAEILDGNLHHARVIHRVNWAAEILKYLP
>NC_017933.1|WP_014729699.1|3716029_3716491_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDDTADGLSAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRDPDSFVPHNLAGEGPRGGAPVEIAWPQKRGSSPRELLISLLPEFAAFATAFYEVVDFVPYDESQKQLARERYKAYRAAGFHLTTATFTAPGTTQ
>NC_017933.1|WP_014729700.1|3716493_3719349_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEQQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGRDAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVVLPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHQLPMINILTFDGDIRESAEVYDTKGNESDVYSNEIPAQFQKMERFAARKAIVAAVDELGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDAEGNVYVGRSEEEVRQENNLSADVALRQDDDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFKTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGITLEELLEKRTGNMMQPQLAEKIRKRTEKQFPEGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEDQDCGFNGGEKVLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGSEAELRGTRNTLVTVLEGLLRLAHPIIPFITETIWQRVKVIAGIDADTIMLQPFPAFDASRVDDAALADTEWLKQAIIAVRNIRAEMNIAPGKPLALLLRGCSQDAQRRVNDNRGFLQTLARLESITVLPADDKGPVSLTKIIDGAELLIPMAGLIDKDAELARLAKEVAKIEGEIGRIESKLGNEGFVARAPEAVIAKEREKLAGYHEAKAKLIEQQGVISAL
>NC_017933.1|WP_014729701.1|3719464_3720667_-|DUF898-family-protein
MSDDNKFLAGNKTHAFSFQGSGGGYFPVWLVNILLTVFTAGLFLPWAMVRARRYFYENTELAGARFSYHATGGAIFVGWICLALLYVVFVINAVYENTFLTLCMVLLFIAFAPFLIMQGLRYQLLMTKLNGLRFSFKASPLRAWWVMLGCPLLIAILVTAVMGLVFTIAGSSQSMTGIIVGIVLSVLVGLVGTALMQGIYAAQWYGLLVNNLQYGKHRFAINLNVKTCTFIYLKAMLLFVPFIAVALIMLAPVMTQMLHYSVYGMNSQEEMLSFLISLIMSVLLPYFIYMVGILVCFSFAFVKLRNYAYQQMSLEGGITFRSTASVGSFVWIILSNFLVCGITFGLAWPWAKVRLTRYLLENTHVDGELDNLALVDHDEQPRNDPASVLGRGFSILPFAL
>NC_017933.1|WP_015387054.1|3720861_3721365_+|GNAT-family-N-acetyltransferase
MNVEAPVDIIMRRMTAADNATVARVIRQVSAEYGLTADKGYTVADPNLDVLYTQYSKPGHAYWVIELDGEVVGGGGIAPLACSETDICELQKMYFLPVARGRGLAKKLALQAMDFARSQGYRRCYLETTAFLKEAIALYERLGFAHISEPLGCTGHVDCEVRMLKTL
>NC_017933.1|WP_014729702.1|3721411_3722218_-|hypothetical-protein
MNWNHVMLSALVGIVLAVVASALYKKGKVNKLAAVAIFVVGIVLWNIADIAWLRSANTSPEQGFDEVFNSMPLYKLIKEKDPAFYARLRGQALEMAKQGKTQQDIIDAMQANMAELEMQRIQFAPDEDVIAYMRVNMEQTREMQQHSDDACFRFLMPQVKGGVNPVQMLSKEVIAKRMDVETKLLSASYSQNAHKVTPQEQKMAEETLAPIGQSLAAKYGDTIEVFTDPQKGVGQEKQVCNMVQDLWHDVLALPPEKAGPVIRISMQQ
>NC_017933.1|WP_007854271.1|3722262_3723027_-|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE
MNYDALLLPVKNFLHCATPQAWIDEARAPENLPLLLTDHMICELKAAQTAMLLIRRYVADKSGSDELLGWLQPYEDFTYREGPEPDFLALHKRIGKSVMPHTDDPWGQTLIDSMVLLIKEELHHFWQVREMMQARNIPYVKITASRYARGMRREMRTYEPATLVDKLICGAYIEARSCERFAALAPYLDDDLQKFYLSLLRSEARHYQDYLSLAQQISPEDIAPRVQALGEAEARLINQPDTEFRFHSGVPVSA
>NC_017933.1|WP_007854269.1|3723074_3723494_-|ribonuclease-E-inhibitor-RraB
MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHFSADDFDTLEKLAVEVFKLGYEVTDPEELELEEGGETVICCDALSECALNAELIDAQVEQLMNLAEKFNVEYDGWGTYFEDPDGEEDEDDDGMDEDDDGVRH
>NC_017933.1|WP_014729703.1|3723657_3724662_+|ornithine-carbamoyltransferase
MSALYQKSFLKLLDFTPAQIHLLLELSAKLKSDKKNGVEVQKLAGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGFGQEIVETLAQYAGVPVWNGLTDEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALMGLDLRLVAPERCWPAAELVAECQAMAKETGGRITLTEDIAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRPYQVNSQMLALTGNPNVKFLHCLPAFHDDETTLGKQMAQEYGLTGGMEVTDEVFESAHSIVFDQAENRMHTIKAVMVATLSE
>NC_017933.1|WP_014729704.1|3724996_3725449_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHALGEWLPAPFREAIEQVKQQVTPQTAPGKYELDGNRLFFLLSEDTTEPLAERRAEYHARYLDIQIVLAGREGMTFSTLPPGALETDWLADKDIAFLPEGAHEKTVVLEEGDFVIFWPGEVHKPLCAVGDPAPVRKAVVKMLMA
>NC_017933.1|WP_148268881.1|3725428_3725752_+|hypothetical-protein
MNITDNHAFSLYKTAFHFIVLYELSCRGATAFSVKSVLAHGYRAARYQLVNPRQTFMQVLCITLANTIGSLSVGVCFISDKMKKDGTITFRLPHKQAQQHHNYLLYS

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Crispr_ID: NC_017933_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017933_18

4109226-4109342

Orphan

Consensus_repeat	Method
GTAGGGCGGGTAAGCAACGCGTACCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017933_18

>merge|NC_017933|18|4109226-4109342|CRISPRCasFinder
GTAGGGCGGGTAAGCAACGCGTACCCGCCGCCGTGAATACACCCGTAGGGCGGGTAAGCAACGCGCACCCGCCAGCGTGAATACACCCGTAGGGCGGGTAAGCAACGCGCACCCGCC

>NC_017933|18|18|4109226-4109342|CRISPRCasFinder
GTAGGGCGGGTAAGCAACGCGTACCCGCC	GCCGTGAATACACCCGTAGGGCGGGTAAGCAACGCGCACCCGCCAGCGTGAATACACCC
GTAGGGCGGGTAAGCAACGCGCACCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017933.1\|WP_014729854.1\|4112102_4114226_-\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NC_017933.1\|WP_014729852.1\|4110235_4110550_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
NC_017933.1\|WP_014729844.1\|4099234_4100440_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NC_017933.1\|WP_014729850.1\|4108336_4109161_+\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
NC_017933.1\|WP_014729851.1\|4109369_4110239_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_017933.1\|WP_014729849.1\|4107070_4108327_+\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NC_017933.1\|WP_014729856.1\|4116739_4117063_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NC_017933.1\|WP_004385742.1\|4098449_4099238_+\|transcriptional-regulator-LldR	unknown	unknown	gnl\|CDD\|236690
NC_017933.1\|WP_014729848.1\|4105601_4107074_+\|rhamnulokinase	unknown	unknown	gnl\|CDD\|182609
NC_017933.1\|WP_004385161.1\|4117441_4118284_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NC_017933.1\|WP_007899204.1\|4114343_4115351_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380665
NC_017933.1\|WP_041460976.1\|4104463_4105300_-\|HTH-type-transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|184094
NC_017933.1\|WP_015387089.1\|4101513_4102134_-\|superoxide-dismutase-[Mn]	unknown	unknown	gnl\|CDD\|182843
NC_017933.1\|WP_004385160.1\|4117101_4117311_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NC_017933.1\|WP_004385145.1\|4102506_4103544_+\|L-rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|115061
NC_017933.1\|WP_085959427.1\|4116080_4116740_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NC_017933.1\|WP_014729855.1\|4115426_4115975_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017933.1\|WP_014729845.1\|4100765_4101443_-\|6-N-hydroxylaminopurine-resistance-protein	unknown	unknown	gnl\|CDD\|183182
NC_017933.1\|WP_014729853.1\|4110782_4112045_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236549
NC_017933.1\|WP_014729846.1\|4103540_4104392_-\|HTH-type-transcriptional-activator-RhaR	unknown	unknown	gnl\|CDD\|184092

Protein	Function_ID	Function_description	E-value
NC_017933.1\|WP_014729854.1\|4112102_4114226_-\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NC_017933.1\|WP_014729852.1\|4110235_4110550_+\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	1.16393e-61
NC_017933.1\|WP_014729844.1\|4099234_4100440_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NC_017933.1\|WP_014729850.1\|4108336_4109161_+\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	0
NC_017933.1\|WP_014729851.1\|4109369_4110239_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	1.85738e-146
NC_017933.1\|WP_014729849.1\|4107070_4108327_+\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
NC_017933.1\|WP_014729856.1\|4116739_4117063_+\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	2.55601e-05
NC_017933.1\|WP_004385742.1\|4098449_4099238_+\|transcriptional-regulator-LldR	gnl\|CDD\|236690	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional.	6.78077e-145
NC_017933.1\|WP_014729848.1\|4105601_4107074_+\|rhamnulokinase	gnl\|CDD\|182609	PRK10640, rhaB, rhamnulokinase; Provisional.	0
NC_017933.1\|WP_004385161.1\|4117441_4118284_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	3.6922e-149
NC_017933.1\|WP_007899204.1\|4114343_4115351_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380665	cd20010, PBP1_AglR-like, Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) and similar proteins. Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.82063e-88
NC_017933.1\|WP_041460976.1\|4104463_4105300_-\|HTH-type-transcriptional-activator-RhaS	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	0
NC_017933.1\|WP_015387089.1\|4101513_4102134_-\|superoxide-dismutase-[Mn]	gnl\|CDD\|182843	PRK10925, PRK10925, superoxide dismutase [Mn].	2.91491e-155
NC_017933.1\|WP_004385160.1\|4117101_4117311_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	0.00144296
NC_017933.1\|WP_004385145.1\|4102506_4103544_+\|L-rhamnose/proton-symporter-RhaT	gnl\|CDD\|115061	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.	0
NC_017933.1\|WP_085959427.1\|4116080_4116740_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.23179e-40
NC_017933.1\|WP_014729855.1\|4115426_4115975_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.3471e-12
NC_017933.1\|WP_014729845.1\|4100765_4101443_-\|6-N-hydroxylaminopurine-resistance-protein	gnl\|CDD\|183182	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional.	1.11013e-165
NC_017933.1\|WP_014729853.1\|4110782_4112045_-\|MFS-transporter	gnl\|CDD\|236549	PRK09528, lacY, galactoside permease; Reviewed.	0
NC_017933.1\|WP_014729846.1\|4103540_4104392_-\|HTH-type-transcriptional-activator-RhaR	gnl\|CDD\|184092	PRK13501, PRK13501, HTH-type transcriptional activator RhaR.	6.51855e-136

>NC_017933.1|WP_014729850.1|4108336_4109161_+|rhamnulose-1-phosphate-aldolase
MQRILSSWFVQGMVKATSDMWLKGWDERNGGNVSLRLDAADVEPYRDEFYPAPRCVELSQPRTELAGCWFLVTGSGKFFRNVQLDPADTLVLLQITDDGMAYHIHWGLTNGGLPTSELASHFQSHAVRKAVSGGKDRVIMHCHATNLIALSFVLELDEARFTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGSATSEQMKTHTLVLWPHHGIFGTGPTLDEAFGLIDTAEKSAEILVKVLSMGGMKQTITREELIALGERFGVTPHAGAIAL
>NC_017933.1|WP_014729849.1|4107070_4108327_+|L-rhamnose-isomerase
MTTHIHQAWELAKQRFAAVGVDAEAALRQLDRLPVSMHCWQGDDVAGFENPQGQLTGGIQATGNYPGKARNAEELRADLDQALRLIPGPKRLNLHAIYLESDTTVARNEIKPAHFANWVAWARERQLGLDFNPSCFSHPLSADGFTLSHPNPEIRQFWIEHCQASRRVSASFGEQLGTPSVMNIWIPDGMKDTPVDRLAPRRRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYLGYAASRQTALCLDAGHFHPTEVISDKISAAILYVPRLLLHVSRPVRWDSDHVVLLDDETQAIAGEIIRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAQLRQLELDGDYTARLALLEEQKSLPWQAVWEMYCERHDTPADAAWLSAVRHYEQQILSTR
>NC_017933.1|WP_014729848.1|4105601_4107074_+|rhamnulokinase
MTIRHSVAVDLGASSGRVMLARYDSHGQRLTLEEIHRFANGLRRVDGFDTWDVEALEREVRAGLEKACARGVAIDSIGIDTWGVDYVLLDARGERVGLPVSYRDSRTDGIMARAEQQMGREAIYRRTGIQFLPFNTLYQFRALVEQQPELAGRVAHALLIPDYLCYRLTGALNWDYTNATTTQLININTDNWDETLLDWAGVPHHWLGAPTHPGNVIGHWRSAQGVEVPVVSVATHDTASAVIAAPLATPDAAYLSSGTWSLMGFESKTPYTDDRALAANITNEGGAEGRYRVLKNIMGLWLLQRVCQEQQITDLPALIDEARALAPCRFVVNPNDDRFINPENMSREIQAACLERGEPAPQSAAELARCVFDSLALLYARVLDELTALRGRPFTVLHIVGGGSQNPLLNQLCADACGIPVLAGPVEASTLGNIGCQLMALDDIADVDAFRRVVTASQTLTPFHPQTDSEIARHAARVSPSRQIRKELYA
>NC_017933.1|WP_041460976.1|4104463_4105300_-|HTH-type-transcriptional-activator-RhaS
MTVLQSVDFFPSGAASVTIEPRLPQAAFPEHHHDFYEIVIVEHGTGTHVFNGQPYTLSGGSVCFVRDHDRHLYEHTENLCLTNVLYRSPQAFSFLSGLEKLLPQEQDGHYPSHWRVSQQTLHQARPLVGQLEALRESSDVHAIASMEMLFMQLLILLRSGAHAQGDGRPDERLNQLIAWLEEHYAEEICWEQLADHHRLSLRTLHRQLKQRTGLTPQRYLNRLRLMKARYLLRHSEESVTDIAYQCGFGDSNHFSTLFRREFSWSPRDIRQGRDGQIQ
>NC_017933.1|WP_014729846.1|4103540_4104392_-|HTH-type-transcriptional-activator-RhaR
MASQLVLRKADFFATPTQPVVVADRYPQNVFAEHTHEFCELVLVWRGNGLHVLNDRPYRITCGDLFYIRAEDRHSYQSVNELVLHNIIYCPERLQLNVNWRDLLENPRGASGDPRWRLSSQGMVQARQVIDQLEHESPKQDALSHCLAESLFLQLAITLRRHRYQPSGGTGPGEGETLDLLMAALGNSLDVPFDLQHFCSHYQIAERPLRQLFRQQTGMTISQYLRQLRLCQAQYLLRHTSLLISEIAARCGFEDSNYFSVVFTRETGVTPRVWRQQWGALAG
>NC_017933.1|WP_004385145.1|4102506_4103544_+|L-rhamnose/proton-symporter-RhaT
MSNAITMGILWHLIGAASAACFYAPFKKVRHWSWETMWSVGGVVSWLILPWVVSALLLPDFWAYYRSFSAATLLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPLLNGKFGVLVGTAGGRMTLLGVFVALVGVAIVTRAGQLKERQMGIKAEEFNLKKGLVLAVLCGVFSAGMSFAMDAAKPMHEAAAALGVDPLYVALPSYVVIMGGGALINLGFCFIRLAKVKNLSIKADFSLAKPLLISNVLLSALGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLLLREWKAAGRRPVSVLSLGCVVIIVAANIVGLGMATN
>NC_017933.1|WP_015387089.1|4101513_4102134_-|superoxide-dismutase-[Mn]
MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPELANLPVEELITKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVEKFKEEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGYPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFASQK
>NC_017933.1|WP_014729845.1|4100765_4101443_-|6-N-hydroxylaminopurine-resistance-protein
MYFPVQVYLGKIRDYEGSRPSAIGKVQVEGELSLTSRGLVGDQQAEKKIHGGADRALCHYPREHYAVWTREYPEQAEWFAPPAFGENLSTLGLTEENAFIGDIFRWGEALIQITQPRSPCFKVNFHSGISELSGRMQDTARCGWLYRVIGEGKVFSDAPLELVSRVSAISVREAAAIAWHTPFDDEQYHRLLSAGGLSASWAKTLQNRRLSGKIESFSRRLWGRG
>NC_017933.1|WP_014729844.1|4099234_4100440_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLKRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALGPVGLCGMYARRGEVQAARATSAKGIPFTLSTVSVCPIEEVAPVMNRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGTNAAMRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGEKGVANLLNLIEKEMRVAMTLTGAKSIKEITRESLVPSPEFTSVLADLPAASAKPKHDDAA
>NC_017933.1|WP_004385742.1|4098449_4099238_+|transcriptional-regulator-LldR
MTLMTRRLADHLVERIRALITERGLEAGMRLPSERQLAQELGVSRNSLREALQILIRDGLLISRRGGGTFVRYQLEPWSEQRIVQPIRHLMADDPGYRYDILEARHAIEASTAWYAALRATAQDKEKLRYCFDAMLQFTERDDPDLASQADVRFHLAIAEASHNVVLLQTMRGFFDLLQSSVMESRQRMYLQQPIFAQLTGQHREMLEAIETGDAERARNATLRHLGFVHSTIKQLDEDVARQARVTRLPDDVMQPSRENKE
>NC_017933.1|WP_014729851.1|4109369_4110239_+|iron-containing-alcohol-dehydrogenase
MSFMLALPKISLHGAGAIEDMVKLVANKAWGKALIVTDGQLVKLGLLDSLFAALDTHQLSYELFDDVFPNPTEALVQRGFAIWRNAQCDYLIAFGGGSPIDTAKAIKILTANPGASIDYAGVGHVKNPGAPLVAINTTAGTAAEMTSNAVITNEARRVKEVIIDPNLIPDIAVDDASVMLDIPPAITAATGMDALTHAVEAFVSVGAHPLTDANALEAIRLINEWLPKAVEDGHNLEAREQMACGQYLAGMAFNSAGLGLVHALADPCAPCNPRVASRDEVRELYLEAL
>NC_017933.1|WP_014729852.1|4110235_4110550_+|L-rhamnose-mutarotase
MIRKAFVMQVNPDAHDEYQRRHSPIWPELEAVLKAHGAHHYAIWLDAQRHLLFATVEIESEARWNAVAQTEVCQRWWKHMREIMPSNPDNSPVSQELKNVFYLE
>NC_017933.1|WP_014729853.1|4110782_4112045_-|MFS-transporter
MKNTVCTPKHNPNFWIFGLFFFFYFFIMATCFPFLPIWLSDVIGLNKTNTGIVFSCMSLFAIAFQPVLGVISDKLGLKKHLLWIITTLLVLFAPFFLWVFGPLLKVNIWLGALMGGLYIGFCFSSGAGAIEAYIERVSRSSGFEYGKARMFGCLGWGLCASTAGMLFNVNPAIVFWMGSSAALVLMGLLLFARPRANQTAQVMNALGANQPQVTAKMALGLFRLPKLWMFILYVVGVACVYDVFDQQFATFFKSFFPTPQAGTQAFGFATTAGELCNAIIMFCSPWIINRIGAKNTLLIAGTIMATRIIGSAFATNVYEIVALKMLHALEVPFLLVGAFKYITGVFDTRLSATIYLIGFQFAKQMAAIFLSAFAGTMYDRIGFQDTYLILGSFVLAITVVSAFTLTNRRQAVVSEETVKA
>NC_017933.1|WP_014729854.1|4112102_4114226_-|alpha-galactosidase
METRIHRLTSPTTDVVIKTRPFAEILYWGPHLAHFSEHDCASLVRPVANGRLDTDSPVTLMAENGHGLFGAPGLEGHRNGLDASPVFTTQDVNQNGQTLVITSEDATAGLRLVSELSLSDSGVLKVRHGLTNLRDGAWQVDRFAVTLPVAERAFEVMAFHGRWIREFQPHRVTLSHDGFVLENRRGRTSHEHFPALIAGTPGFGEQHGDVWGVHLGWSGNHRLKCEAKTDGRRYLQAEALYLPGEMALATGETLHTPWLYASHSTRGLNGMSQQFHRFLRKEIIRFPGNKPRPVHLNTWEGIYFDHQPEYIMQMATRAAALGVERFIIDDGWFKGRNDDHAALGDWYLDEQKYPNGLIPVINHVKNLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYPKTTGRHQWVLNLNIPDAFEYLLERMSWLLGEHPVDYVKWDMNRELVQPGHAGKAAADAQTRQFYRLLDVLRARFPHVEFESCASGGGRIDFEVLTRTHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNPRCHATFRQHSIEFRGLTALFGHMGLELDPVSAGEQEAAGYQRYAALYKEWRELIHTGDLWRVEMPDAATQVQGVVSQDKTQGLFLVSQLAMPDYTLPGALRVPGLDPQARYQVRLVDHPNIQLTGEGGHTMRKLPGWMDEPVSASGEWLAQAGLQLPVLDPETAMLIAFERV
>NC_017933.1|WP_007899204.1|4114343_4115351_-|LacI-family-DNA-binding-transcriptional-regulator
MSLKAIAAQLGLSVTTVSRALNGYDDVSQETRARVEAEAARRGYRPNTFARRLKMGKIDAVGLVFPVHPVPLNNSVFMEMVGEISRELAQHEVDLLLIADDDLADSHSYMRLVQSRRVDALIVAHTLDNDPRLQQLQTVNFPFLALGRSRLPQPYAWFDFDNYAGTHQATERLIRLGHRRIAMLGEHNSQAFITQRREGWRDALKAHQLDDSGLRMLPPTRRAGYKAVLELMALPAPPTAIVTDCNSLGDGAAMALQTLNRLQGEGAVSLVVYDGLPPDSIVEMDVAAVIQSTREGVGRQIADMVQRLIAGEPAEQLQVLWQPDFLEGSTLHPAD
>NC_017933.1|WP_014729855.1|4115426_4115975_-|helix-turn-helix-transcriptional-regulator
MTQPITLIAQSLVHERTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLMEPQANQTQVIRRGEGPKVVAELANYQAILLATCPPGARRDIYLLLTQPEGERLSQPHPAGSVEHIIVTQGRALVGLAEAPEELHAGDYICYPADRAHVFRALEPDTQAILVAEQN
>NC_017933.1|WP_085959427.1|4116080_4116740_+|AzlC-family-ABC-transporter-permease
MLHRFACLKGDIIKAIVLVCLAVGVVGISYGTLAMAYGFAMWVPLLLSIAVLAGASEFIFIGIVASGGNPLAAAAAGLLVNARHLPFGITVRDLVGRGAKRLLGSHIMNDESVVFGLSQQTPETRKAAYWLCGLGVALCWPLGVVIGVAMGTLLPAPETIGLDAVFPAILLALVLPALKNRTTLIRAGSGAALSLAAVPFAPVGLPVLLSLAGLLTRKK
>NC_017933.1|WP_014729856.1|4116739_4117063_+|AzlD-domain-containing-protein
MASTMMILAGIAVLSVGTYLMRFGGAKLGNKLALSERAQALLSDAATTLLFAVALAATFYEGESFAGMARVLGVGFALFLAWRKAPLIMVIFAAAVVTALLRLAGMP
>NC_017933.1|WP_004385160.1|4117101_4117311_-|DUF1471-domain-containing-protein
MNTIKSFVAVMTLATAFGAFAGQSITATDTTLSGAEAKIAAQAEQMGATYKITEAFTGNQVHMTAELNK
>NC_017933.1|WP_004385161.1|4117441_4118284_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MNKNHPELLQNVTDVTAARSLPLWKRENLTTTEPDWLAEEVPVALVYNGISHVVMMASPKDLEIFALGFSLSEGIVESSHEIYGMDIIHGCNGIEIQVELSSRRFMELKARRRNLAGRTGCGVCGVEQLNDIVRPLAPLPFTQTFSLDNLDGALRQLASVQPVGELTGCTHAAAWLTPQGDIAGGHEDVGRHVALDKLLGRRAREAWQQGAVLVSSRASYEMVQKAATCGVEILFAVSAATTLAVEVAERCNLTLVGFSRPGRATIYTHPQRLIAGDKNA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017933_14	14.4\|3166899\|32\|NC_017933\|CRISPRCasFinder	3166899-3166930	32	NC_017933.1	1790951-1790982	0	1.0
NC_017933_14	14.6\|3167021\|32\|NC_017933\|CRISPRCasFinder	3167021-3167052	32	NC_017933.1	1780632-1780663	0	1.0
NC_017933_14	14.33\|3166899\|33\|NC_017933\|PILER-CR	3166899-3166931	33	NC_017933.1	1790950-1790982	0	1.0
NC_017933_14	14.35\|3167021\|33\|NC_017933\|PILER-CR	3167021-3167053	33	NC_017933.1	1780631-1780663	0	1.0
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NC_017933.1	3531730-3531761	1	0.969
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NC_017933.1	697513-697538	2	0.923

1. spacer 14.4|3166899|32|NC_017933|CRISPRCasFinder matches to position: 1790951-1790982, mismatch: 0, identity: 1.0

ttccagataacaactttccagtttgtctgctt	CRISPR spacer
ttccagataacaactttccagtttgtctgctt	Protospacer
********************************

2. spacer 14.6|3167021|32|NC_017933|CRISPRCasFinder matches to position: 1780632-1780663, mismatch: 0, identity: 1.0

ttaacctgcgctgctgtgattggcgtgatagc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagc	Protospacer
********************************

3. spacer 14.33|3166899|33|NC_017933|PILER-CR matches to position: 1790950-1790982, mismatch: 0, identity: 1.0

ttccagataacaactttccagtttgtctgcttc	CRISPR spacer
ttccagataacaactttccagtttgtctgcttc	Protospacer
*********************************

4. spacer 14.35|3167021|33|NC_017933|PILER-CR matches to position: 1780631-1780663, mismatch: 0, identity: 1.0

ttaacctgcgctgctgtgattggcgtgatagcc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagcc	Protospacer
*********************************

5. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to position: 3531730-3531761, mismatch: 1, identity: 0.969

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
accagcacggattgcgcggttttctcaaggta	Protospacer
********.***********************

6. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to position: 697513-697538, mismatch: 2, identity: 0.923

cgcagcgcacccgccattagcggcgt	CRISPR spacer
cgccgcgcacccgccattagcagcgt	Protospacer
*** *****************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	HQ201308	Cronobacter phage ENT47670, complete genome	24755-24786	0	1.0
NC_017933_14	14.4\|3166899\|32\|NC_017933\|CRISPRCasFinder	3166899-3166930	32	HQ201308	Cronobacter phage ENT47670, complete genome	1038-1069	0	1.0
NC_017933_14	14.6\|3167021\|32\|NC_017933\|CRISPRCasFinder	3167021-3167052	32	HQ201308	Cronobacter phage ENT47670, complete genome	37807-37838	0	1.0
NC_017933_14	14.33\|3166899\|33\|NC_017933\|PILER-CR	3166899-3166931	33	HQ201308	Cronobacter phage ENT47670, complete genome	1037-1069	0	1.0
NC_017933_14	14.35\|3167021\|33\|NC_017933\|PILER-CR	3167021-3167053	33	HQ201308	Cronobacter phage ENT47670, complete genome	37806-37838	0	1.0
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	KY709687	Salmonella phage 29485, complete genome	50901-50932	1	0.969
NC_017933_14	14.19\|3166897\|34\|NC_017933\|CRT	3166897-3166930	34	HQ201308	Cronobacter phage ENT47670, complete genome	1038-1071	2	0.941
NC_017933_14	14.21\|3167019\|34\|NC_017933\|CRT	3167019-3167052	34	HQ201308	Cronobacter phage ENT47670, complete genome	37807-37840	2	0.941
NC_017933_12	12.1\|3102513\|25\|NC_017933\|CRISPRCasFinder	3102513-3102537	25	NZ_CP014514	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence	70320-70344	3	0.88
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	MN855665	Bacteriophage sp. isolate 358, complete genome	5730-5761	3	0.906
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	NC_047875	Salmonella phage UPF_BP1, complete genome	9527-9558	3	0.906
NC_017933_13	13.5\|3140022\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140022-3140053	32	MN103401	Bordetella phage vB_BbrS_PHB09, complete genome	3659-3690	3	0.906
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	CP016946	Yersinia enterocolitica strain YE1 plasmid unnamed1, complete sequence	64283-64308	4	0.846
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP016936	Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence	56167-56192	4	0.846
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP016943	Yersinia enterocolitica strain YE3 plasmid unnamed2, complete sequence	64136-64161	4	0.846
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP016939	Yersinia enterocolitica strain YE5 plasmid unnamed1, complete sequence	64289-64314	4	0.846
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP016933	Yersinia enterocolitica strain YE165 plasmid unnamed2, complete sequence	64527-64552	4	0.846
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP038620	Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence	101068-101093	5	0.808
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	169876-169901	5	0.808
NC_017933_2	2.1\|697565\|26\|NC_017933\|CRISPRCasFinder	697565-697590	26	NZ_CP038617	Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence	7497-7522	5	0.808
NC_017933_7	7.1\|1467032\|31\|NC_017933\|CRISPRCasFinder	1467032-1467062	31	KY860935	Salmonella phage LPST10, complete genome	37615-37645	5	0.839
NC_017933_7	7.1\|1467032\|31\|NC_017933\|CRISPRCasFinder	1467032-1467062	31	MK599416	Salmonella phage Akira, complete genome	38238-38268	5	0.839
NC_017933_7	7.1\|1467032\|31\|NC_017933\|CRISPRCasFinder	1467032-1467062	31	MH791412	UNVERIFIED: Salmonella phage SeSz-2, complete genome	18417-18447	5	0.839
NC_017933_7	7.1\|1467032\|31\|NC_017933\|CRISPRCasFinder	1467032-1467062	31	NC_031924	Salmonella phage IME207, complete genome	4806-4836	5	0.839
NC_017933_10	10.1\|2852828\|25\|NC_017933\|CRISPRCasFinder	2852828-2852852	25	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	974456-974480	5	0.8
NC_017933_10	10.1\|2852828\|25\|NC_017933\|CRISPRCasFinder	2852828-2852852	25	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1071396-1071420	5	0.8
NC_017933_11	11.1\|2910562\|26\|NC_017933\|CRISPRCasFinder	2910562-2910587	26	KT021004	Thermobifida phage P1312, complete genome	21021-21046	6	0.769
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP045374	Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence	57229-57260	6	0.812
NC_017933_14	14.2\|3166776\|33\|NC_017933\|CRISPRCasFinder	3166776-3166808	33	MN694243	Marine virus AFVG_250M276, complete genome	24512-24544	6	0.818
NC_017933_14	14.31\|3166776\|34\|NC_017933\|PILER-CR	3166776-3166809	34	MN694243	Marine virus AFVG_250M276, complete genome	24512-24545	6	0.824
NC_017933_8	8.2\|1544432\|28\|NC_017933\|CRISPRCasFinder	1544432-1544459	28	MG592662	Vibrio phage 2.058.O._10N.286.46.B8, partial genome	18624-18651	7	0.75
NC_017933_8	8.2\|1544432\|28\|NC_017933\|CRISPRCasFinder	1544432-1544459	28	MG592672	Vibrio phage 3.058.O._10N.286.46.B8, partial genome	18562-18589	7	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	MN734436	Aminobacter phage Erebus, complete genome	34462-34493	7	0.781
NC_017933_14	14.3\|3166838\|32\|NC_017933\|CRISPRCasFinder	3166838-3166869	32	NZ_CP045373	Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence	97392-97423	7	0.781
NC_017933_14	14.17\|3166774\|35\|NC_017933\|CRT	3166774-3166808	35	MN694243	Marine virus AFVG_250M276, complete genome	24510-24544	7	0.8
NC_017933_14	14.32\|3166838\|33\|NC_017933\|PILER-CR	3166838-3166870	33	NZ_CP045373	Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence	97392-97424	7	0.788
NC_017933_7	7.1\|1467032\|31\|NC_017933\|CRISPRCasFinder	1467032-1467062	31	MH717097	Escherichia phage C1, complete genome	30540-30570	8	0.742
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	NC_019959	Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence	93023-93054	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP023286	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence	183021-183052	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP018859	Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence	163954-163985	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP018851	Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence	186865-186896	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP018848	Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence	213058-213089	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP018855	Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence	191892-191923	8	0.75
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP018729	Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence	192059-192090	8	0.75
NC_017933_13	13.7\|3140144\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140144-3140175	32	KY385381	Mycobacterium phage EniyanLRS, complete genome	18845-18876	8	0.75
NC_017933_13	13.7\|3140144\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140144-3140175	32	MN585992	Mycobacterium phage MaryV, complete genome	19117-19148	8	0.75
NC_017933_13	13.7\|3140144\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140144-3140175	32	NC_008206	Mycobacteriophage Wildcat, complete genome	19127-19158	8	0.75
NC_017933_13	13.7\|3140144\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140144-3140175	32	KP027195	Mycobacterium phage Cosmo, complete genome	19147-19178	8	0.75
NC_017933_13	13.8\|3140205\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140205-3140236	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	528356-528387	8	0.75
NC_017933_14	14.15\|3167571\|32\|NC_017933\|CRISPRCasFinder	3167571-3167602	32	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	379337-379368	8	0.75
NC_017933_14	14.15\|3167571\|32\|NC_017933\|CRISPRCasFinder	3167571-3167602	32	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	1447912-1447943	8	0.75
NC_017933_13	13.3\|3139900\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139900-3139931	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	578299-578330	9	0.719
NC_017933_13	13.6\|3140083\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140083-3140114	32	NZ_CP021649	Acidovorax sp. T1 plasmid p1-T1, complete sequence	787-818	9	0.719
NC_017933_13	13.8\|3140205\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140205-3140236	32	CP000877	Herpetosiphon aurantiacus DSM 785 plasmid pHAU02, complete sequence	73821-73852	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1859534-1859565	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	731618-731649	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	783161-783192	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1244711-1244742	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1427136-1427167	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	697400-697431	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	854549-854580	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	873438-873469	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1049339-1049370	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	610390-610421	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1202297-1202328	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	771379-771410	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1841396-1841427	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	254619-254650	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	858909-858940	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1182163-1182194	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	786626-786657	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	685962-685993	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	785225-785256	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	972314-972345	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	297100-297131	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	782418-782449	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1202852-1202883	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	858898-858929	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	972281-972312	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	848400-848431	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	893130-893161	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	972282-972313	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	753032-753063	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	848400-848431	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	893130-893161	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	972295-972326	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	848400-848431	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	753055-753086	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	848404-848435	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	893130-893161	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	893130-893161	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	893130-893161	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	972295-972326	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1179015-1179046	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	972284-972315	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	753055-753086	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	787758-787789	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	768452-768483	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	822693-822724	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	859567-859598	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1292030-1292061	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	972284-972315	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	753055-753086	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	848400-848431	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	945074-945105	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	972280-972311	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	753055-753086	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	753055-753086	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	972295-972326	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	893132-893163	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1205814-1205845	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	972306-972337	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	972284-972315	9	0.719
NC_017933_14	14.1\|3166715\|32\|NC_017933\|CRISPRCasFinder	3166715-3166746	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1205814-1205845	9	0.719
NC_017933_14	14.18\|3166836\|34\|NC_017933\|CRT	3166836-3166869	34	NZ_CP045373	Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence	97390-97423	9	0.735
NC_017933_16	16.2\|3450917\|32\|NC_017933\|PILER-CR	3450917-3450948	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	430248-430279	9	0.719
NC_017933_13	13.2\|3139839\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139839-3139870	32	NZ_CP023738	Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence	276099-276130	10	0.688
NC_017933_14	14.5\|3166960\|32\|NC_017933\|CRISPRCasFinder	3166960-3166991	32	NZ_AP014581	Burkholderia sp. RPE67 plasmid p3, complete sequence	99460-99491	10	0.688
NC_017933_14	14.10\|3167266\|32\|NC_017933\|CRISPRCasFinder	3167266-3167297	32	NZ_CP014798	Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence	125883-125914	10	0.688
NC_017933_14	14.10\|3167266\|32\|NC_017933\|CRISPRCasFinder	3167266-3167297	32	NZ_CP014801	Salipiger profundus strain JLT2016 plasmid pTPRO5, complete sequence	90716-90747	10	0.688
NC_017933_14	14.10\|3167266\|32\|NC_017933\|CRISPRCasFinder	3167266-3167297	32	NZ_CP014804	Salipiger profundus strain JLT2016 plasmid pTPRO8, complete sequence	10402-10433	10	0.688
NC_017933_14	14.39\|3167270\|33\|NC_017933\|PILER-CR	3167270-3167302	33	NZ_CP014798	Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence	125882-125914	10	0.697
NC_017933_14	14.39\|3167270\|33\|NC_017933\|PILER-CR	3167270-3167302	33	NZ_CP014801	Salipiger profundus strain JLT2016 plasmid pTPRO5, complete sequence	90715-90747	10	0.697
NC_017933_14	14.39\|3167270\|33\|NC_017933\|PILER-CR	3167270-3167302	33	NZ_CP014804	Salipiger profundus strain JLT2016 plasmid pTPRO8, complete sequence	10401-10433	10	0.697
NC_017933_13	13.1\|3139778\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3139778-3139809	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1197531-1197562	11	0.656
NC_017933_13	13.5\|3140022\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140022-3140053	32	MN850641	Escherichia phage tonijn, complete genome	15573-15604	11	0.656
NC_017933_13	13.8\|3140205\|32\|NC_017933\|PILER-CR,CRISPRCasFinder,CRT	3140205-3140236	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	134293-134324	11	0.656
NC_017933_14	14.7\|3167082\|32\|NC_017933\|CRISPRCasFinder	3167082-3167113	32	NC_015146	Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, complete sequence	141410-141441	11	0.656

1. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
tcagaaagctcgcgaactggtcatcccgcaat	Protospacer
********************************

2. spacer 14.4|3166899|32|NC_017933|CRISPRCasFinder matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

ttccagataacaactttccagtttgtctgctt	CRISPR spacer
ttccagataacaactttccagtttgtctgctt	Protospacer
********************************

3. spacer 14.6|3167021|32|NC_017933|CRISPRCasFinder matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

ttaacctgcgctgctgtgattggcgtgatagc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagc	Protospacer
********************************

4. spacer 14.33|3166899|33|NC_017933|PILER-CR matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

ttccagataacaactttccagtttgtctgcttc	CRISPR spacer
ttccagataacaactttccagtttgtctgcttc	Protospacer
*********************************

5. spacer 14.35|3167021|33|NC_017933|PILER-CR matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

ttaacctgcgctgctgtgattggcgtgatagcc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagcc	Protospacer
*********************************

6. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to KY709687 (Salmonella phage 29485, complete genome) position: , mismatch: 1, identity: 0.969

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
tcagaaagctcgcgaactggtcatccctcaat	Protospacer
*************************** ****

7. spacer 14.19|3166897|34|NC_017933|CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 2, identity: 0.941

ggttccagataacaactttccagtttgtctgctt	CRISPR spacer
ttttccagataacaactttccagtttgtctgctt	Protospacer
  ********************************

8. spacer 14.21|3167019|34|NC_017933|CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 2, identity: 0.941

agttaacctgcgctgctgtgattggcgtgatagc	CRISPR spacer
gtttaacctgcgctgctgtgattggcgtgatagc	Protospacer
. ********************************

9. spacer 12.1|3102513|25|NC_017933|CRISPRCasFinder matches to NZ_CP014514 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.88

accgccctacgaaactgtctgcttc	CRISPR spacer
accgcccaacgaaacggtctgcttg	Protospacer
******* ******* ********

10. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to MN855665 (Bacteriophage sp. isolate 358, complete genome) position: , mismatch: 3, identity: 0.906

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
caagaaagctcgcgaactggtcatccctcaat	Protospacer
. ************************* ****

11. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 3, identity: 0.906

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
taagaaagctcgcgaacttgtcatccctcaat	Protospacer
* **************** ******** ****

12. spacer 13.5|3140022|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to MN103401 (Bordetella phage vB_BbrS_PHB09, complete genome) position: , mismatch: 3, identity: 0.906

gccatttcttcgctggtatcggcgtctggtct	CRISPR spacer
gccatttcttcgccggcatcggcgtctggtcg	Protospacer
*************.**.**************

13. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to CP016946 (Yersinia enterocolitica strain YE1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cgca-gcgcacccgccattagcggcgt	CRISPR spacer
-gcgtgcgcacgcgccattagcggcga	Protospacer
 **. ****** **************

14. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP016936 (Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

cgca-gcgcacccgccattagcggcgt	CRISPR spacer
-gcgtgcgcacgcgccattagcggcga	Protospacer
 **. ****** **************

15. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP016943 (Yersinia enterocolitica strain YE3 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

cgca-gcgcacccgccattagcggcgt	CRISPR spacer
-gcgtgcgcacgcgccattagcggcga	Protospacer
 **. ****** **************

16. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP016939 (Yersinia enterocolitica strain YE5 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cgca-gcgcacccgccattagcggcgt	CRISPR spacer
-gcgtgcgcacgcgccattagcggcga	Protospacer
 **. ****** **************

17. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP016933 (Yersinia enterocolitica strain YE165 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

cgca-gcgcacccgccattagcggcgt	CRISPR spacer
-gcgtgcgcacgcgccattagcggcga	Protospacer
 **. ****** **************

18. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP038620 (Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence) position: , mismatch: 5, identity: 0.808

cgcagcgcacccgccattagcggcgt	CRISPR spacer
atcagcggagccgccattagcggcga	Protospacer
  ***** * ***************

19. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 5, identity: 0.808

cgcagcgcacccgccattagcggcgt	CRISPR spacer
atcagcggagccgccattagcggcga	Protospacer
  ***** * ***************

20. spacer 2.1|697565|26|NC_017933|CRISPRCasFinder matches to NZ_CP038617 (Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence) position: , mismatch: 5, identity: 0.808

cgcagcgcacccgccattagcggcgt	CRISPR spacer
atcagcggagccgccattagcggcga	Protospacer
  ***** * ***************

21. spacer 7.1|1467032|31|NC_017933|CRISPRCasFinder matches to KY860935 (Salmonella phage LPST10, complete genome) position: , mismatch: 5, identity: 0.839

gttggctggcgttacgttatgcttcg-gtgga	CRISPR spacer
gcttgctggcgttacgttatccttcgtgtag-	Protospacer
*.* **************** ***** **.*

22. spacer 7.1|1467032|31|NC_017933|CRISPRCasFinder matches to MK599416 (Salmonella phage Akira, complete genome) position: , mismatch: 5, identity: 0.839

gttggctggcgttacgttatgcttcg-gtgga	CRISPR spacer
gcttgctggcgttacgttatccttcgtgtag-	Protospacer
*.* **************** ***** **.*

23. spacer 7.1|1467032|31|NC_017933|CRISPRCasFinder matches to MH791412 (UNVERIFIED: Salmonella phage SeSz-2, complete genome) position: , mismatch: 5, identity: 0.839

gttggctggcgttacgttatgcttcg-gtgga	CRISPR spacer
gcttgctggcgttacgttatccttcgtgtag-	Protospacer
*.* **************** ***** **.*

24. spacer 7.1|1467032|31|NC_017933|CRISPRCasFinder matches to NC_031924 (Salmonella phage IME207, complete genome) position: , mismatch: 5, identity: 0.839

gttggctggcgttacgttatgcttcg-gtgga	CRISPR spacer
gcttgctggcgttacgttatccttcgtgtag-	Protospacer
*.* **************** ***** **.*

25. spacer 10.1|2852828|25|NC_017933|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 5, identity: 0.8

agcccacggagcggacgttgacgga	CRISPR spacer
tctccacggagcggacgatgacggt	Protospacer
  .************** ******

26. spacer 10.1|2852828|25|NC_017933|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 5, identity: 0.8

agcccacggagcggacgttgacgga	CRISPR spacer
tctccacggagcggacgatgacggt	Protospacer
  .************** ******

27. spacer 11.1|2910562|26|NC_017933|CRISPRCasFinder matches to KT021004 (Thermobifida phage P1312, complete genome) position: , mismatch: 6, identity: 0.769

gcagcgcacccgccacaacccatcta	CRISPR spacer
gcagcgcaccctccacaaccccatac	Protospacer
*********** *********  .

28. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045374 (Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence) position: , mismatch: 6, identity: 0.812

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
gggtgtcatcgccgaggcggcggaccgtgtcg	Protospacer
 .*. **** **************.*******

29. spacer 14.2|3166776|33|NC_017933|CRISPRCasFinder matches to MN694243 (Marine virus AFVG_250M276, complete genome) position: , mismatch: 6, identity: 0.818

gctggttgctgcagcgtacctgctg---cgagcgtt	CRISPR spacer
gctggtagctgcagcttacctgctgagtcaagc---	Protospacer
****** ******** *********   *.***

30. spacer 14.31|3166776|34|NC_017933|PILER-CR matches to MN694243 (Marine virus AFVG_250M276, complete genome) position: , mismatch: 6, identity: 0.824

gctggttgctgcagcgtacctgctg---cgagcgttc	CRISPR spacer
gctggtagctgcagcttacctgctgagtcaagcg---	Protospacer
****** ******** *********   *.****

31. spacer 8.2|1544432|28|NC_017933|CRISPRCasFinder matches to MG592662 (Vibrio phage 2.058.O._10N.286.46.B8, partial genome) position: , mismatch: 7, identity: 0.75

taaaaccaactccatttcccgttagtaa	CRISPR spacer
aatgaccaactccattttccgttagctg	Protospacer
 * .*************.*******. .

32. spacer 8.2|1544432|28|NC_017933|CRISPRCasFinder matches to MG592672 (Vibrio phage 3.058.O._10N.286.46.B8, partial genome) position: , mismatch: 7, identity: 0.75

taaaaccaactccatttcccgttagtaa	CRISPR spacer
aatgaccaactccattttccgttagctg	Protospacer
 * .*************.*******. .

33. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to MN734436 (Aminobacter phage Erebus, complete genome) position: , mismatch: 7, identity: 0.781

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
cttcgtcattggcgaggcggcggatcgtctgg	Protospacer
*  * **** * **************** * *

34. spacer 14.3|3166838|32|NC_017933|CRISPRCasFinder matches to NZ_CP045373 (Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence) position: , mismatch: 7, identity: 0.781

acatccgaactgacacagctcatgcgcggcga	CRISPR spacer
gcttacggactgacacagctcatgcccggcac	Protospacer
.* * **.***************** ****.

35. spacer 14.17|3166774|35|NC_017933|CRT matches to MN694243 (Marine virus AFVG_250M276, complete genome) position: , mismatch: 7, identity: 0.8

gggctggttgctgcagcgtacctgctg---cgagcgtt	CRISPR spacer
gcgctggtagctgcagcttacctgctgagtcaagc---	Protospacer
* ****** ******** *********   *.***

36. spacer 14.32|3166838|33|NC_017933|PILER-CR matches to NZ_CP045373 (Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence) position: , mismatch: 7, identity: 0.788

acatccgaactgacacagctcatgcgcggcgac	CRISPR spacer
gcttacggactgacacagctcatgcccggcacc	Protospacer
.* * **.***************** ****. *

37. spacer 7.1|1467032|31|NC_017933|CRISPRCasFinder matches to MH717097 (Escherichia phage C1, complete genome) position: , mismatch: 8, identity: 0.742

gttggctggcgttacgttatgcttcggtgga	CRISPR spacer
gcttgctggcgttacgttatccttcgtatag	Protospacer
*.* **************** *****   ..

38. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NC_019959 (Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence) position: , mismatch: 8, identity: 0.75

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
gctcaagcctcgcgaactgaccatcccgcaac	Protospacer
 *  **. ***********..**********.

39. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023286 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

40. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018859 (Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

41. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018851 (Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

42. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018848 (Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

43. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018855 (Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

44. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018729 (Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
tcgccacatagccgaggcggcgcatcacctag	Protospacer
. *** **************** ***.. * *

45. spacer 13.7|3140144|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to KY385381 (Mycobacterium phage EniyanLRS, complete genome) position: , mismatch: 8, identity: 0.75

gacaatcttctgcacacgctcatcgacaaaag	CRISPR spacer
gacaatcttctgaacacgatcattaaccttgg	Protospacer
************ ***** ****..**   .*

46. spacer 13.7|3140144|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to MN585992 (Mycobacterium phage MaryV, complete genome) position: , mismatch: 8, identity: 0.75

gacaatcttctgcacacgctcatcgacaaaag	CRISPR spacer
gacaatcttctgaacacgatcattaaccttgg	Protospacer
************ ***** ****..**   .*

47. spacer 13.7|3140144|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NC_008206 (Mycobacteriophage Wildcat, complete genome) position: , mismatch: 8, identity: 0.75

gacaatcttctgcacacgctcatcgacaaaag	CRISPR spacer
gacaatcttctgaacacgatcattaaccttgg	Protospacer
************ ***** ****..**   .*

48. spacer 13.7|3140144|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to KP027195 (Mycobacterium phage Cosmo, complete genome) position: , mismatch: 8, identity: 0.75

gacaatcttctgcacacgctcatcgacaaaag	CRISPR spacer
gacaatcttctgaacacgatcattaaccttgg	Protospacer
************ ***** ****..**   .*

49. spacer 13.8|3140205|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

attgacca--catccagatccgcaacgcgaccgt	CRISPR spacer
--cggcgaggcatccagacccgcagcgcgaccgg	Protospacer
  .*.* *  ********.*****.********

50. spacer 14.15|3167571|32|NC_017933|CRISPRCasFinder matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

tagcttgcgggttgaacaaagctgcaaatatt	CRISPR spacer
tgcctcgcgggttgaacaaacctgcacgcatc	Protospacer
*. **.************** ***** ..**.

51. spacer 14.15|3167571|32|NC_017933|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

tagcttgcgggttgaacaaagctgcaaatatt	CRISPR spacer
tgcctcgcgggttgaacaaacctgcacgcatc	Protospacer
*. **.************** ***** ..**.

52. spacer 13.3|3139900|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ttggcgcgtttattccaggacgcgtagtcgcg	CRISPR spacer
ctggcgcgttttttcgaggacgcgcgggaatg	Protospacer
.********** *** ********..*  ..*

53. spacer 13.6|3140083|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021649 (Acidovorax sp. T1 plasmid p1-T1, complete sequence) position: , mismatch: 9, identity: 0.719

tttgacccgtgcctccagttgatttacacgtt	CRISPR spacer
gttgacccctgcctccatttgattaagatcaa	Protospacer
 ******* ******** ****** * *.

54. spacer 13.8|3140205|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to CP000877 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU02, complete sequence) position: , mismatch: 9, identity: 0.719

attgaccacatccagatccgcaacgcgaccgt	CRISPR spacer
gcgatccacatccagatccgcaacgaggccca	Protospacer
.. . ******************** *.**

55. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

56. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

57. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

58. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

59. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

60. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

61. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

62. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

63. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

64. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

65. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

66. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

67. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

68. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

69. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

70. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

71. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

72. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

73. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

74. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

75. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

76. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

77. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

78. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

79. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

80. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

81. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

82. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

83. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

84. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

85. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

86. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

87. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

88. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

89. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

90. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

91. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

92. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

93. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

94. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

95. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

96. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

97. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

98. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

99. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

100. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

101. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

102. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

103. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

104. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

105. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

106. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

107. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

108. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

109. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

110. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

111. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

112. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

113. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

114. spacer 14.1|3166715|32|NC_017933|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

accagcacagattgcgcggttttctcaaggta	CRISPR spacer
tcccgcactgattgcgcggttttccgcggaga	Protospacer
 ** **** ***************.  .*. *

115. spacer 14.18|3166836|34|NC_017933|CRT matches to NZ_CP045373 (Sulfitobacter sp. THAF37 plasmid pTHAF37_a, complete sequence) position: , mismatch: 9, identity: 0.735

agacatccgaactgacacagctcatgcgcggcga	CRISPR spacer
gcgcttacggactgacacagctcatgcccggcac	Protospacer
. .* * **.***************** ****.

116. spacer 16.2|3450917|32|NC_017933|PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gagtatcagcggaggaaagcggcaggcatcgt	CRISPR spacer
gagtatcagcggatgaaggcggcgctgatgcc	Protospacer
************* ***.*****.   **  .

117. spacer 13.2|3139839|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023738 (Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence) position: , mismatch: 10, identity: 0.688

cagcctcatagccgaggcggcggatcgtgtcg	CRISPR spacer
gcatgcgatagccgaggccgcggatcgtttct	Protospacer
  .. . *********** ********* **

118. spacer 14.5|3166960|32|NC_017933|CRISPRCasFinder matches to NZ_AP014581 (Burkholderia sp. RPE67 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ggtaagcccgttaatcgcatccacatcatgcc	CRISPR spacer
gaggcgcgcgttcatcgcatccacatcagcga	Protospacer
*. . ** **** ***************

119. spacer 14.10|3167266|32|NC_017933|CRISPRCasFinder matches to NZ_CP014798 (Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgttctgcggtcattaacgtgcgcgccacat	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacat	Protospacer
 * .  ...******.*** ************

120. spacer 14.10|3167266|32|NC_017933|CRISPRCasFinder matches to NZ_CP014801 (Salipiger profundus strain JLT2016 plasmid pTPRO5, complete sequence) position: , mismatch: 10, identity: 0.688

gcgttctgcggtcattaacgtgcgcgccacat	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacat	Protospacer
 * .  ...******.*** ************

121. spacer 14.10|3167266|32|NC_017933|CRISPRCasFinder matches to NZ_CP014804 (Salipiger profundus strain JLT2016 plasmid pTPRO8, complete sequence) position: , mismatch: 10, identity: 0.688

gcgttctgcggtcattaacgtgcgcgccacat	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacat	Protospacer
 * .  ...******.*** ************

122. spacer 14.39|3167270|33|NC_017933|PILER-CR matches to NZ_CP014798 (Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgcggtcattaacgtgcgcgccacatc	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacatc	Protospacer
 * .  ...******.*** *************

123. spacer 14.39|3167270|33|NC_017933|PILER-CR matches to NZ_CP014801 (Salipiger profundus strain JLT2016 plasmid pTPRO5, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgcggtcattaacgtgcgcgccacatc	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacatc	Protospacer
 * .  ...******.*** *************

124. spacer 14.39|3167270|33|NC_017933|PILER-CR matches to NZ_CP014804 (Salipiger profundus strain JLT2016 plasmid pTPRO8, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgcggtcattaacgtgcgcgccacatc	CRISPR spacer
ccccggcatggtcatcaacctgcgcgccacatc	Protospacer
 * .  ...******.*** *************

125. spacer 13.1|3139778|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

tcagaaagctcgcgaactggtcatcccgcaat	CRISPR spacer
cggcaaagctcgcgacctgttcatccctggga	Protospacer
. . *********** *** *******  ..

126. spacer 13.5|3140022|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to MN850641 (Escherichia phage tonijn, complete genome) position: , mismatch: 11, identity: 0.656

gccatttcttcgctggtatcggcgtctggtct	CRISPR spacer
ctcatttcttcgctagtataggcgttaaaatc	Protospacer
 .************.**** *****. .. ..

127. spacer 13.8|3140205|32|NC_017933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 11, identity: 0.656

attgaccacatccagatccgcaacgcgaccgt	CRISPR spacer
ggcgaccacatccagaaccgcatcgccgagtc	Protospacer
. .************* ***** *** .   .

128. spacer 14.7|3167082|32|NC_017933|CRISPRCasFinder matches to NC_015146 (Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, complete sequence) position: , mismatch: 11, identity: 0.656

tgggggccgcaccggcaccactccatagcacc	CRISPR spacer
ccacaaccgcaccggcaccacaccacagctag	Protospacer
. . ..*************** ***.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

911625 : 950428

Cronobacter_phage(97.96%)

terminase,tail,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014728198.1\|911625_912444_-	hypothetical protein	I6PD67	Cronobacter_phage	2.2e-152	100.0
WP_014728199.1\|912447_912696_-	hypothetical protein	I6PCV4	Cronobacter_phage	1.1e-35	100.0
WP_014728200.1\|912955_914134_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	3.5e-228	100.0
WP_014728202.1\|914426_915083_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	5.6e-127	100.0
WP_014728203.1\|915090_915399_-	hypothetical protein	I6PD68	Cronobacter_phage	1.1e-51	100.0
WP_014728204.1\|915395_916496_-	AAA family ATPase	I6PCV5	Cronobacter_phage	6.4e-216	100.0
WP_014728205.1\|916495_916786_-	hypothetical protein	I6PDJ2	Cronobacter_phage	4.3e-47	100.0
WP_014728206.1\|916883_917090_-	phage encoded cell division inhibitor protein	I6PBM9	Cronobacter_phage	7.8e-35	100.0
WP_071819680.1\|917433_917721_+	hypothetical protein	NA	NA	NA	NA
WP_014728207.1\|917691_917979_-	hypothetical protein	I6PDF6	Cronobacter_phage	8.9e-45	100.0
WP_014728208.1\|918284_918689_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.4e-67	100.0
WP_032984179.1\|918763_918964_+	Cro/Cl family transcriptional regulator	Q5G8T3	Enterobacteria_phage	2.2e-10	54.4
WP_014728209.1\|919042_919375_+	hypothetical protein	I6PCV6	Cronobacter_phage	1.2e-53	100.0
WP_014728210.1\|919494_920274_+	replication protein	I6PDJ3	Cronobacter_phage	3.9e-127	100.0
WP_014728211.1\|920270_920993_+	replication protein	I6PBN0	Cronobacter_phage	4.0e-134	100.0
WP_007668845.1\|921005_921314_+	hypothetical protein	I6PDF7	Cronobacter_phage	1.4e-51	100.0
WP_014728212.1\|922069_922525_+	YbcN family protein	I6PD71	Cronobacter_phage	4.1e-84	100.0
WP_007850319.1\|922528_922729_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.9e-33	100.0
WP_032970690.1\|922731_923019_+	DUF1364 domain-containing protein	I6PDJ4	Cronobacter_phage	7.1e-50	98.9
WP_014728214.1\|923015_923378_+	RusA family crossover junction endodeoxyribonuclease	I6PBN1	Cronobacter_phage	1.2e-65	100.0
WP_014728215.1\|923374_924079_+	antitermination protein	I6PDF8	Cronobacter_phage	5.3e-131	100.0
WP_014728216.1\|924269_925049_+	protein kinase	I6PD73	Cronobacter_phage	4.0e-148	100.0
WP_014728217.1\|925045_925789_+	protein phosphatase 2C domain-containing protein	I6PCV8	Cronobacter_phage	8.0e-138	100.0
WP_014728218.1\|926023_926308_+	hypothetical protein	I6PDJ5	Cronobacter_phage	2.1e-46	100.0
WP_041460823.1\|926304_926811_+	lysozyme	I6PBN2	Cronobacter_phage	5.9e-84	99.4
WP_014728220.1\|926814_927261_+\|lysis	lysis protein	I6PDF9	Cronobacter_phage	5.8e-75	100.0
WP_014728221.1\|927300_927909_+	DUF2441 domain-containing protein	I6PCV9	Cronobacter_phage	3.4e-118	100.0
WP_071819681.1\|928192_928411_-	hypothetical protein	NA	NA	NA	NA
WP_014728222.1\|928432_928957_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	1.5e-93	100.0
WP_014728223.1\|928956_930447_+	hypothetical protein	I6PBN3	Cronobacter_phage	7.4e-300	100.0
WP_014728224.1\|930446_931862_+	DUF4055 domain-containing protein	I6PDG0	Cronobacter_phage	8.9e-271	100.0
WP_014728225.1\|931845_932949_+	hypothetical protein	I6PD76	Cronobacter_phage	2.3e-205	100.0
WP_014728226.1\|933024_933708_+	hypothetical protein	I6PCW0	Cronobacter_phage	1.6e-100	100.0
WP_014728227.1\|933707_934670_+	hypothetical protein	I6PDJ7	Cronobacter_phage	9.6e-176	100.0
WP_014728228.1\|934681_934933_+	Ig-like domain-containing protein	I6PBN5	Cronobacter_phage	3.0e-36	100.0
WP_007850271.1\|934973_935456_+	hypothetical protein	I6PDG1	Cronobacter_phage	2.5e-87	100.0
WP_014728229.1\|935459_935810_+	hypothetical protein	I6PD77	Cronobacter_phage	2.9e-61	100.0
WP_014728230.1\|935811_936225_+	HK97 gp10 family phage protein	I6PCW1	Cronobacter_phage	2.3e-70	100.0
WP_014728231.1\|936221_936635_+	hypothetical protein	I6PDJ8	Cronobacter_phage	4.1e-75	100.0
WP_007850264.1\|936684_937638_+	Ig-like domain-containing protein	I6PBN6	Cronobacter_phage	6.9e-166	100.0
WP_007850262.1\|937677_937989_+	hypothetical protein	I6PDG2	Cronobacter_phage	3.0e-54	100.0
WP_044594635.1\|938036_938303_+	DUF1799 domain-containing protein	I6PD79	Cronobacter_phage	1.1e-36	98.6
WP_014728232.1\|938299_941020_+\|tail	phage tail tape measure protein	I6PCW3	Cronobacter_phage	0.0e+00	100.0
WP_014728233.1\|941104_941674_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	1.1e-99	100.0
WP_007850248.1\|941738_942086_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	2.2e-61	100.0
WP_014728234.1\|942082_942859_+\|tail	phage minor tail protein L	I6PDG3	Cronobacter_phage	1.6e-152	100.0
WP_014728235.1\|942861_943581_+	C40 family peptidase	I6PD81	Cronobacter_phage	2.0e-149	100.0
WP_014728236.1\|943577_944168_+\|tail	tail assembly protein	I6PCW4	Cronobacter_phage	1.6e-104	100.0
WP_014728237.1\|944218_947527_+	host specificity protein J	I6PDK0	Cronobacter_phage	0.0e+00	100.0
WP_014728238.1\|947529_948486_+	hypothetical protein	I6PBN9	Cronobacter_phage	2.3e-185	100.0
WP_014728239.1\|948544_950428_+\|tail	tail fiber domain-containing protein	I6PDG4	Cronobacter_phage	2.8e-296	100.0

DBSCAN-SWA_2

1336708 : 1382659

Cronobacter_phage(26.53%)

capsid,head,terminase,tail,portal,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014728426.1\|1336708_1337893_-	recombinase	A0A2D1GN00	Marinobacter_phage	3.7e-36	32.1
WP_014728427.1\|1337894_1338104_-	hypothetical protein	NA	NA	NA	NA
WP_014728428.1\|1338139_1338418_-	hypothetical protein	K7PKM4	Enterobacterial_phage	2.5e-07	41.9
WP_014728429.1\|1338417_1338657_-	hypothetical protein	G8C7S3	Escherichia_phage	4.2e-16	63.1
WP_014728430.1\|1338653_1339295_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	4.2e-50	47.2
WP_014728431.1\|1339291_1340374_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.0e-149	72.1
WP_014728432.1\|1340370_1341015_-	hypothetical protein	NA	NA	NA	NA
WP_041460832.1\|1341110_1342040_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	6.4e-100	61.3
WP_007901036.1\|1342770_1343649_+	BRCT domain-containing protein	U3PB51	Vibrio_phage	4.2e-37	33.8
WP_014728434.1\|1343640_1344330_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	9.4e-40	42.4
WP_012124208.1\|1344465_1344687_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014728435.1\|1344737_1345289_+	hypothetical protein	A0A1C9II13	Salmonella_phage	1.4e-65	68.5
WP_014728436.1\|1345455_1345623_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	9.5e-07	46.0
WP_014728437.1\|1345619_1346492_+	conserved phage C-terminal domain-containing protein	U5P0A0	Shigella_phage	1.2e-44	52.6
WP_014728438.1\|1346488_1346923_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_080576583.1\|1346919_1348098_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.3e-105	82.4
WP_014728440.1\|1348094_1348424_+	LexA family transcriptional regulator	U5P451	Shigella_phage	2.8e-18	47.1
WP_004388343.1\|1348420_1348804_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.2e-51	77.2
WP_014728441.1\|1348819_1349545_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	7.5e-56	55.3
WP_041460833.1\|1349541_1350591_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.9e-133	65.3
WP_014728443.1\|1350609_1351368_+	antitermination protein	A0A192Y5X6	Salmonella_phage	5.4e-81	60.7
WP_071817998.1\|1351659_1351896_+	ParD-like family protein	NA	NA	NA	NA
WP_041460694.1\|1351864_1352206_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014728444.1\|1352348_1352729_+\|holin	phage holin family protein	F1C592	Cronobacter_phage	1.8e-61	99.2
WP_007709085.1\|1352715_1353000_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.9e-19	54.3
WP_014728445.1\|1352996_1353620_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	5.8e-97	85.0
WP_041460928.1\|1353627_1353840_+	hypothetical protein	A0A2P9HXL2	Yersinia_phage	4.5e-09	41.8
WP_014728447.1\|1353839_1354109_+	hypothetical protein	NA	NA	NA	NA
WP_014728448.1\|1354299_1354689_+	hypothetical protein	Q71TL7	Escherichia_phage	1.4e-29	51.6
WP_014728449.1\|1354834_1355116_+	hypothetical protein	G8C7W3	Escherichia_phage	7.7e-33	75.3
WP_014728450.1\|1355271_1355742_-	hypothetical protein	NA	NA	NA	NA
WP_041460835.1\|1355816_1356167_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.9e-49	78.9
WP_014728452.1\|1356553_1357051_+\|terminase	phage terminase small subunit P27 family	A0A1W6JP17	Morganella_phage	9.1e-61	70.9
WP_014728453.1\|1357054_1358785_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	2.3e-276	78.2
WP_014728454.1\|1358784_1360089_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-221	87.6
WP_014728455.1\|1360097_1360952_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.6e-116	75.7
WP_014728456.1\|1360965_1362186_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	8.7e-206	93.1
WP_012124229.1\|1362239_1362422_+	hypothetical protein	K7PHI6	Enterobacteria_phage	7.4e-13	89.5
WP_012124230.1\|1362431_1362758_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	1.1e-25	51.9
WP_012124231.1\|1362754_1363096_+\|head	phage head closure protein	NA	NA	NA	NA
WP_014728457.1\|1363092_1363542_+	HK97 gp10 family phage protein	A0A220NRP5	Escherichia_phage	3.9e-63	85.2
WP_014728458.1\|1363538_1363868_+	DUF3168 domain-containing protein	A0A1P8DTJ3	Proteus_phage	9.3e-22	53.6
WP_012124234.1\|1363915_1364371_+	hypothetical protein	A0A1W6JP06	Morganella_phage	4.0e-55	74.3
WP_014728459.1\|1364421_1364817_+\|tail	phage tail protein	F1C576	Cronobacter_phage	6.3e-57	87.0
WP_014728460.1\|1364840_1365110_+	DUF4035 domain-containing protein	K7PLY6	Enterobacterial_phage	1.4e-23	64.4
WP_014728461.1\|1365181_1365523_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	1.1e-33	65.5
WP_041460837.1\|1365578_1368851_+\|tail	phage tail tape measure protein	F1C575	Cronobacter_phage	0.0e+00	93.2
WP_014728463.1\|1368896_1369235_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	2.5e-38	62.5
WP_014728464.1\|1369241_1369994_+\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	3.4e-144	98.8
WP_014728465.1\|1369996_1370701_+	C40 family peptidase	F1C573	Cronobacter_phage	5.3e-139	97.4
WP_014728466.1\|1370697_1371294_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.1e-102	98.0
WP_041460929.1\|1371344_1374551_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	96.7
WP_014728468.1\|1374553_1375510_+	hypothetical protein	I6PBN9	Cronobacter_phage	3.3e-120	63.6
WP_158309847.1\|1375546_1376437_+\|tail	tail fiber protein	F1C569	Cronobacter_phage	8.6e-54	78.3
WP_014728469.1\|1376436_1377018_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-33	41.7
WP_014728470.1\|1377376_1377814_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	9.4e-78	100.0
WP_014728471.1\|1377797_1379063_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.2e-242	97.9
WP_014728472.1\|1379509_1381273_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_014728473.1\|1381292_1381520_-	YejL family protein	NA	NA	NA	NA
WP_004387432.1\|1381654_1382659_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	1.3e-85	48.3

DBSCAN-SWA_3

1772907 : 1797167

Cronobacter_phage(100.0%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014728673.1\|1772907_1773465_+\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	9.7e-88	88.1
WP_041460850.1\|1773451_1774915_+	phage DNA Packaging protein	G0ZND4	Cronobacter_phage	1.7e-280	99.4
WP_014728675.1\|1774926_1776384_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	3.8e-256	94.8
WP_124813642.1\|1777321_1777708_-	hypothetical protein	NA	NA	NA	NA
WP_014728678.1\|1777687_1778881_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	4.4e-162	74.2
WP_014728679.1\|1778886_1779315_+	hypothetical protein	F1C5E0	Cronobacter_phage	3.4e-72	99.3
WP_014728680.1\|1779327_1780419_+	hypothetical protein	F1C5E1	Cronobacter_phage	1.2e-203	97.2
WP_007847581.1\|1780428_1780626_+	hypothetical protein	NA	NA	NA	NA
WP_007847582.1\|1780628_1781009_+	hypothetical protein	F1C5E2	Cronobacter_phage	1.9e-63	100.0
WP_014728681.1\|1781076_1781427_+	hypothetical protein	G0ZNE2	Cronobacter_phage	6.6e-42	69.6
WP_014728682.1\|1781593_1781962_+	hypothetical protein	F1C5E3	Cronobacter_phage	2.2e-59	98.4
WP_014728683.1\|1781958_1782342_+	hypothetical protein	F1C5E4	Cronobacter_phage	3.8e-67	96.1
WP_014728684.1\|1782365_1782860_+	hypothetical protein	F1C5E5	Cronobacter_phage	1.1e-87	98.8
WP_014728685.1\|1782899_1784357_+	glycosyltransferase	F1C5E6	Cronobacter_phage	2.0e-281	95.1
WP_014728686.1\|1784338_1784932_+	hypothetical protein	F1C5E7	Cronobacter_phage	9.0e-108	92.4
WP_148268871.1\|1784913_1785645_+	hypothetical protein	F1C5E8	Cronobacter_phage	1.8e-121	93.9
WP_014728688.1\|1785693_1785987_+	hypothetical protein	NA	NA	NA	NA
WP_014728689.1\|1786045_1788511_+\|tail	phage tail length tape measure family protein	F1C5E9	Cronobacter_phage	0.0e+00	89.0
WP_014728690.1\|1788510_1789008_+	hypothetical protein	F1C5F0	Cronobacter_phage	4.3e-95	97.0
WP_014728691.1\|1789007_1789478_+	hypothetical protein	F1C5F1	Cronobacter_phage	7.4e-81	95.5
WP_050980445.1\|1789440_1789857_+	C40 family peptidase	F1C5F2	Cronobacter_phage	1.3e-76	95.7
WP_014728693.1\|1789843_1792321_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	98.2
WP_014728694.1\|1792377_1794366_+	hypothetical protein	F1C5A8	Cronobacter_phage	4.9e-65	32.4
WP_014728695.1\|1794422_1795886_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_014728696.1\|1795878_1796808_-	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	1.3e-161	92.4
WP_014728697.1\|1796804_1797167_-	GtrA family protein	F1C5B1	Cronobacter_phage	2.2e-56	96.7

DBSCAN-SWA_4

2429261 : 2439459

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014729070.1\|2429261_2429726_-	C40 family peptidase	S5MM68	Bacillus_phage	1.0e-10	36.0
WP_041460872.1\|2429803_2430547_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.6e-08	28.5
WP_004387815.1\|2430549_2431101_-	glutathione peroxidase	NA	NA	NA	NA
WP_014729072.1\|2431130_2432132_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_004387086.1\|2432209_2432509_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_014729073.1\|2432513_2434901_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.6e-07	27.1
WP_007867262.1\|2434916_2435900_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_106120997.1\|2436119_2436164_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124849.1\|2436285_2436642_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2436689_2436887_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_012905609.1\|2436984_2437527_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	32.3
WP_004387090.1\|2437530_2439459_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.6

Anti-CRISPR protein detection

Acr_ID: NC_017933.1|WP_014728684.1|1782365_1782860_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017933.1|WP_014728684.1|1782365_1782860_+|hypothetical-protein

1782365_1782860_+

164 aa aa

1772907-1797167

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NC_017933_14	Orphan	14.4\|3166899\|32\|NC_017933\|CRISPRCasFinder	3166899-3166930	32	1790982-1790951
NC_017933_14	Orphan	14.6\|3167021\|32\|NC_017933\|CRISPRCasFinder	3167021-3167052	32	1780663-1780632
NC_017933_14	Orphan	14.33\|3166899\|33\|NC_017933\|PILER-CR	3166899-3166931	33	1790982-1790950
NC_017933_14	Orphan	14.35\|3167021\|33\|NC_017933\|PILER-CR	3167021-3167053	33	1780663-1780631

1. spacer 14.4|3166899|32|NC_017933|CRISPRCasFinder matches to NC_017933 position: 1790982-1790951, mismatch: 0

ttccagataacaactttccagtttgtctgctt	CRISPR spacer
ttccagataacaactttccagtttgtctgctt	Protospacer
********************************

2. spacer 14.6|3167021|32|NC_017933|CRISPRCasFinder matches to NC_017933 position: 1780663-1780632, mismatch: 0

ttaacctgcgctgctgtgattggcgtgatagc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagc	Protospacer
********************************

3. spacer 14.33|3166899|33|NC_017933|PILER-CR matches to NC_017933 position: 1790982-1790950, mismatch: 0

ttccagataacaactttccagtttgtctgcttc	CRISPR spacer
ttccagataacaactttccagtttgtctgcttc	Protospacer
*********************************

4. spacer 14.35|3167021|33|NC_017933|PILER-CR matches to NC_017933 position: 1780663-1780631, mismatch: 0

ttaacctgcgctgctgtgattggcgtgatagcc	CRISPR spacer
ttaacctgcgctgctgtgattggcgtgatagcc	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017933

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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