CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017027	Pasteurella multocida subsp. multocida str. HN06, complete sequence	3 crisprs	DEDDh,cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DinG,csa3	3	18	6	2
NC_017035	Pasteurella multocida subsp. multocida str. HN06 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017027_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017027_1

341386-341833

TypeI-F

Consensus_repeat	Method
AGTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

7 spacers

cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

The CRISPR arrays of NC_017027_1

>merge|NC_017027|1|341386-341833|CRISPRCasFinder,PILER-CR,CRT
AGTTCACCATCGTGTAGATGGCTTAGAAATCGTTACCTGCGGGCGTTCGAATACAGCGGGAGTTCACCATCGTGTAGATGGCTTAGAAAGTTTAAAGCGCCTGATTTTTATCAATATCCAAGTTCACCATCGTGTAGATGGCTTAGAAATAATGGCGCACCAGTGTCACAAGAGTTCACTTGTTCACCATCGTGTAGATGGCTTAGAAATTTAATTTTTAAAAAAGCGGTCACGCCGGAAGGTTCACCATCGTGTAGATGGCTTAGAAATTCATCGTGGACTGTTCAAAAGAAGTCGAGAAGTTCACCATCGTGTGGATGGCTTAGAAAATATCTGCAAAGTTCGTCACAAAGACTGGAGTGTTCACTATCGTGTAGATAGCTTAAAAAACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACC

>NC_017027|1|1|341386-341774|CRISPRCasFinder
AGTTCACCATCGTGTAGATGGCTTAGAAA	TCGTTACCTGCGGGCGTTCGAATACAGCGGG
AGTTCACCATCGTGTAGATGGCTTAGAAA	GTTTAAAGCGCCTGATTTTTATCAATATCCA
AGTTCACCATCGTGTAGATGGCTTAGAAA	TAATGGCGCACCAGTGTCACAAGAGTTCACT
TGTTCACCATCGTGTAGATGGCTTAGAAA	TTTAATTTTTAAAAAAGCGGTCACGCCGGAA
GGTTCACCATCGTGTAGATGGCTTAGAAA	TTCATCGTGGACTGTTCAAAAGAAGTCGAGA
AGTTCACCATCGTGTGGATGGCTTAGAAA	ATATCTGCAAAGTTCGTCACAAAGACTGGAG
TGTTCACTATCGTGTAGATAGCTTAAAAA

>NC_017027|1|1|341387-341714|PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	TCGTTACCTGCGGGCGTTCGAATACAGCGGGA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTTAAAGCGCCTGATTTTTATCAATATCCAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TAATGGCGCACCAGTGTCACAAGAGTTCACTT
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG
GTTCACCATCGTGTAGATGGCTTAGAAA	TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA
GTTCACCATCGTGTGGATGGCTTAGAAA

>NC_017027|1|1|341387-341833|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	TCGTTACCTGCGGGCGTTCGAATACAGCGGGA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTTAAAGCGCCTGATTTTTATCAATATCCAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TAATGGCGCACCAGTGTCACAAGAGTTCACTT
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG
GTTCACCATCGTGTAGATGGCTTAGAAA	TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA
GTTCACCATCGTGTGGATGGCTTAGAAA	ATATCTGCAAAGTTCGTCACAAAGACTGGAGT
GTTCACTATCGTGTAGATAGCTTAAAAA	ACTCATAATCGGAAGAGAGCGAGTTCGAATC
GTTCATTATAGACTAGATAGTGTAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017027.1\|WP_014390881.1\|332771_334820_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NC_017027.1\|WP_014390888.1\|342904_346225_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NC_017027.1\|WP_005721326.1\|350745_351210_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NC_017027.1\|WP_014390890.1\|351257_352472_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_017027.1\|WP_014390891.1\|352703_353090_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NC_017027.1\|WP_014390889.1\|346282_348139_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NC_017027.1\|WP_014390885.1\|339673_340684_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_017027.1\|WP_014390879.1\|328012_330904_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NC_017027.1\|WP_014390882.1\|334953_337113_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_017027.1\|WP_005725867.1\|348279_348870_+\|hypothetical-protein	unknown	unknown	unknown
NC_017027.1\|WP_014390883.1\|337343_338678_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NC_017027.1\|WP_005725868.1\|348933_349737_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NC_017027.1\|WP_014390884.1\|338687_339671_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|274204
NC_017027.1\|WP_014390886.1\|340686_341247_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202
NC_017027.1\|WP_014390878.1\|327455_327971_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NC_017027.1\|WP_014390880.1\|331477_332590_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NC_017027.1\|WP_005721273.1\|331070_331340_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_017027.1\|WP_005751243.1\|349950_350667_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NC_017027.1\|WP_005721379.1\|353159_353483_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NC_017027.1\|WP_014390887.1\|341943_342924_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849

Protein	Function_ID	Function_description	E-value
NC_017027.1\|WP_014390881.1\|332771_334820_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NC_017027.1\|WP_014390888.1\|342904_346225_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_017027.1\|WP_005721326.1\|350745_351210_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
NC_017027.1\|WP_014390890.1\|351257_352472_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_017027.1\|WP_014390891.1\|352703_353090_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.77525e-94
NC_017027.1\|WP_014390889.1\|346282_348139_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NC_017027.1\|WP_014390885.1\|339673_340684_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_017027.1\|WP_014390879.1\|328012_330904_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.36655e-112
NC_017027.1\|WP_014390882.1\|334953_337113_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_017027.1\|WP_014390883.1\|337343_338678_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.93349e-152
NC_017027.1\|WP_005725868.1\|348933_349737_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	5.93151e-152
NC_017027.1\|WP_014390884.1\|338687_339671_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.11146e-148
NC_017027.1\|WP_014390886.1\|340686_341247_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	7.71836e-91
NC_017027.1\|WP_014390878.1\|327455_327971_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	9.3274e-95
NC_017027.1\|WP_014390880.1\|331477_332590_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NC_017027.1\|WP_005721273.1\|331070_331340_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85836e-50
NC_017027.1\|WP_005751243.1\|349950_350667_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	5.62391e-118
NC_017027.1\|WP_005721379.1\|353159_353483_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
NC_017027.1\|WP_014390887.1\|341943_342924_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0

>NC_017027.1|WP_014390886.1|340686_341247_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPWSTEHRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>NC_017027.1|WP_014390885.1|339673_340684_+|type-I-F-CRISPR-associated-protein-Csy3
MSKKLATPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNPITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTIHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVSNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>NC_017027.1|WP_014390884.1|338687_339671_+|type-I-F-CRISPR-associated-protein-Csy2
MFQTDFYILFDHIKVQSANSISGPLSYGFPALTGLTGAVHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGEPASIIEEGKIHLDLSLVVEVHVQDDRVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELANITEELKTGLRIGQLDEEGNVQKSCLPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPFPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYSAPQNNLYLISQGE
>NC_017027.1|WP_014390883.1|337343_338678_+|type-I-F-CRISPR-associated-protein-Csy1
MSYTFRKRIDLFLQEQNLKKSESDRKKLAKATDPTEIEQLTQLIQEFDQKYQFDTWIANAANVMAKQLKFGTHIAKGIHPDTKGDNVNFQPSDSLPPEYVGSQSISHLVLDANGNAAALPLASFFNFIVDEEKQVKLRDLLLADDPRLAGCFSDDLALSDVYKKQFQQALTGDLTQPETHERNKQVFWANGENPIEDDDYTCLIPLYPSSLTHAFYQKVNNNRYSEQNKKASINRYKKNTEQEHYRSINGLAIVSLGGGNSQNVSQLNNLQKGRHYLLPSLPPIMKASRQFQLSPSQTTIFNDRLAYACCYGLRQLFEVIKAHKNISEVRDNRKDALDIILQSVLRIASVLQKQPVGWSKDYQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKRLQKRFPHIAKDFDDAEYHEWRRNIRRTLRYRLRHP
>NC_017027.1|WP_014390882.1|334953_337113_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAEQAFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWQQGDVAALKNPFVEEKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFSDWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHISARTTASDENTQNLPEIDRTLSATQVAVDFANRLQKNSKKIEKWARQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGEMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNELEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>NC_017027.1|WP_014390881.1|332771_334820_+|methionine--tRNA-ligase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENEALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDPKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGADLFLLNADHGVKPGMQVK
>NC_017027.1|WP_014390880.1|331477_332590_-|iron-sulfur-cluster-carrier-protein-ApbC
MGILFSDSLTDSQKQAIQNTFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQLKSTLSAELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQKQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALHIRLREDLDKGIPTVVAAPESDTAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>NC_017027.1|WP_005721273.1|331070_331340_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFATHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLELYTSTIARLGLRR
>NC_017027.1|WP_014390879.1|328012_330904_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MRTTTIKFSAITLALLSYCGAILADSHQEATELDTITVSSQQDEMNIKEKKVGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYIQRSRGHDRSYSLQPQSNYFTYDEKESRHANDLTKRKNVSFTYENYSITPFWDTLKLSYSQQKIRTRARTEDYCDGNEKCDSYKNPLGLQLKDGKIVDPAGNQITLKGTGFNTEIVDKDGKPFPTTSGTNNAAFSNNLQLSPTGFWLDCTIFDCTKPFTVYNYKQNKYEPREVMLSEEITIDGKLYKTAKEESGVRNYLILPNSKGYLPYDYKERDLDSNTKQINLDLTKTFSTFNIENELLYGAIYSRTEKKMVNKAGYDGRNPTWWADRILGKSTNCNYNGLKCSRHEPLTSFLIPVEATTKSLYFSDNIKLHNMLSVDLGYRYDDIKYQPEYIPGVTPKIADDMVKGIFIPLPKGEKIKIGNYETTKPLTPEQIRKNAEENIAYIAQEKRFKKHSYSLGATFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAIRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKFSAEITF
>NC_017027.1|WP_014390878.1|327455_327971_+|heme-utilization-protein-HutZ
MTTNHQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAIHNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEEWHSGVEALKARHGALMDELFRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>NC_017027.1|WP_014390887.1|341943_342924_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGVCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>NC_017027.1|WP_014390888.1|342904_346225_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEMAWQDAYSLQILTALSALLHDVGKSSVGFQAKLDKTKNAPRVADSYRHEWISARLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQQTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAHQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFTQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLVKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDDDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLVASLDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGQLDWHYNEVYGFW
>NC_017027.1|WP_014390889.1|346282_348139_+|response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYEDGRYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>NC_017027.1|WP_005725867.1|348279_348870_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>NC_017027.1|WP_005725868.1|348933_349737_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDDLQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>NC_017027.1|WP_005751243.1|349950_350667_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVVGTSARLRHLQNSLIEPRECGTHAIAYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>NC_017027.1|WP_005721326.1|350745_351210_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>NC_017027.1|WP_014390890.1|351257_352472_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGMIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>NC_017027.1|WP_014390891.1|352703_353090_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEVK
>NC_017027.1|WP_005721379.1|353159_353483_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

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Crispr_ID: NC_017027_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017027_2

1184436-1184524

Orphan

Consensus_repeat	Method
AAATGTGGTGCACATGACCACAAAGCAAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017027_2

>merge|NC_017027|2|1184436-1184524|CRISPRCasFinder
AAATGTGGTGCACATGACCACAAAGCAAAAGCGGCAGAAGGTAAATGCGGTGAAGGCAAATGTGGTGCACATGATCACAAAGCAAAAGC

>NC_017027|2|2|1184436-1184524|CRISPRCasFinder
AAATGTGGTGCACATGACCACAAAGCAAAAGC	GGCAGAAGGTAAATGCGGTGAAGGC
AAATGTGGTGCACATGATCACAAAGCAAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017027.1\|WP_014391307.1\|1187907_1189860_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NC_017027.1\|WP_014391306.1\|1187342_1187690_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_017027.1\|WP_005720999.1\|1177393_1177660_+\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NC_017027.1\|WP_005723609.1\|1178048_1178759_+\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NC_017027.1\|WP_014391303.1\|1175454_1177197_-\|protein-disulfide-reductase-DsbD	unknown	unknown	gnl\|CDD\|234717
NC_017027.1\|WP_005720998.1\|1177670_1177811_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179138
NC_017027.1\|WP_005723605.1\|1180445_1180928_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_017027.1\|WP_005720797.1\|1183784_1184234_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_017027.1\|WP_005720712.1\|1186369_1186570_-\|hypothetical-protein	unknown	unknown	unknown
NC_017027.1\|WP_005756030.1\|1184670_1185594_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NC_017027.1\|WP_005723457.1\|1190673_1191003_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_017027.1\|WP_014391304.1\|1178807_1180286_-\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
NC_017027.1\|WP_005751161.1\|1185583_1186303_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NC_017027.1\|WP_014391308.1\|1191231_1193838_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_017027.1\|WP_005723602.1\|1180979_1181189_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NC_017027.1\|WP_005720705.1\|1189869_1190472_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_017027.1\|WP_014391309.1\|1193939_1194968_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
NC_017027.1\|WP_005723597.1\|1182636_1183308_-\|response-regulator	unknown	unknown	gnl\|CDD\|182387
NC_017027.1\|WP_014391305.1\|1186570_1187122_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237128
NC_017027.1\|WP_005756037.1\|1181276_1182650_-\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388

Protein	Function_ID	Function_description	E-value
NC_017027.1\|WP_014391306.1\|1187342_1187690_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.85859e-21
NC_017027.1\|WP_005720999.1\|1177393_1177660_+\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.17773e-43
NC_017027.1\|WP_005723609.1\|1178048_1178759_+\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	0
NC_017027.1\|WP_014391303.1\|1175454_1177197_-\|protein-disulfide-reductase-DsbD	gnl\|CDD\|234717	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional.	0
NC_017027.1\|WP_005720998.1\|1177670_1177811_+\|50S-ribosomal-protein-L36	gnl\|CDD\|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	3.4582e-15
NC_017027.1\|WP_005723605.1\|1180445_1180928_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	5.62812e-86
NC_017027.1\|WP_005720797.1\|1183784_1184234_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.5127e-28
NC_017027.1\|WP_014391307.1\|1187907_1189860_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NC_017027.1\|WP_005756030.1\|1184670_1185594_+\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	3.5482e-154
NC_017027.1\|WP_005723457.1\|1190673_1191003_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	6.89652e-46
NC_017027.1\|WP_014391304.1\|1178807_1180286_-\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
NC_017027.1\|WP_005751161.1\|1185583_1186303_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	9.14171e-125
NC_017027.1\|WP_014391308.1\|1191231_1193838_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_017027.1\|WP_005723602.1\|1180979_1181189_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	2.47694e-22
NC_017027.1\|WP_005720705.1\|1189869_1190472_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.1701e-121
NC_017027.1\|WP_014391309.1\|1193939_1194968_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.36068e-114
NC_017027.1\|WP_005723597.1\|1182636_1183308_-\|response-regulator	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	2.90846e-105
NC_017027.1\|WP_014391305.1\|1186570_1187122_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237128	PRK12530, PRK12530, RNA polymerase sigma factor; Provisional.	4.07902e-111
NC_017027.1\|WP_005756037.1\|1181276_1182650_-\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	0

>NC_017027.1|WP_005720797.1|1183784_1184234_+|DoxX-family-protein
MYKTNSNIQWIGTGIGLLGLRLFLAWEFFESGKEKWKGENWFMEIQESFPFPFNVIPSDLNWTLAMGAELLLPFFLILGFFTRCSALSLTILTAVAWYSVHAGAGYNVCNNGYKMALIYIVTLLPLITQGAGIFSVDHLLQRKSPTLNQ
>NC_017027.1|WP_005723597.1|1182636_1183308_-|response-regulator
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGLDILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRYGQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYNWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA
>NC_017027.1|WP_005756037.1|1181276_1182650_-|two-component-system-sensor-histidine-kinase-QseC
MKWLKQTSLRVRLIFTLSLTALVIWLASTAVAWFQVRKEVNDVFDAQQILLAQRLASANLHNMLIARAPHDVNKQLKKVRHYDDDALAFAIFNHRGDLLLSDGNNGENFIFAPHNGFSVSAIREDDDRWRIFWLPVNQGKWIIAVGQEMDYREDLINQMVFGQMWIWFASLPFLLGILVWVISRELRPLKQVNAQLMQRRPDDTSLLPSENLPTEILPLIHNLNHFFERTATMLLRERRFTSDAAHELRSPLAALRIQTEVAQMAGDDALMREQALQNLTLGIDRASQLIERLLTLSRLDNLAELDEMEAIHWEPLIASLVSELYFSAQKRQMDLQFELIAAPPVQQGQPLLLSLMLRNLIDNALRYCPEGSTITIKLYADRIVIEDNGNGVNDADLAKLGQRFYRPAGQNEKGSGLGLSIVQRIATLHHYQFRLENVKDDKGYVKGFRSLILLNKI
>NC_017027.1|WP_005723602.1|1180979_1181189_-|TOBE-domain-containing-protein
MKISARNQFKGKVVALEKGAVNAVVSIDIGAGNVITSTISMAAVEELKLEVGKDAYAIIKATSVMVGVE
>NC_017027.1|WP_005723605.1|1180445_1180928_+|SsrA-binding-protein-SmpB
MTKKKVKVGTNTIALNKRARHDYFIEDEMEAGLELQGWEVKSMRAGKANISDSYIIFKQGEAYLFGATIQPLNVASTHIVCDPTRTRKLLLKQKELASLFGKANRDGYTIVALSLYWKGAWAKLKIGLAKGKKQHDKREDIKEREWKVTKDRIMKNARLG
>NC_017027.1|WP_014391304.1|1178807_1180286_-|4-hydroxy-3-polyprenylbenzoate-decarboxylase
MKYKDLRDFLTLLEQRGELKRIKQEIDPYLEMTEIADRTLRAGGPALLFENPKGFDIPVLCNLFGTPKRVAMGMGQEQVSALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTKVLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGLTITKGPLKKRQNLGIYRQQLVAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDPIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAMTTRCDPARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDEIWDSLAIFENEP
>NC_017027.1|WP_005723609.1|1178048_1178759_+|two-component-system-response-regulator-ArcA
MGTPQILIVEDEAITRNTLKSIFEAEGYEVFEAADGAQMHRILSNKVINLVIMDINLPGKNGLMLARELRETTNTALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLQRTMQENSKDSHHPIEQYRFNGWTLDLNSRTLINPEGEEYKLPRSEFRAMLHFCENPGKIQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPETPEIIATIHGEGYRFCGELE
>NC_017027.1|WP_005720998.1|1177670_1177811_+|50S-ribosomal-protein-L36
MQVLSSLKSAKTRHPGCKIVRRHGVVYVICKENPRFKARQGGKKKR
>NC_017027.1|WP_005720999.1|1177393_1177660_+|type-B-50S-ribosomal-protein-L31
MKKGIHPENYRTVLFYDSNAKQGFLIRSCARTTTTMKWEDGHEYPVFMCDTSSASHPYYTGKTRQIANEGRASDFVNRYGKFGTLKSK
>NC_017027.1|WP_014391303.1|1175454_1177197_-|protein-disulfide-reductase-DsbD
MVLLMKKIFFIFFLIWTSLSVNAGVFDKKNAFLKAEQAFVFTESQQNDRLSLNWDIASGYYLYKKSLEIKGENGQLFIPQLPLAEIHQDDFFGDVEIYRHQLTFSLPFTQLSATKQVEITYQGCTEGFCYPPETRVIALTSLERESGQISSAVLTEESVLSELPLAEQDRLAAKLIESKYAVFWFFLFGLGLAFTPCVLPMLPLLSAIVIGREQRPSTAKAFGLSVVYVQGMALTYTLLGLIVAAIGLPFQVALQSPYVLLTLSVIFVLLALSMFGLFTLQLPVSLQTKLTQYSQQQKSGVFGGVFVMGMIAGLVASPCTSAPLSSALLYVAQSGDLFTGAITLYLLALGMGLPLIFITVFGNNILPKSGNWMIQVKNAFGFVLLALPIFLISRVFPEIEMPLWFSLAFAFSLWLLYQFRNNKGVWVFTFILGVMGYLYYSYAMNRHTPAHQTTSLSQFERITSYAQLQQVLSKNPNSLAMLDLYADWCVACKEFETHTFSDVAVQKAFADVLLLQVDMTKNSEANRELMQKLHVIGLPTLIFFNQQGQEIEGSRITGFMQASPFVDWLQKMKSIQSISQ
>NC_017027.1|WP_005756030.1|1184670_1185594_+|DUF692-family-protein
MMLQGAGLGYRRDLAEDFLLLPDNSVVNFMEVAPENWIKMGGAARYKFDQAAERFPLAVHGLSLSLGGQAPLDKALLQGIKALMTQYQAVFFSEHLSYCECDGHLYDLLPMPFTEEAVKHVAQRIREVQDFLGMQISLENTSYYLHSPTSTMNEVEFLNAIAQEANCGIHLDVNNIYVNGVNHGLLNPYVFLDHVDVSRVNYIHIAGHDEEHGAANPISPSDEAFNKIKGEYRHLPQLLVDTHGEAVKGNVWDLLEYAYQRLPHIPPTLLERDFNFPPFAELYAEVEHIAQLQQKHAKLTVENRHAA
>NC_017027.1|WP_005751161.1|1185583_1186303_+|DUF2063-domain-containing-protein
MQPKSSNLKATQAALAKAVRLGHADPLNGYAPQRLAVYARLVRNNTFGFIDRCFVEAPNHLSATRWAETKERFIQEGKATSPYFQDIAGEFLTFCQTQTDFSADILALMDFEYTQLLAEVEKTNLTDPIAWDERTEMQLSPAAFLKSYDVDFLSSHFSQLEKAASHIIVWRNRHFQVKQQKLSELDFWLLTYLAEQPTSLSHLSQALADLIADHASLQPILAQAWTNWFEADVICPVTD
>NC_017027.1|WP_005720712.1|1186369_1186570_-|hypothetical-protein
MKYCFKVTKLISESHERPLSLVESVGVRLHRLMCLRCDNFGKNCESLSQMMKQFAQQHDKDESKPE
>NC_017027.1|WP_014391305.1|1186570_1187122_-|sigma-70-family-RNA-polymerase-sigma-factor
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFAILKNKIIDYLRVNHRFVVESELITDEDENSFFDGGRWRKGYAPSRLQENENTVYSEQFWVLFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSNLHVLLYRARLQLQHCLTTKMGER
>NC_017027.1|WP_014391306.1|1187342_1187690_-|preprotein-translocase-subunit-SecG
MYQTLLLGYAIIAIIIVFLILIQQGKGADAGASFGGGASGTIFGSVGSGNFLSKMTALLATAFFVMSIVIGNVNSHRNNVKQGKFDDLSATAEQIQQQQKIDAPAVETKNSDIPQ
>NC_017027.1|WP_014391307.1|1187907_1189860_-|DNA-topoisomerase-III
MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGADDYVTWCIGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLIPRKDVHKQLTIVEKLIHQADILINAGDPDREGQLLVDEVFSYANLSVDKLNQIQRCLISDLNPSAVEKAVNKLQSNRNFIPLATSALARARADWLYGINMTRAYTLRGRQAGYQGVLSVGRVQTPVLGLIVRRDLEIENFKPKDFFEVLAHIQAETPEKITALSVQEKADIPQFKALWQPSKACEDYQDEEGRVLSLGLVENVVKRIAQQPAEVVEYVDKREHESAPLPYSLSALQIDAAKRYGLSAQEVLDICQRLYETHRLITYPRSDCRYLPEEHFAERTKVFQAISRHISDYQPLPDILNPEQKNRCWNDKKVEAHHAIIPTAKNTPVNLNQREWQIYHLIARQYLMQFCPDAEYRKSKITLNIAGGTFIAQARNLQVAGWKQLLGKEDSDEQQEPLLPVVKKGQILFCEKGEIVSKKTQPPKPFTDATLLSAMTGIARFVQDKELKKILRETDGLGTEATRAGIIELLFKRGFLYKKGRNIHSTETGRILIQALPDVATQPDMTAHWESQLTSISQKEMSYQQFMSTLTNFLPELMRYVNFAALRQLSQVEKPQSFSKKMSAKSKKRPT
>NC_017027.1|WP_005720705.1|1189869_1190472_-|recombination-protein-RecR
MQTSPLLEHLIESLRCLPGVGPKSAQRMAYHLLQRNRNGGMELARALTEAMSKIGHCSHCRTFTEEEVCTICNNPRRQHSGLLCVVEQPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLHLLQKRLQEESFHEVILATNPTVEGDATANYIAELCMQQNIKVTRIAHGIPVGGELEMVDGTTLTHSFLGRRQLG
>NC_017027.1|WP_005723457.1|1190673_1191003_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGLGNLMKQAQQMQDRMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRVEIDPSLMEDDKDMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMALPPGFKMPF
>NC_017027.1|WP_014391308.1|1191231_1193838_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MSDFLQSYQQHVDERAALGIVPKPLDAEQTAQLIELLKNPPADKADFLLNLFETRIPAGVDEATYVKASFLAAVAKRDVQSPLISAEKAVQLLGTMQGGYNIEPLLHALDDETLAPIAVEALSTTLLMFDNFHDVAERAKKGNLFAKQVLTSWANADWFLSRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNTRDGIEPDDAGNVGPIKQLEQLKQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVVLGGKIAPIFFNTMEDAGSLPIEVDVSELNMGDVIDIYPYQGKICRHDTDEVLAEFSLKTNVLLDEVRAGGRIPLIIGRGLTHKARCELGLPESDIFAKPQCSTESQKGFTLAQKMVGRACGVDGIRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVVTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIEGLENLKVEQAFELSDASAERSAAACTIKLAKEPIIEYLNSNIVLLKYMIAEGYGDARTLERRIKGMEQWLADPQLMEADPDAEYAAVIEIDLAEIKEPILCAPNDPDDARLLSEVQGDKIDEVFIGSCMTNIGHFRAAGKLLAKFKGMIPTRLWIAPPTKMDAALLSEEGYYSIYGKSGARIEIPGCSLCMGNQARVADNATVVSTSTRNFPNRLGQGANVYLASAELAAVSAILGKLPTPEEYLTFAADLQQDKDDTYRYMNFDQINSYTKKADNVIFQSAV
>NC_017027.1|WP_014391309.1|1193939_1194968_+|ABC-transporter-substrate-binding-protein
MKLKSTVSQLCLALPFVLAGQALAEGKLTVYCSVQNTTCEKMVQTFSKKYDIETKFIRNSTGATLAKLIAEKNNPQADVWYGGTIEHHFQAGDLALLEAYRSPYQADIMPQFRALTEKRGDLTSIVYMLVLGFGINTEKFKQLGIDTYPKCWSDLLDPRLQGYVQMPDPQISGTTYTAIATLIELWGEEKAFEYLKKLNANVSEYVKSALVTTNLSRGESAVAVGFVHSYATEKENGAPVESIQPCEGDGYSLGGMSIVKNARNLENAKRFVDWALTKEAQELVWRETKVYQIPTNIHAEASPQSVDPKQLKLINYDFDRFGSSAEGKRLTDKWVKEVKMAK

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Crispr_ID: NC_017027_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017027_3

1613482-1614770

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTTAAC	PILER-CR

21 spacers

cas3

The CRISPR arrays of NC_017027_3

>merge|NC_017027|3|1613482-1614770|CRISPRCasFinder,CRT,PILER-CR
AATTGACACTGCCTATACGGCAGTTAACCAGCTCAAAAAGCCAAAACACCGCTCTTTGGTTTTCTAAGCTGCCTATACGGCAGTTAACCGCCCGCGACAAGTGGTTGCAGATCCAAGCGTTTTCTAAGCTGCCTATACGGCAGTTAACTCATTAACGATGTTGATGCTTATGATGGTGATTTTCTAAGCTGCCTATACGGCAGTTAACACGTTAAATTTTACGGCAGTCTTAGACAGTTTTTTCTAAGCTGCCTATACGGCAGTTAACGAAGATGTGGGCGGGTTTCACATTCGTGAGATTTTCTAAGCTGCCTATACGGCAGTTAACTTTAGTTAAGCCGCTCACTGAAGCTTTCGAGATTTCTAAGCTGCCTATACGGCAGTTAACAAATACGGCTCAATTGCACAAGTGCCACTTGCTTTCTAAGCTGCCTATACGGCAGTTAACGATTAACTTTAATGTACGCAGACAAGTGAGAATTTCTAAGCTGCCTATACGGCAGTTAACAAAAAATAATCTACAGACCATTCACTACGCTTTTTCTAAGCTGCCTATACGGCAGTTAACAGAATATTTAGTCGTTGGAAGACTTGCTGAGTTTTCTAAGCTGCCTATACGGCAGTTAACCCCGACTGTCGCGTTATTAATCTTGTTCGGTTTTTCTAAGCTGCCTATACGGCAGTTAACAGCTGATGGGAATTATTCCAACAAATGCGGCATTTCTAAGCTGCCTATACGGCAGTTAACTTAAACGGCATTTAAACACTATCAAAGGAGTATTTCTAAGCTGCCTATACGGCAGTTAACTTGAGGGTGGCAAACTCAAAAGAAAAACAGTGTTTCTAAGCTGCCTATACGGCAGTTAACAACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGCTTTCTAAGCTGCCTATACGGCAGTTAACCATCGCAATGGAAAAGATGCGTTGTGAAAAATTTTCTAAGCTGCCTATACGGCAGTTAACAAGATTTTCTAATATCAAATTCAGTAAGTTCTTTTCTAAGCTGCCTATACGGCAGTTAACGTTATTCCGCTGCCGCAGGTTTAGCAGACCTTTTTCTAAGCTGCCTATACGGCAGTTAACACATTGATTGGCTAGCAATAGAACAGGATTTTTTTCTAAGCTGCCTATACGGCAGTTAACAAGGTTTAACTTCAACCGTGGAACGATTAAAATTTCTAAGCTGCCTATACGGCAGTTAACCTCAGTAGTCTTTGACTATCAAAAATCGGAAGTTTCTAAGCTGCCTATACGGCAGTTAAC

>NC_017027|3|3|1613482-1614770|CRISPRCasFinder
AATTGACACTGCCTATACGGCAGTTAAC	CAGCTCAAAAAGCCAAAACACCGCTCTTTGGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGCCCGCGACAAGTGGTTGCAGATCCAAGCGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCATTAACGATGTTGATGCTTATGATGGTGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACGTTAAATTTTACGGCAGTCTTAGACAGTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAAGATGTGGGCGGGTTTCACATTCGTGAGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTAGTTAAGCCGCTCACTGAAGCTTTCGAGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAATACGGCTCAATTGCACAAGTGCCACTTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GATTAACTTTAATGTACGCAGACAAGTGAGAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAAATAATCTACAGACCATTCACTACGCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGAATATTTAGTCGTTGGAAGACTTGCTGAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CCCGACTGTCGCGTTATTAATCTTGTTCGGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGCTGATGGGAATTATTCCAACAAATGCGGCA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTAAACGGCATTTAAACACTATCAAAGGAGTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGGGTGGCAAACTCAAAAGAAAAACAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	AACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CATCGCAATGGAAAAGATGCGTTGTGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGATTTTCTAATATCAAATTCAGTAAGTTCT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTTATTCCGCTGCCGCAGGTTTAGCAGACCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACATTGATTGGCTAGCAATAGAACAGGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGGTTTAACTTCAACCGTGGAACGATTAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCAGTAGTCTTTGACTATCAAAAATCGGAAG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NC_017027|3|2|1613482-1614770|CRT
AATTGACACTGCCTATACGGCAGTTAAC	CAGCTCAAAAAGCCAAAACACCGCTCTTTGGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGCCCGCGACAAGTGGTTGCAGATCCAAGCGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCATTAACGATGTTGATGCTTATGATGGTGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACGTTAAATTTTACGGCAGTCTTAGACAGTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAAGATGTGGGCGGGTTTCACATTCGTGAGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTAGTTAAGCCGCTCACTGAAGCTTTCGAGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAATACGGCTCAATTGCACAAGTGCCACTTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GATTAACTTTAATGTACGCAGACAAGTGAGAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAAATAATCTACAGACCATTCACTACGCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGAATATTTAGTCGTTGGAAGACTTGCTGAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CCCGACTGTCGCGTTATTAATCTTGTTCGGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGCTGATGGGAATTATTCCAACAAATGCGGCA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTAAACGGCATTTAAACACTATCAAAGGAGTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGGGTGGCAAACTCAAAAGAAAAACAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	AACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CATCGCAATGGAAAAGATGCGTTGTGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGATTTTCTAATATCAAATTCAGTAAGTTCT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTTATTCCGCTGCCGCAGGTTTAGCAGACCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACATTGATTGGCTAGCAATAGAACAGGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGGTTTAACTTCAACCGTGGAACGATTAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCAGTAGTCTTTGACTATCAAAAATCGGAAG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NC_017027|3|2|1613542-1614770|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGCCCGCGACAAGTGGTTGCAGATCCAAGCGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCATTAACGATGTTGATGCTTATGATGGTGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACGTTAAATTTTACGGCAGTCTTAGACAGTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAAGATGTGGGCGGGTTTCACATTCGTGAGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTAGTTAAGCCGCTCACTGAAGCTTTCGAGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAATACGGCTCAATTGCACAAGTGCCACTTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GATTAACTTTAATGTACGCAGACAAGTGAGAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAAATAATCTACAGACCATTCACTACGCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGAATATTTAGTCGTTGGAAGACTTGCTGAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CCCGACTGTCGCGTTATTAATCTTGTTCGGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGCTGATGGGAATTATTCCAACAAATGCGGCA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTAAACGGCATTTAAACACTATCAAAGGAGTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGGGTGGCAAACTCAAAAGAAAAACAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	AACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CATCGCAATGGAAAAGATGCGTTGTGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGATTTTCTAATATCAAATTCAGTAAGTTCT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTTATTCCGCTGCCGCAGGTTTAGCAGACCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACATTGATTGGCTAGCAATAGAACAGGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAGGTTTAACTTCAACCGTGGAACGATTAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCAGTAGTCTTTGACTATCAAAAATCGGAAG
TTTCTAAGCTGCCTATACGGCAGTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017027.1\|WP_014391534.1\|1614917_1616246_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NC_017027.1\|WP_014391530.1\|1610945_1611353_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NC_017027.1\|WP_014391536.1\|1621808_1622378_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
NC_017027.1\|WP_005719208.1\|1622383_1622812_+\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NC_017027.1\|WP_005724902.1\|1604927_1605539_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
NC_017027.1\|WP_014391527.1\|1606688_1608131_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NC_017027.1\|WP_014391535.1\|1618098_1621005_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NC_017027.1\|WP_014391528.1\|1608156_1609176_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131470
NC_017027.1\|WP_014391541.1\|1626237_1628820_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_017027.1\|WP_041423133.1\|1612464_1613430_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NC_017027.1\|WP_005724855.1\|1621085_1621745_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NC_017027.1\|WP_005719267.1\|1601586_1603173_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NC_017027.1\|WP_014391529.1\|1609404_1610829_+\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NC_017027.1\|WP_014391537.1\|1622835_1624203_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NC_017027.1\|WP_005724904.1\|1603532_1604900_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NC_017027.1\|WP_014391538.1\|1624243_1624912_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NC_017027.1\|WP_005724867.1\|1617118_1617823_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742
NC_017027.1\|WP_014326415.1\|1616357_1617071_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NC_017027.1\|WP_014391526.1\|1605724_1606651_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NC_017027.1\|WP_014391531.1\|1611421_1612468_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835

Protein	Function_ID	Function_description	E-value
NC_017027.1\|WP_014391534.1\|1614917_1616246_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NC_017027.1\|WP_014391530.1\|1610945_1611353_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	3.52484e-43
NC_017027.1\|WP_014391536.1\|1621808_1622378_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	1.53195e-59
NC_017027.1\|WP_005719208.1\|1622383_1622812_+\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
NC_017027.1\|WP_005724902.1\|1604927_1605539_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	7.18065e-110
NC_017027.1\|WP_014391527.1\|1606688_1608131_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.66528e-176
NC_017027.1\|WP_014391535.1\|1618098_1621005_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NC_017027.1\|WP_014391528.1\|1608156_1609176_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NC_017027.1\|WP_014391541.1\|1626237_1628820_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_017027.1\|WP_041423133.1\|1612464_1613430_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NC_017027.1\|WP_005724855.1\|1621085_1621745_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
NC_017027.1\|WP_005719267.1\|1601586_1603173_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	2.44663e-166
NC_017027.1\|WP_014391529.1\|1609404_1610829_+\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NC_017027.1\|WP_014391537.1\|1622835_1624203_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NC_017027.1\|WP_005724904.1\|1603532_1604900_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NC_017027.1\|WP_014391538.1\|1624243_1624912_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	6.78927e-76
NC_017027.1\|WP_005724867.1\|1617118_1617823_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73
NC_017027.1\|WP_014326415.1\|1616357_1617071_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
NC_017027.1\|WP_014391526.1\|1605724_1606651_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
NC_017027.1\|WP_014391531.1\|1611421_1612468_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0

>NC_017027.1|WP_041423133.1|1612464_1613430_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLVKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHNAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYTISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFSQHAQTMPYVLFFHGTTRQDKFLPDRQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NC_017027.1|WP_014391531.1|1611421_1612468_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPLCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGTFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPVTQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQVLPETVRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEGGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NC_017027.1|WP_014391530.1|1610945_1611353_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNVGDSFPLRLFFDNGEIMHIEAKIIQY
>NC_017027.1|WP_014391529.1|1609404_1610829_+|PTS-sucrose-transporter-subunit-IIBC
MNFPQIAQHVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAALSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAMADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLAKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIAVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>NC_017027.1|WP_014391528.1|1608156_1609176_+|substrate-binding-domain-containing-protein
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIIACSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCEVIYRD
>NC_017027.1|WP_014391527.1|1606688_1608131_+|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFMTYDFHHFQVADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NC_017027.1|WP_014391526.1|1605724_1606651_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPERENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQRTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKSGATYYLQGKSQLVSSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKHANACGALATTAKGAMSALPNKQQLDAFLAE
>NC_017027.1|WP_005724902.1|1604927_1605539_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHYDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NC_017027.1|WP_005724904.1|1603532_1604900_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NC_017027.1|WP_005719267.1|1601586_1603173_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGAKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>NC_017027.1|WP_014391534.1|1614917_1616246_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPAIAE
>NC_017027.1|WP_014326415.1|1616357_1617071_+|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>NC_017027.1|WP_005724867.1|1617118_1617823_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>NC_017027.1|WP_014391535.1|1618098_1621005_+|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKGFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLACWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDGTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNAQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLKQATWRLDSLRVIVSNKE
>NC_017027.1|WP_005724855.1|1621085_1621745_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>NC_017027.1|WP_014391536.1|1621808_1622378_+|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKQGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNNHQALAKKDPRLGSRKKVPLIVEFVNKPEKGMTIPPMKVEEKVAKPDPMLELEQLENNECLNQLLDALEAGKTLSAEDQQFVDDCLDRIAQLMDELGISEDDDPEEDLLRTFEKIDINQFR
>NC_017027.1|WP_005719208.1|1622383_1622812_+|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>NC_017027.1|WP_014391537.1|1622835_1624203_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRAPLFKDRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALSPDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQQQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSKEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>NC_017027.1|WP_014391538.1|1624243_1624912_+|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDEVVEWVR
>NC_017027.1|WP_014391541.1|1626237_1628820_-|DNA-mismatch-repair-protein-MutS
MDNLDLHTPMMRQYLALKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTKRGQSAGQPIPMAGVPYHAVEGYLAKLVQLGESVAICEQVGDPVTSKGPVERQVVRIVTPGTVSDESLLPERQDNLIATVYQEKDRFGLAVLDITSGRFQISEPEDRASLQAELQRISPVELLYCEDFVDMALLEPFKGLRRRPIWEFELGTAIQLLNRQFHTKDLRGFGVEKAIWGLCAAGCLLQYAKDTQRTALPHIQSLTLLQHSEHIQLDAATRRNLELTQNLAGGSENTLASVLDKCVTPMGSRLLKRWMHQPIRQHKKLMVRQNRITALLQQDLVAAIQPYLQQIGDMERILARVALRSARPRDLTRLRTALEQIPYLRDILAQQTSSDLTVLLQPIGEFSAQLDLLQRAIIDNPPMLIRDGGVIAEGYNAELDEWRSLSDGATRYLEELEQRERESTGIDTLKIGFNAVHGYYIQISQGQAHKAPMHYVRRQTLKNAERYIIPELKTYEDKVLKAKGAALALEKQLYEQLFDELLPHLGALQLASLTLAELDVLTNLAERAETLNYVAPQFSDDIGVHIQQGRHPVVEQVLNAPFIANPVELHPQRHLLIITGPNMGGKSTYMRQTALITLMAYMGSFVPAESAVIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATANSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKLRSLTLFATHYFELTVLPEQLAGSANVHLDAIEHNDTIAFMHAVQEGAASKSYGLAVAALAGVPQSVIKLAKQKLAQLEKLSQQNADQRIQDLRQLNQTQGELALMEEDDSKTAVWEMLEKLDPDELSPKQALAYLYQLKKLV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_017027_3	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	NC_017027.1	81175-81206	1.0
NC_017027_3	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	NC_017027.1	1519175-1519206	1.0
NC_017027_3	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	NC_017027.1	2212297-2212328	1.0
NC_017027_3	3.6\|1613810\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613810-1613841	32	NC_017027.1	1513000-1513031	1.0
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NC_017027.1	84767-84798	1.0
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NC_017027.1	85657-85688	1.0
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NC_017027.1	1522767-1522798	1.0
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NC_017027.1	1523658-1523689	1.0
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NC_017027.1	2215889-2215920	1.0

1. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 81175-81206, mismatch: 0, identity: 1.0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

2. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 1519175-1519206, mismatch: 0, identity: 1.0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

3. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 2212297-2212328, mismatch: 0, identity: 1.0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

4. spacer 3.6|1613810|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 1513000-1513031, mismatch: 0, identity: 1.0

tttagttaagccgctcactgaagctttcgaga	CRISPR spacer
tttagttaagccgctcactgaagctttcgaga	Protospacer
********************************

5. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 84767-84798, mismatch: 0, identity: 1.0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

6. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 85657-85688, mismatch: 0, identity: 1.0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

7. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 1522767-1522798, mismatch: 0, identity: 1.0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

8. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 1523658-1523689, mismatch: 0, identity: 1.0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

9. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to position: 2215889-2215920, mismatch: 0, identity: 1.0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017027_3	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	MH238467	Pasteurella phage Pm86, complete genome	48108-48139	0	1.0
NC_017027_3	3.9\|1613990\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613990-1614021	32	MH238467	Pasteurella phage Pm86, complete genome	52472-52503	0	1.0
NC_017027_1	1.2\|341475\|31\|NC_017027\|CRISPRCasFinder	341475-341505	31	NC_005329	Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence	1233-1263	2	0.935
NC_017027_1	1.5\|341655\|31\|NC_017027\|CRISPRCasFinder	341655-341685	31	MH238467	Pasteurella phage Pm86, complete genome	53902-53932	2	0.935
NC_017027_1	1.8\|341475\|32\|NC_017027\|PILER-CR,CRT	341475-341506	32	NC_005329	Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence	1232-1263	2	0.938
NC_017027_1	1.11\|341655\|32\|NC_017027\|PILER-CR,CRT	341655-341686	32	MH238467	Pasteurella phage Pm86, complete genome	53901-53932	2	0.938
NC_017027_1	1.13\|341775\|31\|NC_017027\|CRT	341775-341805	31	MH238467	Pasteurella phage Pm86, complete genome	14545-14575	3	0.903
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_008193	Pasteurella phage F108, complete genome	6716-6748	3	0.909
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	DQ114220	Bacteriophage F108, complete genome	6716-6748	3	0.909
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_047854	Cronobacter phage ESSI-2, complete genome	21785-21817	3	0.909
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	KX774374	Salinivibrio phage SMHB1, complete genome	7876-7908	3	0.909
NC_017027_3	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	MN855729	Siphoviridae sp. isolate 467, complete genome	2668-2699	5	0.844
NC_017027_3	3.12\|1614170\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614170-1614201	32	NC_049453	Klebsiella phage ST13-OXA48phi12.1, complete genome	28589-28620	5	0.844
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_003315	Haemophilus phage HP2, complete genome	6747-6779	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	AY027935	Haemophilus influenzae phage HP2, complete genome	6747-6779	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	U24159	Bacteriophage HP1 strain HP1c1, complete genome	7087-7119	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_001697	Haemophilus phage HP1, complete genome	7087-7119	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP025141	Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence	33727-33759	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	79460-79492	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP021835	Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence	100465-100497	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP025144	Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence	33579-33611	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP025147	Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence	39031-39063	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NZ_CP018956	Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence	20401-20433	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	KC139521	Salmonella phage FSL SP-004, complete genome	26167-26199	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MT374857	Yersinia phage vB_YpM_46, complete genome	29358-29390	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MK907239	Escherichia phage vB_EcoM-12474V, complete genome	5255-5287	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	AF063097	Bacteriophage P2, complete genome	29209-29241	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	LR595885	Escherichia virus P2_4E6b genome assembly, chromosome: 1	27898-27930	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_049390	Escherichia virus P2_4A7b genome assembly, chromosome: 1	29072-29104	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_049386	Escherichia virus P2_2H1 genome assembly, chromosome: 1	27912-27944	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_001895	Enterobacteria phage P2, complete genome	29209-29241	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	AY135739	Bacteriophage WPhi, complete genome	27401-27433	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_049387	Escherichia virus P2_4B2 genome assembly, chromosome: 1	27821-27853	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MT374855	Yersinia phage vB_YpM_22, complete genome	1176-1208	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_028896	Escherichia phage pro147, complete genome	27750-27782	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	AY251033	Bacteriophage L-413C, complete genome	28015-28047	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MK907238	Escherichia phage vB_EcoM-12474IV, complete genome	5276-5308	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MK907237	Escherichia phage vB_EcoM-12474III, complete genome	10060-10092	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_004745	Yersinia phage L-413C, complete genome	28015-28047	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_049388	Escherichia virus P2_4C9 genome assembly, chromosome: 1	28422-28454	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_049385	Escherichia virus P2_2H4 genome assembly, chromosome: 1	27678-27710	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	KF322032	Enterobacteria phage fiAA91-ss, complete genome	29679-29711	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MK907236	Escherichia phage vB_EcoM-12474II, complete genome	5255-5287	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	NC_028943	Escherichia phage pro483, complete genome	4886-4918	6	0.818
NC_017027_3	3.15\|1614350\|33\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614350-1614382	33	MT374858	Yersinia phage vB_YpM_50, complete genome	1176-1208	6	0.818
NC_017027_1	1.2\|341475\|31\|NC_017027\|CRISPRCasFinder	341475-341505	31	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	17494-17524	7	0.774
NC_017027_1	1.3\|341535\|31\|NC_017027\|CRISPRCasFinder	341535-341565	31	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1333352-1333382	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_CP023028	Acinetobacter baumannii strain 10042 plasmid pAba10042b, complete sequence	33109-33139	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_CP023030	Acinetobacter baumannii strain 9102 plasmid pAba9102a, complete sequence	36592-36622	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_CP023033	Acinetobacter baumannii strain 7847 plasmid pAba7847b, complete sequence	25867-25897	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_CP015366	Acinetobacter baumannii strain 3207 plasmid pAba3207b, complete sequence	25867-25897	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_MK243454	Acinetobacter baumannii strain 09A16CRGN0014 plasmid pCRA914-67, complete sequence	24667-24697	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_MG954377	Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence	27403-27433	7	0.774
NC_017027_1	1.4\|341595\|31\|NC_017027\|CRISPRCasFinder	341595-341625	31	NZ_CP033245	Acinetobacter baumannii strain 7835 plasmid pAba7835b, complete sequence	25867-25897	7	0.774
NC_017027_3	3.12\|1614170\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614170-1614201	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	45292-45323	7	0.781
NC_017027_1	1.2\|341475\|31\|NC_017027\|CRISPRCasFinder	341475-341505	31	NZ_CP021153	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-1, complete sequence	37937-37967	8	0.742
NC_017027_1	1.2\|341475\|31\|NC_017027\|CRISPRCasFinder	341475-341505	31	NZ_CP035460	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence	41581-41611	8	0.742
NC_017027_1	1.8\|341475\|32\|NC_017027\|PILER-CR,CRT	341475-341506	32	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	17493-17524	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_CP023028	Acinetobacter baumannii strain 10042 plasmid pAba10042b, complete sequence	33108-33139	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_CP023030	Acinetobacter baumannii strain 9102 plasmid pAba9102a, complete sequence	36591-36622	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_CP023033	Acinetobacter baumannii strain 7847 plasmid pAba7847b, complete sequence	25867-25898	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_CP015366	Acinetobacter baumannii strain 3207 plasmid pAba3207b, complete sequence	25867-25898	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_MK243454	Acinetobacter baumannii strain 09A16CRGN0014 plasmid pCRA914-67, complete sequence	24666-24697	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_MG954377	Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence	27402-27433	8	0.75
NC_017027_1	1.10\|341595\|32\|NC_017027\|PILER-CR,CRT	341595-341626	32	NZ_CP033245	Acinetobacter baumannii strain 7835 plasmid pAba7835b, complete sequence	25867-25898	8	0.75
NC_017027_1	1.8\|341475\|32\|NC_017027\|PILER-CR,CRT	341475-341506	32	NZ_CP021153	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-1, complete sequence	37936-37967	9	0.719
NC_017027_1	1.8\|341475\|32\|NC_017027\|PILER-CR,CRT	341475-341506	32	NZ_CP035460	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence	41580-41611	9	0.719
NC_017027_3	3.2\|1613570\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613570-1613601	32	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	111534-111565	9	0.719
NC_017027_3	3.2\|1613570\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613570-1613601	32	NZ_CP038146	Streptomyces sp. S501 plasmid unnamed, complete sequence	248133-248164	9	0.719
NC_017027_3	3.3\|1613630\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613630-1613661	32	MK618657	Klebsiella phage Sanco, complete genome	28963-28994	9	0.719
NC_017027_3	3.3\|1613630\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613630-1613661	32	NC_048143	Klebsiella phage KpKT21phi1, complete genome	6914-6945	9	0.719
NC_017027_3	3.3\|1613630\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613630-1613661	32	NC_028774	Klebsiella phage Sushi, complete genome	21292-21323	9	0.719
NC_017027_3	3.11\|1614110\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614110-1614141	32	NZ_CP048640	Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence	66731-66762	9	0.719
NC_017027_3	3.17\|1614471\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614471-1614502	32	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	267509-267540	9	0.719
NC_017027_1	1.2\|341475\|31\|NC_017027\|CRISPRCasFinder	341475-341505	31	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	24062-24092	10	0.677
NC_017027_3	3.7\|1613870\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613870-1613901	32	NC_003240	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120beta, complete sequence	24536-24567	10	0.688
NC_017027_3	3.7\|1613870\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613870-1613901	32	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	53455-53486	10	0.688
NC_017027_3	3.7\|1613870\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613870-1613901	32	NZ_CP047244	Trichormus variabilis 0441 plasmid unnamed2, complete sequence	186062-186093	10	0.688
NC_017027_3	3.17\|1614471\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614471-1614502	32	MN693979	Marine virus AFVG_250M571, complete genome	46433-46464	10	0.688
NC_017027_3	3.17\|1614471\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614471-1614502	32	MN693199	Marine virus AFVG_25M271, complete genome	27142-27173	10	0.688
NC_017027_3	3.17\|1614471\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614471-1614502	32	MN694171	Marine virus AFVG_250M572, complete genome	7297-7328	10	0.688
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NZ_CP009919	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence	31215-31246	10	0.688
NC_017027_3	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	NZ_CP035096	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence	3105-3136	10	0.688
NC_017027_1	1.8\|341475\|32\|NC_017027\|PILER-CR,CRT	341475-341506	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	24062-24093	11	0.656
NC_017027_3	3.17\|1614471\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614471-1614502	32	NZ_CP041396	Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence	56751-56782	11	0.656

1. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 0, identity: 1.0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

2. spacer 3.9|1613990|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 0, identity: 1.0

aaaaaataatctacagaccattcactacgctt	CRISPR spacer
aaaaaataatctacagaccattcactacgctt	Protospacer
********************************

3. spacer 1.2|341475|31|NC_017027|CRISPRCasFinder matches to NC_005329 (Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence) position: , mismatch: 2, identity: 0.935

gtttaaagcgcctgatttttatcaatatcca	CRISPR spacer
atttaaagcccctgatttttatcaatatcca	Protospacer
.******** *********************

4. spacer 1.5|341655|31|NC_017027|CRISPRCasFinder matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 2, identity: 0.935

ttcatcgtggactgttcaaaagaagtcgaga	CRISPR spacer
ttcattgttgactgttcaaaagaagtcgaga	Protospacer
*****.** **********************

5. spacer 1.8|341475|32|NC_017027|PILER-CR,CRT matches to NC_005329 (Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence) position: , mismatch: 2, identity: 0.938

gtttaaagcgcctgatttttatcaatatccaa	CRISPR spacer
atttaaagcccctgatttttatcaatatccaa	Protospacer
.******** **********************

6. spacer 1.11|341655|32|NC_017027|PILER-CR,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 2, identity: 0.938

ttcatcgtggactgttcaaaagaagtcgagaa	CRISPR spacer
ttcattgttgactgttcaaaagaagtcgagaa	Protospacer
*****.** ***********************

7. spacer 1.13|341775|31|NC_017027|CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 3, identity: 0.903

actcataatcggaagagagcgagttcgaatc	CRISPR spacer
gctcataaccggaagatagcgagttcgaatc	Protospacer
.*******.******* **************

8. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 3, identity: 0.909

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcaagtgccagtgcggcgtgccgtcgtggtgt	Protospacer
*.************.*****************.

9. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 3, identity: 0.909

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcaagtgccagtgcggcgtgccgtcgtggtgt	Protospacer
*.************.*****************.

10. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_047854 (Cronobacter phage ESSI-2, complete genome) position: , mismatch: 3, identity: 0.909

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
aacatgtgccagtgtggcgtgccgtcatggtga	Protospacer
**** *********************.*****

11. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to KX774374 (Salinivibrio phage SMHB1, complete genome) position: , mismatch: 3, identity: 0.909

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcaagtgccagtgcggggtgccgtcgtggtgc	Protospacer
*.************.** ***************

12. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MN855729 (Siphoviridae sp. isolate 467, complete genome) position: , mismatch: 5, identity: 0.844

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
tcgttaaattttacggcaatcttaaacaatat	Protospacer
 *****************.*****.***.* *

13. spacer 3.12|1614170|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049453 (Klebsiella phage ST13-OXA48phi12.1, complete genome) position: , mismatch: 5, identity: 0.844

agctgatgggaattattccaacaaatgcggca	CRISPR spacer
agctgatggggattattccaacaaatactggc	Protospacer
**********.***************.* *

14. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcgcatgccagtgtggcgtgccgtctttgtgc	Protospacer
*.*. .******************** * ****

15. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcgcatgccagtgtggcgtgccgtctttgtgc	Protospacer
*.*. .******************** * ****

16. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcgcatgccagtgtggcgtgccgtctttgtgc	Protospacer
*.*. .******************** * ****

17. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
agcgcatgccagtgtggcgtgccgtctttgtgc	Protospacer
*.*. .******************** * ****

18. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025141 (Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

19. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

20. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021835 (Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

21. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025144 (Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

22. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025147 (Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

23. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018956 (Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

24. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

25. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MT374857 (Yersinia phage vB_YpM_46, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

26. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MK907239 (Escherichia phage vB_EcoM-12474V, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

27. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to AF063097 (Bacteriophage P2, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

28. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to LR595885 (Escherichia virus P2_4E6b genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

29. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049390 (Escherichia virus P2_4A7b genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

30. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049386 (Escherichia virus P2_2H1 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

31. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_001895 (Enterobacteria phage P2, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

32. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to AY135739 (Bacteriophage WPhi, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

33. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049387 (Escherichia virus P2_4B2 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

34. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MT374855 (Yersinia phage vB_YpM_22, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

35. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_028896 (Escherichia phage pro147, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

36. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to AY251033 (Bacteriophage L-413C, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

37. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MK907238 (Escherichia phage vB_EcoM-12474IV, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

38. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MK907237 (Escherichia phage vB_EcoM-12474III, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

39. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_004745 (Yersinia phage L-413C, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

40. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049388 (Escherichia virus P2_4C9 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

41. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_049385 (Escherichia virus P2_2H4 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

42. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to KF322032 (Enterobacteria phage fiAA91-ss, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

43. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MK907236 (Escherichia phage vB_EcoM-12474II, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

44. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_028943 (Escherichia phage pro483, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

45. spacer 3.15|1614350|33|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MT374858 (Yersinia phage vB_YpM_50, complete genome) position: , mismatch: 6, identity: 0.818

aacaagtgccagtgtggcgtgccgtcgtggtgc	CRISPR spacer
atcatatgccagtgcggcgttccgtcgtggtgt	Protospacer
* ** .********.***** ***********.

46. spacer 1.2|341475|31|NC_017027|CRISPRCasFinder matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 7, identity: 0.774

gtttaaagcgcctgatttttatcaatatcca	CRISPR spacer
atttaaagcgcctaatttttaccacaaagca	Protospacer
.************.*******.**  *  **

47. spacer 1.3|341535|31|NC_017027|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

taatggcgcaccagtgtcacaagagttcact	CRISPR spacer
ttatggcgcaccagtgtcgcaagatcttcat	Protospacer
* ****************.***** .*.  *

48. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_CP023028 (Acinetobacter baumannii strain 10042 plasmid pAba10042b, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

49. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_CP023030 (Acinetobacter baumannii strain 9102 plasmid pAba9102a, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

50. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_CP023033 (Acinetobacter baumannii strain 7847 plasmid pAba7847b, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

51. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_CP015366 (Acinetobacter baumannii strain 3207 plasmid pAba3207b, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

52. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_MK243454 (Acinetobacter baumannii strain 09A16CRGN0014 plasmid pCRA914-67, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

53. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_MG954377 (Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

54. spacer 1.4|341595|31|NC_017027|CRISPRCasFinder matches to NZ_CP033245 (Acinetobacter baumannii strain 7835 plasmid pAba7835b, complete sequence) position: , mismatch: 7, identity: 0.774

tttaatttttaaaaaagcggtca----cgccggaa	CRISPR spacer
tttaatttttaaaaaaacgggcattattgcc----	Protospacer
****************.*** **    .***

55. spacer 3.12|1614170|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

agctgatgggaattattccaacaaatgcggca	CRISPR spacer
atcaggtttgaattattccaccgaatgcggca	Protospacer
* * *.*  *********** *.*********

56. spacer 1.2|341475|31|NC_017027|CRISPRCasFinder matches to NZ_CP021153 (Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-1, complete sequence) position: , mismatch: 8, identity: 0.742

gtttaaagcgcctgatttttatcaatatcca	CRISPR spacer
tctcaaagctactgatttttatcaatatatc	Protospacer
 .*.*****  ***************** .

57. spacer 1.2|341475|31|NC_017027|CRISPRCasFinder matches to NZ_CP035460 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence) position: , mismatch: 8, identity: 0.742

gtttaaagcgcctgatttttatcaatatcca	CRISPR spacer
tctcaaagctactgatttttatcaatatatc	Protospacer
 .*.*****  ***************** .

58. spacer 1.8|341475|32|NC_017027|PILER-CR,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 8, identity: 0.75

gtttaaagcgcctgatttttatcaatatccaa	CRISPR spacer
atttaaagcgcctaatttttaccacaaagcac	Protospacer
.************.*******.**  *  **

59. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_CP023028 (Acinetobacter baumannii strain 10042 plasmid pAba10042b, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

60. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_CP023030 (Acinetobacter baumannii strain 9102 plasmid pAba9102a, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

61. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_CP023033 (Acinetobacter baumannii strain 7847 plasmid pAba7847b, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

62. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_CP015366 (Acinetobacter baumannii strain 3207 plasmid pAba3207b, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

63. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_MK243454 (Acinetobacter baumannii strain 09A16CRGN0014 plasmid pCRA914-67, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

64. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_MG954377 (Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

65. spacer 1.10|341595|32|NC_017027|PILER-CR,CRT matches to NZ_CP033245 (Acinetobacter baumannii strain 7835 plasmid pAba7835b, complete sequence) position: , mismatch: 8, identity: 0.75

tttaatttttaaaaaagcggtca----cgccggaag	CRISPR spacer
tttaatttttaaaaaaacgggcattattgccc----	Protospacer
****************.*** **    .***

66. spacer 1.8|341475|32|NC_017027|PILER-CR,CRT matches to NZ_CP021153 (Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaaagcgcctgatttttatcaatatccaa	CRISPR spacer
tctcaaagctactgatttttatcaatatatct	Protospacer
 .*.*****  ***************** .

67. spacer 1.8|341475|32|NC_017027|PILER-CR,CRT matches to NZ_CP035460 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaaagcgcctgatttttatcaatatccaa	CRISPR spacer
tctcaaagctactgatttttatcaatatatct	Protospacer
 .*.*****  ***************** .

68. spacer 3.2|1613570|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 9, identity: 0.719

cgcccgcgacaagtggttgcagatccaagcgt	CRISPR spacer
ctcccgcgacaagtggatgcagctcggcaccc	Protospacer
* ************** ***** ** . .* .

69. spacer 3.2|1613570|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038146 (Streptomyces sp. S501 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgcccgcgacaagtggttgcagatccaagcgt	CRISPR spacer
ctcccgcgacaagtggatgcagctcggcaccc	Protospacer
* ************** ***** ** . .* .

70. spacer 3.3|1613630|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MK618657 (Klebsiella phage Sanco, complete genome) position: , mismatch: 9, identity: 0.719

tcattaacgatgttgatgcttatgatggtgat	CRISPR spacer
acaaagacaatgttgttgcttatgatggtttg	Protospacer
 **  .**.****** *************

71. spacer 3.3|1613630|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_048143 (Klebsiella phage KpKT21phi1, complete genome) position: , mismatch: 9, identity: 0.719

tcattaacgatgttgatgcttatgatggtgat	CRISPR spacer
acaaagacaatgttgttgcttatgatggtttg	Protospacer
 **  .**.****** *************

72. spacer 3.3|1613630|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_028774 (Klebsiella phage Sushi, complete genome) position: , mismatch: 9, identity: 0.719

tcattaacgatgttgatgcttatgatggtgat	CRISPR spacer
acaaagacaatgttgttgcttatgatggtttg	Protospacer
 **  .**.****** *************

73. spacer 3.11|1614110|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048640 (Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence) position: , mismatch: 9, identity: 0.719

cccgactgtcgcgttattaatcttgttcggtt	CRISPR spacer
ttccattgtcgcgtcattaaacttgttcgtgg	Protospacer
..* *.********.***** ********

74. spacer 3.17|1614471|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 9, identity: 0.719

----aagattttctaatatcaaattcagtaagttct	CRISPR spacer
tatggaaactc----atatcaaattcagtaagatct	Protospacer
    .*.*.*.    ***************** ***

75. spacer 1.2|341475|31|NC_017027|CRISPRCasFinder matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 10, identity: 0.677

gtttaaagcgcctgatttttatcaatatcca	CRISPR spacer
accagaagggcctgattttcatcaatatttc	Protospacer
... .*** **********.********..

76. spacer 3.7|1613870|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_003240 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120beta, complete sequence) position: , mismatch: 10, identity: 0.688

aaatacggctcaattgcacaagtgccacttgc	CRISPR spacer
acgagtggcacaattccacaagtgccactcat	Protospacer
* . ..*** ***** *************...

77. spacer 3.7|1613870|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

aaatacggctcaattgcacaagtgccacttgc	CRISPR spacer
acgagtggcacaattccacaagtgccactcat	Protospacer
* . ..*** ***** *************...

78. spacer 3.7|1613870|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047244 (Trichormus variabilis 0441 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

aaatacggctcaattgcacaagtgccacttgc	CRISPR spacer
acgagtggcacaattccacaagtgccactcat	Protospacer
* . ..*** ***** *************...

79. spacer 3.17|1614471|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MN693979 (Marine virus AFVG_250M571, complete genome) position: , mismatch: 10, identity: 0.688

aagattttctaatatcaaattcagtaagttct	CRISPR spacer
ctttatttctaatatcagattcagcaagaaca	Protospacer
     ************.******.***  *

80. spacer 3.17|1614471|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MN693199 (Marine virus AFVG_25M271, complete genome) position: , mismatch: 10, identity: 0.688

aagattttctaatatcaaattcagtaagttct	CRISPR spacer
ctaggtagttaatatcaagttcagtaaattct	Protospacer
  .. *  .*********.********.****

81. spacer 3.17|1614471|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to MN694171 (Marine virus AFVG_250M572, complete genome) position: , mismatch: 10, identity: 0.688

aagattttctaatatcaaattcagtaagttct	CRISPR spacer
ctttatttctaatatcagattcagcaagaaca	Protospacer
     ************.******.***  *

82. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009919 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence) position: , mismatch: 10, identity: 0.688

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
tccagttgtctatgactatcaaaaatgaagca	Protospacer
..**** **** ************** ... .

83. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035096 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
tccagttgtctatgactatcaaaaatgaagca	Protospacer
..**** **** ************** ... .

84. spacer 1.8|341475|32|NC_017027|PILER-CR,CRT matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

gtttaaagcgcctgatttttatcaatatccaa	CRISPR spacer
accagaagggcctgattttcatcaatatttcc	Protospacer
... .*** **********.********..

85. spacer 3.17|1614471|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041396 (Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aagattttctaatatcaaattcagtaagttct	CRISPR spacer
cgcctttattaatatcaaattcagtaaaggaa	Protospacer
 .  *** .******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39829 : 49964

Mannheimia_phage(18.18%)

integrase

attL 33491:33506|attR 54923:54938

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
33491:33506	attL	NA	NA	NA	NA
WP_014390695.1\|39829_41002_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	2.0e-111	53.1
WP_014390696.1\|41377_41833_-	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.6e-27	47.1
WP_014390697.1\|41877_42231_-	hypothetical protein	NA	NA	NA	NA
WP_014390698.1\|42239_42728_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.8e-21	40.8
WP_014390699.1\|42768_43671_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	2.2e-65	47.5
WP_014390700.1\|43673_44057_-	hypothetical protein	NA	NA	NA	NA
WP_014390701.1\|44135_44447_-	hypothetical protein	X2CY11	Brucella_phage	7.3e-08	43.4
WP_014390702.1\|44446_44968_-	MazG-like family protein	Q708P2	Streptococcus_phage	2.6e-18	35.1
WP_014390703.1\|45034_45487_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	8.9e-39	54.6
WP_014390704.1\|45497_46199_-	ERF family protein	A0A0A7RVW0	Clostridium_phage	1.2e-18	42.6
WP_014390705.1\|46241_46892_-	ribonuclease H-like domain-containing protein	X2CYL5	Brucella_phage	1.5e-23	35.6
WP_014390707.1\|47064_47226_-	hypothetical protein	NA	NA	NA	NA
WP_014390708.1\|47239_47476_-	hypothetical protein	NA	NA	NA	NA
WP_014390709.1\|47447_47747_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|47813_48125_+	hypothetical protein	NA	NA	NA	NA
WP_014390711.1\|48186_48843_-	Bro-N domain-containing protein	Q7Y5V4	Haemophilus_phage	2.0e-39	67.5
WP_014390712.1\|49127_49964_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.3e-72	51.4
54923:54938	attR	NA	NA	NA	NA

DBSCAN-SWA_2

53550 : 81788

Mannheimia_phage(61.76%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014390718.1\|53550_54228_-	helix-turn-helix transcriptional regulator	A0A1B1P9J5	Acinetobacter_phage	3.2e-24	29.8
WP_014390719.1\|54351_54549_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014390720.1\|54598_55051_+	hypothetical protein	NA	NA	NA	NA
WP_014390721.1\|55102_55786_+	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	9.5e-77	67.9
WP_014390722.1\|55782_56136_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_014390723.1\|56137_57037_+	hypothetical protein	A0A0U4JX08	Bacillus_phage	2.1e-31	37.8
WP_014390724.1\|57036_57732_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.7e-33	34.4
WP_014390725.1\|57724_58255_+	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	3.2e-88	81.7
WP_014390726.1\|58263_58701_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	1.7e-58	73.1
WP_014390727.1\|58860_59076_+	hypothetical protein	NA	NA	NA	NA
WP_014390728.1\|59068_59671_+	recombination protein NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_014390729.1\|59670_60036_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	2.6e-09	28.2
WP_014390730.1\|60111_60687_+	hypothetical protein	NA	NA	NA	NA
WP_014390731.1\|60974_61592_+	KilA-N domain-containing protein	S5FM84	Shigella_phage	1.3e-13	42.6
WP_157808540.1\|61755_62031_+	hypothetical protein	NA	NA	NA	NA
WP_014390733.1\|62393_62690_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	8.4e-14	71.4
WP_041423051.1\|62686_63217_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	7.4e-45	50.9
WP_014667795.1\|63189_63513_+	DUF2570 family protein	NA	NA	NA	NA
WP_014390736.1\|63734_64169_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_016533497.1\|64197_64380_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_014390737.1\|64462_64960_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.4e-47	70.7
WP_014390738.1\|64943_66170_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	2.1e-191	77.0
WP_014390739.1\|66184_67630_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	1.0e-144	56.5
WP_014390740.1\|67583_68555_+	hypothetical protein	F1C5D8	Cronobacter_phage	1.6e-53	41.0
WP_014390741.1\|68569_69916_+	DUF2213 domain-containing protein	A0A0M3LQ78	Mannheimia_phage	2.6e-126	57.2
WP_014390742.1\|69915_70350_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	1.1e-54	75.0
WP_014390743.1\|70361_71360_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	1.6e-144	74.4
WP_014390744.1\|71370_71667_+	hypothetical protein	A0A0M3LR32	Mannheimia_phage	3.2e-13	73.9
WP_014390745.1\|71647_72016_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	4.7e-22	42.1
WP_014390746.1\|72018_72363_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.0e-31	57.9
WP_014390747.1\|72367_72739_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.3e-24	51.2
WP_014390748.1\|72735_73107_+	hypothetical protein	A0A0M3LTB0	Mannheimia_phage	1.4e-18	39.0
WP_014390749.1\|73118_73601_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.0e-44	62.0
WP_014390750.1\|73654_74326_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	2.6e-42	42.4
WP_014390751.1\|74402_74759_+	TM2 domain-containing protein	NA	NA	NA	NA
WP_014390752.1\|74834_75653_-	hypothetical protein	NA	NA	NA	NA
WP_014390754.1\|75991_76816_+	phage antirepressor N-terminal domain-containing protein	A0A0M3LR56	Mannheimia_phage	6.1e-46	70.5
WP_014390755.1\|76867_79312_+\|tail	phage tail length tape measure family protein	A0A0M3LS54	Mannheimia_phage	1.1e-156	48.5
WP_014390756.1\|79314_79644_+\|tail	phage tail protein	S5MW28	Escherichia_phage	3.2e-14	37.1
WP_014390758.1\|79772_80477_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.0e-81	63.9
WP_041423052.1\|80481_81225_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	3.7e-82	59.2
WP_014667799.1\|81167_81788_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4

DBSCAN-SWA_3

747629 : 752835

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014391088.1\|747629_748154_-	phage antirepressor N-terminal domain-containing protein	A0A0N7KZV8	Escherichia_phage	3.2e-24	47.0
WP_016534521.1\|748527_748743_-	hypothetical protein	NA	NA	NA	NA
WP_014391089.1\|748732_749026_-	hypothetical protein	Q7Y5V9	Haemophilus_phage	1.5e-18	52.7
WP_014391090.1\|749025_749730_-	hypothetical protein	NA	NA	NA	NA
WP_014391091.1\|749668_750070_-	replication protein	A0A0M3LQL8	Mannheimia_phage	2.9e-17	43.7
WP_014391093.1\|750300_750528_-	hypothetical protein	NA	NA	NA	NA
WP_014391094.1\|750596_750803_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	5.5e-12	51.6
WP_014391095.1\|750939_751575_+	hypothetical protein	G9L676	Escherichia_phage	2.1e-41	44.8
WP_014391096.1\|751689_752835_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.6e-18	27.7

DBSCAN-SWA_4

1141031 : 1150390

Sinorhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014391290.1\|1141031_1142306_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.4e-92	49.5
WP_005753554.1\|1142346_1142964_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_005724298.1\|1142963_1143851_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005724296.1\|1143920_1144868_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
WP_005756079.1\|1144943_1146497_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
WP_010906540.1\|1146731_1147523_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-17	29.7
WP_005724066.1\|1147531_1148317_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_014391292.1\|1148394_1149375_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
WP_005724063.1\|1149391_1150390_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4

DBSCAN-SWA_5

1482396 : 1524795

Mannheimia_phage(27.27%)

integrase,terminase,tail,portal,protease

attL 1483549:1483599|attR 1525541:1525591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014391440.1\|1482396_1483251_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.3e-30	39.3
1483549:1483599	attL	NA	NA	NA	NA
WP_014391441.1\|1483625_1484681_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	1.6e-62	37.9
WP_075271365.1\|1484584_1484887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014391442.1\|1485070_1485793_-	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	3.3e-35	52.5
WP_014391443.1\|1485803_1486025_-	hypothetical protein	NA	NA	NA	NA
WP_014391444.1\|1486283_1486640_-	hypothetical protein	NA	NA	NA	NA
WP_014391445.1\|1486648_1487146_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_014391447.1\|1487280_1487880_-	hypothetical protein	A0A218KC93	Bacillus_phage	4.6e-19	37.6
WP_014391448.1\|1487930_1488719_-	DUF2303 family protein	C5IHK3	Burkholderia_virus	3.2e-20	29.2
WP_014391449.1\|1488790_1489144_-	hypothetical protein	I6XKT1	Burkholderia_virus	2.2e-05	33.7
WP_014391450.1\|1489216_1489669_-	single-stranded DNA-binding protein	A0A2I7RNY1	Vibrio_phage	1.7e-37	62.1
WP_014391451.1\|1490315_1491269_-	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	1.2e-122	72.8
WP_014391452.1\|1491270_1491558_-	hypothetical protein	NA	NA	NA	NA
WP_041423119.1\|1491570_1491807_-	hypothetical protein	NA	NA	NA	NA
WP_014391453.1\|1491778_1492078_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|1492144_1492456_+	hypothetical protein	NA	NA	NA	NA
WP_014391454.1\|1492517_1493126_-	hypothetical protein	Q7Y5X0	Haemophilus_phage	3.8e-29	57.9
WP_014391455.1\|1493505_1494039_+	hypothetical protein	NA	NA	NA	NA
WP_014391456.1\|1494128_1494392_-	hypothetical protein	NA	NA	NA	NA
WP_014391457.1\|1494575_1494848_+	hypothetical protein	A0A0M3LS55	Mannheimia_phage	5.5e-36	78.9
WP_014391458.1\|1494840_1495029_-	hypothetical protein	NA	NA	NA	NA
WP_014391459.1\|1495325_1495520_+	hypothetical protein	NA	NA	NA	NA
WP_014391460.1\|1495500_1495671_-	hypothetical protein	NA	NA	NA	NA
WP_014391461.1\|1495683_1495914_-	hypothetical protein	NA	NA	NA	NA
WP_014391463.1\|1496913_1497309_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	2.2e-57	77.8
WP_014391464.1\|1497358_1498045_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	4.6e-71	58.4
WP_014391465.1\|1498172_1498382_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	9.5e-12	52.3
WP_014391466.1\|1498430_1498883_+	hypothetical protein	NA	NA	NA	NA
WP_014391467.1\|1498940_1499201_+	Rha family transcriptional regulator	D0UIL6	Aggregatibacter_phage	3.5e-16	65.3
WP_014391468.1\|1499197_1500010_+	replication protein	A0A0P0IKQ2	Acinetobacter_phage	1.0e-13	28.9
WP_014391469.1\|1500006_1500699_+	replication protein P	I6PBN0	Cronobacter_phage	1.6e-18	32.7
WP_014391470.1\|1500702_1501239_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_014391471.1\|1501228_1501687_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.4e-38	53.4
WP_014391472.1\|1501760_1501976_+	hypothetical protein	NA	NA	NA	NA
WP_014391473.1\|1501968_1502571_+	recombination protein NinG	H6WRY9	Salmonella_phage	4.8e-32	38.2
WP_014391474.1\|1502572_1503034_+	antitermination protein	NA	NA	NA	NA
WP_014391475.1\|1503360_1503621_+	hypothetical protein	NA	NA	NA	NA
WP_041423122.1\|1503617_1504148_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	4.7e-39	48.0
WP_079157976.1\|1504120_1504444_+	DUF2570 family protein	NA	NA	NA	NA
WP_014391478.1\|1504653_1505022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005720780.1\|1505057_1505318_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014391479.1\|1505607_1506081_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.7e-40	58.7
WP_014391480.1\|1506084_1508193_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	2.5e-269	66.8
WP_014391481.1\|1508189_1508411_+	hypothetical protein	NA	NA	NA	NA
WP_041423124.1\|1508407_1509946_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	6.7e-155	56.2
WP_014391483.1\|1509881_1511888_+\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	8.4e-190	53.1
WP_005719720.1\|1511959_1512286_+	DUF2190 family protein	A5LH31	Enterobacteria_phage	4.6e-13	38.9
WP_014391484.1\|1512278_1512572_+	hypothetical protein	NA	NA	NA	NA
WP_014391485.1\|1512571_1513123_+\|tail	phage tail protein	K7PKQ5	Enterobacteria_phage	2.1e-26	44.5
WP_014391486.1\|1513119_1513527_+\|tail	tail protein	NA	NA	NA	NA
WP_014391487.1\|1513523_1514033_+\|tail	tail fiber protein	K7P6G8	Enterobacteria_phage	3.1e-40	52.4
WP_014391488.1\|1514035_1514425_+\|tail	phage tail protein	NA	NA	NA	NA
WP_079157780.1\|1514487_1514748_+	hypothetical protein	NA	NA	NA	NA
WP_014391490.1\|1514734_1517128_+\|tail	phage tail length tape measure family protein	H6WRV7	Salmonella_phage	1.1e-23	29.5
WP_014391491.1\|1517127_1517475_+\|tail	phage tail protein	I6RSL7	Salmonella_phage	4.0e-15	39.6
WP_014391492.1\|1517763_1518477_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.1e-82	64.4
WP_041423126.1\|1518481_1519225_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	2.8e-82	59.2
WP_014667799.1\|1519167_1519788_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_014391494.1\|1519791_1524795_+	DUF1983 domain-containing protein	A0A0M3LQ61	Mannheimia_phage	3.6e-250	38.6
1525541:1525591	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2173000 : 2223171

Mannheimia_phage(50.98%)

terminase,tail,capsid,integrase

attL 2172910:2172962|attR 2228952:2229004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2172910:2172962	attL	NA	NA	NA	NA
WP_041423178.1\|2173000_2174089_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.3e-63	38.4
WP_015691046.1\|2174422_2174893_-	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	1.2e-22	44.4
WP_015691047.1\|2174896_2175193_-	hypothetical protein	NA	NA	NA	NA
WP_014391442.1\|2175248_2175971_-	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	3.3e-35	52.5
WP_014391443.1\|2175981_2176203_-	hypothetical protein	NA	NA	NA	NA
WP_015691048.1\|2176447_2177356_-	P63C domain-containing protein	A0A0M4S6X1	Salmonella_phage	2.5e-40	36.1
WP_015691049.1\|2177459_2177816_-	hypothetical protein	NA	NA	NA	NA
WP_015691050.1\|2177824_2178313_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	4.0e-21	41.2
WP_015691051.1\|2178353_2179256_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	2.2e-65	47.5
WP_015691052.1\|2179393_2179843_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	2.3e-39	55.3
WP_041423209.1\|2179842_2180502_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	5.2e-96	75.3
WP_014391451.1\|2180488_2181442_-	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	1.2e-122	72.8
WP_014391452.1\|2181443_2181731_-	hypothetical protein	NA	NA	NA	NA
WP_041423119.1\|2181743_2181980_-	hypothetical protein	NA	NA	NA	NA
WP_014391453.1\|2181951_2182251_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|2182317_2182629_+	hypothetical protein	NA	NA	NA	NA
WP_015691055.1\|2182737_2183562_-	NYN domain-containing protein	A0A0R6PGY5	Moraxella_phage	3.5e-33	38.7
WP_014390715.1\|2183900_2184128_-	hypothetical protein	NA	NA	NA	NA
WP_041423181.1\|2184631_2185156_-	DUF2730 family protein	A0A0M3LP99	Mannheimia_phage	1.3e-22	60.4
WP_014391463.1\|2185127_2185523_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	2.2e-57	77.8
WP_014391464.1\|2185572_2186259_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	4.6e-71	58.4
WP_014391465.1\|2186386_2186596_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	9.5e-12	52.3
WP_014391466.1\|2186644_2187097_+	hypothetical protein	NA	NA	NA	NA
WP_014391467.1\|2187154_2187415_+	Rha family transcriptional regulator	D0UIL6	Aggregatibacter_phage	3.5e-16	65.3
WP_015691057.1\|2187499_2188318_+	hypothetical protein	Q7Y5W1	Haemophilus_phage	5.6e-76	58.2
WP_015691058.1\|2188314_2189679_+	AAA family ATPase	A0A0M3LQC0	Mannheimia_phage	2.0e-126	51.7
WP_015691059.1\|2189675_2190044_+	site-specific DNA-methyltransferase (adenine-specific)	A0A0M3LPV8	Mannheimia_phage	5.3e-50	87.4
WP_015691060.1\|2190053_2190404_+	hypothetical protein	NA	NA	NA	NA
WP_015691061.1\|2190425_2190932_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	9.8e-79	82.7
WP_015691062.1\|2191016_2191667_+	metallophosphoesterase	K7P7V3	Enterobacteria_phage	1.4e-64	55.3
WP_015691063.1\|2191740_2191953_+	hypothetical protein	NA	NA	NA	NA
WP_015691064.1\|2192040_2192643_+	recombination protein NinG	H6WRY9	Salmonella_phage	1.4e-31	37.3
WP_015691065.1\|2192642_2193008_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	2.6e-09	28.2
WP_015691066.1\|2193216_2193432_-	hypothetical protein	NA	NA	NA	NA
WP_014390733.1\|2193809_2194106_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	8.4e-14	71.4
WP_041423051.1\|2194102_2194633_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	7.4e-45	50.9
WP_014667795.1\|2194605_2194929_+	DUF2570 family protein	NA	NA	NA	NA
WP_014390736.1\|2195150_2195585_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_016533497.1\|2195613_2195796_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_014390737.1\|2195878_2196376_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.4e-47	70.7
WP_015691067.1\|2196359_2197595_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LPI9	Mannheimia_phage	1.8e-190	75.6
WP_015691068.1\|2197604_2199008_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.2e-152	59.8
WP_015691069.1\|2198997_2200599_+\|capsid	minor capsid protein	A0A0M3LQ07	Mannheimia_phage	2.5e-152	52.1
WP_015691070.1\|2200601_2200820_+	hypothetical protein	NA	NA	NA	NA
WP_015691071.1\|2200794_2201229_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	D0UIJ3	Aggregatibacter_phage	3.1e-41	61.2
WP_015691072.1\|2201268_2201436_+	hypothetical protein	A0A1L2C977	Pseudomonas_phage	1.2e-06	51.0
WP_015691073.1\|2201564_2202335_+	hypothetical protein	A0A1V0DY60	Dinoroseobacter_phage	1.5e-25	36.2
WP_015691074.1\|2202352_2203510_+	hypothetical protein	G8C7P7	Escherichia_phage	8.3e-81	43.3
WP_015691075.1\|2203566_2203803_+	hypothetical protein	NA	NA	NA	NA
WP_015691076.1\|2203819_2204287_+	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	1.4e-34	55.7
WP_015691077.1\|2204288_2204663_+	hypothetical protein	NA	NA	NA	NA
WP_015691078.1\|2204664_2205066_+	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	2.1e-39	61.4
WP_015691079.1\|2205065_2205458_+	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	5.5e-29	46.2
WP_015691080.1\|2205470_2206487_+	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	4.0e-140	73.1
WP_005756587.1\|2206560_2206965_+	hypothetical protein	A0A0M3LPJ3	Mannheimia_phage	3.7e-36	56.7
WP_015691081.1\|2206973_2207303_+	hypothetical protein	A0A0M3LQT0	Mannheimia_phage	4.6e-29	62.5
WP_015691082.1\|2207310_2207637_+\|tail	phage tail protein	A0A1W6JNT2	Morganella_phage	1.2e-16	37.6
WP_015691083.1\|2207654_2210903_+	tape measure protein	A0A0M3LS69	Mannheimia_phage	3.8e-91	35.4
WP_015691084.1\|2210899_2211604_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.0e-81	62.8
WP_041423184.1\|2211606_2212347_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	4.3e-83	59.6
WP_014667799.1\|2212289_2212910_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_015691086.1\|2212913_2217026_+\|tail	phage tail protein	A0A0M3LQG1	Mannheimia_phage	8.7e-234	40.2
WP_014390761.1\|2217073_2217397_+	hypothetical protein	NA	NA	NA	NA
WP_080574119.1\|2217566_2218112_-	TIR domain-containing protein	NA	NA	NA	NA
WP_041423185.1\|2218131_2219817_-	AlwI family type II restriction endonuclease	A0A2K5B262	Erysipelothrix_phage	4.5e-19	25.3
WP_015691090.1\|2219830_2220682_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	M4QMR9	Micromonas_pusilla_virus	9.1e-53	39.9
WP_015691091.1\|2220685_2220892_-	helix-turn-helix domain-containing protein	A0A2I7SC34	Paenibacillus_phage	1.7e-05	40.7
WP_015691092.1\|2220978_2221386_-	DUF1870 family protein	H9C180	Pectobacterium_phage	1.6e-10	38.9
WP_015691093.1\|2221674_2223171_+	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	3.1e-56	50.3
2228952:2229004	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017027.1|WP_014391466.1|1498430_1498883_+|hypothetical-protein

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Acr_ID: NC_017027.1|WP_014391466.1|2186644_2187097_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017027.1|WP_014391466.1|1498430_1498883_+|hypothetical-protein

1498430_1498883_+

150 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.40350877192982454	0.9827586206896551

1482396-1524795

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NC_017027_3	Unclear	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	1519175-1519206
NC_017027_3	Unclear	3.6\|1613810\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613810-1613841	32	1513000-1513031
NC_017027_3	Unclear	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	1522767-1522798
NC_017027_3	Unclear	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	1523658-1523689

1. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 1519175-1519206, mismatch: 0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

2. spacer 3.6|1613810|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 1513000-1513031, mismatch: 0

tttagttaagccgctcactgaagctttcgaga	CRISPR spacer
tttagttaagccgctcactgaagctttcgaga	Protospacer
********************************

3. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 1522767-1522798, mismatch: 0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

4. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 1523658-1523689, mismatch: 0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

NC_017027.1|WP_014391466.1|2186644_2187097_+|hypothetical-protein

2186644_2187097_+

150 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.40350877192982454	0.9827586206896551

2173000-2223171

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017027_3	Unclear	3.4\|1613690\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1613690-1613721	32	2212297-2212328	0
NC_017027_3	Unclear	3.21\|1614711\|32\|NC_017027\|CRISPRCasFinder,CRT,PILER-CR	1614711-1614742	32	2215889-2215920	0

1. spacer 3.4|1613690|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 2212297-2212328, mismatch: 0

acgttaaattttacggcagtcttagacagttt	CRISPR spacer
acgttaaattttacggcagtcttagacagttt	Protospacer
********************************

2. spacer 3.21|1614711|32|NC_017027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017027 position: 2215889-2215920, mismatch: 0

ctcagtagtctttgactatcaaaaatcggaag	CRISPR spacer
ctcagtagtctttgactatcaaaaatcggaag	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017027

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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