CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_018067	Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.02, complete sequence	0 crisprs	NA	0	0
NC_018066	Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.01, complete sequence	0 crisprs	NA	0	0
NC_018068	Desulfosporosinus acidiphilus SJ4, complete sequence	3 crisprs	csa3,DEDDh,WYL,DinG,RT,cas3,cas5,cas8c,cas7,cas1,cas2,PrimPol,cas3HD	4	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018068_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018068_1

1538047-1540340

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CRT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	PILER-CR

34 spacers

cas2,cas1,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_018068_1

>merge|NC_018068|1|1538047-1540340|CRISPRCasFinder,CRT,PILER-CR
GTCGCTCCCTACGTGGGAGCGTGGATTGAAATTTTCCAAGCCAGATCCATGTGCCATGCTTTAAGGCGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTAATAATGTACAGAAGTTTTCGGCTGAGATTTTAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTATTCCAAGAATCAAAAATGAATTTACCACCACACGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAAATGATCAATACACTATAACAGCAGACACCGACACAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTATAGCACAGGCCAGAGGATTCTCAAGAGGTTTTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAATAACGCCTTGTTCATTCCGATACTCATCAAACCAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAGATTTTAGATCGAACTCAATGTCATTGATGGACTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATCTTACACCATTTATCTCTTCTTCGGCAAGAGGGTCGCTCCCTACGTGGGAGCGTGGATTGAAATGTGTTTCCAGATTACTTTTATTGCATCTTCGAATGCGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATAAGCATGAGAACACCAACATTCGAGTTGATTAAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATAAGCATGAGAACACCAACATTCGAGTTGATTAAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTTTTTGATTCTAGACCAAATGAGCTCAAGGCTATGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTGGCTGCTGAAGGCCGTAGTTAGAAGTCGTTTTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATCTAATTGGTGCGTCTGTACGAGTAATCACAGCGGCAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTCTCAGAACACTCTCCATGCGCTCTGATTGCTTGTTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATCTTTTGCCGCCAATACGACCTATTTCCTAACTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTCAAGGAAAACGAACGACGGCAACAACTCCTGGGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATCACGCACAATCTACACGGAACCGTCCCAGGACAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTCAAGGAAAACGAACGACGGCAACAACTCCTGGGTCGCTCCCTACGTGGGAGCGTGGATTGAAATCTCACGCAGGGCAAGGTCTAAGTCGTGGGCAAAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATCCATTACCCCGCCTGGAGGTATCGGCACACCGGTAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATACTGCAAGCAACTTGCTCGATGCTCTATCTTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATACTGCAAGCAACTTGCTCGATGCTCTATCTTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAAAGTAAAAATGAATCAAACGCCTCTCCTCCCTACGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAGTTGATTGCCCAAATTATGAACCATTTGATAAACGTCGCTCCCTACGTGGGAGCGTGGATTGAAATATAATGTTGATCAAATTAGTGAATATCAATATCGTCGCTCCCTACGTGGGAGCGTGGATTGAAATGACATGGAATCCTTCATCAAATCGCTCCTGGCAACGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTTATCCAAAACTTGCGGTGTTACAATCGCGCTGAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATCTTTTCTTCCTCGATAAACCGTTTCATTTGCTGTGGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAGAAACAATCTGGTCAAACGTTTTATACACCGACACGTCGCTCCCTACGTGGGAGCGTGGATTGAAATAAATTTGGAGAGGAGGCAGGACTTGAACCTGCCAAGTCGCTCCCTACGTGGGAGCGTGGATTGAAATTTTAATGTCAACAGCCCCTTCGGATTTGTCGTTCTGTCGCTCCCTACGTGGGAGCGTGGATTGAAATCAGTTACCAAACAGCAACCGGCCTTTTTCCACTGAAGTCGCTCCCTACGTGGGAGCGTGGATGAAATACACCGAAAGGCATAGTTGCATTTGGTTTCATCGTCACTCCTATGTGGGAGCGTGGATTGAAAT

>NC_018068|1|1|1538047-1540340|CRISPRCasFinder
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTCCAAGCCAGATCCATGTGCCATGCTTTAAGGC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TAATAATGTACAGAAGTTTTCGGCTGAGATTTTA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATTCCAAGAATCAAAAATGAATTTACCACCACAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAATGATCAATACACTATAACAGCAGACACCGACACA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATAGCACAGGCCAGAGGATTCTCAAGAGGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AATAACGCCTTGTTCATTCCGATACTCATCAAACCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGATTTTAGATCGAACTCAATGTCATTGATGGACT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCTTACACCATTTATCTCTTCTTCGGCAAGAGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	GTGTTTCCAGATTACTTTTATTGCATCTTCGAATGC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTTTGATTCTAGACCAAATGAGCTCAAGGCTAT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TGGCTGCTGAAGGCCGTAGTTAGAAGTCGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTAATTGGTGCGTCTGTACGAGTAATCACAGCGGCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCTCAGAACACTCTCCATGCGCTCTGATTGCTTGTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCTTTTGCCGCCAATACGACCTATTTCCTAACT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCAAGGAAAACGAACGACGGCAACAACTCCTGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCACGCACAATCTACACGGAACCGTCCCAGGACA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCAAGGAAAACGAACGACGGCAACAACTCCTGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTCACGCAGGGCAAGGTCTAAGTCGTGGGCAAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CCATTACCCCGCCTGGAGGTATCGGCACACCGGTA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATACTGCAAGCAACTTGCTCGATGCTCTATCTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATACTGCAAGCAACTTGCTCGATGCTCTATCTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAAGTAAAAATGAATCAAACGCCTCTCCTCCCTAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGTTGATTGCCCAAATTATGAACCATTTGATAAAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAATGTTGATCAAATTAGTGAATATCAATATC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	GACATGGAATCCTTCATCAAATCGCTCCTGGCAAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTATCCAAAACTTGCGGTGTTACAATCGCGCTGA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTTTTCTTCCTCGATAAACCGTTTCATTTGCTGTG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGAAACAATCTGGTCAAACGTTTTATACACCGACAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAATTTGGAGAGGAGGCAGGACTTGAACCTGCCAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTAATGTCAACAGCCCCTTCGGATTTGTCGTTCT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CAGTTACCAAACAGCAACCGGCCTTTTTCCACTGAA
GTCGCTCCCTACGTGGGAGCGTGGATGAAATA	CACCGAAAGGCATAGTTGCATTTGGTTTCAT
CGTCACTCCTATGTGGGAGCGTGGATTGAAAT

>NC_018068|1|1|1538047-1540340|CRT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTCCAAGCCAGATCCATGTGCCATGCTTTAAGGC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TAATAATGTACAGAAGTTTTCGGCTGAGATTTTA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATTCCAAGAATCAAAAATGAATTTACCACCACAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAATGATCAATACACTATAACAGCAGACACCGACACA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATAGCACAGGCCAGAGGATTCTCAAGAGGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AATAACGCCTTGTTCATTCCGATACTCATCAAACCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGATTTTAGATCGAACTCAATGTCATTGATGGACT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCTTACACCATTTATCTCTTCTTCGGCAAGAGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	GTGTTTCCAGATTACTTTTATTGCATCTTCGAATGC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTTTGATTCTAGACCAAATGAGCTCAAGGCTAT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TGGCTGCTGAAGGCCGTAGTTAGAAGTCGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTAATTGGTGCGTCTGTACGAGTAATCACAGCGGCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCTCAGAACACTCTCCATGCGCTCTGATTGCTTGTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCTTTTGCCGCCAATACGACCTATTTCCTAACT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCAAGGAAAACGAACGACGGCAACAACTCCTGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCACGCACAATCTACACGGAACCGTCCCAGGACA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCAAGGAAAACGAACGACGGCAACAACTCCTGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTCACGCAGGGCAAGGTCTAAGTCGTGGGCAAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CCATTACCCCGCCTGGAGGTATCGGCACACCGGTA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATACTGCAAGCAACTTGCTCGATGCTCTATCTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATACTGCAAGCAACTTGCTCGATGCTCTATCTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAAGTAAAAATGAATCAAACGCCTCTCCTCCCTAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGTTGATTGCCCAAATTATGAACCATTTGATAAAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAATGTTGATCAAATTAGTGAATATCAATATC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	GACATGGAATCCTTCATCAAATCGCTCCTGGCAAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTATCCAAAACTTGCGGTGTTACAATCGCGCTGA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTTTTCTTCCTCGATAAACCGTTTCATTTGCTGTG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGAAACAATCTGGTCAAACGTTTTATACACCGACAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAATTTGGAGAGGAGGCAGGACTTGAACCTGCCAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTAATGTCAACAGCCCCTTCGGATTTGTCGTTCT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CAGTTACCAAACAGCAACCGGCCTTTTTCCACTGAA
GTCGCTCCCTACGTGGGAGCGTGGATGAAATA	CACCGAAAGGCATAGTTGCATTTGGTTTCAT
CGTCACTCCTATGTGGGAGCGTGGATTGAAAT

>NC_018068|1|1|1538114-1539083|PILER-CR
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TAATAATGTACAGAAGTTTTCGGCTGAGATTTTA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATTCCAAGAATCAAAAATGAATTTACCACCACAC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AAATGATCAATACACTATAACAGCAGACACCGACACA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TATAGCACAGGCCAGAGGATTCTCAAGAGGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AATAACGCCTTGTTCATTCCGATACTCATCAAACCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	AGATTTTAGATCGAACTCAATGTCATTGATGGACT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATCTTACACCATTTATCTCTTCTTCGGCAAGAGG
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	GTGTTTCCAGATTACTTTTATTGCATCTTCGAATGC
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	ATAAGCATGAGAACACCAACATTCGAGTTGATTAA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TTTTTGATTCTAGACCAAATGAGCTCAAGGCTAT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TGGCTGCTGAAGGCCGTAGTTAGAAGTCGTTTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	CTAATTGGTGCGTCTGTACGAGTAATCACAGCGGCA
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT	TCTCAGAACACTCTCCATGCGCTCTGATTGCTTGTT
GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_018068.1\|WP_014826512.1\|1550344_1550881_+\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
NC_018068.1\|WP_014826508.1\|1547521_1548058_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_018068.1\|WP_014826496.1\|1532146_1532890_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_018068.1\|WP_014826502.1\|1541802_1542225_+\|Mn-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179669
NC_018068.1\|WP_041275997.1\|1537586_1537877_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_018068.1\|WP_014826497.1\|1532886_1534986_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_018068.1\|WP_014826494.1\|1528604_1528826_+\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_041275996.1\|1527775_1528585_+\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_014826507.1\|1547034_1547412_-\|TIGR03987-family-protein	unknown	unknown	gnl\|CDD\|274903
NC_018068.1\|WP_014826492.1\|1527151_1527619_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_018068.1\|WP_014826509.1\|1548727_1548889_-\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_014826498.1\|1534988_1535843_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_018068.1\|WP_014826511.1\|1549778_1549931_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|197609
NC_018068.1\|WP_083845558.1\|1543150_1544374_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225148
NC_018068.1\|WP_014826505.1\|1544429_1545680_+\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|334596
NC_018068.1\|WP_014826499.1\|1536544_1537576_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_018068.1\|WP_014826506.1\|1546035_1546668_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|376405
NC_018068.1\|WP_014826510.1\|1549248_1549587_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NC_018068.1\|WP_014826491.1\|1526308_1527016_+\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NC_018068.1\|WP_014826495.1\|1529694_1532127_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_018068.1\|WP_014826508.1\|1547521_1548058_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.6485e-13
NC_018068.1\|WP_014826496.1\|1532146_1532890_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.48964e-85
NC_018068.1\|WP_014826502.1\|1541802_1542225_+\|Mn-dependent-transcriptional-regulator	gnl\|CDD\|179669	PRK03902, PRK03902, transcriptional regulator MntR.	1.16127e-32
NC_018068.1\|WP_041275997.1\|1537586_1537877_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.23592e-31
NC_018068.1\|WP_014826497.1\|1532886_1534986_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.69379e-133
NC_018068.1\|WP_014826507.1\|1547034_1547412_-\|TIGR03987-family-protein	gnl\|CDD\|274903	TIGR03987, TIGR03987_family_protein, TIGR03987 family protein. Conserved hypothetical protein.	9.62504e-47
NC_018068.1\|WP_014826492.1\|1527151_1527619_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.99156e-14
NC_018068.1\|WP_014826512.1\|1550344_1550881_+\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	3.44975e-140
NC_018068.1\|WP_014826498.1\|1534988_1535843_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	7.09963e-112
NC_018068.1\|WP_014826511.1\|1549778_1549931_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|197609	smart00257, LysM, Lysin motif.	3.47336e-11
NC_018068.1\|WP_083845558.1\|1543150_1544374_+\|CBS-domain-containing-protein	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.9637e-63
NC_018068.1\|WP_014826499.1\|1536544_1537576_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_018068.1\|WP_014826505.1\|1544429_1545680_+\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	5.47826e-100
NC_018068.1\|WP_014826506.1\|1546035_1546668_+\|nitroreductase-family-protein	gnl\|CDD\|376405	pfam00881, Nitroreductase, Nitroreductase family. The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	2.24371e-23
NC_018068.1\|WP_014826510.1\|1549248_1549587_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	2.69527e-13
NC_018068.1\|WP_014826491.1\|1526308_1527016_+\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.71146e-06
NC_018068.1\|WP_014826495.1\|1529694_1532127_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.11677e-53

>NC_018068.1|WP_041275997.1|1537586_1537877_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDMAKFREVQHKLEKIIDTEKDSLRFYLLGNNYKNKVEHIGVKASFDVEDTLII
>NC_018068.1|WP_014826499.1|1536544_1537576_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSPNTYLSLDGENIVILKDEAEALRVPLHNLEGIIAFGYTGASPALMGACAKRNIALSFMKPSGKFLGRVVGEVKGNVTLRKTQYRLSEDEAESHKIAQSFILGKIYNARWVVERATRDHGARLDVDKLKGVCQTLANALKLVEKSQDLEQLRGFEGEAAAQYFRVLDDLILQQKDDFYFNSRNKRPPLDNVNAILSFVYTLLAHEAAVALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVYADRFVISLINKKVVNGAGFTRMENGAIIMDDDTRKAVLKAWQSRKQEEIRHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_018068.1|WP_014826498.1|1534988_1535843_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSILQNKIDYTAILSVTRANINGDPLNGNRPRGDYEGYGIFSDVAIKRKLRNRLQDLGECIFVQSDDRSDDGHKSLKDRADGYAEFKAEMSKGKKADKDKCMQIACRKWFDVRAFGQVFAFKGDEVSIGVRGPVSIQQAISVSPIDIVDMQITKSVNSEAGKSGKSSDTMGMKHYVNFGLYVIRGSINCQLAEKTGFTDEDAKKLKEALCTLFENDASSARPDGSCEVCRVYWWEHAEKTPKETSAMIQRALHITPKKDVPDSFGAYDIVLDRTECVPEIINLV
>NC_018068.1|WP_014826497.1|1532886_1534986_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWVSSLCALYDANAYRAGEVERWKGKDLVLLPIGYDTMEAQVEIHIDQNGNFIRARTLEKDEAETLVPYPDSRASGIKALPLFDGLSYIAGDLLETVTFYFSGAKNEKDKKKKKARLRESFPLYIAGLKAWCESPFSHPKVAAIYHYVGKQTVAKNLIDSQVLVADENSIVSDKIKIQNASVEKAFVRFRVFTNDNNSPDSILSDPDNAHDSAVWLDKTVQRSFIAYYSSTLHKKDLCYMTGEHMPIAKTNPVKIRGKWDTKAKLISANDESNFSYRGRFNTKEKKTGYNEALSIGYNTSQKAHNALKWIIRRQGFSRDGVCLVAWENALRDLPNFHDSAASILAKVSDDGEADEAEFEEEALFEEDEADVPVTNYVSAAKFNAALDGYASKLSDISNMVVLALDSATPGRLAITYYKELKSSRYLKNLRTWHESCCWKHEYIRDKELKVYEGMASIPEIALAIYGTEQGEDKSNPKIKLSKNSDNKSPMLVSAFERLRPCIIEGAAIPRDMVRAAVLKASNPLAYEAKFNYRKVLHIACSMVKRLYWEKKQRNEREGVIFKMELDRSNRDRSYLYGRLLAVAERVERVTYEKGETRITNAERYMQAFSHAPFRTWTMIWSNLQPYMRQLKPSGREFYKNLVGEITEQFKYEERISGDPLDGKYLIGYDCQRSELKRKPNGQSSSEEENKKENNEGEE
>NC_018068.1|WP_014826496.1|1532146_1532890_+|type-I-C-CRISPR-associated-protein-Cas5
MEVKRNTVEFMVSGDRALFSDPVTRVGGEKTSYYVPTYESLKGILTSVYWKPTIIWIIDAVRVMNMIQTLSEGIRTKNYNGGNDLSIYTYLKDVRYQVRAHFIWNENRPELAADRNENKHHNIARRMIERGGRRDIFLGTRECQGMVEPCVFGEGSGTYDPVDELNFGYMFHGFTYADEALRDAEKGHMSVRFHHVVMKKGVIEFPNPEEIPDKDRRILHKMPVKPFGEAIGNFSRLGEFAAEEVNQ
>NC_018068.1|WP_014826495.1|1529694_1532127_+|CRISPR-associated-helicase/endonuclease-Cas3
MHSKRFIAHIRKVDKREQYVDEHNDHVADLAAAVAHQYGVAKMAKLAGRHHDDGKNTPEFAAYIQAAAEGKRVVRGSVIHSTHGAILVNELVSSKDLYSKLTGEIIRTVIMSHHGLRDCLTLDGDAVFAEAAEKVSDSYEGIKDVIYQHYGADFINNEFIGACRDARSIAEKIRFLQDKSEFLGSQHFYLSMFTRLLTSIVIDADRTDTACFEDNTSLPQIKTPSERKEMWENYLKYYESRLEELQKEKKPSSLDPYRAEISRSCAEFDAGEGGIFRLVVPCGAGKTLAALRYALHTARRYEKQRILYIAPFNSILEQNASEISKFIGNANAVLEHHSNIIFDSDESEDEKRYQSLIENWAQSPVVATTAVQFLNTLFAGKTSCLRRMQALGNSVIILDEIQALPIKVLKLFNAAMNSLASFCKTSVVLCSATQPLLDRLDNYRILQPQSIIENEEKYSESFRRVQITDCMTEQGFSMEETAGFIVMQLDSAKSVLAIVNTKACARKIFKHIRDMVGKETQYRVFHLSTNMCPAHRSNVLQQMRKLLAQNDSNEKIICISTSLIEAGVDVSFERVVRSLTGLDSIVQAAGRCNRNYETACGNVSIINIRDEHAGGLGYLKKAQEATRELLYSMKRSPEHYPGGALSKAAMEEYYARYFKPLLKEMAYPLKFDPEYTMIDLLTNNPSGSKQFKANYAHQKPPLLRQAFSEAGKEFSVIDDDGKLDVCIEYDDDAGKWMQKLRSAATFQEKRLALRHLQPYTVQLRENDWLRKQRSALMPEDVGILVLPSGYYDREYGVDETLNILMEPLII
>NC_018068.1|WP_014826494.1|1528604_1528826_+|hypothetical-protein
MHNIKIYELDKQWHQQDAGANGWKYFREEKELVDSRTEMIYRKGNFSAIVEQTRGNSLYSLTMRWEQGASTNP
>NC_018068.1|WP_041275996.1|1527775_1528585_+|hypothetical-protein
MKVCYIYYFIEPIKEQYHDDGSTAFLEIDIPGTEYHYKASLLGTEDVPNMLRISISYVNEDKIPEISLNAIQSIKEHMFSTLRISYDPSLQFSKISLWNFIDKGNPPGLSVKLQEKYNSVPVNREIIKNNFTSTWENRYLIKLLTDGLNEDLPLYYRYLSFYRILEDSYKNNGKWDSEYDILLNKFNDQYISKEYSKLSISGYIETLRNRCAHGRFIFKKTDERGITQLDNKGLLELQEFMPLMIEIVVTSINSNKDTVGKFIVGLNRK
>NC_018068.1|WP_014826492.1|1527151_1527619_+|GNAT-family-N-acetyltransferase
MEIKIVEGEIKYIDDCLEALMNSELACTYLPDEKTAKKHLVEAFERKEMYLALNDESECLGYIRFVLNGTFYDFPYVCNIAVKKNFRSRGIGKRLLGYFEEIGFTHSDKVFLLVSSFNEHAKKLYESIGYKQVGLINDLFKDGISEYIMMKVKSL
>NC_018068.1|WP_014826491.1|1526308_1527016_+|DUF3027-domain-containing-protein
MKKDFPELLYQAVGLSCCDASFSYGNVLCIGLGERVYYTHPSLRDVFRGEWDIRSYNSAWRLVKDNQIICGYYDLQEESGPKLELLIGHKLIDIKKISCLDVGFIFDDGFEIDFLGQSSSGRILEILLPGDINLELKNSEWIQYISDEKITGLSNEELLISEYSKRCHKRWETLIPQKKSINYCDKCSYFRPISGQFYFWDYGLCSNELSEQDGKVVNVRYGCLYYDNTLPTVEG
>NC_018068.1|WP_014826502.1|1541802_1542225_+|Mn-dependent-transcriptional-regulator
MLSPSLEDYLEEIYRFSLTLDIVRVTDISHRLNVALPSVTKALYKLRDQQYINYERYGEIRLTDKGRETGSYLVLRNQLLQEFLGLICSKCNFVAEAEAMEHYLSTATIDAIKTLVEFMKNNPSCQQAFEDFMFVKANKE
>NC_018068.1|WP_083845558.1|1543150_1544374_+|CBS-domain-containing-protein
MMELLTDLFVSELIGKYIIDRSGLKLGKVRDVWVDPETTFPTVRGLIIKYNGELKVVPWKEIYMLSRQVVALRVIASEVRFERVSEGHLYISGILDRQIVDINGAKLVRVNDIKLAGNSKGVHIVSIDVSFVGLIRRLLPRGMFSMPTSGKRLQPHFIGWDMVQSLSTGGDSLSLRASGDKLSKIHPADLADILENISHYERLELFEQLNPEMAADTLAEVDPDVQKSILRQINKERAADILEEMEQDEAADLLSEMNEDDSDQLLSLMENEAASDLRELLEYDEGTAGSLMTTDFLVFSIELTADEVIKQLRELAPEADYIYYLYAVDSEGRLKGVISLRELIISSPETRISELMHTKVISVLADEDEKKIRRLFSKYSLLALPVIDKSDKVIGLITVDDVLQLKN
>NC_018068.1|WP_014826505.1|1544429_1545680_+|Nramp-family-divalent-metal-transporter
MKLSKLSWRNILLFLAIVGPGIITANVDNDAGGITTYAVAGAQFGYKFLWIFIPMTLALIVVQEMSARMGAVTGKGLADLIRENFGVRLTIFILIGLLIADVGNTVSEFAGVASSMEVFGVSKYITVPLGALLVWFLVVKGTYRRVERIFLIASAIFITYIFAGFLAHPNWGEVAKATFIPSFSTNSEYLAMFVGLVGTTIAPWMQFYIQSAIVEKGVTAKEYKFSRLDVIFGCFITDIVAVFIIVTTAATLHTAGVSINDAKDAAIALRPLAGQYASILFAFGLFNASIFAATILPLATAYYVCEALGFEAGVDKSFSEAPQFYTLYTIIIILGALIILIPNAPLVLIMLWSQVINGVLLPFVLVFMLVLINKKRIMGDYTNSKFFNGVAWSTTAVMVTLTLLLVVTSLWPNFLG
>NC_018068.1|WP_014826506.1|1546035_1546668_+|nitroreductase-family-protein
MELQEAIVKRRTIRDFSEQKINPDIINKALLAGLKAPSYNHLKQWYFILVSDREKRIALIHTEKMIESVTEELEESLKDFDNLSKQMYLDAIPKQKRMMLSAPELLVVVYKPKTQIADSTRIYDLNCLASVWCCIENILLSLAEDSVFGVTFIPQNTKAVKEVLNIPPELEVAAIIPFGYKANNATLIPQKEVRLEDRLFMNRWTKENPI
>NC_018068.1|WP_014826507.1|1547034_1547412_-|TIGR03987-family-protein
MLTYAIIFINFALIFYSVGVWSEKIQGNLKAWHLTFFYFGLVCDTTGTWIMENIARSIEIITSNSYFHSITGVLAIILMLVHAFWATFVLIKKDDLMINKFHKFSIFVWIIWLIPFISGFVFRMI
>NC_018068.1|WP_014826508.1|1547521_1548058_-|TetR/AcrR-family-transcriptional-regulator
MPKIIENLNETIILEGRKLLSNKGYKELNVREIAKNCNIALGTFYNYFPTKDELILEIVREDWSQLSDLIEKLKPIDEPIKEKIRKVFLSLEIFISSYVAIFIEMAMYKNYSYDHMSHDKFHLLYGKLSELIDLEKTKGHIQSPLASYKLAQLIMSNLIYLNTNKYISYDELYDSLKI
>NC_018068.1|WP_014826509.1|1548727_1548889_-|hypothetical-protein
MNYEQMWNVLLKKLKFECEKVNGINGSTKEDHIKFVALYSIVKIMEDLEENKI
>NC_018068.1|WP_014826510.1|1549248_1549587_-|LysM-peptidoglycan-binding-domain-containing-protein
MYYGTAYPGDSLMMSGMQQQSFPAGMQTSAYSAGMYADSPLVVAKPVPSPCDPCNVEYVPVARIHIVRRGETVYSIANSHGLDWRELAGYNRLGNPNLIYPGEHLEIPPSHY
>NC_018068.1|WP_014826511.1|1549778_1549931_-|LysM-peptidoglycan-binding-domain-containing-protein
MHNRHVVRRGESLHKIAKRSGTSVHHLLRLNPWLRRNPNLIYPGERIRTW
>NC_018068.1|WP_014826512.1|1550344_1550881_+|DUF4256-domain-containing-protein
MENIELFGALQARFEKNMNRHKGLEWTKIQAKLEANPEKLWALNEMERTGGEPDAVGFDETTDEYIFYDCSEESPKGRRSICYDREALESRKEHKPENNALDMAAAMGIELLTEEQYRELQKLGKFDTKSSSWVKTPANIRKLGGAIFCDRRYDTVFVYHNGAECYYAGRGFRGSLRM

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Crispr_ID: NC_018068_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018068_2

3560371-3560795

Orphan

Consensus_repeat	Method
GCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATGGTCACAGTGCCGCCGCTACCGCCGA	PILER-CR

3 spacers

The CRISPR arrays of NC_018068_2

>merge|NC_018068|2|3560371-3560795|PILER-CR
GCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATGGTCACATTGCCGCCGCTGCCGCCGCTGCCGCTGCCACCGCCGCCACCAATGCCGCTGCCGCTGCCGTTGAAGTAAATGCCGTCGCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATAGTCACAGTGCCGCCGCTGCCGCCGATGCCGGTGCCGGGGTCGATTGAGCCGCCACCGCCGCCGCCAATGCCGCTACCGCCACCGGTAGTGCCGCCGCTGCTGCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATGGTCACAGTGCCGCCGCTACCGCCGACAATGTAGTTGTCATAGCTGCCGCCGCCGCCGATGCCGCTGCCGCCGCCGCCACCACCGCCTGTTGCAGTAACCATGCCACCGTTGATGGTCACAGTGCCGCCGCTACCGCCGA

>NC_018068|2|2|3560371-3560795|PILER-CR
GCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATGGTCACATTGCCGCCGCTGCCGCCGC	TGCCGCTGCCACCGCCGCCACCAATGCCGCTGCCGCTGCCGTTGAAGTAAATGCCGTC
GCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATAGTCACAGTGCCGCCGCTGCCGCCGA	TGCCGGTGCCGGGGTCGATTGAGCCGCCACCGCCGCCGCCAATGCCGCTACCGCCACCGGTAGTGCCGCCGCTGCT
GCCGCCTGTTGCAGTAACCGTGCCGCCGTTGATGGTCACAGTGCCGCCGCTACCGCCGA	CAATGTAGTTGTCATAGCTGCCGCCGCCGCCGATGCCGCTGCCGCCGCCGCCACC
ACCGCCTGTTGCAGTAACCATGCCACCGTTGATGGTCACAGTGCCGCCGCTACCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018068.1\|WP_014828292.1\|3555796_3556915_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NC_018068.1\|WP_014828283.1\|3541154_3544169_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133045
NC_018068.1\|WP_041276115.1\|3571705_3571975_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_018068.1\|WP_014828290.1\|3553244_3553988_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_018068.1\|WP_014828295.1\|3562262_3564245_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|340412
NC_018068.1\|WP_014828286.1\|3547454_3549173_-\|hydantoinase-B/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|376810
NC_018068.1\|WP_014828294.1\|3561798_3562131_-\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_083845609.1\|3568486_3569092_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188121
NC_018068.1\|WP_014828289.1\|3552680_3553211_-\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_014828287.1\|3549153_3551232_-\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NC_018068.1\|WP_014828284.1\|3544165_3546190_-\|response-regulator	unknown	unknown	gnl\|CDD\|293795
NC_018068.1\|WP_014828285.1\|3546479_3546767_-\|DUF1049-domain-containing-protein	unknown	unknown	gnl\|CDD\|227703
NC_018068.1\|WP_014828296.1\|3564241_3564970_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_018068.1\|WP_014828297.1\|3565757_3565988_-\|hypothetical-protein	unknown	unknown	unknown
NC_018068.1\|WP_014828298.1\|3566886_3568284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185219
NC_018068.1\|WP_014828291.1\|3553962_3555507_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NC_018068.1\|WP_014828302.1\|3574298_3574421_-\|cyclic-lactone-autoinducer-peptide	unknown	unknown	gnl\|CDD\|275064
NC_018068.1\|WP_014828288.1\|3551244_3552618_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_018068.1\|WP_014828301.1\|3572413_3574189_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NC_018068.1\|WP_014828299.1\|3571388_3571700_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194

Protein	Function_ID	Function_description	E-value
NC_018068.1\|WP_014828292.1\|3555796_3556915_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	1.76966e-164
NC_018068.1\|WP_014828283.1\|3541154_3544169_-\|glycosyltransferase	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	1.37696e-52
NC_018068.1\|WP_041276115.1\|3571705_3571975_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.04999e-05
NC_018068.1\|WP_014828290.1\|3553244_3553988_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.1782e-20
NC_018068.1\|WP_014828295.1\|3562262_3564245_-\|GHKL-domain-containing-protein	gnl\|CDD\|340412	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.	2.4967e-34
NC_018068.1\|WP_014828286.1\|3547454_3549173_-\|hydantoinase-B/oxoprolinase-family-protein	gnl\|CDD\|376810	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family includes N-methylhydaintoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9 which catalyzes the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to pfam01968.	0
NC_018068.1\|WP_014828301.1\|3572413_3574189_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.88005e-53
NC_018068.1\|WP_083845609.1\|3568486_3569092_-\|hypothetical-protein	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	1.16838e-09
NC_018068.1\|WP_014828296.1\|3564241_3564970_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	7.75566e-33
NC_018068.1\|WP_014828287.1\|3549153_3551232_-\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	6.39139e-173
NC_018068.1\|WP_014828284.1\|3544165_3546190_-\|response-regulator	gnl\|CDD\|293795	cd07709, flavodiiron_proteins_MBL-fold, catalytic domain of flavodiiron proteins (FDPs) and related proteins; MBL-fold metallo-hydrolase domain. FDPs catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively. In addition to this N-terminal catalytic domain they contain a C-terminal flavin mononucleotide-binding flavodoxin-like domain. Although some FDPs are able to reduce NO or O2 with similar catalytic efficiencies others are selective for either NO or O2, such as Escherichia coli flavorubredoxin which is selective toward NO and G. intestinalis FDP which is selective toward O2. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. Some members of this subgroup are single domain.	8.5272e-64
NC_018068.1\|WP_014828285.1\|3546479_3546767_-\|DUF1049-domain-containing-protein	gnl\|CDD\|227703	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown].	3.08934e-10
NC_018068.1\|WP_014828298.1\|3566886_3568284_-\|hypothetical-protein	gnl\|CDD\|185219	PRK15319, PRK15319, fibronectin-binding autotransporter adhesin ShdA.	1.22354e-05
NC_018068.1\|WP_014828291.1\|3553962_3555507_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	7.7432e-76
NC_018068.1\|WP_014828302.1\|3574298_3574421_-\|cyclic-lactone-autoinducer-peptide	gnl\|CDD\|275064	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide. Members of this family of short peptides are precursors to thiolactone (unless Cys is replaced by Ser) cyclic autoinducer peptides, used in quorum-sensing systems in Gram-positive bacteria. The best characterized is the AgrD precursor, processed by the AgrB protein. Nearby proteins regularly encountered include a histidine kinase and a response regulator. This model is related to pfam05931 but is newer and currently broader in scope.	0.00037603
NC_018068.1\|WP_014828288.1\|3551244_3552618_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	1.46508e-140
NC_018068.1\|WP_014828299.1\|3571388_3571700_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.51065e-08

>NC_018068.1|WP_014828292.1|3555796_3556915_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MTTLKKIHGLDNLKKADIQQLEAALQELTNGIEKLDQESISGMQKRLDAKIKPLRSLGVLEDISQQLAGIQRTSQPEIKGKAVLLMAGDHGVVAEGVSAAPQEITAQMFYSYLNGEAGINVLARNSGAKVICTDIGIALPLDPPELMANRVKNGTGNIAHGPAMTKQEALLALLTGAKVAAEAIDSGINLLATGEVGIGNTTPSAALISAFTGHTVEEVTGRGTGLKDDALKHKQDVIKLAIRVNEPDLADPLDTLAKIGGLEIAALAGAILEAAYQHVPIILDGIISTAAALTAAQIAPLSALYMISSHNSEEQGHRIALKQLGLKPRLDFNMRLGEGTGAALMFPMVEAALKIADEMATFESAGVSTGDF
>NC_018068.1|WP_014828291.1|3553962_3555507_-|ABC-transporter-ATP-binding-protein
MNVIAKIKIDKLKFPNNESLVLKNINLEINQGDFIVITGGVASGKSALLHVMTGAIPHYHNAELSGTVTIMGQDIKEMPLNRMSDYMGFMMQEPNNQIISLNVYENVAFGLENQELPCDQIDQVVKNTLEFVGLGGYEKRQTSSLSGGQAQRIVLAGVLALKVPILILDQPTAELDPQGRQEIYKRLGELNQTQNLTIVLVMDRIEEVLNYANRVLILKDGEIIKEYSPREYYWDQIKYRKKMLRTGRHFFLNSNKPKESIAKISDVSYQYNNQLPGCEDINLEVFKGDFVSVVGLNGSGKSTLAKLLIGLLKPAKGEIHLFDQKIAKRNLRKILARVGFLFQNPDHQIFASTLEEEVGFSLKLRGERNDFLNQKIDECLQFVGLAEYKEMHPQRLSRGQRQLLALASILAGEPEFIIADEPTSGLDENQGYMIMEKLYDLSNNGKTILLITHDLAMAKDYSNRLVALYKHRIRLDIETKDIERHREELKAIGLDFPNSVTFKEGYDDTGTSEV
>NC_018068.1|WP_014828290.1|3553244_3553988_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MTRALPKFDPRTKLVWYILMIYFALLSQTAAQLGITLLVCITSSLILSGSFKHSKAMVIILLLLGLQILIIQLLFCREGTLIYQWGILKIYSDALPLAITGILKATLIFYTSLQFFTSASAQDFTLMLVKFKIPYRFAMLVGLGARFLPLMKEEYQSIIDSQRTRGLKMDSVWDDLKAIIPTFLPFLYRAVRRSTEIALAMELRGYGRSKKRTFSSDIALKSHDVVLIASMFLVISLSITTRLLPLI
>NC_018068.1|WP_014828289.1|3552680_3553211_-|hypothetical-protein
MKEKLFRTDTKALVGAVIIGIVFVIMEQITGRIDGILDPTLLLLNGTCWAFFTGLIVLMYKQPAGIIAGLVEAIVAMATAYSPLAFFFIFANTIGSIVYSLIALKLSMTKLSHHLLAMLGCNVIGNLCVTIGLIYVIHLDWKIALLSSALTALVGTIVAGSLTKSVYGSLQKSALL
>NC_018068.1|WP_014828288.1|3551244_3552618_-|UbiD-family-decarboxylase
MEQDLRGFIERVKSQNPSEVIRVQEEIDPKYEISTLIMELEKARRCPLTIFDNIKGHAISVVANVLAPRDRLALALEVAPHDLAAEYSKRINQRIDPVEVDEAPFRENVLIGSEADLFKLPILTHFPIDAGPYITAGLVIAKDPETGVETAGYHRMQLKGKDKLGISLHSRQRLWEYFRRSEELGKSLEAAVVLGIHPNISMGSMALVPYHLGKYAAMGGLFGAPLEVARCKTIDLMVPAFAEIVIEGEIVAGERESEGPFAEFTNYACYRSTENVFRVKAIQYRTKPLFQDITPGMSSEHITIVAVQREGDVLNALNRTLPNVKNVHAPVSACGLFHCYISLKKIAEGQAQQAIFTAFSVDHNLKMVVVVDEDVDVFDERQVLWAMATRLQADRGVTIVPQHMGMGCTLDPSSDELSRTSKMGIDATKPLSGFAPTVEMSAEVQKQIRRFMGSFGL
>NC_018068.1|WP_014828287.1|3549153_3551232_-|hydantoinase/oxoprolinase-family-protein
MYEIAVDIGGTFADFVARDKQGRALTVKIPSKREDPEETIISGLRDLAQKSGLKLKEFMPQIDKFVHGTTVGINALLQGQGAKTALITTEGFRDALELRRSQLSEQWDFGLPLPPVLVPRYLRIGLRERMDYRGVPLISIDQAQIAEIAEFLVQEKVESVAVCLLFACRNPTHEKEFKYLLQALLPNVFISLSSELSSQVGEYERTSTTVLNARLSPLLSNYLLEISNHLQDFGLKVPISIAQNNGGLTDLVQARKKAVTTLFSGPAGGVKGGWALAHELSLSELVVTDMGGTSFDVSLIRLGKMEVTPQSEVAGYPLQLPMLDIHTVGAGGGSVAWLDHGGMLRVGPHSAGANPGPACYGLGGAEPTITDAALVMGLIDAHDFLGGRMILDVEQAFKAIETKIAHPLGLSVPEAAYAIYKVALSLMIDAVYLMTVKKGYDPRLFSLAAVGGALPLFATALASGIGINKVVVPEMAPVFCAQGLHYAPFQVEVSSTVFEPLGESVNSNLQQTLLQLKDQADQEMSRLGITEDQRSYVWSADLKYPDQHHEISIELPCDVADFPLWQQLGQEFHAQHQRLYGYCQTEKSLTLVNVKLLVKEKEKIPSDQTEHYTILETPDDGMCSLYLNGKFQTLKSYRWKNLKPGMCLKGPAVIKKEYTTVLLEYNCQAYIDQFGNLLIYLGRDALNECQSG
>NC_018068.1|WP_014828286.1|3547454_3549173_-|hydantoinase-B/oxoprolinase-family-protein
MNAKVDEVIERSVIANRLDTITKEMGCALEKSSRSPIFAEACDFACGICNGKGELVSQINGIPILAAAGTFSVQEVIKKYSGQIHDGDVFIINDPYQGGNHLPDIGIITPLFENGEILFYCVSRAHHGDIGGSVAGSYNPKATEIYQEGLRIPPIKLISRGRIIPEVQELILRNVRNPQMLQSDLWSQIGANNIGIARLRELLNHYSAYRIKETVEYLLNHAEELTLQAIKRIPDGEYTGEEWVDDDGFQANPIKIRVTVKVLEEKMTLDFSGTDSQVLGFVNSALVTSTSAAWIGALWALGSHIPRNSGAFRAISVVLPEGSLLNPADPAPVTLSTLTPASEIISAVFQALEPVACGQLPAGFGRYCGPSFYGIDPRNHEFYVGFAFCALGSGGGLEGRDGYPYMAPLSNYGGVRAPNIEVNEIQYPHLTLCHEFEMDSAGSGMWRGGPGIRYSLKFYGGNTTIVMFGDGMKIPPFGSSGGKPGSLNQVELTSAEEETIYLRSKEGARSLQSEEVLTIISSGGGGWGDPYQRDPELVRQDVRDGIISLLKARQDYGVVLTDKSIDQGETEK
>NC_018068.1|WP_014828285.1|3546479_3546767_-|DUF1049-domain-containing-protein
MIILILTLVFALLVAIFAVQNADSVIIQFFWVTEKVPLVLVILASALAGALIVFLLAIWREFRYKRKKAVNSKPLATSDVIAHKEKEETPEPEAK
>NC_018068.1|WP_014828284.1|3544165_3546190_-|response-regulator
MNTNVVEIAEDIFWVGGSDQEGGLHCNPYLLIDGDEAVLIDPGSVLDFDYVFENVCSIVPLAKIKYIVLHHQDPDLCASVPLFEQKGAVFEVVTHWRTQTIVKYYGIKSKYYSVNEHDFRLTLKSGRVLGFVQTPYLHFPGAIATYDYSSKTLFSSDLFGAFSYGWSLYAGEDYLEKMKTFHEHYMPSNDILRPVMEVFLGMDISMIAPQHGSIIRNNVTKYIKALRDLECGAFMAPLKKDLAKSGGYQLICSLVFKRYAAIFNKTEVLEAINDLDISFDQETLEISDYNYTGKVLWNLLFERFLARKGLQWLIVIEPFVKRLAEEYDISIPEVFITTLKRAEEEAVNLTNENVRLKEMNDKLNNSVREAQESLIKCPVTGLYNYQFFRNYLESELKDLLTEQFYQNPALILINTDNMAKIKFSYGDKEVDEVLKNIVYIINDLKDENTVLFRLQGASFACYLPHILKETAVEFAEKVRNEIAASNKFIEKITVSIGVISLEEIRDLDTYVNDPAEALYNIALMRVRLAKNMGMNIVCQSSSVETYQEELGRILVVDNDAMSIDVLKTFLESLNYQVFTANDGEQALEIAERQSLDLIISDVMIPKIDGFLVREKLLSQSHTKNIPFILISHLKNDDSVKRAMSLNIDHYLKKPFMLSELLGLVTNRVKGAAFL
>NC_018068.1|WP_014828283.1|3541154_3544169_-|glycosyltransferase
MNYSIQLSMVVVFFLSALNLVIIGSLLYGRLHNSIAEGISLEQQRRLLKLLSGKIVDLKQKGLIINYLNLRETIELNEQTIGNVNKAVDIFKSNRNYLQKLKSRSRIKRIEAAVFLGFMGNDAARIAMEKAILREKDYPVKLYIANALTEIADPESLPVLVSSLKNSHRWYRERVNMLISDFGDAFNAYLTQISGSELIEIKELIVDFASVNFSETVKDYLLELIDCKEEAIKKLQTLYGASTEKACRNCIFYAGSEDQDKGVCKFQGAVSSSYVCQRHQVLPVSVNYKENYTKLVYKAADILARYYPKVLDHPKYLSSEDIELRNLAIQSLANIKTLGNLTKVLSLLNNEGNARSVVNSVTKIIERNPSYIHVVVKQFEKEKDSAVRLRLSEILANKIAYFIMKLGKQDGKAVGDIIKQVILLGHTSEVIDFLNKNKDLDLENELLAIIKDVIRQSDKHKNEFKRYLNERLVHKCGLIKTEEIPAKKEEQKDWKLIRSLYLILFSILVFFPTLYCLRHQDILFTAPLAEQVKLFVIDFNYYLAYYSITINLIYLTLLALSYVNVKKQLKLWRIKSLSLLFKPKMLPTISIIAPAYNEEKTIIESANSLLNLKYPDYELVIVNDGSKDNTLEVLINYFDLMRVDYVFDNKLNTKPIRGVYQNRSIPKLIVVDKDNGGKADSLNAGINISNKEYFCGIDADSLLEDDALLKLASLTLDKGVETPALGGNIFPINGCTIERGQIKDVRIPENPLARFQTIEYIRAFMAGRLGWALTNSLLIISGAFGLFRKERVISVGGYLTSSGKYAKDTVGEDMELVVRISRLMRELGQNYRICYAFNANCWTEVPEDLESLKKQRYRWHKGLIDILTFHKTMLFNPRYGRIGIVAMPYFLFFEMIGPLLEALGYLMVIAAFILGLLNAQIALLLFISTILMGVLVSVSSLLIAEKDKTYFKLRDIMLLIIYAIIENFGPRQLFSLWRVGGYLNMLKKPGGWDKPVRRGFTAKV
>NC_018068.1|WP_014828294.1|3561798_3562131_-|hypothetical-protein
MHYQLYPQTNQTRIFTEKNSRSKIPYCTARKMRELYPDEDFVIIGEIGNFAEVFGGQDVLLTGSGKAIPIFPRGSLMKPLEWIAGYVAVGENTYVAAVRSIIPTFLRCRK
>NC_018068.1|WP_014828295.1|3562262_3564245_-|GHKL-domain-containing-protein
MKEAKHTKAHLIAGLIFVILFSHLPVIYTLFYHNLTGAPTASGGNINLTGRSPARKIVLDGKWEFYWNRLITGEPEQADKPNFLIRVPDYWSKYKINGKWLPASGFASYRLTLQGLDYPRPVTIYLPDFGSAYRVFIDGMPAAESGILSKDTRKIVTVPEAKLYPVTLSAGETHEVVIEAASTRFSGLYMAPVLEDYGRAIQEQSARDNIRFILFGTVLFSFFVLSVIYRLSFRKGIRSAWLPAMIVFVLLRLMLTTEFYSFWQKTVFFNLSYEATNGLMFFATFALKFLLIFLVQEQFGIAFSRKEKGFFFLYYTTIYLMYLFIPHGVYNRHLTIVLPVATFALEFYSFFKVYFGRQQLKKYGLLIYWGVVMAISGLIMDCYYINGNMYPNVSLALIVLLSAYLMILSLAYALRTADVYNDLALSSSRLALAKSQIAMQKEYYDTLSGQMNEIRAIRHDLRHFVGVIRGLAGEGRYTELERFVSEYAEKSETDPLPVFCENVVANSILGYYSLKAREVGIPFHCACSIPSRLAMSDSDLCVVLGNALENAIEACGNLDNPGARFLAAEARTVNSQLLLKIENAYNGSLNIQDRGYRSTKSGEFHGMGLQNIKKVVEACGGFVKTQHSGKVFTLMAAFPNPCAAEESRSVSSPDSSFRSS
>NC_018068.1|WP_014828296.1|3564241_3564970_-|response-regulator-transcription-factor
MPIKIAICDDTAEDTELLSGALYTFDPSFEIVIYTNGETLIDDFRDSGLSADILFLDIYMPGIDGIKTAQSLRGERKDLKIIFISSSKEHYPQAYEVFAFNYILKPLERERLYSVLDRAIDEIRREHSHKISFSYKSAVYSVDCRDILYIESRDKLLLFHLADGSTAQCYGKLDVIAQELPMQSFIRCHQSFIVNTSYVTEMAENHFRLGQVVIGISKKYLKPSKDQYYACLFSHMGRGPWG
>NC_018068.1|WP_014828297.1|3565757_3565988_-|hypothetical-protein
MKSEHEELVKTLTQLQTGRSDWMAEINERATRLARTLELEGIIEALGSNFIEFDDDSYRKIVQKIVVKERTKLYSI
>NC_018068.1|WP_014828298.1|3566886_3568284_-|hypothetical-protein
MKRKFIIPVCMLITSSLLFLNGCGSAKSSNSAIASVSTSTSASSGNNGPSGPGGQPGGAGNTAAVTGTATYTQSGNSATKTNQTITAAKANESAVKITNKGSYTLTDSKISTTGNSSSMDSSSFYGLNAAVLAESGSKTTISNTTITTSGSGANGVFATGTGSTADLTDVKINCTATGAHGVDATLGGVLNLKNVDISTAGNGASAAIATDRGGGTINAAGGTVTTTGTKSPGIYSTGNITVSDAAIKTAASEAVVIEGKNSAAVMNCTISSAKNWGVFIYQSFSGDAETGTGNFTMNGGSITANEGPMFYSTNTDAIINLKGAVINAASGTLLKAGADQWGTKGSNGATVTLNADSENLAGNIVLDNISSAKLNFKNCTILKGAINTGNTAKSITVDLDKTSTWQVTGTSYLSSLTDDDTSLANIVSNGNTIYYDSSASANSWLGGKTISLAGGGKLCPVTSMK
>NC_018068.1|WP_083845609.1|3568486_3569092_-|hypothetical-protein
MDYPGHGKSEMLQEFPVDYWRYNARVAIKLCQTLNFNKVNLIGTSGGAIVALNMALLEPLLVGKIIADSFGGDSLNSEDVATLRDQREEAKGNLRSILFWFLMHGLRWKKVVDADTKMIEQSSLSRKGYYCGDLSEITVPVLITGSLQDELIRDIEFRLKTFSNKLRSSKLLFYPTGSHPALLSNSREFDKLALEFLETDT
>NC_018068.1|WP_014828299.1|3571388_3571700_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKYKILRTDKAEEQLRELVFYIADDSGNVDIALGYLDKIETAINRLQEFPESGSIPRYSILKKQGYRVIIVEGPLVFYKINEEAELVIIYAIVDARREYRNLI
>NC_018068.1|WP_041276115.1|3571705_3571975_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MEAAIRPSADLRNHYSEISRQCRESRDAVIITVNGRGDTAVLGLQDYYQMKSELELLRTLAEAEDDVKHGRVAAIQDSFDDLRASLLER
>NC_018068.1|WP_014828301.1|3572413_3574189_-|two-component-sensor-histidine-kinase
MLKNIKTMLNKQSVIQKTLTKITVILFIFMIIFAISTENLFWNNVELKLENQSWMRESSIEQDLNKNALLINRIKRKADESKQAKINEIDTILSPLLKSDNKDLSGYYDIDLDTNFPLNNTKYASLKEMVLDHHTNTSWGENGAIFTKKPVYINGTLNGYAWLYLKATNVLFEPFQILTLTIIALLLVSALIVNLVRRYFNEIQFYLEEFTEMIIQRHEASTENEGIIQKLPELKPLMNQLSYYTENLNQMNSELEFERLRIERILEGVTDGFLTFDNNWQCTYINRVAKELFDNENILGLNLWEACPRIAATKTELKIKQAMIERKSLHWEDVGFGQLHQYYEYHAYPFEDGLTIFFQNVTSIKEQQNELNRLQRVNLIGQLAAGIGHEIRNPLTSVRGFLQLLSTKPNFKEQSEVLELMISEIDRANLIITDFLSLAKVNVEHAKYQNINDIVYNLYPLMQADAFNNNKEVRLNLNETENILLDTNEIKQLILNIVRNGLEATHTGGSVTISTLQEPAKVVLVIRDDGPGIPLEIQKRVGTPFFTTKDTGTGLGLAISQSIAQRHNASFDFETGKNGTSFIIKFPKHVG
>NC_018068.1|WP_014828302.1|3574298_3574421_-|cyclic-lactone-autoinducer-peptide
MKRVIFTFIAAGLLLLANVTSVFACGWLGYQPTAPKSLQK

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Crispr_ID: NC_018068_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018068_3

4175851-4175945

Orphan

Consensus_repeat	Method
TGTGAGTCTCAGTGCCTCTCAACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018068_3

>merge|NC_018068|3|4175851-4175945|CRISPRCasFinder
TGTGAGTCTCAGTGCCTCTCAACTCACACCAGACGGCGCACATGAAATGTGCCATCTCCCAAGCCCTCCCTGTGAGTCTCACTGCCTCTCAACTC

>NC_018068|3|2|4175851-4175945|CRISPRCasFinder
TGTGAGTCTCAGTGCCTCTCAACTC	ACACCAGACGGCGCACATGAAATGTGCCATCTCCCAAGCCCTCCC
TGTGAGTCTCACTGCCTCTCAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018068.1\|WP_014828860.1\|4168624_4169362_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NC_018068.1\|WP_014828876.1\|4186381_4187074_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NC_018068.1\|WP_014828870.1\|4180664_4181594_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223965
NC_018068.1\|WP_014828856.1\|4165703_4166156_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NC_018068.1\|WP_014828861.1\|4169348_4170290_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NC_018068.1\|WP_014828865.1\|4174475_4175516_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_018068.1\|WP_014828863.1\|4171940_4173779_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_018068.1\|WP_014828858.1\|4166464_4166815_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_018068.1\|WP_014828867.1\|4176474_4177686_-\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|223708
NC_018068.1\|WP_014828871.1\|4181727_4182573_-\|ModD-protein	unknown	unknown	gnl\|CDD\|238807
NC_018068.1\|WP_014828869.1\|4180169_4180520_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_018068.1\|WP_014828873.1\|4183477_4184539_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224043
NC_018068.1\|WP_174270324.1\|4177937_4179758_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_018068.1\|WP_014828875.1\|4185699_4186389_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213264
NC_018068.1\|WP_014828872.1\|4182597_4183440_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NC_018068.1\|WP_014828862.1\|4170316_4171432_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_018068.1\|WP_014828864.1\|4173809_4174412_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_018068.1\|WP_041276642.1\|4184522_4185233_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NC_018068.1\|WP_174270338.1\|4166899_4168231_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NC_018068.1\|WP_014828857.1\|4166169_4166346_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707

Protein	Function_ID	Function_description	E-value
NC_018068.1\|WP_014828860.1\|4168624_4169362_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.15324e-69
NC_018068.1\|WP_014828876.1\|4186381_4187074_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	1.56749e-89
NC_018068.1\|WP_014828870.1\|4180664_4181594_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|223965	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion].	5.53792e-86
NC_018068.1\|WP_014828856.1\|4165703_4166156_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	1.27109e-51
NC_018068.1\|WP_014828861.1\|4169348_4170290_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	4.05575e-100
NC_018068.1\|WP_014828865.1\|4174475_4175516_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.24885e-134
NC_018068.1\|WP_014828863.1\|4171940_4173779_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_018068.1\|WP_014828858.1\|4166464_4166815_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	6.95371e-54
NC_018068.1\|WP_014828867.1\|4176474_4177686_-\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	9.49091e-126
NC_018068.1\|WP_014828871.1\|4181727_4182573_-\|ModD-protein	gnl\|CDD\|238807	cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.	1.71453e-128
NC_018068.1\|WP_014828869.1\|4180169_4180520_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.10595e-15
NC_018068.1\|WP_014828873.1\|4183477_4184539_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	3.46177e-100
NC_018068.1\|WP_174270324.1\|4177937_4179758_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_018068.1\|WP_014828875.1\|4185699_4186389_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213264	cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.10221e-81
NC_018068.1\|WP_014828872.1\|4182597_4183440_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.30788e-86
NC_018068.1\|WP_014828862.1\|4170316_4171432_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_018068.1\|WP_014828864.1\|4173809_4174412_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	3.47168e-62
NC_018068.1\|WP_041276642.1\|4184522_4185233_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	3.20449e-79
NC_018068.1\|WP_174270338.1\|4166899_4168231_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	2.31526e-174
NC_018068.1\|WP_014828857.1\|4166169_4166346_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.48321e-12

>NC_018068.1|WP_014828865.1|4174475_4175516_-|heat-inducible-transcription-repressor-HrcA
MEMDERKRKILRAIVQDYIATAEPVGSRTIARKFDLGVSPATIRNEMSDLEELGLIEQPYTSAGRIPSDAGYRYFVDWLMDAQTLSNEDKEIIERESTKKICEIQEVVTHTSKLLSELTSLTSIVLGPQKGKSAFGKMHFLPYRPGQVIMVIVKENGVVENHIVNVGEDITAEDLQKVADVFNQKMKGYSLNQVKRSMLHEIYSELSRQRRLIDNALEMLDAILDDNEEDERIYLGGTLNMLNQPEFRDLDKVKSLFKVFEENEPLKKLLLPRQEGLNVTIGGENTLKEFRDCSVISATYKVNGKTIGAVGVLGPTRMDYAKVIAIVDFMTKSLTDVLARGKPRSF
>NC_018068.1|WP_014828864.1|4173809_4174412_-|nucleotide-exchange-factor-GrpE
MQKKEENLKNQTSKVNEEYMGDEAGSSGESIPGEDNSDKKDMDPAEKILTLEAELTQAKAKADDYYDRLMRLQAEFDNYRRRTQKEKTEITKYASEQLVGELLPVLDNFERAMCSTQNNPDITAFSQGVEMILRQMQTTLGKIGLKPMECVGQPFDPNLHEAVLRVESEEHPENTVVEELQKGYFLKEKVLRPSMVKVSN
>NC_018068.1|WP_014828863.1|4171940_4173779_-|molecular-chaperone-DnaK
MSKVIGIDLGTTNSCVSVMEGGEAVVIPNAEGNRTTPSVVGFSKTGERLVGQVAKRQSVSNPDKTVISIKRHMGSDYKVKIDDKSYSPQEISAMILQKLKTDAEAYLGQTVSKAVITVPAYFTDAQRQATKDAGAIAGLEVLRIINEPTAAALAYGLDKEHDQTVLVYDLGGGTFDVSILELSQGMVEVKATSGNNHLGGDDFDQRLIDYMVAEYKKSNGVDLSKDRVALQRLKEAAEKAKIELSGVTTSNVNLPFITMTEQGPQHLDMNITRAKFEEIIADLVEATVGPTRQALEDAKLSWNNIDQIILVGGSTRIPSVQEAIRKLSGKEPHKGVNPDEVVAMGASIQGGVLSGEVKDMILLDVTPLSLGIETLGGVFTRIIDRNTTIPTTKSQVFSTAADNQTSVDIHVLQGEREMASYNKTLGRFQLTGIPPAPRGIPQIEVKFDIDANGIVHVSAKDTATGNEQKVTITSSTGLSKDDIEKMKKDAELHAEEDKKRKDLIDAKNQADSMVYQTEKTLKDFEGKGDAGELDSIKKALEELKTAAASDNIDEINAKTEALTKVLHPYIEKMYQQQAANAQNAGAQPGEQGASKKDDDVVDAEFTEVDKDK
>NC_018068.1|WP_014828862.1|4170316_4171432_-|molecular-chaperone-DnaJ
MKRDYYEVLGVDRSAGEQEIKKAYRKLARQYHPDANPGDKSAEEKFKEVAEAYDVLNDPEKKARYDQFGHAGVDPNQGGGGFGDMGGFGDIFDMFFGGGGQRRNGPQRGADLRYAMTLTFEEAAFGAEKEIQIPRDETCTECQGSGAAPGTHPTTCSQCQGTGQIKVTQRTPFGHIQTARTCPACQGEGRTISSPCSTCHGKGKVRKVKTIKVNIPAGSEDGLNLRLSGDGEAGAKGGPPGDLYIVLQVKPHKFFDREGNDVYCEIPITFIQAALGAEVDVPTLDGVVKMKVPEGTQTSTVFRLKGHGIPYRRGSGRGDQHVRVILTTPTKLNEKQKQLLRQFGEATPDHQQMGKKSLFEKFKENLRDAMG
>NC_018068.1|WP_014828861.1|4169348_4170290_-|50S-ribosomal-protein-L11-methyltransferase
MDWREVAVTISAEGEEIVADLFYQLGCPGVSVDDPEILRGYIESGTWDFHDFGEVEYTGTAVVKGYFPEDNELPGKLEKLDLGIRELLERFPEWVVQVKGISLKEEDWATAWKAYFKPVRIGKRFLIKPSWEQVNPSPEDIVLELDPGMAFGTGTHPTTTLCLRALETIVKPGQKVFDLGTGSGILAIAAAKLGAEVEAVDLDSVAVRVAQENVDLNQVSEKVRVLRGDLGTVLSGQAEIVIANIIADVIIMLLEDLKRILSPEGEFLASGIIEHRALDVEEGMKKAGLEILERVEDSGWILFRARWANHEPV
>NC_018068.1|WP_014828860.1|4168624_4169362_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MNRFKITELGKNAFWLRGTERDHLVRVLRLTPGDKVLGYDNSGMEYLGVILKIEDKSVTCRILSSDHPDVEAHTSVFVVAGLSKGEKMEWVIQKGTELGMEGLIPLRTKRSVMQLEGSKAQERVARWQKIASEASKQSHRVKEPRIGAVCNWGDLKDELPEGTQWLIPYEEEKTQRLASVLSTFDPELPIAILIGPEGGFEATEVARACEELGAKSVSLGPRILRAETAALAALTLVLGHYGDLG
>NC_018068.1|WP_174270338.1|4166899_4168231_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MDSAELRATNHESRLGAVCFLTLGCKVNQAESEALAQLFREANYDVVSSSEEADVVVVNTCTVTNTGGSKSRQAIRRMIKAHPDSIVVVTGCYAQTAPGEVLDIEGVDLVLGTQDRGKIIEWIERVKRERRPQNAVRGIEDAGEFEELPQLNEESRTRAFLKIQEGCNQFCTYCIIPYARGPLRSRQPEKALAEARKLVEEGYPEIVLTGIHTGFYGQDLNNGWNLARLVRELVEIPGLRRLRLSSIEPMEYTPELIDCIVSSDIVCPHVHMPLQSGSDEILVRMHRPYTLQDYRDLLIRLREKIPELAVTTDIIVGFPGETEADHLSTLNFVRDCNFAGVHVFPYSKRQGTPAADYPDQVPKKIKDQRVKELMAVARESKEAYIRRFIGKPVEVLIESVDSEGGAVGHTPHYIEVHLPKQKEITWTSRQLVQVVLKQDYLQR
>NC_018068.1|WP_014828858.1|4166464_4166815_-|histidine-triad-nucleotide-binding-protein
MYSDDCIFCQIAQRKIPSDIIYEDDQVVAFKDIQPLAPVHLLVIPKHHLTNVNDVTPDFEGLIGHLFGVMRRLAQEFGVAETGYRVVTNTGADGGQVVGHLHFHLLGGQALEAKIG
>NC_018068.1|WP_014828857.1|4166169_4166346_-|30S-ribosomal-protein-S21
MSEVRVGKNESLDAALRRFKRSCQKAGVSAEARKHEAYEKPSVRRKKKSEAARKRKFK
>NC_018068.1|WP_014828856.1|4165703_4166156_-|GatB/YqeY-domain-containing-protein
MSLKDRLVEDMKDAMKAKEEGKVRLSVIRMVRAAIKNAEIEKHIDFNDDQVIEVLARELKLRRDALEVFGKADRPEKVKALEEEIAILKAYLPQQLSKGEIRQLVQETITAVGAQGPKDLGKVMGALSPKTKGRADGKFVNLIVREMLGA
>NC_018068.1|WP_014828867.1|4176474_4177686_-|radical-SAM-family-heme-chaperone-HemW
MPSLYVHVPFCIQKCDYCAFYSHTLKDVPGDLIALYLEGLALEVAGRRKDAPQGVSSLFIGGGTPTVLTAENLERLMILITQNFAFEERAEKTVEGNPGTLTREKITIIRKYGINRFSLGVQAFDDRLLRNVGRFHSAQQARDAVRFLREAGFSNLNLDLMFGLPGQDMISWKTSIEEALAYKPEHLSLYGLMLEEGTPLYDRFREVPENSSLIGGAEIKDEFLRKTISEKDRDLPDDDLQAEMQEWVVKRLENDGYIQYETSNFSLPGFECRHNLGYWRGKDYIGMGPGGVSCLKRVRQKNVEDVRAYYTSLFEGREPLDDDGKEVLSLKDCMAERMILGLRLREGVSFSQFREDFGVDLRDIYGNVLERYQYGDFFEINGDSLCLNSKYSFVANGILKDFV
>NC_018068.1|WP_174270324.1|4177937_4179758_-|elongation-factor-4
MRGKTLAQASQRIRNFSIIAHIDHGKSTLADRLIEYTGALSKREMEEQVLDSMDLERERGITIKLQAVRLSYKAKDGEVYELNLIDTPGHVDFTYEVSRSLAACEGALLVVDAVQGIEAQTLANVYLALENNLEIIPVINKIDLPSAEPERVQQEIEDVIGLDASDAILASAKVGTGVEEILERIVTMVPAPQGDDQAALQALIFDSKFDAYKGAISYVRIVEGRVSKGTTMKMMSTGKEFEVTEVGVFTPAMKIVDELKAGQVGFIAASIKNVKDTQVGDTITDAERPAAEPLPGYRKSTPMVFCGLYPVETNDYNRLRDSLEKLHLNDASLVFEPETSAALGFGFRCGFLGLLHMEIIQERLEREYDLNLITTAPSVIYKVTTIIGEVLDIDNPSNLPAVDQIASIAEPVVKATILVPSEYVGAIMELNQEKRGTYVAMDYVSKNRVKLVYELPLSEIVFDYFDELKSRTKGYASLDYELSGYKESDLVKIDILLNGEMVDALSFIVHKSKSYNRGRKLVEKLQGIIPRQMFEIPIQSVIGNRVIARETVRAMRKDVLAKCYGGDISRKRKLLEKQKAGKKRMKQVGNVEIPQDAFMAVLKIED
>NC_018068.1|WP_014828869.1|4180169_4180520_+|carboxymuconolactone-decarboxylase-family-protein
MEDYFDNLDTIEKNLKYFTTTHENLYQAYENYGKLVHESGPLDQKTCWLIKVALSTECQYPYALRTHILKALTSGCTEEEIEHAIMLVAPTAGFPKTMFGILALRNVLDELDKNTQ
>NC_018068.1|WP_014828870.1|4180664_4181594_-|(2Fe-2S)-binding-protein
MEWLTLTIDGKEVCVPKGTTVLEACRLNNIPIPTLCHNPEFTPTGSCRLCVVQIEGMRNLPPACATQVTQGMKVETQTSKVRNARKMILELLVANHPLDCMTCQKLGSCLLAEYAYEYGVKGKVFQGEKRDLPIDDTNPYILRDLNKCILCGKCIATCEAVSERNVIGFAYRGFKTKVSTFMDTDLKDSDCVYCNRCVSVCPVGALMDRNTIGKGREWELTSEEVTCTFCESGCKFNLKLKDGTMIGVTAKSAAKGRPLCLKGRIGSDFRYNPDRTDRPFVKQNGEFVQVTWGEFLGLGGILEKINSLA
>NC_018068.1|WP_014828871.1|4181727_4182573_-|ModD-protein
MLYISDETIDRWLKEDVPYLDLTTRTLGIGDSRGKITFKAREFTVLSGVEEVVRIFAKVGITPLRFLPSGSVVNKGDVFIEAEGIASNLHMAWKLSLNILEYSSGIATRTKRMVDKVKAANPKVAVLATRKSFPGTKELSIKAILAGGAFPHRLGLSETILVFKQHMVFLGDIKDLAQRVGDIKAHACEKKLIVEVESIDDARLLAEAGVDGLQFDKIPAPLLKNIVEQIREINPHITLLGAGGINEGNIEEYALTGIDGLVTTSVYFGKPSDIGVTMEQY
>NC_018068.1|WP_014828872.1|4182597_4183440_-|molybdate-ABC-transporter-substrate-binding-protein
MFSGIRKNRRSRVIWGLMSCLFIFVLFISGCSGSAKEASTSTSGSANQSKQVKLMISTAPSLKGSFEIIKGLYEAKNPGVTLTFNYGPSGSLQNQIEQGAATDIYISQGKPQMDALEQKGLIKKDSRVNLLGDELVLIVKKDNTSIKSFEDLARPDVKKIGIGEAKSVPAAKTTQETLQTLRLWDALQSKMVVGKDLMQVMAYVETGNADAGFVWDTIAITSDKVKVAATAPADSHSPVVLPAAIIASSKNSDDAAKFLAYLQSDEAMKIFNSNGFAKVK
>NC_018068.1|WP_014828873.1|4183477_4184539_-|sulfate/molybdate-ABC-transporter-ATP-binding-protein
MELCVDIRKKLSGFELNLNFETSEDVLGLLGASGSGKSMTLRCIAGIETPDYGQIVLNGRILFDSQKGINLPCRRRRIGYVFQNYALFPHLTVEENIGFGIGELRRKDQKAIIKEMVTMIKLEGLEKRYPSQLSGGQQQRVALARALATKPEALLLDEPFSALDDYLRNHMVRQLTETLGKFPGAAVFVSHNMEEVYRVCRNLVILSRGIIEGKGGTKEVFKAPPSLAAAQLTGCKNISPAIYISPFELKALDWGITLKTNIKLSQDIKYVGIRAHLIGAVSDETKDNVLRCWLNFANEAPSRITLYLFIEKENPGQRGHQIEWEITPQMWRFMKIQPQPWKLWIDPEDLIIV
>NC_018068.1|WP_041276642.1|4184522_4185233_-|molybdate-ABC-transporter-permease-subunit
MFRGLDFSPLLISLRAATLATVVTFFSGIAAASFVSAYRGKFKGLIDGILTLPLILPPTVVGFLLLLVFGKYGPLGKLLLAIGTTVIFSWPATVIAASVVAFPLMYRTVRSAFEQIDPSIVYAARTLGVSEWKIFWKVTIPLAWPGVAAGTVLAFARALGDFGATLMIGGNIPGETLTIPAAIFFAAEGGDMEKALLWVILIFIISLMVMTLMNYWSDYQRKTIAASAGNSHGIMR
>NC_018068.1|WP_014828875.1|4185699_4186389_-|ATP-binding-cassette-domain-containing-protein
MLEAHFKKKLPSFELEADVSISNGILALVGHSGAGKTTFLQCVAGLQTPSWGEINISNKTVFSSELGTNVPIRKRRIGYLFQDYALFPHMTVEKNVLYGKPKEESVSEKVLTAGDVLEMLKITHLRNRYPDQISGGEKQRVALARALMTEPELLLLDEPLSALDQNTRSILQQELLRLQAQWKIPFILVTHDRQEAEMLGDQIIKIDQGKQEIIKGRSKREIIGELNRA
>NC_018068.1|WP_014828876.1|4186381_4187074_-|molybdate-ABC-transporter-permease-subunit
MDFSFVPIILSLKVALAAVIIVTCFSIPIAGLMARREFWGKDVVESIITLPLVLPPSVIGFMLLVLFGKYGPLGVFLEYFFHTRVVFTIEGAVIAAVVVSFPLMYQSVRVAMENVDPNLEKAARTLGAREVRVFFTITLPLAWNGIIAGLVLAFARSLGEFGATLMIAGNIPGITQTMPLAIYFANESGDMRTASILVIIMTAFSFLVIYGLNRWGKGSRRSSRGGGTNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018068_1	1.34\|1540278\|31\|NC_018068\|CRISPRCasFinder,CRT	1540278-1540308	31	NC_016936	Saprospira grandis str. Lewin plasmid, complete sequence	12229-12259	8	0.742
NC_018068_1	1.26\|1539743\|33\|NC_018068\|CRISPRCasFinder,CRT	1539743-1539775	33	NZ_CP016840	Brochothrix thermosphacta strain TMW 2.1564 plasmid pL21564-1, complete sequence	30184-30216	9	0.727
NC_018068_1	1.32\|1540143\|35\|NC_018068\|CRISPRCasFinder,CRT	1540143-1540177	35	NC_048773	Aeromonas phage 4_4572, complete genome	85755-85789	10	0.714
NC_018068_1	1.32\|1540143\|35\|NC_018068\|CRISPRCasFinder,CRT	1540143-1540177	35	MK838115	Aeromonas phage LAh_9, complete genome	35868-35902	10	0.714
NC_018068_1	1.32\|1540143\|35\|NC_018068\|CRISPRCasFinder,CRT	1540143-1540177	35	NC_048775	Aeromonas phage LAh_8, complete genome	9785-9819	10	0.714
NC_018068_1	1.32\|1540143\|35\|NC_018068\|CRISPRCasFinder,CRT	1540143-1540177	35	NC_048774	Aeromonas phage LAh_6, complete genome	74502-74536	10	0.714
NC_018068_1	1.8\|1538549\|34\|NC_018068\|CRISPRCasFinder,CRT,PILER-CR	1538549-1538582	34	MN694126	Marine virus AFVG_250M600, complete genome	33399-33432	11	0.676

1. spacer 1.34|1540278|31|NC_018068|CRISPRCasFinder,CRT matches to NC_016936 (Saprospira grandis str. Lewin plasmid, complete sequence) position: , mismatch: 8, identity: 0.742

caccgaaaggcatagttgcatttggtttcat	CRISPR spacer
cggccaaaggcttagttgaatttggtttgca	Protospacer
*. * ****** ****** *********

2. spacer 1.26|1539743|33|NC_018068|CRISPRCasFinder,CRT matches to NZ_CP016840 (Brochothrix thermosphacta strain TMW 2.1564 plasmid pL21564-1, complete sequence) position: , mismatch: 9, identity: 0.727

ataatgttgatcaaattagtgaatatcaatatc	CRISPR spacer
gaagtattgatcaaattattgaatataaatcaa	Protospacer
. *.*.************ ******* ***

3. spacer 1.32|1540143|35|NC_018068|CRISPRCasFinder,CRT matches to NC_048773 (Aeromonas phage 4_4572, complete genome) position: , mismatch: 10, identity: 0.714

tttaatgtcaacagccccttcggatttgtcgttct	CRISPR spacer
tccaatgtcaacagccacttcggttttgattccat	Protospacer
*..************* ****** **** . .. *

4. spacer 1.32|1540143|35|NC_018068|CRISPRCasFinder,CRT matches to MK838115 (Aeromonas phage LAh_9, complete genome) position: , mismatch: 10, identity: 0.714

tttaatgtcaacagccccttcggatttgtcgttct	CRISPR spacer
tccaatgtcaacagccacttcggttttgattccat	Protospacer
*..************* ****** **** . .. *

5. spacer 1.32|1540143|35|NC_018068|CRISPRCasFinder,CRT matches to NC_048775 (Aeromonas phage LAh_8, complete genome) position: , mismatch: 10, identity: 0.714

tttaatgtcaacagccccttcggatttgtcgttct	CRISPR spacer
tccaatgtcaacagccacttcggttttgattccat	Protospacer
*..************* ****** **** . .. *

6. spacer 1.32|1540143|35|NC_018068|CRISPRCasFinder,CRT matches to NC_048774 (Aeromonas phage LAh_6, complete genome) position: , mismatch: 10, identity: 0.714

tttaatgtcaacagccccttcggatttgtcgttct	CRISPR spacer
tccaatgtcaacagccacttcggttttgattccat	Protospacer
*..************* ****** **** . .. *

7. spacer 1.8|1538549|34|NC_018068|CRISPRCasFinder,CRT,PILER-CR matches to MN694126 (Marine virus AFVG_250M600, complete genome) position: , mismatch: 11, identity: 0.676

atcttacaccatttatctcttcttcggcaagagg	CRISPR spacer
ttcttaaaccatttatctcatcttccatatagca	Protospacer
 ***** ************ ***** ..* .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

910737 : 919541

Synechococcus_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014825930.1\|910737_911562_+	exonuclease domain-containing protein	G3MBN3	Bacillus_virus	4.4e-12	25.0
WP_014825931.1\|912103_912601_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.9e-24	44.7
WP_014825932.1\|912630_913926_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	6.3e-21	30.0
WP_014825933.1\|914123_914843_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	5.0e-44	40.7
WP_014825934.1\|914941_916342_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.7e-60	36.4
WP_014825935.1\|916375_917389_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	3.6e-72	45.4
WP_014825936.1\|917385_917982_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-25	38.0
WP_014825937.1\|917999_919541_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.5e-77	52.3

DBSCAN-SWA_2

1337286 : 1418808

Clostridium_phage(24.32%)

terminase,protease,integrase,portal,capsid,tail,plate,head,transposase

attL 1327651:1327672|attR 1418911:1418932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1327651:1327672	attL	NA	NA	NA	NA
WP_041275981.1\|1337286_1338369_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.7e-24	28.8
WP_014826282.1\|1338642_1339236_+	hypothetical protein	NA	NA	NA	NA
WP_014826283.1\|1339542_1340016_+	C-GCAxxG-C-C family protein	NA	NA	NA	NA
WP_014826284.1\|1340028_1341156_+	Na+/glutamate symporter	NA	NA	NA	NA
WP_148271268.1\|1341655_1342801_+	hypothetical protein	NA	NA	NA	NA
WP_148271380.1\|1343114_1343765_+	restriction endonuclease	NA	NA	NA	NA
WP_014826287.1\|1343874_1345533_+	DNA methylase	NA	NA	NA	NA
WP_014826288.1\|1346075_1346831_+	nitroreductase	NA	NA	NA	NA
WP_148271270.1\|1347009_1347201_-	hypothetical protein	NA	NA	NA	NA
WP_014826290.1\|1347380_1348208_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-07	69.8
WP_014826291.1\|1348510_1348696_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_014826292.1\|1348884_1349973_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.2e-18	36.9
WP_014826293.1\|1350083_1350479_-	response regulator	NA	NA	NA	NA
WP_014826294.1\|1350868_1351027_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_014826296.1\|1351605_1352061_-	hypothetical protein	NA	NA	NA	NA
WP_014826297.1\|1352658_1353441_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014826298.1\|1353779_1354226_+	purine-binding chemotaxis protein CheW	Q56AR1	Bacillus_thuringiensis_phage	1.2e-08	27.6
WP_014826299.1\|1354238_1355381_+	chemotaxis protein	NA	NA	NA	NA
WP_041275982.1\|1355772_1356678_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_014826300.1\|1357064_1357223_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_014826301.1\|1357432_1357597_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_014826302.1\|1357650_1357791_+	hypothetical protein	NA	NA	NA	NA
WP_014826303.1\|1358014_1358254_-	CDGSH iron-sulfur domain-containing protein	NA	NA	NA	NA
WP_014826305.1\|1358802_1360029_+	HD domain-containing protein	NA	NA	NA	NA
WP_014826306.1\|1360330_1360558_-	hypothetical protein	NA	NA	NA	NA
WP_148271271.1\|1360660_1361104_-	hypothetical protein	NA	NA	NA	NA
WP_014826308.1\|1361107_1361524_-	transcriptional regulator	NA	NA	NA	NA
WP_041275984.1\|1361783_1362134_+	hypothetical protein	A0A2K9V2W4	Faecalibacterium_phage	1.9e-17	45.1
WP_014826309.1\|1362137_1362350_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014826310.1\|1362513_1363338_+	phage antirepressor Ant	R9VWW9	Paenibacillus_phage	2.1e-54	47.2
WP_014826311.1\|1363334_1364579_+	DEAD/DEAH box helicase	A0A2H4J064	uncultured_Caudovirales_phage	5.6e-152	63.3
WP_014826312.1\|1364571_1364856_+	VRR-NUC domain-containing protein	A0A1B1P7M6	Bacillus_phage	7.8e-25	56.2
WP_041276319.1\|1364861_1366520_+	AAA family ATPase	A0A2H4J7Q2	uncultured_Caudovirales_phage	2.7e-165	59.2
WP_014826314.1\|1366537_1366987_+	DUF669 domain-containing protein	A0A2H4J1S8	uncultured_Caudovirales_phage	3.8e-34	48.7
WP_014826316.1\|1367255_1368950_+	hypothetical protein	A0A1B1P7M5	Bacillus_phage	3.4e-184	55.9
WP_014826317.1\|1369136_1371011_+	DNA primase family protein	A0A2H4J1M0	uncultured_Caudovirales_phage	1.1e-175	50.5
WP_014826318.1\|1371523_1371904_+	hypothetical protein	NA	NA	NA	NA
WP_014826319.1\|1372020_1372473_+	hypothetical protein	NA	NA	NA	NA
WP_014826321.1\|1372953_1373160_+	hypothetical protein	NA	NA	NA	NA
WP_014826322.1\|1373167_1373524_+	HNH endonuclease	Q38456	Bacillus_phage	1.2e-33	57.4
WP_014826323.1\|1373709_1374237_+	hypothetical protein	A0A2K5B277	Erysipelothrix_phage	2.1e-31	38.2
WP_014826324.1\|1374299_1375553_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.4e-121	51.1
WP_158310150.1\|1375839_1376358_+	HNH endonuclease	A0A0H3UZ74	Geobacillus_virus	1.2e-28	43.2
WP_014826326.1\|1376400_1376586_+	hypothetical protein	NA	NA	NA	NA
WP_014826327.1\|1376589_1377405_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	1.4e-21	29.8
WP_014826328.1\|1377404_1377644_+	hypothetical protein	NA	NA	NA	NA
WP_014826329.1\|1377746_1377998_-	hypothetical protein	NA	NA	NA	NA
WP_014826330.1\|1378173_1378383_+	hypothetical protein	NA	NA	NA	NA
WP_049804036.1\|1378478_1380050_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	7.9e-236	74.2
WP_014826332.1\|1380175_1381339_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.7e-78	40.1
WP_014826333.1\|1381338_1382406_+\|protease	Clp protease ClpP	A0A0B5A796	Paenibacillus_phage	2.6e-49	49.5
WP_014826334.1\|1382395_1383670_+\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	5.5e-62	39.1
WP_014826335.1\|1383703_1384180_+	hypothetical protein	NA	NA	NA	NA
WP_014826336.1\|1384254_1384848_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_014826337.1\|1384863_1385193_+\|head	phage head closure protein	A6M954	Geobacillus_virus	3.3e-19	43.1
WP_014826338.1\|1385185_1385599_+	hypothetical protein	NA	NA	NA	NA
WP_014826339.1\|1385598_1386033_+	hypothetical protein	A0A0A7RTL8	Clostridium_phage	7.7e-16	36.0
WP_014826340.1\|1386036_1387104_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	1.6e-78	47.0
WP_014826341.1\|1387115_1387544_+\|tail	phage tail tube protein	A0A0A7RVT1	Clostridium_phage	9.3e-38	54.3
WP_014826342.1\|1387598_1388000_+	hypothetical protein	A0A0A7RTP2	Clostridium_phage	3.5e-31	53.3
WP_014826343.1\|1388017_1388158_+	hypothetical protein	NA	NA	NA	NA
WP_041275985.1\|1388191_1390375_+\|tail	phage tail tape measure protein	Q6R868	Staphylococcus_virus	4.3e-46	30.4
WP_014826345.1\|1390387_1390792_+	hypothetical protein	A0A0A8WJR4	Clostridium_phage	8.2e-28	43.9
WP_014826346.1\|1390788_1391781_+	hypothetical protein	A0A0A7RWY4	Clostridium_phage	1.7e-58	38.4
WP_014826347.1\|1391790_1392159_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_014826348.1\|1392155_1392587_+	DUF2634 domain-containing protein	A0A0K2SUB3	Clostridium_phage	6.3e-18	37.9
WP_014826349.1\|1392579_1393653_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	5.0e-40	33.5
WP_014826350.1\|1393645_1394167_+	DUF2313 domain-containing protein	A0A0K2SUI5	Clostridium_phage	5.3e-11	33.3
WP_014826351.1\|1394167_1394734_+	hypothetical protein	NA	NA	NA	NA
WP_014826352.1\|1394733_1395069_+	hypothetical protein	NA	NA	NA	NA
WP_014826353.1\|1395077_1396721_+	hypothetical protein	NA	NA	NA	NA
WP_014826354.1\|1396734_1397073_+	hypothetical protein	NA	NA	NA	NA
WP_014826355.1\|1397073_1397211_+	XkdX family protein	NA	NA	NA	NA
WP_014826356.1\|1397267_1397507_+	hypothetical protein	NA	NA	NA	NA
WP_014826357.1\|1397694_1398015_+	hypothetical protein	D2XR31	Bacillus_phage	6.8e-09	39.5
WP_014826358.1\|1397992_1398478_+	hypothetical protein	I3VYU8	Thermoanaerobacterium_phage	2.3e-61	67.9
WP_014826359.1\|1398598_1399372_+	N-acetylmuramoyl-L-alanine amidase	A0A0A7AQV3	Bacillus_phage	5.6e-33	50.3
WP_014826360.1\|1399388_1399802_+	hypothetical protein	NA	NA	NA	NA
WP_014826361.1\|1400474_1400795_+	response regulator	NA	NA	NA	NA
WP_014826362.1\|1401240_1402227_+	diguanylate cyclase	NA	NA	NA	NA
WP_049804107.1\|1402512_1403100_-	hypothetical protein	NA	NA	NA	NA
WP_014826364.1\|1403430_1403592_+	hypothetical protein	NA	NA	NA	NA
WP_014826366.1\|1403848_1404124_+	hypothetical protein	NA	NA	NA	NA
WP_014826367.1\|1404484_1405072_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_014826368.1\|1405096_1405315_+	DUF1858 domain-containing protein	NA	NA	NA	NA
WP_014826369.1\|1405330_1406101_+	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_014826371.1\|1406478_1406916_+	DoxX family protein	NA	NA	NA	NA
WP_014826372.1\|1406928_1407321_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_014826373.1\|1407961_1409581_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	3.0e-97	41.6
WP_014826374.1\|1409594_1411127_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	3.1e-120	52.5
WP_169314523.1\|1411275_1411623_+	hypothetical protein	NA	NA	NA	NA
WP_014826376.1\|1411938_1412367_-	hypothetical protein	NA	NA	NA	NA
WP_014826377.1\|1412406_1413867_-	FTR1 family protein	NA	NA	NA	NA
WP_148271273.1\|1414314_1414512_+	hypothetical protein	NA	NA	NA	NA
WP_014826379.1\|1414840_1415422_+	hypothetical protein	NA	NA	NA	NA
WP_014826380.1\|1415450_1416563_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014826381.1\|1417005_1417314_+	hypothetical protein	NA	NA	NA	NA
WP_014826382.1\|1417446_1418808_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
1418911:1418932	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2689616 : 2769517

Paenibacillus_phage(33.33%)

integrase,transposase

attL 2694083:2694098|attR 2697444:2697459

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014826382.1\|2689616_2690978_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_083845586.1\|2691028_2691439_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.5e-45	82.3
WP_158310179.1\|2691557_2691878_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	5.5e-43	84.9
WP_014827524.1\|2692092_2692479_-	hypothetical protein	NA	NA	NA	NA
WP_014827525.1\|2692480_2693248_-	ATP-binding protein	NA	NA	NA	NA
2694083:2694098	attL	NA	NA	NA	NA
WP_148271405.1\|2694225_2695461_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014827527.1\|2695457_2696429_+\|integrase	tyrosine-type recombinase/integrase	A0A220NQQ9	Corynebacterium_phage	1.5e-06	27.2
WP_014827528.1\|2696415_2697435_+\|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	6.1e-11	23.8
WP_014827530.1\|2698404_2698719_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	2.0e-37	70.9
2697444:2697459	attR	NA	NA	NA	NA
WP_014827531.1\|2699409_2700525_-	aldo/keto reductase	NA	NA	NA	NA
WP_041276478.1\|2700677_2701046_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_014827533.1\|2701134_2701650_-	putative metal-dependent hydrolase	D0R7I3	Paenibacillus_phage	4.4e-26	51.8
WP_014827534.1\|2702287_2703682_-	GntP family permease	NA	NA	NA	NA
WP_014827535.1\|2703701_2704880_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_014827536.1\|2704957_2705704_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-23	32.7
WP_014827537.1\|2705700_2707275_-	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA
WP_158310211.1\|2707605_2709111_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_014827539.1\|2709546_2710206_-	hypothetical protein	NA	NA	NA	NA
WP_014827540.1\|2710556_2710757_+	hypothetical protein	NA	NA	NA	NA
WP_041276079.1\|2711325_2711544_-	hypothetical protein	NA	NA	NA	NA
WP_014827542.1\|2711548_2711872_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_014827543.1\|2711936_2712932_-	DMT family transporter	NA	NA	NA	NA
WP_014827544.1\|2713182_2713995_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_014827546.1\|2714258_2716688_-	hypothetical protein	NA	NA	NA	NA
WP_014827547.1\|2716677_2717829_-	hypothetical protein	NA	NA	NA	NA
WP_014827549.1\|2719203_2720163_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_014827550.1\|2720284_2720488_-	hypothetical protein	NA	NA	NA	NA
WP_049804121.1\|2720913_2721741_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014827552.1\|2721955_2723155_-	lactate utilization protein	NA	NA	NA	NA
WP_014827553.1\|2723154_2724141_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_014827554.1\|2724462_2725626_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_014827555.1\|2725878_2727120_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_014827556.1\|2727144_2727987_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_014827557.1\|2727986_2729000_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_014827558.1\|2729009_2729960_-	4Fe-4S ferredoxin	NA	NA	NA	NA
WP_049804122.1\|2729952_2730429_-	hydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_014827560.1\|2730470_2733503_-	CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein	NA	NA	NA	NA
WP_014827561.1\|2733655_2737708_-	helicase-exonuclease AddAB subunit AddA	A7KV33	Bacillus_phage	1.0e-08	22.3
WP_014827562.1\|2737700_2741330_-	helicase-exonuclease AddAB subunit AddB	NA	NA	NA	NA
WP_162470962.1\|2741590_2741737_-	hypothetical protein	NA	NA	NA	NA
WP_014827563.1\|2741699_2742425_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014827564.1\|2742425_2743841_-	diguanylate cyclase	G3MA91	Bacillus_virus	2.4e-18	34.4
WP_014827565.1\|2743953_2744799_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.7e-35	32.8
WP_014827566.1\|2744967_2746392_-	cardiolipin synthase	NA	NA	NA	NA
WP_014827567.1\|2746651_2747569_-	DMT family transporter	NA	NA	NA	NA
WP_014827568.1\|2747797_2749009_-	ammonium transporter	NA	NA	NA	NA
WP_014827569.1\|2749134_2749782_-	response regulator transcription factor	NA	NA	NA	NA
WP_014827570.1\|2749771_2751703_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	4.0e-48	33.3
WP_014827571.1\|2752139_2752610_-	nucleoside deaminase	NA	NA	NA	NA
WP_014827574.1\|2753437_2754145_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_014827575.1\|2754203_2756462_-	PocR ligand-binding domain-containing protein	NA	NA	NA	NA
WP_158310180.1\|2756526_2757549_-	PAS domain S-box protein	NA	NA	NA	NA
WP_014827577.1\|2757868_2758735_-	response regulator	NA	NA	NA	NA
WP_014827578.1\|2758746_2761452_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.7e-42	27.1
WP_014827579.1\|2761627_2762092_-	hypothetical protein	NA	NA	NA	NA
WP_014827580.1\|2762746_2763973_+	MFS transporter	NA	NA	NA	NA
WP_014827581.1\|2764245_2765706_+	MFS transporter	NA	NA	NA	NA
WP_014827582.1\|2765833_2767594_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_014827402.1\|2768152_2769517_-\|transposase	ISNCY-like element ISDsac1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3124263 : 3130075

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014827880.1\|3124263_3125121_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	9.3e-13	39.7
WP_014827881.1\|3125634_3126204_+	GNAT family N-acetyltransferase	A0A0N9SKF6	Staphylococcus_phage	8.6e-07	26.4
WP_014827882.1\|3126493_3127666_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-50	36.5
WP_014827883.1\|3127647_3128301_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.0e-39	41.2
WP_014827884.1\|3128374_3129577_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.0e-113	51.8
WP_014827885.1\|3129613_3130075_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-38	53.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection