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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015407 Mycoplasma mycoides subsp. capri LC str. 95010 plasmid pMmc-95010, complete sequence 0 crisprs NA 0 0 0 0
NC_015431 Mycoplasma mycoides subsp. capri LC str. 95010, complete genome 7 crisprs NA 0 2 2 0

Results visualization

1. NC_015431
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_1 125698-125783 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_2 219723-219818 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_3 251258-251445 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_4 647222-647327 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_5 657709-657863 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_6 777348-777499 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015431_7 1113925-1114025 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 13914-13941 4 0.857
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 24630-24657 4 0.857
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP017255 Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence 29317-29344 5 0.821
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_MK275621 Clostridium perfringens strain JXJA17 plasmid p3, complete sequence 52172-52199 6 0.786
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP013043 Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence 29205-29232 6 0.786
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 CP033544 Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-4, complete sequence 4128-4155 7 0.75
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 MN812211 Flavobacterium phage vB_FspS_laban6-1, complete genome 22174-22201 7 0.75
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP013715 Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence 71915-71942 7 0.75
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_AP017978 Neochlamydia sp. S13 plasmid pS13, complete sequence 215927-215954 7 0.75
NC_015431_3 3.1|251300|31|NC_015431|PILER-CR 251300-251330 31 NZ_CP022465 Enterocloster bolteae strain ATCC BAA-613 plasmid unnamed, complete sequence 19895-19925 7 0.774
NC_015431_3 3.1|251300|31|NC_015431|PILER-CR 251300-251330 31 NC_018265 Melissococcus plutonius DAT561 plasmid 1, complete sequence 24890-24920 7 0.774
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NC_010180 Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence 102476-102503 8 0.714
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NC_022602 Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR47, complete sequence 13483-13510 8 0.714
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NZ_CP031220 Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence 130123-130150 8 0.714
NC_015431_2 2.1|219757|28|NC_015431|CRISPRCasFinder 219757-219784 28 NC_022603 Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence 26396-26423 8 0.714
NC_015431_3 3.1|251300|31|NC_015431|PILER-CR 251300-251330 31 CP009871 Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence 24480-24510 9 0.71

1. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 4, identity: 0.857

ttataattttatcataaaaatacctacg	CRISPR spacer
ctataatttcatcataaaaataccaacc	Protospacer
.********.************** ** 

2. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 4, identity: 0.857

ttataattttatcataaaaatacctacg	CRISPR spacer
ctataatttcatcataaaaataccaacc	Protospacer
.********.************** ** 

3. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 5, identity: 0.821

ttataattttatcataaaaatacctacg	CRISPR spacer
tttaaattttttcataaaaatacctatc	Protospacer
**  ****** ***************. 

4. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_MK275621 (Clostridium perfringens strain JXJA17 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.786

ttataattttatcataaaaatacctacg	CRISPR spacer
cactaattttattctaaaaatacctatg	Protospacer
.  *********. ************.*

5. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP013043 (Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence) position: , mismatch: 6, identity: 0.786

ttataattttatcataaaaatacctacg	CRISPR spacer
cactaattttattctaaaaatacctatg	Protospacer
.  *********. ************.*

6. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to CP033544 (Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-4, complete sequence) position: , mismatch: 7, identity: 0.75

ttataattttatcataaaaatacctacg	CRISPR spacer
aattaatttaatgataaaaatacctatc	Protospacer
   ****** ** *************. 

7. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 7, identity: 0.75

ttataattttatcataaaaatacctacg	CRISPR spacer
ttataattttataataaaaatcaacaat	Protospacer
************ ********   .*  

8. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP013715 (Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence) position: , mismatch: 7, identity: 0.75

ttataattttatcataaaaatacctacg	CRISPR spacer
agttacttttatcaaaaaaatacctatt	Protospacer
   ** ******** ***********. 

9. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_AP017978 (Neochlamydia sp. S13 plasmid pS13, complete sequence) position: , mismatch: 7, identity: 0.75

ttataattttatcataaaaatacctacg	CRISPR spacer
aaataattttttcataaaaaaacctctt	Protospacer
  ******** ********* **** . 

10. spacer 3.1|251300|31|NC_015431|PILER-CR matches to NZ_CP022465 (Enterocloster bolteae strain ATCC BAA-613 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tattatactaaaaagtaagataataacttta	CRISPR spacer
ggatatactaaaaagtaagataaaagcttat	Protospacer
 . ******************** *.***  

11. spacer 3.1|251300|31|NC_015431|PILER-CR matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

tattatactaaaaagtaagataataacttta	CRISPR spacer
taatatactaaaaagtatgataaccatttgt	Protospacer
** ************** *****. *.**  

12. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 8, identity: 0.714

ttataattttatcataaaaatacctacg	CRISPR spacer
ttataatattatcataaaaatgaggtga	Protospacer
******* *************.     .

13. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NC_022602 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR47, complete sequence) position: , mismatch: 8, identity: 0.714

ttataattttatcataaaaatacctacg	CRISPR spacer
gctcctttttattataaaaatacctaca	Protospacer
 . .  ******.**************.

14. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 8, identity: 0.714

ttataattttatcataaaaatacctacg	CRISPR spacer
ctataattttataataaaaatatagcaa	Protospacer
.*********** *********.    .

15. spacer 2.1|219757|28|NC_015431|CRISPRCasFinder matches to NC_022603 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence) position: , mismatch: 8, identity: 0.714

ttataattttatcataaaaatacctacg	CRISPR spacer
gctcctttttattataaaaatacctaca	Protospacer
 . .  ******.**************.

16. spacer 3.1|251300|31|NC_015431|PILER-CR matches to CP009871 (Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence) position: , mismatch: 9, identity: 0.71

tattatactaaaaagtaagataataacttta	CRISPR spacer
tgcaccactaaaaaataagataatatcttgt	Protospacer
*..  .********.********** ***  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 968980 : 982462 12 Bacillus_phage(25.0%) transposase NA
DBSCAN-SWA_2 1076250 : 1150534 54 Bacillus_phage(22.22%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage