CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016609	Niastella koreensis GR20-10, complete sequence	9 crisprs	PD-DExK,csa3,DEDDh,PrimPol,cas3,cas2,cas4,cas5,cas7b,cas8b1,cas6,WYL,RT	1	5	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016609_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_1

582982-583073

Orphan

Consensus_repeat	Method
TGAAGCTTCGGCGGGCAAGGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016609_1

>merge|NC_016609|1|582982-583073|CRISPRCasFinder
TGAAGCTTCGGCGGGCAAGGAAGACAAGAAAGAAGAGGATAAGAAATTGCAGCGGTCACCCGCCTCCGCTGAAGCTTCGGCGGGCAAGGAAG

>NC_016609|1|1|582982-583073|CRISPRCasFinder
TGAAGCTTCGGCGGGCAAGGAAG	ACAAGAAAGAAGAGGATAAGAAATTGCAGCGGTCACCCGCCTCCGC
TGAAGCTTCGGCGGGCAAGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014216799.1\|597107_597404_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014216782.1\|565686_565974_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269823
NC_016609.1\|WP_014216785.1\|570326_573053_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274051
NC_016609.1\|WP_014216780.1\|563170_563848_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224566
NC_016609.1\|WP_107685603.1\|579005_582743_+\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_016609.1\|WP_014216787.1\|577294_578695_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014216784.1\|566449_570289_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|274051
NC_016609.1\|WP_014216793.1\|588880_589954_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014216798.1\|594007_596347_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|226855
NC_016609.1\|WP_014216795.1\|590676_592149_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_016609.1\|WP_014216794.1\|589958_590591_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NC_016609.1\|WP_014216781.1\|563910_565662_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|273730
NC_016609.1\|WP_041346228.1\|585913_587308_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_016609.1\|WP_014216786.1\|573071_577295_+\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014216779.1\|562991_563168_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014216792.1\|587383_588748_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_016609.1\|WP_014216797.1\|592976_593729_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_016609.1\|WP_107685604.1\|584177_585446_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NC_016609.1\|WP_041347868.1\|566009_566447_+\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NC_016609.1\|WP_014216796.1\|592586_592970_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381090

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014216782.1\|565686_565974_+\|PAAR-domain-containing-protein	gnl\|CDD\|269823	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	2.47374e-38
NC_016609.1\|WP_014216785.1\|570326_573053_+\|hypothetical-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	0.000359247
NC_016609.1\|WP_014216780.1\|563170_563848_+\|hypothetical-protein	gnl\|CDD\|224566	COG1652, XkdP, Uncharacterized protein containing LysM domain [Function unknown].	0.000492231
NC_016609.1\|WP_107685603.1\|579005_582743_+\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	4.09225e-33
NC_016609.1\|WP_014216794.1\|589958_590591_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	3.08644e-44
NC_016609.1\|WP_014216784.1\|566449_570289_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	0.00184983
NC_016609.1\|WP_014216798.1\|594007_596347_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|226855	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only].	6.16951e-26
NC_016609.1\|WP_014216795.1\|590676_592149_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.3003e-119
NC_016609.1\|WP_014216797.1\|592976_593729_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.37743e-10
NC_016609.1\|WP_014216781.1\|563910_565662_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	1.70782e-81
NC_016609.1\|WP_041346228.1\|585913_587308_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.81362e-13
NC_016609.1\|WP_014216786.1\|573071_577295_+\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	1.4398e-09
NC_016609.1\|WP_014216792.1\|587383_588748_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	2.261e-07
NC_016609.1\|WP_107685604.1\|584177_585446_+\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	2.74122e-39
NC_016609.1\|WP_041347868.1\|566009_566447_+\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	5.83831e-31
NC_016609.1\|WP_014216796.1\|592586_592970_+\|response-regulator-transcription-factor	gnl\|CDD\|381090	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators. The NarL family is one of the more abundant families of DNA-binding response regulators (RRs). Members of the NarL family contain a REC domain and a helix-turn-helix (HTH) DNA-binding output domain, with a majority of members containing a LuxR-type HTH domain. They function as transcriptional regulators. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.15765e-36

>NC_016609.1|WP_107685603.1|579005_582743_+|DUF4157-domain-containing-protein
MRMPEPVSMPSAREDDTLQKKEEGTVGQVTGVQHPVISRIIQCKGAMVQTKLGTPVQRSYLGDDTGSFDIYPKHLSLYPSDVLQQSGRGPPTSSIPFEQSLSTSKGGGHALPGDTRQFMERRFNADFSGVRIHTGSHAEYLSTQINAQAFAHGNDIYFNSGRYSPNTASGGLLLAHELTHTIQQGASKSHAPGNAATAIARKPIVQRSSGAEQEEAATPDAEQTLQPKNELSSWSVNSGGELAQPKEEERKEEEDKESLSQTPVIQKQYDSEEQVQRSVVDDALAYIDSVTDCISLDLDVAKACALRKAQQVALHIPGYRALRVVLGRDPITSDGVERNGRNFLEAAFDLMPGGLLLHQKLEEQHQLDAAAAWIDEQLARVENLVTGLFNDIERFWNRLGITDLGSPMDVLRNAANIVLGFINRVIDFAVEAASELLAMIKEYLLTKIVDFIKTQTTAYPLLRVILGRDPVTDEVVPTNGTTILNALLELGGEEGIQQRTQMQQTGTFQKAVDFIDEGISLFSRTYDEMVTAFHNIWNIVTINSLMDPIGTFTQIYNQFAGPVGRVLDFVLRVGAEILKFIKEVLMQRLSAWAREQRGYELVTVIIGKDPFTNAVVPRNVENLIRGFMSLMEGGREQFEQLKESGAIDRTVVKVNAAVARLNMTPAYIVQLFVDLWNSFSIHDIANPIAAFQRIIARFGEPIGRLIAFVITIVQIVIEAILIIMKFPFDLINNIIAKAMQAFEMIKRDPVGFLKNLLRAIKQGFIQFFDNILQHLLTGLVGWLTSELRDAGVPAFADTSLRGIISWVLQVLGISMEKIWQKLAAHPRIGPQRVARIRSMINTLEGIWTFIKDVQERGMAAIWDKIKEQLTNLWDTILNAVKSWIMEQIVNRMVTRLLSMLDPTGIMAVVNSTIALYNAIQSFIKYLREMLEIVNSFVEGVVDIASGNITTAANYLERTLARAVPIIIGFLANQVGLSGIGHRVGEMIGRAQEMVDQALTWLVNKAVDTAFNLIDRLMGTQQPDAPAHDPEKQAKIDAGLADIDTEEAKYLSSGKITHEQAQLVAQTVKGNHPVFTSLEAVSGQGTWDYEYAASPKAKKPGPAKALTLPSGDAEADWEKVKAGELMDVSNFDNTIGQQMNLNPDFISDRDSQGRTNRQRGAAGLTAFLSHTDFVELHHTTQSFFSILDEHSHSFHQSVVDDPDYHPMAGDAGYLSWRGEVGWYKGEVRLLGDVYNLIRQRYWRRRF
>NC_016609.1|WP_014216787.1|577294_578695_+|hypothetical-protein
MGFIGKHIILKQVIDLEYNGRTDGFDLQRAVTEWCHRDVLPHIQEQLGKLRTKGKVYKIDKLEVDVQIDASGNWMANATTQIVQQVHEQIEQEIKKSQDDSLVKPLTLPQQFVEAFIYFLQHGHLPWWSQVSTHHVWQEELENLLITGFDEKARVQLRQLLKQPDVQQRVLYQVPDEVFIKLMVQINAGIEKDVTNLINDIKHLVKDAEERKTVLILFRQSVMTFIYEVVPHQFAEHVYAHFVHQLSARGNLQHLQINKGKLRNTVLKKTIPEEQWRAKADERETDFDHPEPSNISKIKQEGIYIQNAGLVIVAPFLPVLFNKLGLIAGAELTDKRRAVYLVQYIASGRERVAEFELGLAKLLCGLDSDTPVDTNLQLTPEEKTEINDLLLSAIEYWSILKDTSPDGLQHTFLQRSGKLQYLNNEWKLQVEPKAWDVLLQHLPWSMSMIKLPWMPWMLRTEWGYGG
>NC_016609.1|WP_014216786.1|573071_577295_+|carboxypeptidase-like-regulatory-domain-containing-protein
MLPVNYVYPKFVPDQLLTSDDLNELFCYLDKQGRLTRTNLIGIGIVCGMEVQLNSAKTVVTITEGTGVTSAGYLINVPLRNFPKASLYDPVKEKYYSKFVNTAADPKTKKFDLWELKEVDDETGDINITESFLSDKVVLYFVELLEVNNKNCDPNSCDDKGIHVNVTFRPLLVKKVDAGTLIGATGSQTIDLVISLAEVRMRRFDVPNTSPVTSTNIFDAYKAVLTKPFIVSIEATLTAAWNIFKTYAQAEYQTTNPFAGLANEFEYINNGSISTHQLQHIQYIYDFFSDVLQTYDEFRRTGKHVLSICCPDCDLFPRHLLLGEAIPLAAGTASQYRQYFLYSPLFEQRDELAQLQILFKKLVLIVQQFFLPAVSTSTNSSKLDDYIRITPSILGDVDISKKAIPYYYHAVAGPYPLYKSWSLQKTLQGIPQRNLSYNAKDYNGTDDFVLNPLLYDLEPYNFLRIEGIIGKSYVKVLQNLKAMISQNRLPVDVIALNTENTNLLQGINTSNASAFSGVIDDINLEDMVCYFQDLDALYAAMKNELLCNLCKELKYYYDLGFGIQVTNSAETETKVDLLNTCSPGYKVRSGTFGYYIEQLYAKVGDSGNVTMQIIAALFNLEGTSLHGTLGSFVGYLVDYFEVPVYIIRLANTITDDLSAFEVEEYCRIHQYLSDKANAIKFAYDVLTSDTEKDNEAGLTIIKNLLRQNTADRVLSFFRIEDLFDHLDALIYSCKCAAFKAIKAEYLQRVVKLTLLRQFGYFTKQHPGIQHKAGVPMGGTFIIVYHNRPNTITKGRAFGIFILKGKVTDEEGELLHSVSITIKETGQQTKADAEGNFSIRIKTLPTVLVFRASHYEPKEVTITSDNPITVRMGIDDKEEPQNAIGGIVAGTVIADFYLPYRCCSDCPPIQYVVPEIKDTPPANQGPIADAGTDQVITLPANTVVLNGSASTDPDGSITQFQWVRLSGPNTPQIVTPNSSQSGVTGLVQGVYEFELTVTDNKGSTARDSMLVTVNPAPHVNQPPVANAGTDRTYTISTANPLVLDGSASTDPDGTIQSYKWERASGPNTPVIVAPNSVQTPVTALVPGEYEFKLTVTDNEGASASASVKITVALPENKPPVANAGIDQVITLPVNTVTLNGSSSVDPDGAIKVFSWNLKTGPNTPLFGTPDAAITQVSGLAAGSYEFELKVQDDRGATATDTVAVTVNRAPEKSCTSFHNITVLFGSLKDTDPNNFALFTRLFQFYPQVAAYFKQLDADQVLAMPIDKQIDFFATPIGGAGINVLLLQWLKQLNELILANTENLRTLALALYRILMLLSMYIACIQKEDADKAKVPMDEVFRLIEENTKAWADLNKQKPFAAPDMDIIKQIFTDLKTEEARIISNGEATIKPVYLELIRAIIKILDTIV
>NC_016609.1|WP_014216785.1|570326_573053_+|hypothetical-protein
MQTSITIQKHPELSDSSNYELLRQEGLNAIQQLASRWWTDYNIHDPGITQLELLCYALTDLGYRTSLDIKDLLAVPVNTPFDPKRQAFYTAREILTTNPWTVNDFRKLLIDIDGVKNGWLACKQCACDDLYIYANCKKSALQYEVTEHKITIKGLYDVLIEFEDEEGVGNLNSGKIKYNFGFTAGSNFATANIEMRLPSWEMIDSKAIISRYFQNDMVSWQKFLQLVHPGSTVTSIDVHFISGTAALDADITTDKLASRLRKPVYATFTVHYSPAADIASPILPAEIKFSDIPLTVWFNSDSDRKAMALDDLKTAISDASASGILSKYIDKIRRANEIIATTTQVLHQHRNLSEDYCTIKAIETEDIGVCTDMEVAPDVDIEAVLAEAYYQIDQYFSADIKFYSLTQLLAKGKAVDEIFEGPQLDNGFIEDEQLESTNLRRTLYTSDIINILMDIPGVKAVKNFALTRYNEDGLLVESQPWSLDVTYNHQPRLYVEASKFLVFKNGLPFLPDRLELADTMQVIIGTNAQPKLAVTDKDLPVPQGNYYDLTSYYPLQYSLPLTYGVGFDGLPSAASAKRRAQAKQLKAYLLFFEQMLVNYLEQLAHVKDLFAVDDTVTHSYFSHLFTNAEINGLNDIVNTSLTANVLQDLEETNTVFLDRRNRFLDHLLARFSETFSEYALMLYSYSQSKAVAQDELIKDKIAFLKDYPFMSYNKARSFNYKDPTKVCDPTNIAGLTTRIRRVLGMPDAEKIFVVEHLLLRPRIKPSTLIPKGDPLLSICIGPNCELCGEEDPYSFRLTVVLNGETGLANSGIAFRRFAEQTIRKEIPAHLAIKICWVEKAKLDEFETKYCAWLKELSKVVPDTVTLSNLLTDLLAVFTKLKNVYPAASLHDCEDGNDENRVFLNQTII
>NC_016609.1|WP_014216784.1|566449_570289_+|baseplate-J/gp47-family-protein
MSNCNDNKNPLQHNGTSQAERLLPGLQTGYVQVNEKEYADWIVFAAEFAAYLKYYDASNTEAGTWQVFFTSDISALLGTMAVQDIDGYRRQIKERFDYIKDDANAADINAIKRKLHELFSVLFSLAKALDTYLQRLPDNDPEAGNSISLKATLQNSIETRLGPAMQRLIAYHKAATTQTLLQPGDFTGWKVLSTPVVAAETIITNGLSKYWWRNGAADWNTYVSGIAAEASIFGNTAWTEYRRINHAVNHNLFASIFDLFTQNFAKLINEATSSLLTTLGDWNTHPAHYALFLAFLKLFRLAQADINTITQRHLDFYYKEVLQLLPKAAQPNKAHVLVELAKMTDEYALPGGTLLKAGKDSTGKEVLYELDKETVFNKAKVAQLKSIYKGDASGKDNHLLEAGSSTTVLNENRLFAAPVINSDDGLGAKLTSPNKEWHPYVNKHFEEGQLADIAMPNAAIGFAIASHYLYLTEGQRKITIRLAAGSDNAKLYNKHFDCYLTTEKGWLSVQMSAIAAGTMSSTAACAEFTIALAGDIPAITDYAAAVHGGTYNAAVPVLKLILRNTDDEAYEYEALKDIKITALEIKVDVGDMSSVSKTGLKQLLLSGDFGPLDAGKPFLPFGAQPKKDATFVIGNREVFSKQGATIKLNIEWANLPGSQEDIAYNTVYSSTGSPYSYNYSQSKPSPHYPTVKPQFLFDGVWQAKNTGGSAISDVNIFNGVTPGVGVFSGGQAVNDNALVSYSDMYNTYNGASSKGFIRLVLNGDFGHKKYITDLTTYLIEKSLSTYYQKTVGIEPVEPYSPTIQSLYISYSASTLLNLEDVDDTKFAARAAQFFHLYPFGEAEQHKHITGEDPFLLPRFKHEESSATTDHIGEFYIGIANLQPQQAVNILFQVMEGTADPLAIKPSAHIHWSYLSNNQWISFDKNTISDATRQLVQSGIISFVIPAIATTNNTMLPAGHIWLRAAVSQSAEAICKLITVDAQAALVTFSPNDNADDFLEKALPASTIAKLKIPDASVKKVVQPYSSFGGRPKEKEDKFYVRVSERLRHKNRAITIWDYEHLVLENFPQIYKAKCLNHTKLVENPVTHEMEYNEVAPGYVTVITIPDLQNRNDTNPLKPYTNQNTLLEIESYLKTKISCFVNLGVRNPQFEEVRLHFELRLLNGYDDFIFYKERLQQEITQFLTPWAFASDADISFGGKIYKSVLIDFIEERPYVDFITNVQLFHRIDDVTAESGDLDEIVASTARSILVSAQASKHEIVEIVVVAEEGVTECSGGKLTS
>NC_016609.1|WP_041347868.1|566009_566447_+|GPW/gp25-family-protein
MNDEFLGRGWSFPPTFNARLKEVEMVEKQEDIEQSLQVLLTTALGERVMEPKYGCNMDELVFEALNTATKTIIKDKVKTAILYFEPRIDPKKIELNTTNEPEGEVLIEIEYVVRTTNNRFNFVFPYYRNEATELNLLTTNDGVSL
>NC_016609.1|WP_014216782.1|565686_565974_+|PAAR-domain-containing-protein
MPAAARVGDMHVCPMVTGVVPHVGGPVLPAGCATVLIGGMPAARVGDMLTCTGPPDVIIAGSATVFIGGMPAARMGDNTAHGGTITLGCVTVIIG
>NC_016609.1|WP_014216781.1|563910_565662_+|type-VI-secretion-system-tip-protein-VgrG
MPNERTIPSDKAKTVVTTTLLSDGTEVTKKYQVLSITVNKEVNRIPVATLIILDGEPAKESFEISSKPEFEPGKELEIKCGYRNDEETIFKGIVIKHSIKVRKQNSVLVVECKDEAVKMTVGCKSKYFTDTKDSDVIEELINGYGLQKDVATTSVQHKQLVQYNVTDWDYILCRCDVNGLLCIPDDGTIKIGKPEFSGASSLTIQYGATVHDLDAEIDARLQYKSVKGSMWDYTNQELLSDVEATDPGVPDAGNLTPDALADVLGEAEFRLIHSGKIEEPELQALVDAKMMKHRLAKIRGRVRIDGTAAVKPGQLIELKGVGERFEGKLFVTGIRQEIEKGDWQTVIQFGVNPEWFAQTYEVQQPPAAAMLPAISGLQIGVVTQLQDDPDGEDRIKVRLPVIHDQDEGIWCRVSSLDAGDKRGMFFRPEVNDEVIVGFINNDPRHAIVLGMLNSSAKPAPLQASDDNNEKGYVSRSEMKMIFNDDKKSLQIETPAGNKLLISEDEKKIHLEDQNGNKFTMSEDGITIESVKDINLKAKGDIKAEASANVNIKGSAQTKVEGSGGAELSSGGSTTVKGATVMIN
>NC_016609.1|WP_014216780.1|563170_563848_+|hypothetical-protein
MPTGEFEKLRIISYTDPDFSDEHKGEEYVALINPESYTLETKVEFSNNQGSGTSGNQPRFTLKPPEELAFEFLFDNTGIIDGNPKDDIADDLQNFKDFLMKYEGEIHQPKFFKLVWGTALMKGICTTLNINYKLFNPDGKPIRAICKVTIRELKPEELRVIEENNQSPDLTHYRIVKKGETLPLLCYRIYGDSKYYIQVAKANKLSDFRQIKPGQQVFFPPISKS
>NC_016609.1|WP_014216779.1|562991_563168_+|hypothetical-protein
MPVEIRELVIKVTVNQPSQGQQPSAVPAMGAKADDDKEAIISQCVDEILGIIENKKER
>NC_016609.1|WP_107685604.1|584177_585446_+|ATP-binding-protein
MQTHFNQQPIDFDQWLGKIFNDRLIRADVVKHLPAAISTDEYITLLLSLVPHVQPSFFESIIADHLPNGGDFAEFGGVKGSNHRSILPTGETVQFILAGTGLGQRLQVHQLFGEEHFFYRQGILWLEPVKEGEPVMSGRIIMAQDWVDKLLLDKETAPRFGLDFPARRITTSMVWDDVVLNQQTRKHVNEISNWLQLHHLFSEDENLSRKIKPGYRVLFYGPSGTGKTLTAALLGKQFQKDVYRVDLSQVVSKYIGETEKNLESVFKKAETKNWILFFDEADALFGKRTNMQSAHDKYANQEVSYLLQRVEDYPGLLILATNFKSNLDEAFLRRFHSLIHFPMPNSAERLLLWQRSMPVSLQRDADIRLEELAKQFEVSGASILNAVQYAALQTYARNNGVICQQDLIDGVRKEYQKEDKSF
>NC_016609.1|WP_041346228.1|585913_587308_+|T9SS-type-A-sorting-domain-containing-protein
MKQIFYAFIFTCIAQTIMAQTPPATWQEHWFEHNQLLNLKFYDNDVAVYYDNDVSSSVTWPYTYMGDVWRYVKNLYGGFGTDPHLFAVYHTGKYSGGHPSTYFDASHDNRNVIDVGPGPWTSGGTGNDLDISTHEVAHIVEGASKGIKGSPAFSLWGDSKWAEIFIYDVYLGLGKTSEATRWYNLMQTSTADLPVAGTHWFRDWFYPIYHNYGGSQVLNRFFTLLAQYFPKSGSQYSRDMNWGEFVHFWSGAAGVSLKPLATTAFGWTSTFETQFNQARIDFPFAYGTGVASVYKHCNYGGYVTALGVGNYTLSQLQNMGVLNDDISSVKVNSGYQIQLFQDDNFTGTSVTLTADQSCLVANNFNDLASSLKVTAAGAAARVVTEIPTDNRLSIYPNPVTNELRFTTSQSITGSTLRILDVMGREVLQTRFITNSIDVSKLPSGVYTLVISDKEKHFTRRFVKS
>NC_016609.1|WP_014216792.1|587383_588748_+|T9SS-type-A-sorting-domain-containing-protein
MKKLIYTCLLICIIQATFANSVIYGGGPIYKNRSYSISELKNSGFTCVVVWTIHIDASGNLNFNAEFPLVQNGSYIGASTYPNFASDIASLKTGTTSVNRVEFCLAAWGSSTFANIKNLIASQGTGSTSILYKNFQAIRTAFPTVDAIGFDDETTYDVSSATAFAVMLGGLGFKVSLVPYTSSTFWTGVATNTNNQRPGTVDRVDLQCYSGGAGNNPCNWNFGSVPVYAGLWDAEKTTSQVQSQLIIWKNSCNIKGGFIWLYDDFDNTSGTAAYAAAVNNVFNGGSGTSVATFYKDCNYAGTAVGLAAGSYTLSSLQSFGIVNDDISSLQVQSGYKVTLYWDDNYAGATLVKTASDACLVDDGWNDKVSSLVIAVNAAARMESTITNQAGQQELKLFNTANLAGVPVRIYDITGRQVLQVRPQSNRIDISRLLPGVYVLEYVLQGKRVTQKFVK
>NC_016609.1|WP_014216793.1|588880_589954_+|hypothetical-protein
MAPISKGKFNNRQWLLILILFAMMSVISFYIFQHAFAYRYVQVDVLVAATSLTLFFFFILMVTMQGFKAVDIYEEQLVVKWRFASRIVDKSEIKAYGITTRKQINYIIIKTTGEDVVLPELLLNNFDDLIHQLQLWRIKQKFELPITRDARFENRGTGVILMIVGSFLFGFTIKSVISPEFSVDGSKLITLSGQLSMPPEIKMPSKGNASGSIQLYLVEYPGINFNIDGVGFNSVNVKQLQAAARGTPVELSVLKHEYAVKITKTEAPGYFETHYQWATIYTYSLTVNGESLLSVDSYNESKHSLDNSNKKWSVLIAIIALSMFTYGFILYRQRHKVPLTSANTQPPAKVNAEKVKG
>NC_016609.1|WP_014216794.1|589958_590591_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAPQSHLIPSRGAKRAHYDKELIYSIFDEALFCTISYVFENKPFSIPTAFVRRENKLYIHGSVGSHFIWELEKGIPVCISVTLLDALVVAKSAFSHSVNYRSVVLFSQGEKIEDPATKWNVLEWLTNKIVPNSWDYLRPMKENEVRKTTVLSFDIDEASAKIRSGMPNDEEEDKPLPIWSGIIPIETSRRDPVPDELSLDIPLPKHLMPA
>NC_016609.1|WP_014216795.1|590676_592149_+|PLP-dependent-aminotransferase-family-protein
MQALSTLISIEKDSLQPVYLQIANQLMVFIKDGNLQASHRLPSTRQMAEWLQVHRKTVIQAYDELLAQGWLESRTGSGTYVAKHLPEIHPRSLLNGSAKSFNPAQTAGFEFEATPHLDRPAIWSKHKYHLDDGFPDSRLAPLEELARAYRTQLLTGNPYERLGYGDTLGALWLRKVLSDYLNDTRGLKVTPENILITRGTVMGLYLCCTAFLNPGDNVVVGELNYNGANMNFLQRGANLLKIPVDENGIVVDELAAICRRQKVRMVYVTSHHFYPTTTALRADRRIELLRLAEQYGFIIFEDDYDYDFHYLSKPLLPLASADKAGMVIYCGSFTKTISPAFRVGYVVASENVICHLAKLRRIVDRQGDILLENAIAELLQNGIIQRYLRKSVRTYRQRRDVFCELLKTHLSDYVQFQVPVGGMAVWTHFDPAINLNVLTRKALQHELYFSAGFATGGTIPKLNATRLGFASSTQEELTCCVEILRKVLKA
>NC_016609.1|WP_014216796.1|592586_592970_+|response-regulator-transcription-factor
MDNAQSVTIAIVDDHMMLRQAINLRLSLLGYKVVLEAENGKDFLDRLPEMNADPDICLLDINMPIMDGFETAVELKKRWPYIKIIFFTMHNSKAYIVKAYQIGVHGFLSKDASTEEIKQALTDVMKN
>NC_016609.1|WP_014216797.1|592976_593729_-|sulfite-exporter-TauE/SafE-family-protein
MGIFAAYSTTSLILIALSAFIIGLSKAGLKGIDMLNVTIMTIVFGGKASTGIVLPLLCVADVMAVKYYHRHAQWSHVRRLMPWMVIGILVGVFVGKDLNEAIFRKVMATIIVLTVIIMLVIEFRKTTVMPNNKLFVSGMGLVSGFTTMLGNLAGAFSNIYFLAMRLPKNDFIGTGAWIFLIINWFKLPFQVFYWNNITSSSLLTDLALVPFLILGFWCGIKLVAGIKDDLYRQVVIVLTLIGAIFIFLKR
>NC_016609.1|WP_014216798.1|594007_596347_-|T9SS-type-A-sorting-domain-containing-protein
MKAILCKIPRALTGLIVFFFITIGASAQWTAQTSGTTNSLRGVYFVNATTGWAVGANGTVRKTVNAGSTWTNQSTTTTQWNSAYFNSPTVGWIAGNGGAVRKTSDGGTTWSAQTSNTTQNINSIFFFNANTGWVAANNGNLQKTTDGGGTWASLNSGISNDLFDVKFVTATTGWIVGDNGRIRKTTDGGNTWSTQTSGTTQRLLSIYFMNANTGWISGDNGVVLKTTDGGTTWSMQTTPTNDDFYSITFVNANVGIAVGQNGTIIATADGGATWGIQTSNTGSRLYGVYFVNQGLGWAVGDNGTIIKTTAAGGHTWTEQNSNSTQTLRDIFFINQTNGWLAGDNGTIRKTTNGGNTWTTVTSGTPEDLRSIFFADANTGWVVGSNGTIRKSTNGGTTWTNQTNPGSSTLRSVFFISSTTGWVAGNNGQVLTTTDGGTTWTSRNTGITNRDYYDIQFVSASTGWVVGENGTIRKSTDGGINWSAQNSTVNDDLLGVYFVDASIGYAVGDNGTIIKTTNGGATWSQLNSGTGDRLNEVYFTSAATGWAVGQGGTILYTNDGGATWSAENSATSSEIRSVHFVAGGVGWSVGSNGDVQTYIISPLPVNFTSINANSVDCSTARIQWETAGETNNNHFDVQWSTDGSNWRTAGTVKSNGNSAGNQSYSFTYNNLAHGVNYFRLMQVDNDGRFGYSKQLSVSGACDIAGSELRVYPNPARVAVTLQLSNTALVGTTARLVNLQGHVLRQFTITKMNESLQLTGLPAGTYFIITANRQSYQIIKQ
>NC_016609.1|WP_014216799.1|597107_597404_+|hypothetical-protein
MRLQTKNGYPEVVLTSKCETSFFYTTADWLRHEIGISFCNKEKQNEMIYWEFCFGEGIAVLKYDPSLGISLCPAEFGKATIEQKAAFKMLMDTIRIIG

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Crispr_ID: NC_016609_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_2

1169196-1169303

Orphan

Consensus_repeat	Method
TCACTTTGAAATCCCAGGATTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016609_2

>merge|NC_016609|2|1169196-1169303|CRISPRCasFinder
TCACTTTGAAATCCCAGGATTTTATATTGTTTTCCCAGGATTTAGCCCTGTTTTCCCAGGATTTAGCCCTGTTTTCCCAGGATTTCACTATGAAATCCCAGGATTTTA

>NC_016609|2|2|1169196-1169303|CRISPRCasFinder
TCACTTTGAAATCCCAGGATTTTA	TATTGTTTTCCCAGGATTTAGCCCTGTTTTCCCAGGATTTAGCCCTGTTTTCCCAGGATT
TCACTATGAAATCCCAGGATTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014217255.1\|1174549_1175143_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014217257.1\|1176222_1177116_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380381
NC_016609.1\|WP_014217256.1\|1175152_1176082_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NC_016609.1\|WP_041347988.1\|1158595_1159084_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NC_016609.1\|WP_041346337.1\|1157844_1158477_-\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|238836
NC_016609.1\|WP_014217258.1\|1177441_1178920_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198376
NC_016609.1\|WP_014217241.1\|1159143_1160901_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NC_016609.1\|WP_014217260.1\|1180477_1182106_+\|sodium/solute-symporter	unknown	unknown	gnl\|CDD\|271363
NC_016609.1\|WP_014217252.1\|1170915_1171476_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_016609.1\|WP_014217246.1\|1163831_1166963_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014217259.1\|1179085_1180414_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
NC_016609.1\|WP_014217247.1\|1166980_1168291_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_016609.1\|WP_014217249.1\|1168668_1169103_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_016609.1\|WP_014217243.1\|1162261_1162759_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014217254.1\|1173279_1174542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293789
NC_016609.1\|WP_014217253.1\|1171462_1173205_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|372635
NC_016609.1\|WP_014217244.1\|1162791_1163304_+\|DUF2911-domain-containing-protein	unknown	unknown	gnl\|CDD\|378565
NC_016609.1\|WP_014217251.1\|1169368_1170637_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NC_016609.1\|WP_014217242.1\|1161041_1162139_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_016609.1\|WP_014217248.1\|1168388_1168658_+\|SemiSWEET-transporter	unknown	unknown	gnl\|CDD\|226580

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014217257.1\|1176222_1177116_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	5.3321e-29
NC_016609.1\|WP_014217256.1\|1175152_1176082_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	4.99187e-115
NC_016609.1\|WP_041347988.1\|1158595_1159084_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	2.24439e-61
NC_016609.1\|WP_041346337.1\|1157844_1158477_-\|deoxynucleoside-kinase	gnl\|CDD\|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	4.55049e-47
NC_016609.1\|WP_014217258.1\|1177441_1178920_+\|carbohydrate-kinase	gnl\|CDD\|198376	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NC_016609.1\|WP_014217241.1\|1159143_1160901_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.67133e-127
NC_016609.1\|WP_014217260.1\|1180477_1182106_+\|sodium/solute-symporter	gnl\|CDD\|271363	cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain. This subfamily includes the solute-binding domain of SGLT proteins that cotransport Na+ with various solutes. Its members include: the human glucose (SGLT1, -2, -4, -5 ), chiro-inositol (SGLT5), and myo-inositol (SMIT) cotransporters. It also includes human SGLT3 which has been characterized as a glucose sensor and not a transporter. It belongs to the solute carrier 5 (SLC5) transporter family.	0
NC_016609.1\|WP_014217252.1\|1170915_1171476_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	4.44593e-36
NC_016609.1\|WP_014217246.1\|1163831_1166963_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	1.91146e-166
NC_016609.1\|WP_014217259.1\|1179085_1180414_+\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
NC_016609.1\|WP_014217247.1\|1166980_1168291_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.94421e-13
NC_016609.1\|WP_014217249.1\|1168668_1169103_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.75716e-13
NC_016609.1\|WP_014217254.1\|1173279_1174542_+\|hypothetical-protein	gnl\|CDD\|293789	sd00042, LVIVD, LVIVD repeat. LVIVD repeats are mainly found in bacterial and archaeal cell surface proteins, many of them hypothetical. Structurally, LVIVD repeats have been predicted to form a beta-propeller, with each repeat forming one four-stranded anti-parallel beta-sheet blade.	4.56144e-18
NC_016609.1\|WP_014217253.1\|1171462_1173205_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.00122851
NC_016609.1\|WP_014217244.1\|1162791_1163304_+\|DUF2911-domain-containing-protein	gnl\|CDD\|378565	pfam11138, DUF2911, Protein of unknown function (DUF2911). This bacterial family of proteins has no known function.	8.40365e-65
NC_016609.1\|WP_014217251.1\|1169368_1170637_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NC_016609.1\|WP_014217242.1\|1161041_1162139_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.77002e-17
NC_016609.1\|WP_014217248.1\|1168388_1168658_+\|SemiSWEET-transporter	gnl\|CDD\|226580	COG4095, COG4095, Uncharacterized conserved protein [Function unknown].	3.46033e-13

>NC_016609.1|WP_014217249.1|1168668_1169103_+|GNAT-family-N-acetyltransferase
MNFREASVSDIPQLSKVRLAVKENALSNPALVTEQDYVDYLSKRGKGWVCELDNHVVGFAIGDLEKHNVWALFVQPDFEGQGIGRELLIMLLDWYYSQTTDTIWLSTAPNTRAADFYKSFGWKETGKMPNGELKFELSADDWGV
>NC_016609.1|WP_014217248.1|1168388_1168658_+|SemiSWEET-transporter
MTMYTIGLTAALLTTAAYVPQAYKTIKTRSAGDLSIVTFSMLFLGTILWFVYGLYIHDTPIMLANGVTATLSGIIFFLKIGSFKKRRRR
>NC_016609.1|WP_014217247.1|1166980_1168291_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKLISIKYTTCFAMAAVMLLAVACKKEYTDPNTANSDQVVKSAVGLTGVVIGIQKNYTSTRAGAVYNLITTDGFLTKQLLIVNQGNTAEYQFYLGGNQVFNTNSIVISFWTTCNKVIYDANTVLTNAPQLGDKGYASGLIAYASIFKALAIADLSMFWEKVPDTTGINIPVNFIANTEGYNKALNIINNALNTVAANPISASFQSNIPAGIDIVNTLHALKARFSLYTGNYAQALAEANAVDLTKKSTFNYDLQNLNPIFETATSTNNVYQPLDSTMGLPPALAPNLADKREPFYISISASAPRFRINGFYATSTQPIPVYLPGEMILTKSEAYARMASPDLVNAQIQLNNVITKQPASDPFGVGAGLPADNTPYNQAQLLDQIYRHRAIELYMSGLRITDQRRFNRPTAERTRNYLPYPNVERNSNPNTPDDPAF
>NC_016609.1|WP_014217246.1|1163831_1166963_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MTQFSSLSSRSVKAVGLLLFCQLIVSLTFAQVRISGKVTGAGNQPLTGISVTVKNTTFGSATDPSGNYTINGALKPGSYTVEFSGVGFKKSSQSLQIGGGESYTVNVTLAEDALGLEEVVVTGTSEGTTRKQIGSYISTIKADELNKGATSNVLASLQGKTAGAQIIQNSGDPAGGLSVRLRGVSSLNGSSEPLYIVDGVIINNATNRVTNTQSGYDGGNFVGTVGQSRIVDINPADIDHIEVLNGAAASATYGSRANSGVIQIFTKRGSTGAPIVNFSTSIMVNHLRKKIDVNQAPVKFGGPTDGPGALTQDLISPVGTPPALPTTTTPVTRYDYQDYIFQTGLGTDNNVSVSGGKDKTKYFTSASYFYNEGIIKHTDFKRFSFRTNLDQELTSWANMSVGLNYINSAADEKPDGNQFFSPMNSVTILGNFHNIWQRDALGNLMAVGERGRVNPVSVIEDFKQRQETNRLIASAKLKVKPAKGLSFDYTLGIDNYSQRGTTYMPPFAYNASTAFWGGGPSLDPALNGYASNGANTFFQINHEVNGTYQVNITDDWASTTQVGYSAQYEKNNLSIVQGRGLTPFVQTANSASTALPSTDVRSEFSISGFYLQQNFKFKDQLFLTGAVRVDESSVFSASERSQVYAKASGSYLLSGTEFWDKLSIAKWWNVAKLRLAYGQSGNMTGIGAYDRFNNFTTSTFLGRTAMYTGARLSNTSLRPERQQETEMGTDLSFLNSRVGLQFNYYIKKVSNLLIQRNIAPTNGYSSLLDNYGSLENKGFEIVLTGTPVKNKDLTWDVTAIYNHNRNKAVNVGQAASFSTNAGAPIWLIEGQPVGVFYGSFFAKDANGGQIKNPAGFPLTERGVQNSTLSYTTQRDANGLPTGNALLRVIGNPNPDYTASLVNEVSYKKFGLRVQFDAVQGLNVWNADFRTRQGVGNGKVAEQEDLGLLPRGYVNSVYQIEEWRVDDGSFVKLREVSLSYRMGKVKIFNDLTFSLSGRNLISWDNYKGYDPEVNSGGQSTLLRAIDFGTVPIPRTFSFNIAAKF
>NC_016609.1|WP_014217244.1|1162791_1163304_+|DUF2911-domain-containing-protein
MKKLLLLSAIALVAIGVRAQQGDKSQRPSPPAKVSETTSKGVTISIDYSQPAVKGRTIGNDIAPYGKVWRTGANEATVFEVNKDVKVEGKALPAGKYGLYSIPGKDEWVIIFNKTWKQWGTNYTEADDALRVKVKPGKAPSFTERMTFTVDKSGKVSLLWGNDEVDFKVQ
>NC_016609.1|WP_014217243.1|1162261_1162759_+|hypothetical-protein
MRIVKLAIISLVVLFLVTYFFSLIIPSTIRVSRAMNIAVSKDSLRAMVTDLRQWHLWNELVENPELTHAQFSQNEFSSDQLQVTSLPSTGDTLKTAWRQQKNAQVLASGFTWEGNDDQLVIQWYFDIKLHWYPWEKFGSIVFDKQMGPPMEKSLGNLKKLLERNP
>NC_016609.1|WP_014217242.1|1161041_1162139_+|ABC-transporter-permease
MSGQYNQWTAMWAICRATLRAIFKSPQAIFFSLFFPIVLIMVFGALTGGGGKAYDVAFDAKSDTTNNIYYILRSINAFDVHRGSEAELMDQLKKGRITALIDIRKLPANTAGTQYDIHLKTTSASQKDLPAVQALLKSFLDEMTANTVTNKIATVSVEEIKGRPYHMIDFYLPGMLGFSLIGSAVFGVAFVFFTLRETLVLKRMFATPVRKTFIVLGESLARVAFQLSTSIILILFGTFFYHFTLAHGFVTFLELLVLSFLGVTVFMGFGFIISSVAKNQNVIPIYANLFMFPQYFLSGTFFPKGLLPESMQAIINYLPLTALNDAMRKVSFEGMHLLGVGKEITILIVWCLLAYSILIRIFRWE
>NC_016609.1|WP_014217241.1|1159143_1160901_+|signal-peptide-peptidase-SppA
MKSFFKIFLASLLAFFVLCVILFFVFVGLITGLTSSERVTTGSKAVLVLDLSRTYKEIGEENPLSRFTDKEDGDIPSLYDVMRMIRYAKSDSAVKGIYLKCGSNGNGMGASQEIRNALIDFKSTGKFVYAYGDVITQGGYSVGNIADKIYCNPKGGVDWRGFAIQLAFLKGLLQKLEIEPQIFYAGKFKSATEPFRETQMTEANRLQLSVMLGDFYNRLLLQTAEARKLDTATLHQYANDYKIRFAADAVTYKLIDGLKYDDEVKNEIATRLGRVKLDKINFITMQKYAKAVDFKRDGKEKIAVIYAQGDIIDGKGDRDMIGSVTYRELFRKARLDDNIKAIVVRINSGGGSALASENMWRELTLARKGGKPVVVSFGDVAASGAYYLSCNADSIFAQTNTITGSIGVFTMLPNLEKFFNNKLGVTFDGVKTAPQADMLVATKPLTPAQRTWLQNSVDSTYYTFKQRVAEGRRKDISYIDSIGQGRVWSGSRALELGLVDRLGGLDDAIACAARMAKISDYRLREYPEPHNFLEVLLGNAEKDNTQSAIQKEFGEEGMKTWQTMKRVKTMMGVTQARIPFEIAIQ
>NC_016609.1|WP_041347988.1|1158595_1159084_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNKVFLLIGGNMGDRLQNLHQAIALLAATCGPVTQQSAVYETAAWGKTDQAAFLNQALLLHTLLTPQELITTILSVEEQLGRRRMEKNGPRVIDIDIIFYNDLVMHEPHLTIPHPQLQNRRFVLIPLIEIAPDLVHPVLHKTLIELLSECRDDLAVNKLAGS
>NC_016609.1|WP_041346337.1|1157844_1158477_-|deoxynucleoside-kinase
MKYHFITIEGNIGAGKTTLANMLSRHYNARLILEEFADNPFLPKFYENPQQYAFPLELFFMAERYKQLKELIHTSDMFQRTTITDYLFTKCLLFAKINLPEEEYRLYQKLFEIIHQQLVQPELLIYLHAPVDRLQANIKKRNRSYEQHIPDEYLLNIQQTYTHYIKQHNIKTLFVDAGNADFLGNPQHLQVIIDALDQEYEQGQHYFTLP
>NC_016609.1|WP_014217251.1|1169368_1170637_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MATLIERDKKAVWHPYTPQKSMPEPIPVAKGDGTYIIDENGKAYIDAISSWWVTIHGHANPYIAEKIYEQAKNLEQVIFAGFTHEPAVRLAERLLEILPGDFAKIFYSDNGSTAVEVGVKMALQYWWNKGNGKRNKILALNHSYHGDTFGTMSLSNRSVFTLAFQDKLFDVIFTDAPTKDSPLYDGPWDEIACFIYEPLLQGVGSMNIYDASALNKLLQQCHAQDVICIADEVMTGFGRTGKLFSSLYAEEKPDIICLSKGITGGTMALGVTACTDKIHAAYVDDDRTKTFFHGHSFTANPLACAAALASMDLLLKPDCQQQIARISEQQQQFVLQLSTDKRFETQVKNVRSIGTIMAFEIESGRDGYLNTIGMDVTRKALAQGVYLRPLGNTVYIMPPFCITAEQLDKVHNAIINILATIE
>NC_016609.1|WP_014217252.1|1170915_1171476_+|RNA-polymerase-sigma-factor
MDYNRLVKDCLKGLPEAQRQLYEHFAESMLGVCYRYTKSIADAEDVLQEGFIKIFRNLHQFKFEGELGGWIRRIMVNTALNYLKKNSRYQTDLSFPETSLHPVSDDNPEVTLQAKDLAELIRQLPAGYQTVFNLHAVEGFSHVEIGKMLGINEGTSRSQYARARALLITWLKKTSVETKKESYVRP
>NC_016609.1|WP_014217253.1|1171462_1173205_+|outer-membrane-beta-barrel-protein
MSDHEFEKQVHQKLQELKLRPSDGVWMEVEKSIRQGNNRRRFMWWWMAALFVGLTASGIVLYNYTTETHNATAAVARATATARSTAKPAETAPHSTNQIITKLPVTDNSTTGEEKAGNHSIVQNNKQEPANESPVVAPVTSKNNQPVITAAENSTAVKTTINKNKKPLQSPLAYNPGNTNPGEPINTTKLTHEKQRTAKKKGRGEEIVIAAMPVQPHDGGAGSETIATVETKKTEPDVLNSIMPVRVNNPDSAITTNKAATTPFKTMALSMMVADPEIGLAAAPIIRKKPVLWHWGVSADAGYSRIAESKLFQLKGLLGKDKYYAEDLSARSSATPSTSNNNTVNYNSSANSQLVNWSAYTAPPKKASPIQADKSFSLGVFVQRTVSPRLKLTLGLEYSYISVHTQVGQKVVAPNNPIVVNYGTSQAALVKEYYKYPGSDTAQSISAAAYAQGLTYSQRYTYRFHYLEIPLTVSWQINKGRKLPPFQLEGGFSMARLLSVDALHYEGIKGVYYKDNDLFNKTQFNFVAGLSVGLLQQSKHPLWIGPNLRYALNGLVNKEVSTGQYAWSAGIGIKVLLGKL
>NC_016609.1|WP_014217254.1|1173279_1174542_+|hypothetical-protein
MKRHLMSVLQLGITVILTASLSGCDKEKVTRSYTWYTPVYRALPEVRAEMKSSPARAVKNPGKIYIYQNYIFLNEFDEGIHIFDNTNPASPRNIGFIPIPGTEELAVRNNVLFADSYSDLVSFDISDPKAVTAIRFTENAFPYRNVYYSYNSYNGTRPPVDSIKVTVSWIRHDTTVTYSSNPNVYYDFVTLAGSSAQPSKSSTGQGGSTARFTLINDYLYTVSTSDLYTYNVTNPADPKYVNKTTIGNWTIETIYPFKNKLFIGSTQGMYIYDVSTPANPVQQGQFTHVRSCDPVIADESRAWVTLRTGSSCGGNVNRLEVVNIENLASPSLVKQYDMTNPYGLGKEGNTLFICDGKDGIKVYDAADANNLKLIKKIDGMEPYDVIASKNIALVVAKDGLYQFDYSNVNNIRLLSKIGIE
>NC_016609.1|WP_014217255.1|1174549_1175143_+|hypothetical-protein
MQKISLLLWIVLSGSILRSDAQVKNQEQPQKGCSCSFSSINQTGLLYGTKGAYYLLETINGIKYKTWFTGIGVGVDPYFRTGYPVFFDLRKDLINKNSSPFLYADVGVHIVKDKNDQVNQWYENIYSNGAYTNAGIGYKFAIFSKFKGVISAGYSYKNVVRKNVYLGNNCTSGRCYDNYDTYKDYLHRGTIKLGFQF
>NC_016609.1|WP_014217256.1|1175152_1176082_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MNFKLQHTQQIKSFVRELGFDFCGIARAQQLDEEARRLEQWLNKGLHGNMQYMENYFDLRIDPTKLVPGAKSVITVLLNYFPQQTQQSDTPNISKYAYGNDYHEVIKKKLHTLMALINEHIGEVQGRGFVDSAPVLERSWAHRSGLGWIGKNGNLINKQQGSFFFIATLIVDIELEYDDPIAKDYCGSCRKCIEACPTGAITEGKVINGSQCISYYTIELKDLLLPDDKKGQFADWMFGCDVCQDVCPWNRFAKPTSEAGFKPIPEILNFTTKEWESLTEDAFKQIFRHSPLKRAKFQGIQRNVKFLKG
>NC_016609.1|WP_014217257.1|1176222_1177116_-|helix-turn-helix-domain-containing-protein
MKPLVEKLPLSQNTSFVARTYRTPHFEVPWHQHIEYELILFLEGEGSAFIGNYIGEFKTDDIFFLGSNLPHTFQKAHKELITAAVVVQFTDDFWGPGFMQLPESKHILKLFSVAMQGLKIQGATRQQLKPLLIELEHLQGFARIIRLCECLQIIAGAHDYETVSTQEVKTFQAKNKDRIDRIFQFTIDNFQESIALCDVAVTAGMSIPAFCSYFKKCTKKTYVDFLNEVRIGHACKLLIDTQKTVLEISIESGFNTLANFNKQFLKLKQLTPSGFRKQFRIQEPSAYLPDEYRTLNA
>NC_016609.1|WP_014217258.1|1177441_1178920_+|carbohydrate-kinase
MLLLGIDVGTSSIKVSVVDAQTQQCKASAQYPETESPIISPQPGWAEQSPEMWWEHVQQAIKKAHATNNYNPADIGAIGISYQMHGLVMVDSNQQVLRNSIIWCDSRAVEIGEKAFKAIGKKQSLSHLLNSPGNFTASKLAWVKEEEPDTYKKAKRIMLPGDFIAMKMTGEITTSISALSEGIFWDFKKDRISKDVMEHYGFDDELIPEIQDVFSDHGRLKESIAASLSLKAGIPVTYKAGDQPNNALSLNVLEPGEVAATAGTSGVIYGVSDELTYDPESRVNTFAHVNYTNDEKRLGVLLCINGTGILNRWVKNIFTPAISYSQMNSEASKVPIGADGLRVLPFGNGAERMLNNQIIGVHFHHIDLNLHTQAHLFRAAQEGIACAFRYGLDIMRENGMNPQVIRAGKANLFLSDLFVEAFVNTTHVPVELYNCDGSVGAAIGAGIGAGVYKTPKEAFTQVKPLTVIEPDKKKEYKVVYEEWKGLLDNILK
>NC_016609.1|WP_014217259.1|1179085_1180414_+|xylose-isomerase
MKIITGEKEFFKGIGQIKYEGVESDNPLAFKWYDENRVVAGKTMKEHLRFAVCYWHTFCNTGADPFGPGTKHFAWDANTDAVARAKDKMDAAFEFITKLGVPYYCFHDIDLVDEGANIKEYESRLQTIVDYAKQKQAASGVKLLWGTANVFSNPRYMNGASTNPDFAAVAYAGTQVKNALDATIALGGENYVFWGGREGYMSLLNTNMKRELDHLAQFLTMARDYARKQGFKGVFFIEPKPCEPTKHQYDYDSATVIGFLRHYGLDKDFKLNIEVNHATLAGHTFQHELQVAADAGMLGSIDANRGDDQNGWDTDQFPVDLNELVESMLIILEAKGFAGGGINFDAKTRRNSTDLEDIFMAHIGGMDTFARALVIADKVMQKSPYLKFRKDRYASFDSGKGKEFETGALKLEDLREFALSNGEPKQTSGKQEWLENIINQYI
>NC_016609.1|WP_014217260.1|1180477_1182106_+|sodium/solute-symporter
MHFLGPIDWLFVGLYLAVIAAISIWSIKKAKDSPSDYFLANRNLGWFVIGASILASNVGSEHIVGLAGTAASTGVVMGHYELHSWIILTLGWVFVPFYMRSMVYTMPEFLERRFNAKARWLLSIIQLISYVIAKAAVTIYAGALVFNSLLGVDFWTGAIILVVVTGVYTIFGGLHAVMYTEAIQAIVLLAGSAVLLFIGLDKVGGWGTLMHSLPKEKLNMFQPLSNPDFPWAGILFASPIVGLWYWCTDQHIVQRCLAARNEKEARRGTIFAAYLKLMPFFIFMIPGLIAYTLHQQGKINMTDTDVAFPTLVKEIMPVGLRGLLAGGLLAALMSSLASVYNACSTLFTMDIYKKIKPEASNHELVRVGRIATGIVVLLGMIWIPLMKNISKGLYGYLQSVQSYLAPPIAAAFLLGVFSKRINAKGAYTAMVVGFIIGILKLIFELLKGHLGAGLLYDFATMNFLYFCIALFVFSVVLMVVISLATPAPDEAHLKGLTFATTVAEDKKASRASWSQKDVLLTLLVLVFIIAIFIYFSPLGIAK

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Crispr_ID: NC_016609_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_3

1877343-1877462

Orphan

Consensus_repeat	Method
GCCATCGCCATCGGTGTCGGGGATGGGGCAGCC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_016609_3

>merge|NC_016609|3|1877343-1877462|CRISPRCasFinder
GCCATCGCCATCGGTGTCGGGGATGGGGCAGCCGTTAAATTCCGCCGGGCCTGCTTTATCAGGACACAGATCCACTTCATCGTTCAGGCCATCGCCATCGGTATCGGGGATGGGGCAGCC

>NC_016609|3|3|1877343-1877462|CRISPRCasFinder
GCCATCGCCATCGGTGTCGGGGATGGGGCAGCC	GTTAAATTCCGCCGGGCCTGCTTTATCAGGACACAGATCCACTTCATCGTTCAG
GCCATCGCCATCGGTATCGGGGATGGGGCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014217808.1\|1888192_1888537_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NC_016609.1\|WP_014217806.1\|1886555_1887044_-\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|131254
NC_016609.1\|WP_014217804.1\|1883154_1885575_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|224061
NC_016609.1\|WP_014217807.1\|1887030_1888056_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_016609.1\|WP_041348166.1\|1868587_1868866_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
NC_016609.1\|WP_041348176.1\|1878592_1880116_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
NC_016609.1\|WP_014217802.1\|1881227_1882274_-\|agmatinase-family-protein	unknown	unknown	gnl\|CDD\|212539
NC_016609.1\|WP_014217797.1\|1874181_1874796_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NC_016609.1\|WP_014217794.1\|1871376_1872270_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381318
NC_016609.1\|WP_014217805.1\|1885868_1886510_+\|DUF4294-domain-containing-protein	unknown	unknown	gnl\|CDD\|379485
NC_016609.1\|WP_014217790.1\|1867947_1868211_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014217809.1\|1888600_1889452_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NC_016609.1\|WP_014217798.1\|1874937_1876650_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173809
NC_016609.1\|WP_041346478.1\|1880558_1881131_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014217793.1\|1870345_1871269_+\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|238084
NC_016609.1\|WP_014217789.1\|1867517_1867802_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014217803.1\|1882722_1883145_+\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|376989
NC_016609.1\|WP_014217792.1\|1868976_1870197_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_016609.1\|WP_014217796.1\|1873230_1873995_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|378484
NC_016609.1\|WP_014217795.1\|1872482_1873139_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014217808.1\|1888192_1888537_-\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	3.10692e-71
NC_016609.1\|WP_014217806.1\|1886555_1887044_-\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	gnl\|CDD\|131254	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	4.42745e-70
NC_016609.1\|WP_014217807.1\|1887030_1888056_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	7.79669e-20
NC_016609.1\|WP_041348166.1\|1868587_1868866_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	5.91597e-15
NC_016609.1\|WP_041348176.1\|1878592_1880116_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
NC_016609.1\|WP_014217802.1\|1881227_1882274_-\|agmatinase-family-protein	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	1.54834e-88
NC_016609.1\|WP_014217797.1\|1874181_1874796_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	2.12627e-18
NC_016609.1\|WP_014217794.1\|1871376_1872270_+\|aldo/keto-reductase	gnl\|CDD\|381318	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins. Bacillus subtilis YcsN and Escherichia coli YdhF are prototypes of this family. They are uncharacterized aldo/keto reductase family oxidoreductases.	6.32439e-121
NC_016609.1\|WP_014217805.1\|1885868_1886510_+\|DUF4294-domain-containing-protein	gnl\|CDD\|379485	pfam14127, DUF4294, Domain of unknown function (DUF4294). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 192 and 226 amino acids in length.	4.1562e-64
NC_016609.1\|WP_014217804.1\|1883154_1885575_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|224061	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	5.56735e-70
NC_016609.1\|WP_014217798.1\|1874937_1876650_-\|S8-family-serine-peptidase	gnl\|CDD\|173809	cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.97286e-105
NC_016609.1\|WP_014217809.1\|1888600_1889452_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	3.37839e-126
NC_016609.1\|WP_014217793.1\|1870345_1871269_+\|DNRLRE-domain-containing-protein	gnl\|CDD\|238084	cd00146, PKD, polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.	0.00305835
NC_016609.1\|WP_014217803.1\|1882722_1883145_+\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|376989	pfam03100, CcmE, CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.	4.85609e-06
NC_016609.1\|WP_014217792.1\|1868976_1870197_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.78267e-79
NC_016609.1\|WP_014217796.1\|1873230_1873995_+\|DUF2520-domain-containing-protein	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	1.11374e-33
NC_016609.1\|WP_014217795.1\|1872482_1873139_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	7.12213e-83

>NC_016609.1|WP_014217798.1|1874937_1876650_-|S8-family-serine-peptidase
MNKLVKVAGLLTAFVIAEQTSFAQQEKTFKTGAVPNGWHLLDNTKDGYYGISVNKAYDFIHSKNLKGKTVLVAIIDSGIDTLHEDLKDILWVNPKEIPGNGIDDDGNGYVDDIHGWNFIGGKDGKNVKQDSYEGARVYHMFKSKYADQKVDTTKMSRDEKDQYKMWLKAKSKVEGDGGDEQIDVVRLRKYLTTAQKSDSIIRAGMGKDTYTGNQLDTFKTESPEQSSAKGALMFLFKNNQMMETTNKEFLDGFDEFVSGEERKEEAKTKAPEDYRGNVTHDNEQDINDRSYGNADVMASTPFHGTHVAGIIGAERNNGKGMDGVADNVRIMMIRAVPDGDEHDKDIALAIRYAADNGAKVVNMSFGKDFSPQKKWIEDAVRYAESKGVLLVHAAGNDAKNVDTADNFPNPVMKDTHKKASNWITVGASGDPNSGGYTASFSNYGKKQVDVFAPGVKIYSSIPGGNTYGIAQGTSMACPVVVGTAALLLEYFPYLTPQQLKYCIMKSAQNPGVKVSKPGTDEVVNMSELCVSGGVINAYEAAKVAATLNPTGKKVAPKTVSPKPTMKNKKG
>NC_016609.1|WP_014217797.1|1874181_1874796_-|DinB-family-protein
MVTRKDIAVPDFFKTYINALQEDNLQEALANNTRRFRKLLKQIPHKKINFAYAEGKWTIKELLQHIIDSERVFIYRALTFARHDPALLPGFDENNWAIAAKAPKRKWNELVEEFKALRTANELFLNSLDDDQLLQTGSANNNQISVAGLAFVCAGHVAHHIRIIRERYLGDQPARKEKEKVKAKIIKKKKKKAGAKTKVKQHRA
>NC_016609.1|WP_014217796.1|1873230_1873995_+|DUF2520-domain-containing-protein
MRIVIIGTGNVATILGKRFLAADHEIVQVCGRNQLHAEELADALSASFTTGLQHVNSNADLYVLAVSDTAVAAVASQLQLNNKLVVHTAGAVSKNVLSACSKNYGVLYPLQSLRSELNELPDIPFLVDGNTEDDLALITEFASSISNQVQQAGDEERLKLHIAAVMVSNFTNHLYALAKAYCLQEHVDFNMLLPLITSVAERLHDYEPAAVQTGPAVRNDEATIQKHLALLQPHPALQSLYYMFTESIKKMHKQ
>NC_016609.1|WP_014217795.1|1872482_1873139_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MRTFEDTYRHKGLRKQLVDQLKQKGITDERVLTAILQIPRHYFLDSALDRVAYEDRAFPIAEGQTISQPYTVAYQTQLLEVKPYEKVLEIGTGSGYQAIVLGEMQAQVYTIERQKKLYEEHRGFVLRSKYPNIKYFYGDGYEGLPTYAPFDKVIVTAAAPYIPPKLIDQLKPGGKMVIPVGEGNIQRMLRLTKQRDGSVTEELFDNFSFVPMLEGKNS
>NC_016609.1|WP_014217794.1|1871376_1872270_+|aldo/keto-reductase
MEKIYLSDSGPKVSPAIYGFYRWNEVTGDAAQTMEKIVNLCLELGINTFDHADMYGNYQCEELFGKLINRKSFKREDIVLFSKCGFVSPNAEEPEVRIKHYNTSAAHILKSVDNSLRKLRTDYIDIFLLNHLDPLSNVEETALALQRLKESGKVKNIGVMNFTVFQHQLLASLLRTPIVTNHIELNLLNTSALDNGQLDYIKQRYMRPLASAPLAAGRIANGTDAQAVKVRSTLEVLGKKYNADIESLAVAWLVKLGALPLIGTINEQRIRNIANAFSIDLDHQDWYELYTASRGEL
>NC_016609.1|WP_014217793.1|1870345_1871269_+|DNRLRE-domain-containing-protein
MTLNRLALAALALVLTVASCKKDNDFVENKVPVADAGPSATVSTTDSAVVTGKGTDADGNVVAYLWSQVSGPVNANIVNPGSAATTIKFNTSGSYVFQLMVTDNKGATGVDTMTIVYNGPKTLVLQPNNNAGEYQLVNLLGNDASGIAGNSIDADAWTSGGGTYNLRGILKFDLSSIPASATVKSATLYLYSAINPATGNMVDANYGSANTALLQQITAPWTTSSINWFNPPAVNTGTQITVAQAPQGQLDLALDVKSHVATMVSNNANYGWMLRLQTENYYNSRIFVSSRNQAYPDKHPKLVVVYQ
>NC_016609.1|WP_014217792.1|1868976_1870197_+|MFS-transporter
MKKSIYIMALGAFGIITTEFGIIGIMPAIAKHFQVSIDTAGWLLSGFALTIALTGPFSVLLTSKINRKWMMCLVLLTFVLSNILSAISPNFTVLMIARILPAFLHPVFWAVATVAASKQVEPKDAPKAVSVVLAGLSVATVLGVPITTYVADLINWQASFIVSGIINLIAFAALLAFVPSMPVVEKQSVKSQLVILKKGQMWVNLVATMIMIAGIFATYSYLAEYLGKISQMNGKEISMMLLLFGATGIAGNWVTGLALSKNVLLTTRFFLLSLIAVHMLAYTFGGIFVPMTAIIGIWGFIHTGGFLIGQTRSTSEAPEAPELAASLMVSFGNAGVTLGTFLGGLIITRFGIHEVIWISIGLLVVALALTWVFVGQKPVTVPVETMEREKAIRTLEADLVEEAMFV
>NC_016609.1|WP_041348166.1|1868587_1868866_+|helix-turn-helix-transcriptional-regulator
MDSKKFEKVSRALSDPHRLRILEKFRKKCDDTLYCSEIHDFLDLAQPSVSHHLKQLVEAELLIPEKEGRNLKYNLNQEVLNDYIAFLTAFKA
>NC_016609.1|WP_014217790.1|1867947_1868211_+|hypothetical-protein
MDKRYESIRFMIETGHITEFRQIFNYMPKSPLGKHLHTNNPRITRLTTEVDDLTVQEIVSISSFFGVDYMKIIHLVFTQYLKDRKIK
>NC_016609.1|WP_014217789.1|1867517_1867802_+|hypothetical-protein
MDKDNRYNVARIFIEKGEIKTIEQIFDYIPKSVVSRELKTNNNRFTRLINEPLEFKLIELSKIARAIGVETKVLVNLALKDENKRTRPGKKAAR
>NC_016609.1|WP_041348176.1|1878592_1880116_-|aldehyde-dehydrogenase-family-protein
MDFLAALKIREQNSGVSTGIGSLPAHGEQIASHSPVDGKLIATVQAADKNDYETVIAKAQSAFLEWRTWPAPKRGEIVRQVGEALRANKEALGKLVSYEMGKSLQEGYGEVQEMIDICDFAVGLSRQLYGLSMHSERPAHRMYEQWHPLGIVGIISAFNFPVAVWSWNSMLAWICGNVCIWKPSEKTPLCALACHNVIADVLKRNNVPDGVNGLVIGGRAVGEWMSADTRVPLVSATGSTRMGKAVGATVGARLGRALLELGGNNAIIISQHADLDIAIRGSVFGAVGTAGQRCTTTRRLIIHETVYDSIKTKLVAAYKQLSIGDPLDENNHVGPLIDKDAVVGYQKALDACKKEGGSFIVEGGVLEGKGYESGCYVKPCIAEVEPHFNIVQQETFAPILYLMKYNTIDEAIAIQNGVPQGLSSSIMTLNLREAEQFLSANGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKAYMRRQTNTINYSTQLPLAQGIKFHV
>NC_016609.1|WP_041346478.1|1880558_1881131_-|hypothetical-protein
MVYQYVVTLKNQNNRYIDILGLLLSIFSIVCFTLELLRSPNVSLAYLLGAVAVLGFVVFNLTQQAKKRKVYYSRALLIAGLVWMKMPYFSWLLFVFVMLALLEYQAKYATEIGFSDNEVVINTLFKKRYLWTQFSNIVLRDGLITLDFSNNHILQREVEDDEDDDADEDEFNEYCHHQLVKHHNEAPGGS
>NC_016609.1|WP_014217802.1|1881227_1882274_-|agmatinase-family-protein
MTDLSHFDPNAASNPNNNIFGLPFTEEDARLVILPVPWEVTVSYNAGTARAADHIFKASMHVDLFDPETKDSWKQGFYMRPPDKKVLLKSDYLRKEAELYIDYICHGEVLEKNLFMCKSLRDINEGGGYLNKWVYEQCKQLLNRGKLVSILGGDHSVVLGFFKAMAEQHGEFGVLQIDAHCDLRASYELFTYSHASVMYNALKEIPTLTHLVQIGARDYCQEEWEYIQNNKDRVIPYFDKDIKERQFEGETWKQITDEIVGKLPEKVLVSFDIDGLDPKLCPNTGTPVQGGFETEQIFYLLKKIVQSGRKFIGFDLVEIGVGDNNEWDANVGAHILWRLANLLVASNQ
>NC_016609.1|WP_014217803.1|1882722_1883145_+|cytochrome-c-maturation-protein-CcmE
MKKIHIVILVGIAVCIMILLSFMADLSTYETLASARQKEGKTVTVIAKLDKSAAVPVEYDPAKNPNLTQFYVVDSLGNRAQVRYYFEKPMDMEKSDRIVLKGKMQGNVFEITRKDGILIKCPSKYKDDPKAAANNLSAQN
>NC_016609.1|WP_014217804.1|1883154_1885575_+|cytochrome-c-biogenesis-protein-CcsA
MKYIGEHLLPGQLGQFLVVLSLVASLVACIAYFKSSNASLEPEHESWKKLARIAFLVNAGSVLATFSIIFYIIANHYHEYFYAWNHSDITLNPKYLLSSIWEGQEGAFLLWTLWQSVLGIVLIATAKKWEAPVMTVMSFAQFCLATLIIGVYVFDVKVGSSPFLLTRHQFQDAPIFQGDNYLSLPKIHNGNGLNQLLQNYWMVIHPPVLFMGYASTIVPFAYAIAGMWKKDFGSWTKQALPWSLFSGGIFGLGIMMGAAWAYESLTFGGYWAWDPVENASLVPWLVMVAGIHTQVIYNSTGHSLRATNFFFVMSFLLVLYSTYLTRSGDLQDTSVHAFVDSGLNWQMRIWVLIFAIGSLSLFAARFKKIPHIAKEEEFSSREFWMFIGSLVLFLSSMAIIVPTSFPIFNKLFGTNLVIGEDKEFPYNRIQVFVAVVIGVLTAISQYLKYKNTSKAYFTRKLLWATVISVLVSASISYFGHINYNKYGYGFLAAIHLALFAAVYAVIANAGYIFTGLNGKLKAAGASVAHLGFGLLMVGILISSSKKEILSVNTFNPLNFGPEKPKEGFENLTLFRGIKTDMGSYWATYVKDSVSTKKTVTYFRVDMERKDGKDKFSLYPDLIKNTKGQEGMSNNPDSRHYLHKDIFSYVNHASSVQEGADTAQFRNHVVKTGDTIFYSEGYMILDSVTVNPHDEKHRFTSKDTALMANLTVITKEQQKLTAKPVFYVRNNGAQYMLDTLYSEGLAIGFTRVTDDKHLEISVKESSRLAPFLALKVLQFPFINLVWLGTVLMIIGFVISMIRRIKLL
>NC_016609.1|WP_014217805.1|1885868_1886510_+|DUF4294-domain-containing-protein
MTEKRKIFRILFAVWAIVAVSIGSARAQTAPDTIPLPQLGPNDTIPVPAQIIGNEYVPAQTLEWTWVQAPYPKHLLKKRQEWTRLRNAVYVCYPYARRAGDIMNDINAHIAHMPDGDKKTYIKSREKELKKQFAEPLSQLSIYQGKVLMKLINRQTGNNCYEIIKEYKGGFTARTWQTVAFFFGSNLKQPYDAQGDEREIESIVQEVERMHRM
>NC_016609.1|WP_014217806.1|1886555_1887044_-|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase
MRKADIISTRVCTLNEAKHRIAQWRVTGKTVAFTNGVFDILHRGHIFSLSQAAVEADYLIVGLNSDASTKRLKGDSRPVNDEQSRALVLAALLMVDMVVIFEEDTPLNLITTLQPDVLVKGGDYTLEQIVGAKEVMESGGKVIINSIVEGFSTTGIIARMSS
>NC_016609.1|WP_014217807.1|1887030_1888056_-|flippase-like-domain-containing-protein
MNKKILSILQYILFLGLSIFLVWWSVRKITDKGWDDIKNAFRNANYLLIIPVMITLLLSHYSRALRWKILMEPMGYKPRLANVYMSVLIGYMANLAVPRLGEVLKCTILARYEKVPADKLVGTIVAERAFDVLCLVLVILITFFTQADLIGGYLNDTLNTIVRSKTSSLSATKIIILVGVLLLGITAVVIVFKKFSHITFIQKIRTIFEGIWHGITSVRYLKNKGWFIFHTIFIWSMYLLSVQIGFWAMKETAVYSIPNALSVLTMGSLAMIVPAPGGGIGVYAWFVQNTMLIYGLKETIGFAFGQLMWSVQFFFALISGFIALSLLPYFNKNRIPVNEKS
>NC_016609.1|WP_014217808.1|1888192_1888537_-|aspartate-1-decarboxylase
MQIEILKSKVHRAVITEANLNYVGSLTLDEDLMDAANMIENEKVQIVNVNNGTRIETYLIKGKRGSGVCCLNGPAARQGAVGDIVIVISYAIMDFEEAKKHKPFIVFPKEGNKL
>NC_016609.1|WP_014217809.1|1888600_1889452_-|pantoate--beta-alanine-ligase
MIIFKYAEQLARYIQQQKTAGKQIGFVPTMGALHNGHIALINQSKQTTAVTVCSIFVNPTQFNNPTDYQLYPNTIERDIMKLEAAGCDALFLPSIAEMYPRGTTGLEHYDLGYLETLLEGKFRPGHFQGVCQVMFRLLNMVQPHQLFMGQKDYQQCMVVSRLLTLMKSGIQLVTCPTLREPDGLAMSSRNMRLSLHDRQLATTIYQCLVFIKQQLNQGVSWPVIKEQAEKMLTDVGFRIDYVELADAKTLEPVTVTIQSYPGARVALIAAFLHDVRLIDNMLM

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Crispr_ID: NC_016609_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_4

3057627-3057924

Orphan

Consensus_repeat	Method
TAATTATCTCCGGATAAAAAGTAAGTATC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_016609_4

>merge|NC_016609|4|3057627-3057924|CRISPRCasFinder
TAATGAACTCCAACCAAAAAGTAATTATCTTTTACTGAAATAATGTTACTTGTGATAAAGAAAAATTATCTCCGGTGAAAAAGTAAGTATCGGCCCCCAAAAAGTAATTATCTCCCAGGAAAAAGTAAGCATCGTCCCAAAAAAATAATTATCTCCGGGTAAAAAGTAAGTATCGCCACCAAAAAATAATTATCTCCGGATAAAAAGTAAGTATCAGCCCCCAAAAAGTAATTATCTCCCGGCAAAAAGTAAGTATCGCCCTCAAAAAGTAATTATCTCCGGGTAAAAAGTAAGTATC

>NC_016609|4|4|3057627-3057924|CRISPRCasFinder
TAATGAACTCCAACCAAAAAGTAATTATC	TTTTACTGAAATAATGTTACTTGTGATAAAGAA
AAATTATCTCCGGTGAAAAAGTAAGTATC	GGCCCCCAAAAAGTAATTATCTCCCAGGAAAAAGTAAGCATCGTCCCAAAAAAA
TAATTATCTCCGGGTAAAAAGTAAGTATC	GCCACCAAAAAATAATTATCTCCGGATAAAAAG
TAAGTATCAGCCCCCAAAAAGTAATTATC	TCCCGGCAAAAAGTAAGTATCGCCCTCAAAAAG
TAATTATCTCCGGGTAAAAAGTAAGTATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014218702.1\|3051639_3054747_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NC_016609.1\|WP_014218698.1\|3043464_3047559_+\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_016609.1\|WP_014218701.1\|3050186_3051635_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214510
NC_016609.1\|WP_014218705.1\|3057200_3057431_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014218707.1\|3059317_3060547_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014218713.1\|3067890_3068343_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319941
NC_016609.1\|WP_014218712.1\|3067189_3067882_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_016609.1\|WP_014218696.1\|3039817_3040654_-\|sialate-O-acetylesterase	unknown	unknown	gnl\|CDD\|377084
NC_016609.1\|WP_014218699.1\|3047573_3048704_+\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|366032
NC_016609.1\|WP_014218706.1\|3058066_3059056_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NC_016609.1\|WP_014218709.1\|3062210_3064889_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_016609.1\|WP_014218704.1\|3055884_3057138_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_016609.1\|WP_014218697.1\|3040686_3043287_-\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|178629
NC_016609.1\|WP_133055348.1\|3069958_3071170_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014218710.1\|3064885_3065812_-\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NC_016609.1\|WP_014218708.1\|3060626_3062159_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349937
NC_016609.1\|WP_133055347.1\|3048906_3050181_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014218711.1\|3066008_3067193_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NC_016609.1\|WP_041346669.1\|3068771_3069674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381355
NC_016609.1\|WP_014218703.1\|3054794_3055874_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014218702.1\|3051639_3054747_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NC_016609.1\|WP_014218698.1\|3043464_3047559_+\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.47127e-52
NC_016609.1\|WP_014218701.1\|3050186_3051635_+\|PKD-domain-containing-protein	gnl\|CDD\|214510	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.	1.15907e-09
NC_016609.1\|WP_014218713.1\|3067890_3068343_-\|VOC-family-protein	gnl\|CDD\|319941	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.18516e-82
NC_016609.1\|WP_014218712.1\|3067189_3067882_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.07233e-47
NC_016609.1\|WP_014218696.1\|3039817_3040654_-\|sialate-O-acetylesterase	gnl\|CDD\|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	4.35182e-39
NC_016609.1\|WP_014218699.1\|3047573_3048704_+\|endo-1,4-beta-xylanase	gnl\|CDD\|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	1.87743e-118
NC_016609.1\|WP_014218706.1\|3058066_3059056_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	1.21243e-22
NC_016609.1\|WP_014218709.1\|3062210_3064889_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	3.90401e-09
NC_016609.1\|WP_014218704.1\|3055884_3057138_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.29719e-11
NC_016609.1\|WP_014218697.1\|3040686_3043287_-\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl\|CDD\|178629	PLN03080, PLN03080, Probable beta-xylosidase; Provisional.	1.83374e-82
NC_016609.1\|WP_014218710.1\|3064885_3065812_-\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	9.45552e-45
NC_016609.1\|WP_014218708.1\|3060626_3062159_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349937	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.02662e-119
NC_016609.1\|WP_014218711.1\|3066008_3067193_+\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.94438e-26
NC_016609.1\|WP_041346669.1\|3068771_3069674_+\|aldo/keto-reductase	gnl\|CDD\|381355	cd19129, AKR_BaDH-like, Bradyrhizobium diazoefficiens dehydrogenase (DH) and similar proteins. Bradyrhizobium diazoefficiens DH is the prototype of this family. It belongs to aldo/keto reductase family.	0
NC_016609.1\|WP_014218703.1\|3054794_3055874_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	8.06318e-42

>NC_016609.1|WP_014218705.1|3057200_3057431_-|hypothetical-protein
MLLYERNMLLQTRRMQINVHLHAPLPAIAGAMKAEPASMGDPVGPKPAIPVSLGWFKMHFFTLHFLIIFSLQFSVT
>NC_016609.1|WP_014218704.1|3055884_3057138_-|TolC-family-protein
MKYCKAILTALFVLTTLLLNAQDSLSLTLDKADKLFLEKNLLLIAGQFNINAQKTLEIQAGLYPNPQFTAGLNIWDADNKKLFYVGEAGEKAFEFDQLILLGGKRKKQVELARQNTRLAELELEDLLRNLKYQLHNNLFSVYFDLLTLKKYNLQLQQLETIVSSYEEQTKKGNIPLKEVVRLKSVYIKLNNDKTDLLQSIQREQKDLQLLLQAKNFIIPQLDDLVWDRYEQLTILDSLQQMALQHRADYHLTEINKTIAGLNVQYQKSLAVPDLLLGTSYDQRGNAFLHQFMLTVGVPLPLWNRNQGNIRFAETQTKLSAVNQQVQQTAIESEVNEAWYNMQRSIQEFQKTRQIYNTDFTDVYNGMTVNFLKRNISIIEFVDFFESYNESVAEVNRIRKQLALSAEAINYTIAYPLY
>NC_016609.1|WP_014218703.1|3054794_3055874_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRLILLCVIMHLFLDSCRNKKTLDSSADTFVLTDTMLAKTKFTKATLDDVKNELRLYGKITADNSKLSQVFPIVGGNVIKVNVELGDYVKQNQVLAVIRSGEVAGYEKERLDAVNDVAIAEKNLQVAKDLFAGKLNSEKDLVAAEKELEKAKGALHRINEVYGIYNLKQGDLYNVTAPISGFIIEKNVTQNVLLNSNNVNNLFSIAQIDEVWVLANVNESDIGLISQGMDASIKTISYPDRVFTGKVDRIFNILDPDTKAMKVRIRIPNTDLALKPEMSATVSLRYNEKRKLITIPSSSIIFDKSKNWVMVYKDRSHIETRAIDVYRQSGDDAYILDGLQEGETVVCQNQLLIYDALND
>NC_016609.1|WP_014218702.1|3051639_3054747_-|efflux-RND-transporter-permease-subunit
MNKFIKNIIGFSIKNRFFTFFWVGIIIIAGIYSFLKIPIEAFPDVTNTQIIIVTEWNGRSAEEVERFVTTPIEIAMNSVQRKTNVRSITMFGLSVIKIIFEDDVEDFFARQQVNNQLRNVQLPEEVEPDVQPPYGPTGEVFRYTLQSDKRDTRDLLTIQNWVIDRQLRSVPGIADLVAFGGQQKIYEISADPVKLQKFDLTPLQVFERVSKSNLNVGGDVIEKNGQAYVVRGLGLLTTIEDIENTIVDNEHGNPVLVKNVASVTESSAPRVGQVGLNNNDDAVEGIVVMRKGENPGEVLQRLKQKIDELNTKVLPADVKMVTFYDRDNLMSYCTHTVMHNLVEGIILVTVIVFIFMADWRTTVIVSIIIPLALLFAFLCLKLKGMSANLLSLGAVDFGIIIDGAVVMVEGLFVALDHLAHQTGMERFNKLAKFGLIRKAGTEMGKAVFFSKLIIITALLPIFSFEKVEGKMFSPLAWTLGFALLGALLFTLTLVPVLCSILLKHNVREKNNVVVSFINKGVDKCFHWTFHHKSTSLLLAFGLLAGTLFSFKWMGTEFLPQLNEGALWVEAKMPMSSSLNETVKMVSTLRKELMTFPEVNGVLSQTGRSNDGTDPSGFYYVQMQVNLKPKEEWKRKLSMDDLVEEMDNRLRNYQGIIYNYSQPIIDNVAEAVAGMNANNAVKIFGDDLNMLDRLANQIVAQIQTVPGIKDVGVLRNIGQPEISVDLDEQKMAIYGVNKADAQAVIEMAIGGKTATVKFEGERKFDIRIRYQKDYRKDEQDIANLMVPTLRGEKIQLKEIGTIQKITGPAFIYRDNTKRFIGVKFTVRERDLGSTIMEAQSKVNKHVKLPEGYSIGWAGEFENQVRATKRLSQVVPISLVTIFLLLFIMFGNVKEAGLVLVNVPFALIGGILALHITGINFGISAGVGFIALFGICVQNGVILISEFNRKLKQKLSLGRAIIEGVRVRTRPVVMTATMAALGLLPAALSTGIGSESQKPLAIVIIGGLITATILTLLIFPIIYWFFYRNTFKHHDEV
>NC_016609.1|WP_014218701.1|3050186_3051635_+|PKD-domain-containing-protein
MKKITVFVSMVFIIAACKKKEVINLYEPRACFWLQNSQSFLATQYQDSGSATYIDSNFYFTACYDSTGAYVYDWNFGDGTTSAERNPVHKYSKRGKYQVTLTVANDSKVSHTAQKNVWVALGEKYITFNNTIDVYPLAVEETVNNEFVLLGASGNNASFYLMRFDSLLNQQSMKTFPAGYRFRSMQAVTDGNYIVTGTTQGAGKTNELIKIKADGTVLWNKNLSSDVDYTNAAQTPDGGYVVVGSKTINVPNVYGLTTNVTVVDKTDNNGNQQWEKIFDGELMIKTSDAAIEQDGIVMAGVVKRYNYSLCSTCDSLRLTKLDYSGNTVWKNTILWALNTYDFAGTHTTKLTNGNYAVYNDTTQAVYYFTADGQFVDRIFAENRIINLVNSADGKLFTLLDPGNYLGVSKLGIDGKEQWLNSITGGKPLNGNLQSVFSKPVTIRRLRNGSLLVVGKWNVYNTSGFGTHAEILLLQLNENGKPI
>NC_016609.1|WP_133055347.1|3048906_3050181_+|hypothetical-protein
MLCSVIASCKKEKEYVVNPPKIAENLQIDQVINDSTLVFKWGKYPGYNFKGYFLKRKATYIKNGVVNTYEEIIDSSADINHLSFTENQMPYASNLTYNVYARHDGESIWDTAYFFGSVSYNRPNTLLSGTPSDALMDLQNKRLYLITDGKKITIVNYDSRQVVSKEMPFTIGYCALGDYNGSSELYVPVNDGSLQILDAGTLQLKDKIYVGGTVIASVAAYNQKLYVASSNTTEPPHTNTIKVYDRATKNIVSSSGNGNNGRLLPLNGTSFEFVDLTIGFSTKSLNYHKFSSGGAFISETNNYYDFNSQLDASIMRSFPDGSKFISSYYGSIYDKSLSLLGALKGGAYADFAFNSDGSVIYAANTNPQRIDVFGYPVLTVTRSYPVKARPFRIFRDGNTLVCVSIYGQYGNSAYNYIIVEKINL
>NC_016609.1|WP_014218699.1|3047573_3048704_+|endo-1,4-beta-xylanase
MKKIISFVIIITTISCAPRQIQAQQEQSIPSLKETFKNDFLIGTAINPAQIEEKDPAAARLIPMQFNAVTPENSMKAAFIHPGWDQYNFTLADQLVEYGKKHHIKITAHTLIWHSQLPGFVRGMKNPDSLRQYFTNHITTLASRYDGKVFSWDVVNEALDDNGSLRQSIFLQQLGEDYIVEAFRLAQQAAPHTELYYNDYNIEQPKKRAGAIALIKKIKKAGVRIDGVGIQGHWRASHIPLAEIEQSILDFSALGVKVMFTELDLSVLPNPWDRDNADVSATADNSTAKDPYPNGLPDSMQTVLAKGYEDLFNLFVKHKDKISRVTFWGVNDGQSWLNNFPVRGRTNYPLLFDRAFNAKPAFYSVIATGKERTAAK
>NC_016609.1|WP_014218698.1|3043464_3047559_+|response-regulator
MRKYIYIFLSYLLITYLNTHAQTGQINFTSLSTRDGLLSNSVNAILKDRYGLMWFATDDGLNKFDGTNFTVYRYIPGDSTSLRTNEVLALHEDRSGNLWIGTSGGGLSLYDRKKDQFVHYPVRTGTPTLSGSDVIRGICSDYRGRIWIAQYAGLYMLDPETQTISKQQLRDEAGRPVKTTLLSIYEDSKQRLWIVSDNGLFLYNVQTNRFRLYENIKTDPSSLPTNKIKAVTEDKWGNIWVGTTTGLSRLKPDGSGFIHNRYLHGTEINYLAGDGQGFLWIGSFSGLYVYNIQADSCAVFTHENRNHQSLSSNAVRCIYIDKHGIYWVGTYQGGVCKYDKNLNLFNLTLNSSFQENRTNTAVIMALAENKNGQVLLGTNGNGLYAYDHTKEQVYPVSLPLKNIPANSLSVLALQPTRNNKLYIGTFARGVIITDLQTGAYKQFLKGPGPNDLTSNDIFSLFEDSKGNVWIGTNGDGIIVMKNERVIARYFPLGNGVTRLPINGYIRAFEEDADGNIWIGTHGGGIAVFEPATGKWTIYTQENSQLPSNKIHCLHRDSKGKMWIGTFSGLAAFDANKHLFTFFSEKDGLQNTMVYEIVEDATGKLWLSTNTGISRFDTETKSFRNFTHLNGLQNSNFIRGVGLRLTDGELLFGGWDGFNHFYPDRLTVNRNVPQVILTDLKISNKLVAAANDAPIKEHISIASEIHLNYKQNFALGFVALNYTIPKQNHYAYKLDGFDKDWNYVGAANMASYTNLDPGEYTFRVKASNNDGIWSTKDTTISIFVKPPFWRTTYAYIFYALAIATLLLYSRYRGITRLRKKFALEQERQEVKRIQELDRMKLKFLTNLSHDFRTPISLIMGPVDQLIEGEGNAGKLEKLSMIRRNARRLLNLVNQLLDFRKLEEHELKLQVSKGEFVSFLKEVSESFRDMSERKHIRFTFKTCIDRLDAYFDGDKMERILFNLLSNAFKFTLAGGQITVDLQKAESSDDQEYTWVYINVTDTGIGIPRDKKDMIFDRFFQNDTSTAILNQGTGIGLSITKEFIRLHGGNIRVESEPGKGCAFTIQVPLKRAHETVIAEQPVMKSEPEFVNNALNGSSHTQEDNPMNDALSVLLVEDNDDFRFYLKDNLRDKYKVIEAANGKEGWQKALSTHPQLIVSDISMPEMDGIELIKKIKSDKRTSHIPVILLTAMTGQEQQLKGLETGANDYITKPFNFEVLNAKIKNLLHLKNTMQSTYTKQIKIQAAEPVIESADEKLLTEIATYLEDNLTNPQLSVESLSKQCRMSRSTLYAKLLELTGQTPVEYIRSFRLNKAALLMEKSTMTISEISYQVGFTTSNYFAKSFKGQYNMLPSEYIAKFRKATPNDNS
>NC_016609.1|WP_014218697.1|3040686_3043287_-|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MRITFLLTAVAGLIFSTSSFAQKLPYQNPDLSSEERAKDLITRLTLEEKASLMFDQSPAIPRLGIKKFNWWSEALHGLANNDKVTVFPEPVGMAASFDDTLVYKIFDATSDEVRAKYHDAIRNGKENRRFLSLSVWTPNINIFRDPRWGRGQETYGEDPYLTSRMGVAVVKGLQGPADARYRKLLACAKHFAVHSGPEWSRHTLNLYQVRPRDLYETYLPAFKSLVMEADVRQVMCAYQRLDDEPCCGNNRLLQTILRDNWGFKHVVVSDCGAITDFFTSHKVSSDAVHASAKGALAGTDVECVWEGYAFKNLPEAVSRGLITEKEIDKHLLRVLAGRFDLGEMDDDAVVPWAAIPMSVVNNEAHRKLALDMAQESMTLLQNRNNILPLKRNAKKIAVIGPNADNDPVLWGNYNGRPVRTINIVSGIRAKMPPDGVLYDKACDLVENKVTQSYFSQCSFNGKKGFKATYWNNREMKGDPVITEQIANPLKLTTAGQHEFASGVQLENFSALYETEFVAAGTEEIVFKCGATGSMQLYVNGEMVRRTNNWRTLLSRVPFKVESGKKYKIEVRFAQLNNWQANIEFDFGKEVDIDFSGLISKLKGIDEVVFVGGLSTLLEGEEMPVSYPGFKGGDRTDIQLPEVQRNCLKALKAAGKKVIFVNCSGSAIGFVPETESCDAILQAWYGGESGGQAVADVLFGDYNPSGKLPVTFYKDTTQLAGFEDYSLKGRTYRFMSDPLFPFGFGLSYTTFSIGTAQLSKTNISNSESIELSIPVTNTGKRNGTEIVQVYVRKTGDSDGPLKTMRGFKRIAIPAGKTTTAVINLPPAAFEFYDEKFGKMTVAAGEYELLYGNSSAEKDLKTVKISIK
>NC_016609.1|WP_014218696.1|3039817_3040654_-|sialate-O-acetylesterase
MKIKRGLIAGLALLLMNNKTFSQDKNFYIFLCFGQSNMEGNAKFEPQDTTVDKRFQVLEAVDCANLGRTKGHWYTAAPPLSRCKTGLTPGDYFGRTLIANLPEKVRVGVINVSVGGCKIELFDKDNYQSYVATAPNWMTGMINEYDGNPYGRLVELAKTAQKDGVIKGILLHQGESNTNDTLWPQKVKKVYENLLKDLDLKAGSVPLLAGEVVHADQGGVCASMNNIIDKLPLTIPSAHVISSSGCADAADNLHFTAEGYRELGRRYAVKMLSLLGTE
>NC_016609.1|WP_014218706.1|3058066_3059056_-|winged-helix-turn-helix-transcriptional-regulator
MRVNSAFTGFFSNRLVMIPAIAIAMPAIFFIALSFTKHSDRDLQVKRVNLIIRQIGHRLLLQAGDSTSRVLPVTEVKEGTFLLKFEHEFIFNHDSLVVLTKSLLPKTQFPSGYTVTVHDCTTGDIAFGFQLNNTFPDILACSRRSQPPGCYTIEFTFNSAQVDPLETKPTPSGFKTTTSGNLLSNVIYGGILLLLCVALLSGRVWKKATPGPVENQNNSIVKKSVPELAALGKFLVDPENQRLLLGSEVISLTTKEYKVLELLNKSFGELVPRETLMQEIWINEGVITGRSLDMFISKLRKKLSHDPELRITNVHGRGYKLEIPGIFNS
>NC_016609.1|WP_014218707.1|3059317_3060547_-|hypothetical-protein
MKRILALSLNALLLFCSCQKSSNDSPAPVTNSDSAAVTVVNGYGSGTYKIGDTVHIWGNPTSDNYVFDQWTGYTSLLQNSGEWHNIFIMPAQNVTVTASQKAITPLSLKYEKIKGVNVSKNVYSCFPASQKGVVFLLHGSNGSALNLVTNYEWIQMMKDLVTAGYGIIVTEAEEVSLNSDINGNGSLQWKTSPVDSTTNVDMGNIKAIRDTFYTRGSVNRSLPLYSIGMSNGGAYSCCLSYLFKFKTGVSYCAQAYKVIFDVSTIPYQFCMAKNDDQPEVGPTGNADALTYSQGLSSRGICSKYFINDRSPVYPERFARESDISVATSTAFFKELKNNNWLTSKNFIKANSDSVSKICLANSAAYPTYNSLNVLQRYFVNMQIDVMFAGHQFYSDLNKTTIKFLNSGCQ
>NC_016609.1|WP_014218708.1|3060626_3062159_-|M20/M25/M40-family-metallo-hydrolase
MRKFLIAFCFIPLASLAQEKVDLDMIGKIKKEGTDNSHVMEIAFHLTDVSGPRLTASPGFMRAANWAKDEFTKMGLVNAQLEPWGEFGKGWQQEHCYVAMTAPYYQPLLAIPRAWTGGTPGKKMLSGEIVLLKIKDTLDFAPYTGKLKGKIVMIWTPTTLKPSFEADAGRFTDSALEKMAAAEPKPQVESRRRQQTGNWVPVEMQRRINQLLNKEKPALILSFNPNGNDGTVFVGGGGSYAKDAEEVPANVMLSSDDYLRLQRLIGNGQKVEIEADVKTSFYKDDLKAYNVLAEIPGTDPTLKSEVVMMGGHLDSWHAATGATDNAAGCAVMMEAVRILKALNVQPRRTIRIALWSGEEEGLFGSRNYVKNHFADPAKMELMPEHSTISAYYNLDNGSGKIRGVYLQQNQQVRPIFNSWLAPFNDMGAKTLTIDNTGGTDHLSFDAVGIPGFQFIQDKLEYDTRTHHTNMDTYDHLVADDLKQAAIIVASFVYNTAQRDAKIPRKELPKP
>NC_016609.1|WP_014218709.1|3062210_3064889_-|carboxypeptidase-regulatory-like-domain-containing-protein
MTNRCIKVLNLSLIALLLSLAGLAQNIRGRVTDSTGKAVPYASINLVDSVNNRIIGYAVTDAGGAYTLSLPANTPVSKLVIKVMSIGYKTRSRPITDAHLAYDFILSVSANQLQSVEIRNSRPVLRAHGDTLAYKVSAFAGAQDMVIGDVIKKLPGITVSSDGTIYYNNKPVSNVYIDGDNLLDDKYNIATSTIPHGVVEQVQVIQNDQPVKVLRNKVMSDDVALNLTIKKGAKMQLIGQESVGAGLPHHYDVDLNAMMFKDNYKAINYLKGNNTGYDPQQELVAHNLSNHEQLVDNAMPAALLSLGTVNNPALSRSRYLFNQSGLLNLNNLLKFRHDIQIKLNAWYFHDNQRQDYSQVSTIFLPGDTVAYYSTQQKRSRTDLLHTQFTFNINRNRYYLNDALVLDNSQTAYYSNLNTNNATLEQVLHDKPLSFSNEFNLIRSLRSNHIIQAYSYVSHSAEPEYRTIGPDYEPEIFNGNNKYAQLIQRVNVPTWYTTNYLSLKIPANFITQSFKAGFSVQSQKLRSGLDVVQVDDKINQVSDSSMNNLSWTRTKVYAEADYDLPGPVLQANLSLPVSLQQLNYSDNRYALNKQLTRVYYNPLLRIKYQVSPENYLFLSYNYRNQMGTIEDIYQGYILKDYLTLYANSAELIEKRDQKASAGFSYRKSLQMLFASLNISYDHPAANKIASAIITNNLQQQVMLPYPNAAGSWAVSSTASKYFFALKTTFSAGLQWQHTRSVQLQNDQLLSFNTITKTGSLGANIKAGKQVAIDYNATFIQTGSHAAAAASANHINQLQQQASVEYNPLTNVQFRLSGEYYFTRRAGNPDLQYFFADGSVKFKPNKGKTKFELSAVNMLNVKTYKAFYLQANMFTASSYTLPGRIVMLKAMFKI
>NC_016609.1|WP_014218710.1|3064885_3065812_-|GLPGLI-family-protein
MKKQLQLAVGLLAAFIGAEAQKPDTAWLMVHYKFTHVGDTTNPANPWLENTVLFVGKNASAYKSYDGLVADQKFKKAYAEAVASSPDGHLNINRIGAGSRTQYFQYPAEQKLFTKDAVMVNEYLIEGPMPVIDWKISSDTATFGGLHCQQATGHFKGRDYIVWFCPDLPVHTGPWKLNGLPGVIVDAHDTKNTVIFKFDGVEKMAPSPKDQSVGGNKEDKDLPPILRGLNDDPNMIAPPARYTKITQKEFDKLRAAMEKDPEAFAQAINASVNRGDGPQQDHVMIKRGPGPKGTPGAVMNNPIELPEK
>NC_016609.1|WP_014218711.1|3066008_3067193_+|histidine-kinase
MLAAKKRFWIEIMLHLLFWAGVFYVLTSLDNSHIQIYARRPGPHIASDHADEPGVSAYVYIILLSLVLLFYGNVFWVFRKVIRYKRDAIRLAICAGWFAMVFGANYLIDGPLFNRANPDPVPPPPQMKARLDSIFSAPHPDTVFTRPPFDAVNFTVRNWLHMQPYILFAFLVIEGLAIAYFFLKEWARSELRRTQLQANQLSTEIKFLKSQINPHFLFNTLNNLFSMAQAKENDELADGILKLSGMMRYMLYDSNEERVPLGKEIAYLEECITLNKLRYADEEVLVTFEHPGHNADVNIAPMLFIPFVENAFKHGVAIGQRGAIQIAITVSGGKLNFSCVNRDYSAIKKMEMNISGIGLENVKRRLELVYPGKHQLMINNESGKFMVNLEIDLS
>NC_016609.1|WP_014218712.1|3067189_3067882_+|response-regulator-transcription-factor
MITCIAIDDEPKALEVIERYCQKIESVSLRATFREPLKAIAFLNREKIDLIFLDINMPEINGMQLLQTLSPRPLIIFTTAYSQYAVESYELNAVDYLLKPATFERFLMAINKAGAALATKNTPVTNDDAAVFIKSGPQTYRVKIGEILYLEKNGNYITVHLKDGNILIRENMSDIFDLLPAPDFIRVHKSYVVGIRHISMIEVHQLIVNGEKIPVGSTYRESLRDRLGIG
>NC_016609.1|WP_014218713.1|3067890_3068343_-|VOC-family-protein
MAKNNLPVMHNVGIVVESLDGAITFFTELGLKLEGRGNVEGEWAGCVTGLGDQRVEIAMMVTPDGHSRLELSRFLTPPTVEDHRTSPVNALGYLRIMFTVDNLDETLTRLYKQGATLVGEVVQYENIYRLCYIRGHEGLLIGLAEELGDK
>NC_016609.1|WP_041346669.1|3068771_3069674_+|aldo/keto-reductase
MNTTYKPIDMPALGFGTLIPDATETYNAVKYALEAGFRHFDCAERYRNESVIGEALQAGLVAGDISREDLFVTTKLWNTNHRPERVEPAFEGSLQRLLLSYLDLYLIHTPFAFQPGDEQDPRDQNGNVIYDSDVSLADTWKAMEKLVDGGKCRAIGLADVTLEKLQFIYESARIKPAVVQVEAHPYLPETELLEFCKSKGIILLAFAPLGHGIKPGPLEDPVVLSIAARVGKTPAQVLLAWAIQRGTAVLTTARTAARIQENFDISPLPEDALDEINRIQTRQRFNSVVHTGVPGFIPRV
>NC_016609.1|WP_133055348.1|3069958_3071170_+|hypothetical-protein
MIVEKQTLKIDQVINDSTIVLSWNKYTGASFKQYTLTRQGTYLKGDKFGQYYDTVFTSSNANETSFTENKMPLATDIFYFLMVETGTDVPGSYPPQVIYTRPNSLLHCIPTDVIFSKTLNRLYIFEQKKINIIDYFTGRPVLSKEFPAGIGYCDLATYNGSNELYVPGNDGWVNILNATTLEQIDHIYVAGYTIGSVLSRNGKLYVSSSDQSLGAFSNNMKIYDRATKALVSRVGSYYPSRLMAFDNTNLEMIEMNLNMYPSYPTYYLFAPDGTLVFSKGGSSLGNYNMSTSILRSFPYGDRFITSNFGTVISKSFAFERYLKQDGHYADFAFNNNGTVIYAADAQSKKIDVINYPANTNTGSYPAKLYPFKLFRDDNMLILVSKTSQDNYSDSYILVEYIKL

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Crispr_ID: NC_016609_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_5

3983029-3983146

Orphan

Consensus_repeat	Method
GATGCTCTGAACCAACTGAGCTAAACTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016609_5

>merge|NC_016609|5|3983029-3983146|CRISPRCasFinder
GATGCTCTGAACCAACTGAGCTAAACTCCCTTTTTGATTTCTTTAGATTTTAACTTGTTTGCCCGCCGATTCTCCCGATTGTAAATCGGGATGCTCTGAACCAACTGAGCTAAACTCC

>NC_016609|5|5|3983029-3983146|CRISPRCasFinder
GATGCTCTGAACCAACTGAGCTAAACTCC	CTTTTTGATTTCTTTAGATTTTAACTTGTTTGCCCGCCGATTCTCCCGATTGTAAATCGG
GATGCTCTGAACCAACTGAGCTAAACTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_133055276.1\|3996852_3997683_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_016609.1\|WP_014219381.1\|3976158_3976566_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NC_016609.1\|WP_014219391.1\|3993802_3996184_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_016609.1\|WP_014219376.1\|3970238_3972683_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|225803
NC_016609.1\|WP_133055275.1\|3975649_3976165_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_049815535.1\|3972887_3973298_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_016609.1\|WP_014219392.1\|3996226_3996673_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NC_016609.1\|WP_014219382.1\|3976592_3977669_-\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NC_016609.1\|WP_014219394.1\|3997751_3998567_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_016609.1\|WP_014219388.1\|3984945_3987858_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366777
NC_016609.1\|WP_014219379.1\|3975096_3975525_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_016609.1\|WP_041348711.1\|3981719_3982400_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014219383.1\|3979131_3981597_-\|DUF4965-domain-containing-protein	unknown	unknown	gnl\|CDD\|374492
NC_016609.1\|WP_014219387.1\|3984389_3984932_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014219378.1\|3973276_3974947_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NC_016609.1\|WP_014219386.1\|3983325_3984375_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_016609.1\|WP_014219385.1\|3982751_3982922_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014219390.1\|3990002_3993122_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014219389.1\|3988010_3989990_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NC_016609.1\|WP_155966910.1\|3993170_3993308_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_133055276.1\|3996852_3997683_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.16868e-08
NC_016609.1\|WP_014219381.1\|3976158_3976566_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.62658e-61
NC_016609.1\|WP_014219391.1\|3993802_3996184_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	4.96614e-54
NC_016609.1\|WP_014219376.1\|3970238_3972683_-\|mechanosensitive-ion-channel	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.64118e-44
NC_016609.1\|WP_049815535.1\|3972887_3973298_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.49265e-30
NC_016609.1\|WP_014219392.1\|3996226_3996673_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	1.0659e-07
NC_016609.1\|WP_014219382.1\|3976592_3977669_-\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	0.00121225
NC_016609.1\|WP_014219394.1\|3997751_3998567_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	2.81812e-12
NC_016609.1\|WP_014219388.1\|3984945_3987858_-\|hypothetical-protein	gnl\|CDD\|366777	pfam01734, Patatin, Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.	6.85346e-05
NC_016609.1\|WP_014219379.1\|3975096_3975525_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.50505e-14
NC_016609.1\|WP_041348711.1\|3981719_3982400_-\|hypothetical-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0.00313542
NC_016609.1\|WP_014219383.1\|3979131_3981597_-\|DUF4965-domain-containing-protein	gnl\|CDD\|374492	pfam16335, DUF4965, Domain of unknown function (DUF4965). This family consists of uncharacterized proteins around 840 residues in length and is mainly found in various Bacteroides species. Several proteins in this family are annotated as Glutaminases, but the function of this protein is unknown.	2.12825e-86
NC_016609.1\|WP_014219378.1\|3973276_3974947_-\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	6.48834e-46
NC_016609.1\|WP_014219386.1\|3983325_3984375_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.21013e-106
NC_016609.1\|WP_014219390.1\|3990002_3993122_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_016609.1\|WP_014219389.1\|3988010_3989990_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	2.30236e-25

>NC_016609.1|WP_014219385.1|3982751_3982922_+|hypothetical-protein
MQLKRLFIGTKREASHPNQSKDGGSKELNGQVKRNNHEYPEPVFNIKQQLRGREMS
>NC_016609.1|WP_041348711.1|3981719_3982400_-|hypothetical-protein
MAENQILYVPNFEDLVSMPYTGIINAICWSRKLTGDFAEIVKKVTLTGNITTIDPEELNELSLSEQGQLAREILLNDLELLKAHGASPVLNVINHYDRDDAYPFFPTDVYSYHVDRSPVPTDTFLCTYYGDPSEILPNGQGKQKILIPEIRAELRKLYQGAEDGFELFLSEHFFDLHYQAETDARPISLGIGNLWRLAVDHPESQVPPCLHRAPAEKSGPRLLLIC
>NC_016609.1|WP_014219383.1|3979131_3981597_-|DUF4965-domain-containing-protein
MTRLNSIKVLAVTTAIFVSTWIFAQDRQAPAYPLITHNTYFSIWSTTDQLNASTTQHWTGADHSLLGLINVDGRIYRFMGKAETNYKTILKASDETAYPVRYTETQPQGDWMSANFNDAAWKSGQAPIGDNEKIAKTSWTSNHIWVRRSFTITDLANINELFLKLNHDDNVEVFLNGKKIYDKVGWTNSFQYQPINKTDLTTGQNIIAIHLENTAGGRFLDFGLVDKVKDNTDNMALAEQKHVAVTATQTIYDFTCGNIDLKLTFTSPLLLNDLKLLSRPVSYITYGVKANDEKKHNVKVFLSASSNIAVYQPAQEVSTRRYNAGGLSILKTGTVAQPVLQKGADDMRIDWGYFYVAVPQSSGAQQFITRSPDAASVFGNGSVTSTAATGKSLALNTVIPIGAVGKEPVEREMLLGYDELFSIQYFNTNLRPWWNNDGKHTIEGQLAEAAKEYKTVMEKCAAFNNELNNEAVKAGGNMYAHLCALAYRQSIAAHTLVKSPEGEILWLSKENNSGGFINTVDVTYPSAPLYLLYNPELVQGMLNGIFHFSETGKYAHPWAAHDLGTYPAANGQTYGEPMPVEESGNMIILTAAMANRQGNANYAKLHWKTLTTWVDYLTKEGLDPKTQLCTDDFAGHLARNANLSVKAIVGIACYAQLAEMLGETETAKKYRAIAESMVPKWMQMADAGDHYSLTFDNKETWSQKYNLIWDKVLNLHLFPQKVYDTETQYYLGRQQKFGLPLDSRKTYTKNDWILWTASFAPQQDQFEKLITPVYRFTLETGSRVPLNDFYDAITGIRENFKARSVVGGFFMKMLADSTKVK
>NC_016609.1|WP_014219382.1|3976592_3977669_-|WG-repeat-containing-protein
MTNNLLPSPIVDRYAIQYSELVYEAITIYKNSDDKWGVLSEIMPGVFSILVEPVYNSISFNHVLNYLQAVFYPEDHWQVDGKNFYFYDINGQVQASVLGVSTVQIDEGGCLLVLKEDAMGLLDNKGRSVIPFSYVSLHFLQTGIYKAQQGDGYGIIDVSENVLLDFKYRYIFNQVKNDRVIVQDLNSRYFTFHFPTRELHALPYDSIFLASPNTGAEGKTAPGLYKVIRQCQETEFDYYDNGMSAFTGIWGIINADGAVKIPCDYAFVDVFEGTGFFKVAKGVFNFYFEEETGNLIAEGVKWGVVDTNNKIIIPIEYDWVQEAEEGQWVVNKGGTVYFNESYEADHWAVRGGKSELYS
>NC_016609.1|WP_014219381.1|3976158_3976566_-|cupin-domain-containing-protein
MQITKIGSQASAKGPEDWFTGQVRIDPLFLPNDARRGAASNVTFEPGARTAWHTHPLGQTLIVTAGCGWVQKEGGPVIEIHPGDVVWFEPNEKHWHGATPVTGMTHIAIQENLNGKLVDWLEKVTDEQYALLKAY
>NC_016609.1|WP_133055275.1|3975649_3976165_+|hypothetical-protein
MKRIILFAAIIISAVAVKAQAPLGFGAMNQPYFRHFGQVADSNYHQKKWFLSKYAGISAGYLFFNGGGGPFLSAPAGLQINRQLTNNVYAFAGVNVAPTIFNFNTPYNFNKTGSFMNNNRYGVSSSAYMGLMYINDERTFSISGSIGVSNYSGQSPFYRPAPPPAVRNYHQ
>NC_016609.1|WP_014219379.1|3975096_3975525_+|response-regulator
MQTEAIWIIDADEDDQVMVREVWRELKLSNELVFLESAKAALEHLGSIDTAPFIIICELNLHKMDGFELRERMLATGLKIFRSVPFIFWATEVSEQQITRAYDLSIHGLFIKDNSFLELKKTFTHILNYWLKSKMPSKKVNA
>NC_016609.1|WP_014219378.1|3973276_3974947_-|PAS-domain-S-box-protein
MKQQPGIPEPGAIDVPDDSTILYLLPTAVCVCDMTGVVIRYNEKAAQLWNRRPRVGDANELYCGCYKLYLPDGTHLPHEQSPMAVCIKDGQPRKDVELILERPDLSRLYIRVNVVPLLDGTGKQAGVINCFDDITWQKEAERVLSRKIGEEKLQELAISLEKIVQRKTQDLVQKTEELKKSEERYHKMVEEVEDYAILMLDKEGTIVNWNKGAEKIKGYKEVEIVGRNFQEFYLAEDRKKGLPLQLLELARQTGKALHEGWRKRKDGSVFWGSIVLTAIHNDEGRVIGFTKVTRDLTERKLAEDRTNDYLRQLEFQNKELEQFVYAASHDLKEPLRKMNFYANYIADQPENRLDEKSRDYLSRSLKAAARMKVLIEDLLIYSRSTIRTDVYEEVDLNKVIEEIAGTHKEEIGDGEVIIEKLPVVYAVPFQIKQLFSNLIDNAVKYKHPGRDVVIKVTVKLVEGSQVPVHNLERNKKYFQISVIDNGIGFDPAHANRIFEIFQRLNNSTNAKGSGIGLAICKKIVQNYKGAIEANGEPEVGARFSVYLPADQAMPLQ
>NC_016609.1|WP_049815535.1|3972887_3973298_+|response-regulator
MGKNKVNILMADDDVEDIELIEEAILNIEPDATLHKFFNGNSVLEYLRSAPDDSLPCLIVLDYNMPELKGSEVLSFMKSKKRYDTIPKVVLSTSNAYRHQHECLNNGASEYIVKPDNMKELQSLAKKLLTYCNGIA
>NC_016609.1|WP_014219376.1|3970238_3972683_-|mechanosensitive-ion-channel
MRMPVGRLSILISCLLLACSALAQHTQHTPHTDSSKKFNIADSARRDTARRDTARFRRNNALRDLFADSAKLTSSDFQLQIEKTYLIMNNVRNKSELGLRVKEIKQDLADNDSMLAILKDNVLNNSAALNLRNLQVFKTLLLHIQEASKEEHQLLDSTEGKLVDLRNSMKALVGDTTMRQLWRDSALRAQFQPQLKGMRELFTGATQKLRGAMAAVNLLQTHVSANSLTTAQLLDKVTSLLNTSAARIFGKEYNYLWEKDTISLSNSARSSIGKAYDGERKALHYYFKDSNQKRLFLLLIGLLFFIWLYRNIRTLKRLNAMESLANMEFEYLPNNYIVASFIMMFAVAPLFDLHAPSVYIESMQFLMLVILTVICWKKWPRRLFLYWIAVMVLYICFSFTHHMADPGLGQRTWLILLNILSVVFGMLFLSQIQRNLPMRGFLRFVINLHNIMNLVSVICNMAGRVSLAQILGSTAIFAFTQAIGLAVFSKICMEAILQQIVASRLRRNVQARLNYQPVLTGFRRPILFLTVILWLIVFFTNLNIYTSVMDALGVFLTTPRSIGSAEFTLGGVLLFFFIIWLAHLLQKYVGFFFGDTGTAEDDEIHNKGARSRLLIARLILLCLGYLLAVAASGVPVDKITIVLGALGVGIGLGLQNIVNNFVSGIILIFDRPLQIGDVVQIGDKQGRVREIGLRSSTLMTGDGAEVIIPNGDVLGQQIVNWTLSNNQQRIQLNLSVTGNNDMEVVTNTVKKAILASGFVYENREPSVLFTKVHDEGFDLTVYFWCVDIGKAGEAKSAVNLLLYQHLKSVGIQLK
>NC_016609.1|WP_014219386.1|3983325_3984375_+|LacI-family-DNA-binding-transcriptional-regulator
MAENREVTIYDIARHLNISAATVSRGLNNNPAVSKNTRKKITEAAQKLGYQSNTFASSLRSKSTHTLGVLVPRLNSHFMSSVLAGMEKAANKHGYNLIIAQSLEEAENEKQNADTMFNKRVDGLLISLAYDTSNLNHLEPFFKRNIPVVFFDRVQSHTSSISVVINNYEAAYKITSHLIDQGCRRIMHIGGNVLRNVYKDRFEGYRQALKDHDLPFQEKWHLVTALSEEDGTAAANHILGFPASKRPDAVFCANDTSAVYCMMALKAAGFRIPEDIAFAGFNNDPISKVIEPNLTTVDYSGETMGNTAVTNLINHLKGISNLYSTNSITLRANLIIRASSLKKVAGSKK
>NC_016609.1|WP_014219387.1|3984389_3984932_-|hypothetical-protein
MNKLIAKKYIIPYIALFLLFRFIFGEIESYYIKNAVVSPHPIDVHSWEAKFKIDKQYVMDAKHFGYDHQRYFTSFFPLDLVFPVVYTLLFMSCLQVCTHLKLYRILAVVIVMGAIFDYLEDLSFATYLLGAGDGIATVVSYFTTIKTILLIANIFMALIWILVWLKQLVFKNENNIAYKR
>NC_016609.1|WP_014219388.1|3984945_3987858_-|hypothetical-protein
MKRILPVLLVGLVSFTLIVSYLSLQNDRAADGKKAFQFTTFNRSDSAGANTILDFWKEDVRRSNAVTSLIKLDYIFMLVYLSFFLFIIYRLHANEKRRWMRAILKVGGVALLIGTAIDAVQDNKISHIIQFNESAVDMRGYTYSKFTFIGVAILSTLFVLIPRAPITFSSAKVSVKVFLEGARSLLSQFLKSIWIFFPGIIFLVLCIAALWLAGQGKDFIVAFANSKTDVINYDGVHWNYSRIVFFMAIGFWSYVSWYSSRIIYYIKEKKHEEPVAEISKAIGKSIPSQGKTYPNVYKSFLVEFPKTIGNTCFLVLELAILQSPLVVLAMQSKWAVLLLLELILAFYFLNKWIGNWMSKSPQNESAFRFLFNVLGVVFLVSLVVISFGQSVGFWSILLLIILLHIVYIFYTSLHRKNVSQVPAPPPAPAPVRISNTKRIMAYFCIPPLETGYYTWFLITSVMGIGCYLGIIWSLTFARVVGPFSSVLLAFGVLLIFGNFITALSVKYKLNFHFLLFLLASSIGMYENHCVRQKKLQDVNKVTIKKADRAEFKPYLLAWLQKNAPLNDSTSKIDMYFVMSNGGASRSGYWTASVLGRLEDLAVRSDGRRFSDQVFCLSGTSGGGVGVASYFSMLGNKGTITSRSRYEQSLQAYLKQDYFTYTFAYLLGPDYFHYIIPGLKLLTASDRGAKLEESFEASCQTDTPLYKIPFNENFSSFPALDKNGKIKYPILCINTTRVQDGNPGVVTNLRMDSATFNNRVDVVKLLDDTMDISMASGSILGARFPYLSPAGKIKDNYFVDGGYFDNSGAGVVQELIRAIIVTGEKASRNNEPIGKLIKRVRFHVIHIVNSPIEVDSTGIKSIPPFKNDLLAPVLTILGAYDMQTTVNDGRLINYLNDLRDYDSFPADYKRVSLYKSKDEWDNDKNLHRFYNAEPPYAMNWFMSDTTARRINIRLQENPNLNAIIREIKSNR
>NC_016609.1|WP_014219389.1|3988010_3989990_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MNHLLIKSLTVSACAMLLFTRCKKVLEEEPRSTYTPDFFKTEKGVLGGITSQYAHLRLIYGQPYYYNTLETGTDEYTYASSADQNFKDVDLSGVGNLTAASSRSDALWGTAFSNINTASGIIENGGAVPTISAALLAEARFFRAFDYFLLVQTFGGVPLDLGAGELKFNISASRKSVRNTVPEVYTKAVFPDLLQAINDLPDAPRVTGGVTKNVARLYLAKAYLTYGWWLQNPNNIPTYPAANRTDPDNHDAAWYFQKAYDIAVQGISNPGSYGLESTFYDVHVGGNDRGKEEMLYADHTQDNEFYNGACLSCFDSESGNGRNGATWMVTFNYTGIRSAPNPTGDGAGVSPVQREAAQSLGRPYTRMCPTIGAITNTFAEKTLDSRYDGTFTTVFRGNWPKGGTTNATLYNANDMPVTPGQPILSFLNDESLTPGITYPSGASFPGKSSNAIGAGVLPGRADFVISPRGISRIVFPNLWKIGEYRTDNGTGLGQPNATSTRPFKIAKFSEFYFIAAEAAVKGATPVAGKSARELINVIRARAGKWKFSNKDNAAFVADNSAAMTAATPAVIDIPYILAERSREYFGEGMRWFDLVRTQTWSDIAGTYDICAATYGSHTPQTVTRTIDKKYYLRPIPQAQLDGMDATADEKAAYQNPGYQ
>NC_016609.1|WP_014219390.1|3990002_3993122_-|TonB-dependent-receptor
MLNVLHPKKRSLQGRLWEKVLAATLLIVCCFFADTAAFAQNTVRGKITDQKGAPVPGASITVKGTNTGTNTGMDGSFAIPASKGAVLVISSVTFAVKEVTVGDDNAILNIQLAAAATDLNEVVVIGYGTQRKEAVTGSVASIGGEKMREVPTPNISQALQGRLPGVDIAQTSTQPGATMQIRIRGTRSLTGDNNPLIVLDGIPFIGSLADINPNDIKSIDVLKDASATAIYGSRGANGVILVTTDKGAKNRKPRVSYSGYVGAQKVFAKYPMMNGPQFVALRKAAGQYTNGQDEADSVNTDWQDLLYQTGIVTDHNISVSGGSETGSYNFGGGYYNNQGVIPTQQYKRYTVRGSLDQGVGQYVRVGLTTNTNYNQTQGSQVGLYNTLSMTPISSPYNADGTLRRGVRMIADNQYVYTKDVVKNLTNNDQWVNETRGFATYNSVYGEIKAPFITGLKYRMNLGLDYVQTNNGAYTGAGVGDALNPTTPSSASVDSRNTVHYTLENLLTYDRTIGKHAINAVALYSAEQLRYVRTNMAARDIPADAFQFYNLGQAAGQITVDPANQDYQLSGLKSAMGRIMYSYDNKYMISATLRSDGSSRLAPGHKWHTYPAISAGWNLANESFIQSLDIFNTLKLRAGYGETSNQAIAPYSTLGKLDTRPYNFGSSYSTGLYVTQLPNPNLGWEFSKTFNFGLDFSILKNRLSGTIEYYITKTEGVLFGQTLPPTSGVTSITGNIGTTQNKGFELGLNGVILDNVNGFTWDAGINFYVNKNKLTSLASGQTRDEANWWFVGHNINAIFDYQRVGLWQKDDAYLNTLEPGGNIGMIKVKYTGGYKSDGTPERAIGSADRQIMDVDPDWQGGFNTHVAYKGFDLGVVGFYRHGGILFSTIHGASGYLNLLSGRRNNINVDYWTPDNPNAKYPKPGGIVSSDNPKYGSTLSYFDGSFMKIRTITLGYDFNQSLLKKSNIKLRMYATVQNPFVMFSPFHKESGLDPETNSYGNQNVSSTGAISSNTGLLNRLLTVGYNTPSTRNYILGANLTF
>NC_016609.1|WP_155966910.1|3993170_3993308_+|hypothetical-protein
MAIPFTRPVCYKLYTVYTAMATGECFTWTTPGLVVENYPGTWHTK
>NC_016609.1|WP_014219391.1|3993802_3996184_+|ABC-transporter-permease
MFKNYLHLALRQLRRNRGYSFVNIFGLATGMAIAIVIGIWATDELSFDQGIPNGNRVVEIMQNQWPQGQTSEKTPPLYVGTTVSPALNPWLQNGNYRNVFAQTAMVLWAGRHLLVNGDKTVAQTGTSAEYTFPLIFGYRFLSGTAASMRDPNTALISRSTAIALYGTENAVGKTFKYENRRPFVVGGVYADQPANSSLHEYDFFISMASEETNWVRIIDDFENHSCRMFARLAGNITADQATARIKNICSPHVKYAYENYQVLPYPSLYLHYDDTNSLSGGRIVYVRMLGIIGVFILLLACINFMNLATARSEKRAKEVGIRKTIGSLRSHLIAQFLGESVMLACFSFIIAIALAALTLPWFNQLAGKTMTFPWTNPLFWVLALICTLITGLLAGSYPAFYLSGFRPVKVLKGIVKAGKGASNPRKVLVVIQFSISLALIIGTIVVFRQIRFAKDQPLGYNQGGLITVPANTQELDAHYEALRQGLLNTGMVANIANASADINAFYRNNRLEWEGMSEEAKTVSFRDVFVNADFGPTIGWSIIKGRDFSRAYLTDSTAAIVNETGARILGFKDPIGKTIKHWGKTYTIVGVAKNMISNNPYYPVQPAVFMGEGGHSVFTIRIKPGVPVRTALAAMEPVFKRFNPASPFIYSFIDEEYQKKFNTESRIGNLATVFSGLAILISCLGLFGLASFVAEQRTKEIGVRKVLGARVIGLWALLSADFIKLVALSMLIAIPLSYYCMNQWLQNYVLHTSLSAWIFVIAGLGLLFITLATVSYQAVRAALMNPIKSLRTE
>NC_016609.1|WP_014219392.1|3996226_3996673_-|SRPBCC-domain-containing-protein
MANDFNSSITAKISASEAIKKISNVTGWWGVTFTGHSEKQNDTFQITMGGDSFFDMAVSELVPGKRVVWFIKDCYMPWFTDKKEWANTRLIFDLNEHNGETDLTFTHEGLTPEVECYTDCEQGWTHWIKTSLQSYLTTGQGVFRKPTK
>NC_016609.1|WP_133055276.1|3996852_3997683_-|helix-turn-helix-transcriptional-regulator
MTTFSFNPVTPHPLLQPYVAKMWVFESSGRLPALDKKLIVPNANFKLTFTSRNGIVARVDDNTFTQKENELSFTGLIDTAVMLDPTDDIQTNTILVEFNPLGAYRFFQLPYTEVKNHIVGMPDLLGKQVSGLQERIGEAKTVAGKVQLLQNFLLKRLENASSDLIYDFCINRIVENKGLITVAQLEKETGYSARWLHKKFSANLGTGAKNLAEIIRFKQFYQAYSTGADLFHLKEHIYEYYYDQSHFLKAFKRFTGSTPTDLQGGLNELATKHYTS
>NC_016609.1|WP_014219394.1|3997751_3998567_-|universal-stress-protein
MKKILIATDYSAEAENAAEYAAAVAAEQGHELILFNYSEISIHLLNARASSDDIDGMLELFRKNLDKAADALSKKYNVPVKPYLASGNFYNSLVACINQYKPAVVVMGMANRSVEQDLLGNTTTSTIHKLEFPLLAIPVSAKYKGIKNVLFACDLEKGVEDKVLKDVHELATVFGAAVEVFYVTETLEALQGADEAGHAVVDKTLAGINYYYKNVQSRKIISAIQEEIQEIHADLLIMSPYKYGFWDSIVHRSKTRMMASGNNVPLLSLPS

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Crispr_ID: NC_016609_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_6

4322237-4322339

Orphan

Consensus_repeat	Method
TAAAAGGGTTTGAAGAAGGTCTCT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_016609_6

>merge|NC_016609|6|4322237-4322339|CRISPRCasFinder
TAAAAGGGTTTGAAGAAGGTCTCTCTTATTCGATGCTGATGTCTATCCCCGGCTTCCCGGAAGCAAAGAGTTAAAGGAGTAAAAGAGTTTGAAGAAGGTCTCT

>NC_016609|6|6|4322237-4322339|CRISPRCasFinder
TAAAAGGGTTTGAAGAAGGTCTCT	CTTATTCGATGCTGATGTCTATCCCCGGCTTCCCGGAAGCAAAGAGTTAAAGGAG
TAAAAGAGTTTGAAGAAGGTCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014219656.1\|4311370_4311835_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176868
NC_016609.1\|WP_049815553.1\|4322530_4323064_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274376
NC_016609.1\|WP_014219662.1\|4314742_4315141_-\|ester-cyclase	unknown	unknown	gnl\|CDD\|377824
NC_016609.1\|WP_041348822.1\|4316992_4320325_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014219673.1\|4332893_4335908_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014219658.1\|4312222_4312840_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_016609.1\|WP_107685567.1\|4329072_4331274_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269892
NC_016609.1\|WP_014219655.1\|4310773_4311364_-\|YdeI/OmpD-associated-family-protein	unknown	unknown	gnl\|CDD\|226851
NC_016609.1\|WP_014219665.1\|4320356_4321958_+\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|372283
NC_016609.1\|WP_014219670.1\|4327968_4329042_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NC_016609.1\|WP_014219663.1\|4315303_4316515_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NC_016609.1\|WP_014219674.1\|4336063_4336966_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_016609.1\|WP_133055270.1\|4323060_4323480_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014219675.1\|4337070_4337226_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014219657.1\|4311836_4312157_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_016609.1\|WP_014219669.1\|4324306_4327861_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014219660.1\|4313475_4314558_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|271234
NC_016609.1\|WP_014219659.1\|4313096_4313369_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340560
NC_016609.1\|WP_014219672.1\|4331358_4332873_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_016609.1\|WP_014219668.1\|4323680_4324334_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014219656.1\|4311370_4311835_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176868	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.39539e-31
NC_016609.1\|WP_049815553.1\|4322530_4323064_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	1.20073e-32
NC_016609.1\|WP_014219662.1\|4314742_4315141_-\|ester-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	1.22563e-23
NC_016609.1\|WP_041348822.1\|4316992_4320325_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_016609.1\|WP_014219673.1\|4332893_4335908_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_016609.1\|WP_014219658.1\|4312222_4312840_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	3.9002e-28
NC_016609.1\|WP_107685567.1\|4329072_4331274_-\|hypothetical-protein	gnl\|CDD\|269892	cd14791, GH36, glycosyl hydrolase family 36 (GH36). GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.	4.04126e-09
NC_016609.1\|WP_014219655.1\|4310773_4311364_-\|YdeI/OmpD-associated-family-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	2.81337e-79
NC_016609.1\|WP_014219665.1\|4320356_4321958_+\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|372283	pfam12741, SusD-like, Susd and RagB outer membrane lipoprotein. This is a family of SusD-like proteins, one member of which, BT1043, is an outer membrane lipoprotein involved in host glycan metabolism. The structures of this and SusD-homologs in the family are dominated by tetratrico peptide repeats that may facilitate association with outer membrane beta-barrel transporters required for glycan uptake. The structure of BT1043 complexed with N-acetyllactosamine reveals that recognition is mediated via hydrogen bonding interactions with the reducing end of beta-N-acetylglucosamine, suggesting a role in binding glycans liberated from the mucin polypeptide. Mammalian distal gut bacteria have an expanded capacity to utilize glycans. In the absence of dietary sources, some species rely on host-derived mucosal glycans. The ability of Bacteroides thetaiotaomicron, a prominent human gut symbiont, to forage host glycans contributes to both its ability to persist within an individual host and its ability to be transmitted naturally to new hosts at birth.	0
NC_016609.1\|WP_014219670.1\|4327968_4329042_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.50127e-145
NC_016609.1\|WP_014219663.1\|4315303_4316515_+\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.9518e-24
NC_016609.1\|WP_014219674.1\|4336063_4336966_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.06212e-30
NC_016609.1\|WP_014219657.1\|4311836_4312157_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	8.87911e-18
NC_016609.1\|WP_014219660.1\|4313475_4314558_+\|glycosyl-hydrolase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.06277e-06
NC_016609.1\|WP_014219659.1\|4313096_4313369_+\|MoaD/ThiS-family-protein	gnl\|CDD\|340560	cd17040, Ubl_MoaD_like, ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins. Ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins This family includes ThiS, MoaD, CysO, QbsE, and their homologs, which are structurally homologous to ubiquitin (Ub) and may function as the sulfide donor for the biosynthesis of thiamin, molybdopterin, cysteine, thioquinolobactin, and other sulfur-containing natural products. Ub is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Ubiquitination is comprised of a cascade of E1, E2 and E3 enzymes that results in a covalent bond between the C-terminus of Ub and the epsilon-amino group of a substrate lysine. Like Ub, small sulfide carrier proteins in this family are adenylated at a diglycyl C-terminus by specific activating proteins. The adenylated C-terminus is subsequently converted to a thiocarboxylate, serving as the sulfide source. Those activating proteins are diverse and show little sequence similarity. This family also includes the small archaeal modifier protein (SAMP), including SAMP1, SAMP2 and SAMP3, which are Ub-like proteins that function as protein modifiers and are required for the production of sulfur-containing biomolecules in the archaeon Haloferax volcanii. SAMP1 and SAMP2 are involved in sulfur transfer during molybdenum cofactor biosynthesis and tRNA thiolation much like MoaD and Urm1, respectively. They can form covalent conjugates with their protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. SAMP2 also forms homo-conjugates through the intermolecular isopeptide bond between the C-terminal Gly and the Lys58 side chain, a feature that likely resembles polyubiquitination. SAMP3 conjugates are dependent on the Ub-activating E1 enzyme homolog of archaea (UbaA) for synthesis and are cleaved by the JAMM/MPN+ domain metalloprotease HvJAMM1.	1.64858e-11
NC_016609.1\|WP_014219672.1\|4331358_4332873_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.6577e-50
NC_016609.1\|WP_014219668.1\|4323680_4324334_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	5.34105e-35

>NC_016609.1|WP_014219665.1|4320356_4321958_+|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MNKQHKYLLYITTATILTSGCTKNFEDYNKNPYGASNDDLLPDYGLVVGQLKEAERSIYVYQPAWVTQLQQNLMGDVFGGYMMSPTPFRGNSNNMNYDLVDGWNLYALNPAYSSPEASVMAPLANVESITKTPAPDLYAMAKILKVEAMHRVSDIFGPIMYSKYKVRAEDGGYDYDSQQDAYSNFFKDLNEAITILTPLRTQKPTPTFVNADLVYKGDYGKWLQFANSLRLRLALRIVKADAAKAKTEGEAALANAGGLLSKADDNFSIDIGATVHPLNTISGAWGDIRMGAPMESILKGYNDPRLPKYFIPAVDSAVLHQFKGIRNGIDIDAKTRYQGYSALVDLPSKLQLMTAAEAWFLKAEAATRGWANAGTAKDDYESGITTSFTQYGLNASTYINDAVSTPAEYIDPKAITAGQNDIKTGSQWLSTITIKWNDADAFETKLERIITQKWICVFPDGQEAWSEFRRTGYPKLFPVVINNSAGKISTTVFVRRINIPPDEYLTNPKGVERAIKTLKGPDNGGTRLWWDVQ
>NC_016609.1|WP_041348822.1|4316992_4320325_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKLTSFLLFVTCLHAAAHTSGQTVTLSLKNVPVQKVFKAVSRQTGVSIVYCENLFEGLEPVTISVKNATIKDVLQQCLTGAPFDYNVQGNTVVIRKKSAVEIKGDINTPPPPPVPIKGKIVNDKGEPIAGANVQVKGTKKGTSTNPDGEFTIDADKGDVLIITNIGYAARQITLTDTKSLNITLTVNSQQLGELVVTALGIQRRQKSLTYSTTKVNNAELTTVKNMNPINSLNGKVPGLQINPSSSGMGGSVRVILRGQKSTRENQPLYVIDGVPLTNFSTAQPQNLWGESGGVNTPGRDAGDVLSSLNPEDIESMTVLKGASAAALYGSQAGNGVIMITTKKGRSGMAKVDFSTAVTFERPMYTPDLQYNFNQTNADNIYSWGPAGSNPNHVKDFFKTGKTFINTIAFTAGNEKAQTYFSYSNTNNTGIMPTNEFKQHTFNFRQTSKFFNDKLNVDANIIFSTQKTNNRPASGLYYNPLTGLYLFPRGLDFNNYKNNFEYFSPTRIMNLQNWWNINPDKDLGGADNQQNPYWVLNRDVNLGKKDNLFASLTLKYPITKWLSVQARGSMNRNYDNYELHANASTQITLADYNGRFTYDRLERTLLYGDVILSGNLHLTDKIGFNFNAGSSINDQKQDRTYIDSKGADLAYANIFTLGNLNLSPALMVQPTGLRRQVQSVFATGTFDYDEKVYLDLTARNDWSSTLAYTPKAKSGYPYFSAGINTIISELAHLPQFINYSKVRLSFAKVGNDVEPFSTNPTNTIQSGNVQTVQASPYMGAYLKPEDARSFEIGTEWKFLNNRLSLDFTWYKTNTKNQYFDFAAPRGSGYSRFFVNAGNIQNQGIEAMIGYDVLNKGDVKWNTSVNFTRNRNKIVQLLPELGGMYELTLAGVNSYSLRIREGGSYGDIYGIKFLRAPDGSIVVDDKGKPQANGFGFVGNPTPNFLAGWNNSVEYKNFVISALIDGRFGGKVMSITQAVLDEYGVSKVTADARNNGGVHIPATMLNGSKWSGAIPADVFYTTVGGRAGISEYYMYDATNIRLRELSVGYKLPSKSTIIKDMRLSLVARNLFFIKKEAPYDPELSMSTGNGLQGIDVFSLPSTRSMGLSFRCSF
>NC_016609.1|WP_014219663.1|4315303_4316515_+|FecR-domain-containing-protein
MDKQAFLRMLDKYQDGSASSAEKTLIEEYYRRLELAGKTELSAEEEIALRQAMYKNITAGMVERDTPVVPIRRKNYSLAAAAAALLLVLGAGSYYWLFKEHTTQPGNNKLAKAKHHDLPPGRDAATLTLADGRTIVLDSASGTISKQGGATVINLNGQVSYAKAGDKNEQAPVVYNTITTARGNQYQLILADGSKVWLNSASSLRFPTAFTGDKREVELDGEGYFEVVKNAAKPFHVKTSAQDIEVLGTHFNVNAYKDEETIKTTLLEGRVKVNSAIPDKSGRAGNPRQAGAGWQSAILKPGEQSSVSQSSQTSQTISVQTVDIDQVMAWKNGWFEFDNTDIKTIMRQISRWYDVDVRYEMKPDNETYGGRISRNLNLSNILKMLETYGVHYRLENKTLVVVK
>NC_016609.1|WP_014219662.1|4314742_4315141_-|ester-cyclase
MNTLQEKNKAVVTRFNKEFIEQGNIQVFEELVAAGFVNRSAATLNIPAGRDGIKDYIVEVLHKALTDVKVEIFEQIAEGDTVVTRKAISGIQVGEFLNNPPTHQRITMHCIDIVKLKDGQYVEHWRYGQVVC
>NC_016609.1|WP_014219660.1|4313475_4314558_+|glycosyl-hydrolase
MRSTLLLGTRKGLIAYRFQNGKWTMESCSFEGVPVSIAYADPRNGTWWACQDHGHWGVKLQRSKDRGKSWVEVAAPAYPEGEEVKDGMPATTRYLWSMAHGGRNYTSRLWIGTDPGGLFVSEDEGNSFQLVESLWKHPTRKTGWFGGGRDLPGIHSIVVDPRNEDHIHIGISCAGVFETVDGGKSWAIRNKGMNADFLPDPTVETGFDPHIVVAAPSNPDYLWQQNHCGIYRSTDAGKNWIDISEPNGPARFGFAIAVAGDNPDQAWVAPADSDVNRTAIQSALVICRTDDGGKTWKQLRNGLPQEGCFDIVYRHALVNDSNAVVFGTTTGNLFFSPDRGENWQVINNYLPMIYSVQFAE
>NC_016609.1|WP_014219659.1|4313096_4313369_+|MoaD/ThiS-family-protein
MALVKFTYALKRFFPKLTDTTASGKTIPAVLQEIEASYPGVTKYVLDDQGRLRQHVNIFIDGVMIQDRAKLSDPFKENSEIYIMQALSGG
>NC_016609.1|WP_014219658.1|4312222_4312840_-|sigma-70-family-RNA-polymerase-sigma-factor
MTRTPLDSHSAQEDTSLIVAIRSGDYDAFTLLYNKYIQPLTQYGLKFMADLPAVEDCLHDVFVWLWANRHKLDMHTSVKSYLFKAVRTTMLHWLQKQNRLRGLNPGDEPGYLFELQLTPETRVLDNESQRQLRQQIEGVLTNLTAKQKEVIYLRYYEGLNFEEIARNMNLSVKACYKLMGRAITILREKIPGSLVLLIILLVLVA
>NC_016609.1|WP_014219657.1|4311836_4312157_-|winged-helix-turn-helix-transcriptional-regulator
MNLRRDVFQAIADPTRRAILLLVASQSMTAGAIAANFDTARPTVSKHLQILTECELLEQTQNGREIYYHINANKMKEVDDFVENFRKMWDDRFNKIESIMKKYKSK
>NC_016609.1|WP_014219656.1|4311370_4311835_-|SRPBCC-domain-containing-protein
MERKTKINAETGKQELVITREFDLPLDLLFRAYIEPEIIEQWMGTKVLKFDCKKHGSYQLETTDPKGNKHGFNGVIHEYVPEKKISRTFEMENTPFGIQLEIYEFEPITDETSKLTMHVIYESVEQRDQVLKLPFAQGINMAHNRIEEVLRQLK
>NC_016609.1|WP_014219655.1|4310773_4311364_-|YdeI/OmpD-associated-family-protein
MATSIMNPRVDFFFKSVKWHDEYEQLRMIALDSGLKEELKWGCPCYSLDKKNIVLIHGFKDYCAVLFFKGALLKDPKGILIQQTKNVQSARQVRFTNVKEIIKLAPTLKKYIKEAMEAEKAGLKVELKKTTDYAVPEEFQVKLNKMPALKRAFKELTPGRQRAYLFYFSQPKQTKTRESRVEKYLQQILNGKGLDD
>NC_016609.1|WP_049815553.1|4322530_4323064_+|sigma-70-family-RNA-polymerase-sigma-factor
MLSQHDELAFAEIYNRYWKLLYSSAHNILQVKDAAQDAVQEVFISLWRRRADIQVDALQPYLHQAVRFQVFKAIRAEKTDQQFFNRLALITQDILFEDPMLFKELDTLYQQLVQDLPPDEQEIFRLHRDSGLTYKQIAEQKNISIKTVEKKMSRSLRELRFGLDDALVVLITIHLLS
>NC_016609.1|WP_133055270.1|4323060_4323480_-|hypothetical-protein
MHRALDLDSMRMSEEMGLEERMGESLNLGDNEDGGWEIYVFAKKQGEIYRIYWIGTQKNVWVSKTFYYENGMLVCGEMTVLRQEPHHNTEYTVKEYYWKNKRLAKITRNKFPVIEDRSFIPVSLLKLGKKIYDLNNSKT
>NC_016609.1|WP_014219668.1|4323680_4324334_+|HD-domain-containing-protein
MNKNEIIIQTVNHVKQTLANAEGGHDWWHIHRVWKTAQHIAAAEQADELVVALGALLHDIADSKFHNGDETIGPRVAREWLHSLKVEEPVIEHVENIITHISFKGGNHHQPFKSKELDIVQDADRLDAIGAIGIARAFSYGGFKNRLLYDPAVPANLKMTKEEYKSNSAPTINHFYEKLLLLKDRMNTSTGRKLAMQRHEFMENYLKQFYGEWDGAL
>NC_016609.1|WP_014219669.1|4324306_4327861_-|hypothetical-protein
MNKKVLKKAGLASLVIAIVTILSLIFIIKYRIKSVIREVVRSETNGVYKLNFSKISIDFFKGRVKLNAVDFKPVSSDLKDYRFTISHLYFSLASWNQLFFHRKLFVDSLQINDPVITIFQQPVQKSNNELGPFQEIFKSLRNISEIFKVHVLEINRGNMTIYRETNDAPLVISNINFRVENFGQQQKQNTHLRFADNVTLRVGKQQWQFPSGQIIKFENLFFLGNDQTFQVDSCAITTAPDSRGQRTSLFAEKFLFRTNEIATVFERNELNLDTLYCKSPVLSVAIPADKKDNDTVSELNESIHQLPGNINIKFINIENGQIHLTSSDGKRSYTGKKTNFKIYGLNIGRNPVPYIRAGKIDLNLHEISFATRDSLYLLTVNEFRFDSNNLVCTNAYLKPSPKAKGYLKGIDLPAFTLIDISLNDLLEKRLKALVAVIDNPQFFFGSRAARKKAVESGIPVNKFYNTLKSLAQLVDVHWLTIKDGALNYTPLGSSTPELSLNKIDMEINLVGMLNSASIQETRQSIHALRIGSINLAKDNISAGLNNFFIDGSREIGTLGSLAVQLPSGIKLNAANLYWEGFSWEDFIRDKSIYIDTLNIPTIGLNAQVLPGGSGEIRSGLLPVTINRLKIGHSVIRLKTINNTAINATINHISLQGLQAAGRFVSWQNLDARADSISFRDDRRQIAVQRLHYSALGESTIQNISYTDSACRIKSPEIRFQVHLFNSHPDELRIGKLDIPRAYINYRPVSNSLSVACRFALHADDGVIGKSNGGAIAFDNFFLETDSLSLVKPGPHGLLEISNGSGGVAGYPLAINLAGNNPHLKNIINSVHITGGRLFYSDSTTIASVGNITGNGKTGALAFRDVAVNPRITLETFIKTTVWQKDYLTFHCDSIGLHQVNYRALLDDTSLAIRSVYLQHPRVTTFRNKNTAFLHGIEKLMPTKLLAGMKAPVRIDSVQIKGAVVNVQEVSAITKRKSIVPLSNLNGTITNIVSRPGEQDSLVLDVSGRVLEYEIRTLRYAESYTDSLSGFTMQYGIAPMQLTHLTKLTNPLSAIAITEGRADTLYAKLTGNKYASVGQINFYYHGLKVRLLNKEDSLKRSVFLSLETLLANGLIRSNNQNPARMFFIRDREKFVFNYWVKTLFSGFVTSTGVKRNRKYQKMYNEAEGKYTLPPASGYSAPSHSP
>NC_016609.1|WP_014219670.1|4327968_4329042_-|galactose-mutarotase
MIITKPTVSTTTVWPRTGKGNEPVVMIVLQNGDITLECSNIGCSIVAIHTPDRHQAKKNIVAGFKNWELYTVNKDYLGCVVGRFANRIAHGAFSLNGKKYQLTVNDAPNHLHGGWNGFSRKVWQVAGTIENENECGVEFTYVSPDGEEGYPGNVLATVQYTLNNNNQLQITYRATTDKSTPVNLTNHSYFNLTGFNEPHILDHYLQIVAEEYTEKSAGNTPTGAMASVYNTALNFTSPRLIGSHINCFPDDMGYDHNFILSRIASKKIIKAAVLSEETTGRMLTVYTNKPAIQVYTANHWNGAIIGRQGVAYRQHGAVALETQYWPDSVNHVNFPNTILHPGEEYTSTTVFEFGVMG
>NC_016609.1|WP_107685567.1|4329072_4331274_-|hypothetical-protein
MMMSKKYILFLLLAPVVAIAQLKQATADSVVISNDYVKVVANLHSGKVHYRFTSGTVFENTVAYVQDVKSGLLLSTAFAGHQVTTDDISDPLGKGICLNLVHEDAGQPVRLTQYITVYEKQPFILLSTVATAREVGAMVETRNISPLTVLPAMQGKITTPGKNVLLTDYPFDNDNWVDVISRHWGPEAISGISYELASAYDEQTKNGFAAGSLVHDFWKTGISYGTGAFSNRIDSFIVYGGAATKDDPSKPDSYGGKDGTHDYVQHGTQMGASVASPLIYLSASPDVRNDLLQFGNTIKKIAGFSNWKQSAPFYWNSFGVEGVLGYEKVMMPVDVAKVSDFIHSMENFNKTTQPVLSIDSYDQNIYSTEVLQSINRYGKKKGQQLGFYFIPFVLWTWKNGINDATLNTGGNLRDVILLDDNGKYVPYKDGDWGAFPIDPTHPYTRNYIIGQLQKAKAIGAKFIKIDFLSAGALESSRRYDPQVRSGIQAYNYGMKMLRRLVDSILGPDIFITQAISPLFPNQYAHTRFLSTDVYSHLRNSQPGFPHYGSTCGSMISATHFWWTQGTLWPYTNMDVVVMKNFQKNKDLTAQEVKVRLFSMMTLGSILGDGTDYRNKEAAARARQFLNNAAICDFFSRPRAFTPLRFPVGNGQSQQLSFYLPGDTILVSAFNFDTEKPFTETFVQAELNWPDRAYSLHDLLTGQEIGKIEKGQPAFTVNVPVKDAVMLQLVPSEK
>NC_016609.1|WP_014219672.1|4331358_4332873_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MFAIIYFIKQRFTLTLLFILLVAAGCSKKLDITPETFVSPEDLYKDEQGATAGVTGIYRKMMELNNGDYYFVGIVGTDEGKTTSFVPTWGGYWQHYDGINSYNGLMGAQNQLVQGTWNSLYKGIVNANIAIKYIPSSAASQTVKDRLLAESKFLRAVFYFKLVQFFGGVPLPTEQPDAVADANGGKPRSSEDEVYALIISDLNFAASTLQPKGTAAVGHANKEAAQTLLGKVYLTRKDYANAKNTLQPLMTLTNVALMPNYADLFNEKNENNIESLFEVQYSNENGNTNGQANTLGGWHIENTYPGGGGHVVIPTDYYDTCFENGDARKDASIRYKFYDKNGNEVDYWWWADVTKPHVKKYDITQGQSLNGGLSSRNLYYLRYADAILMYAETLNELNDVTGALTYLNKIRTRAKLANWETVLGHTPAQQELRDELLKERMRELGFEGWRWCDLKRSGKLLTQTKAYNSDAAPNMTSKNLLFPISSREFELNRALKPGDQNPGF
>NC_016609.1|WP_014219673.1|4332893_4335908_-|TonB-dependent-receptor
MQKLTLLLFVSFITCLSVRAQDHLLKGKVLDAESKTLLPHASVRAIGDVSSQISANDGTFSLTVKGKIILVISYTGYKSQTINVPDSQTTIDVLLQKETDALGEVVVIGYGKQAKKDVTSAISSISGKELKELPVTNINAALQSRIPGMQVTNAGHEPGAGTNVRIRGINTITQGTGPIYVVDGVVVTYDLREINPNDVESIDVLKDASAAAIYGSRAAEGVVIITTKRAASGRTTVSYDGYYGVQKMIKTYDFVDNIDDYVKMRRAGLSDEDPVAWPMGPGIDTLLFNGDERRNMAARKWTDWVGLVTHTAPQQSHTLSISNGVGKNKLYLSGNYLNQDGIIKGSNFVRYSLKANVESEINAKLKIGVNTNFSHIKNDVTSNEVYYNAVTISPLMSAYDSAGNPSANIDPSSGNLLFNNPVTLTQSPVHTVDDRFLGNIFGEYKIIKGLTFRSSFGIDVYKDQRFEYYPRTTSTGFSKKGVAKIQNFGWRDYLWENTLAYSYSPAADHVFDFLAGATYQQRRQEWNYEEASGFPTDDLTYKNMSLASSRDNISSDYFNWSVASLLGRVIYKFKGRYILNGTIRRDGSSRFGAENRYGYFPSVSGAWRVIEEPFMGLRVRSVINDFKIRAGYGVVGNQEIPIDAIYTRMNPAAYPFTGTAPQTSGFQLGTGTQGNPGLKWESQQQFNTGFDLAFAKNRVKVTFDYYNKNIHDLLLNNPLSPSQGFDNKWINVSEMNTRGIDLDLKVSIIETHNFNWQMDINWSKFRSKITKLLPGVDSLSPYLKVGEAPNSLIVDYVYDGLYQKGDDFSLNPGARPGDVRVKDLDGNGKINQYDRTIVGRTTPKGWGGIWSYWRYKQFSMTVFANYTYGQKLANKAYQDYLYYSSKTATRTLKEGLNYWTPDNTNTDVPRPNQFGRSLRALQSGTSSFMVQEGDFIRVRNITLAYDIPSKLLTKAKINSIRTYVQVVEPFLFTKYKGIDPEIGVGQYDIYPRYRTFLFGVQASF
>NC_016609.1|WP_014219674.1|4336063_4336966_+|AraC-family-transcriptional-regulator
MPQRRSRKRQGFEGQKLIVVPKKIASGFLTKDAITKQIYITDIGYYPKAANHYFERPHGINQHIIIYCVEGRGWVTINKQKMDISPSHFIVLPANTPHKYGAMETDPWTIYWVHFKGDIATYVVNLITNHSQNYLPYLSFNENRIKLFEEICFHFEQGYSADTLRYVNMIFYHFLSSLLYEEKYNQAVKAPGKDAIALTIENMKTKLSTNLSLNDLARAAHMSVTHFCNLFRIQTGFSPIEYFNHLKVQQACQTLAFTPRAIKEIADELGFSDQYYFSRIFSRLMGMSPSEYRKRNRTME
>NC_016609.1|WP_014219675.1|4337070_4337226_+|hypothetical-protein
MAKANGTQLSAPRRQAFEALKSRQVKKHFSPVLNSLTVLFTAPTKMYCCVP

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Crispr_ID: NC_016609_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_7

5240684-5240896

Orphan

Consensus_repeat	Method
AACGTAAAAAATAATTGGCGCGGTACCGTTTGCGTTTATAAACGATAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016609_7

>merge|NC_016609|7|5240684-5240896|CRISPRCasFinder
ATGATAAAAAATAACTGACGGGGTATTGTTTGCGTTTATAAATGACAAAAATTCGCTGGCGGGCGTCATTTCTGTTTACAAAACGTAAAAAATAATTGGCGCGGTACCGTTTGCGTTTATAAACGATAAAAAATCGCTGGAGAACGTCATTTCCGCCTACAGAACGTAAAAAATAATTGGCGCGGTACCGTTTGCGTTTATAAACGACAAAAA

>NC_016609|7|7|5240684-5240896|CRISPRCasFinder
ATGATAAAAAATAACTGACGGGGTATTGTTTGCGTTTATAAATGACAAAAA	TTCGCTGGCGGGCGTCATTTCTGTTTACAAAACGTAAAAAATAATTGGCGCGGTACCGTTTGCGTTTATAAACGATAAAAAATCGCTGGAGAACGTCATTTCCGCCTACAG
AACGTAAAAAATAATTGGCGCGGTACCGTTTGCGTTTATAAACGACAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014220364.1\|5245517_5246618_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_016609.1\|WP_014220352.1\|5234262_5234649_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_016609.1\|WP_014220363.1\|5245112_5245418_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NC_016609.1\|WP_014220353.1\|5234635_5236057_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_016609.1\|WP_014220351.1\|5232728_5234198_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_016609.1\|WP_014220358.1\|5240988_5241324_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185668
NC_016609.1\|WP_165761239.1\|5229734_5232689_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NC_016609.1\|WP_014220366.1\|5247585_5249487_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NC_016609.1\|WP_014220360.1\|5242430_5242862_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_016609.1\|WP_014220367.1\|5249488_5250100_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|179895
NC_016609.1\|WP_014220361.1\|5243005_5244301_-\|epoxide-hydrolase	unknown	unknown	gnl\|CDD\|377658
NC_016609.1\|WP_014220354.1\|5236058_5236586_-\|YfiR-family-protein	unknown	unknown	gnl\|CDD\|379335
NC_016609.1\|WP_014220365.1\|5246614_5247577_+\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NC_016609.1\|WP_014220355.1\|5236619_5238821_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_016609.1\|WP_014220362.1\|5244460_5245096_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_016609.1\|WP_014220359.1\|5241411_5242362_-\|iron-sulfur-cluster-repair-di-iron-protein	unknown	unknown	gnl\|CDD\|274701
NC_016609.1\|WP_014220347.1\|5227190_5228480_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|377406
NC_016609.1\|WP_014220356.1\|5238942_5239347_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_016609.1\|WP_014220348.1\|5228688_5229294_-\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|274376
NC_016609.1\|WP_014220357.1\|5239715_5240321_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014220367.1\|5249488_5250100_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|179895	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional.	3.71578e-55
NC_016609.1\|WP_014220352.1\|5234262_5234649_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.20215e-23
NC_016609.1\|WP_014220363.1\|5245112_5245418_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	8.64655e-26
NC_016609.1\|WP_014220353.1\|5234635_5236057_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.27783e-34
NC_016609.1\|WP_014220351.1\|5232728_5234198_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	1.26578e-42
NC_016609.1\|WP_014220358.1\|5240988_5241324_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|185668	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional.	1.1499e-06
NC_016609.1\|WP_165761239.1\|5229734_5232689_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_016609.1\|WP_014220366.1\|5247585_5249487_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NC_016609.1\|WP_014220360.1\|5242430_5242862_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	6.55334e-26
NC_016609.1\|WP_014220361.1\|5243005_5244301_-\|epoxide-hydrolase	gnl\|CDD\|377658	pfam06441, EHN, Epoxide hydrolase N-terminus. This family represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group of functionally related enzymes that catalyze the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarization of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites which arise during the biotransformation of foreign compounds. This family is often found in conjunction with pfam00561.	1.15022e-53
NC_016609.1\|WP_014220354.1\|5236058_5236586_-\|YfiR-family-protein	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	4.69229e-49
NC_016609.1\|WP_014220365.1\|5246614_5247577_+\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	7.78451e-56
NC_016609.1\|WP_014220355.1\|5236619_5238821_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.60792e-29
NC_016609.1\|WP_014220362.1\|5244460_5245096_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.50578e-59
NC_016609.1\|WP_014220364.1\|5245517_5246618_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.62505e-66
NC_016609.1\|WP_014220347.1\|5227190_5228480_-\|FecR-family-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	8.7315e-20
NC_016609.1\|WP_014220356.1\|5238942_5239347_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.08022e-22
NC_016609.1\|WP_014220348.1\|5228688_5229294_-\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	1.90203e-46
NC_016609.1\|WP_014220359.1\|5241411_5242362_-\|iron-sulfur-cluster-repair-di-iron-protein	gnl\|CDD\|274701	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.45606e-74

>NC_016609.1|WP_014220357.1|5239715_5240321_-|hypothetical-protein
MDQISTKYKKSEGELVSTSERVIKEMENNPDYPTPPAALAELKKELPDFRLAIADAKGGDKKMVSVKNDKKAIILALLQELAAYVTVTSKGDRTLLLSSGFEVTAARAGTPDPAIKELVVELGGPGEATIRTRKVTGVKAYIHQFTTEAPGLNTVWVQEGSSQGNHTFTGLTSEKRHWFRVVAIGFGKQRAISPIVTRVIQ
>NC_016609.1|WP_014220356.1|5238942_5239347_-|response-regulator
MNKRPVEFLPINKILLVDDDATANYLSKELLESLQAANEFETAENCLRALELIRQSDCADVIFLDIKMPGIDGFDFLERLKKLSLEKKIKVVMLTSSVRPEDKLRAFSYKAVIEYLEKPLTSEKVQMIATTYLN
>NC_016609.1|WP_014220355.1|5236619_5238821_-|TonB-dependent-receptor
MKRIIAFVLCMYAVSIQVNGQKKDSVSSLLHLSIENLMNIPIYSASKVAESTFDAPLSSSVVTKEEIKRSGCTSIMEALRLVPGVIVREQTNGNYDIHIRGLDNIPPNAGFLFFTSSTALVMIDNYPVYNYLHGGTFWETLPIDLNDVEKIEVVRGPSAALYGPNAVSGVINIITRKALKEGLYAVANALAGSYNSVSTNTSLGYNQGKISAVLSGNFQNRNRTQSTYYDEPAQQYVPLDSVTAVKRNPLGPANINERYPNPDLAMRKYGANGFVNYDPAENIRFSAAFGIQHSEVQKEFATDSYSAYLSTAKADTRYANIKGDINNWLVQLCYVDGTQFPLLGFDRWRWHYNTFDALVEYKIVPIKNLSVTPGLIYRQAIYDDSKYVNTAIKEGLWSGRAESVTNAFSLRADYKLFDQRLRLVGGARADKFNYPDRFYYSWQLAATYKINDRNLVRFVQSKAYRTPLIIDLFSNLDITGPLGGRTYLLEVRGNKNIKLLTSTLFEAGYRVQPTDNLGVDLELFTTKTRNFSYTIFESGTFNPTGPLAFQGLADLNNLTVYAKQWGGTLSVNFIAGDWQFKPFVTLQKTMLYDYSQYANSPDAPPLPSNNNDPATYNIYSGMGTKIKHRATPACYGGAYINWKAGDRLNINLSPWFYSDQTQLESSNLTYNDGERGVEHIKGKVMLNAAVRYAITKKITLSLSGRNCFNNREREFYRADAPALMVFGGASFEF
>NC_016609.1|WP_014220354.1|5236058_5236586_-|YfiR-family-protein
MRNFRPITTILFFTVCSFSIWAQKDRASEYNLKAAFIYNFTRYIEWKAEAGENEFIIGIIGSSPIDDPLGEIVKTERVDNKKIAIKRFNKPADISFCHILFISQSAGVALDDILTKTSGKGMLVISEQNGYAELGTAINFVIINRKLKFEANVRAINSAGLTASSQLLKLAIIIK
>NC_016609.1|WP_014220353.1|5234635_5236057_-|HAMP-domain-containing-protein
MIAFRNLSIRNKLIIIQTATAFIVVLVCCIFFVLNDIKTFKDEARRKMYSLARIVGENAASTVVFLDQDAATQILMKLNKEPDITQAVVLDKNGKLFARYAREQPGTEKDIMAADDGKLLVVRYKFYQEKEFMGTVVLYGELNELDKIIASYIKVTVFVLLTALITALLLSAFLQRSIVHRLLTLVSKTKEIASTGNYALRVKGAGNDEIGILSGGFNKMLEQIENMNRYLKENNEALKTYSLSLERTNKELEEFAYISSHDMKSPITSLIGMLTLIQQKEAIQPGKQHLFELAVNSARQMQKTINALNEIIAFRKTLKVEREKINLIEALEEVKLRIYDMITSSGAIILADFTKCRFIYYPAVHLKSIFQNLLTNAIKYKQNSHPPKIDITTYCEDKFVVLEVKDQGIGIDMNLYKDKLYGLFQRFHTHVEGSGIGLHMIYSIVESYGGRIYIESEVNKGTIFKIYLANGTF
>NC_016609.1|WP_014220352.1|5234262_5234649_-|response-regulator
MAHFNKVLLVDDDDATNFLASLAFKNLAIAGEIAVASDGLVACEWIQQNNCPDIIFLDIRMPRMDGFDFLDNFTRMNTCKQVKIVMLTSSLRAEDKKKAFTYNAVVEYIEKPLTETLIQKIANTYFND
>NC_016609.1|WP_014220351.1|5232728_5234198_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKKSIFYIAGACLMLMASCKKELKEKPYSFLTPDNYYTNATDAQTAVNGIFNVLQQQPSYQRTVWLIGELPADNLMPIPTTTSERLELSNFNWTPGNGEILNWWQTSYQAISRANDVILYVPAIKMDTTLRNHLVGNARFLRALCYFDLVRNFGDIPLLLRPILTASDTLLFPSRTAASEVYKAIINDLKFAETNCFAESKITKTYSTLKGMASSGAAATLLAKVYLQRGSTTFADAQDNQNALAELNKVIASKEYSLFPNYSDVFDNAKKNGTEHIFSIQFGPGNNGAGSNIILRMLYPSNLGGAGPFVADSNFFKTGYSADDIIRRKWNMADTVGTQRVWPPFIYKYRDPAYASGSNNSNVNWIVLRYADVLLMQSEALNNIDATDITKFNGVNAIRARAGLTVASQLNFTNTVSQNDFIDSLVKDRARELFVEGHRKYDLIRLKRYKQVMAASRGITVPDYRFLLPIPQTERDVNKNLSQNDGYPK
>NC_016609.1|WP_165761239.1|5229734_5232689_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MPGVNIQLKGTNIGTFTDTKGVFTLTIPDNKQAVIVVSAVGYNTQEVDVTNNNGEVTVSLTEQVAQLSDVVVVGYGTARKKDLTGSVGSVGLASTDKTPVFGTGQLMQGRVAGVQVTQTNAQPGSSFTVRIRGTNSISMSSDPLYVIDGYAGADIAALNPNDIVSIDVLKDASATAIYGSRGANGVVMITTRRGSAGRKSVTVDAYTGFQQVAHKLDMMNAKQYAEFMNETYANLNPTITTRPFSQAQIDTLGKGTDWQDELFRNAKMSNFNVGFSGGNADSRYYLSMNYFTQDGVIINSNYKRGNLRFNLDSKVSEKIKIGLSSQLSYDNQLRANVNTTGGSTGGTLLDALLFNPGIPVYDNTGAFTYQNGPNNYSIIAGNPVAAAMLNSDKAKNTRLFANFFAEYEPIKGLKIRSSFGGEYRNYRNDVFRPSTTYLGTLNGGGYAQIVTNNNYNWLNENTITYDKAFNKNNALNLVGGFTYQEFKNSSVTSTVTGLSTNNLATDNLGIGGATDGSNTSLNTLASFLGRANYRLMDKYLFTVTFRADASSRFGANNKWGYFPSGAFAWRVKEENFLKDVNAISDLKFRASYGLTGNQEIPNYLSLKQYTSNTYWLGQARVNGFSPNNLPNPDLSWEATKALDLGFDLGILENRVQFTADYYLKKTTKLLYNVLLPVTSGFSSITQNLGSVQNQGIELGINTINIDKKDLKWTTAFNISANRNKVLSLGPYNSQFTGNVSTNLFPGGKTFSSLLQVGKPIGEFYGYEFGGIWQTQDQINKSGTKQKVKPGDPIYKDLNGDSALDGTNDRTVIGHALPKFTYGFTSNLTVGRFNLFVLIQGVQGVNILNENKIEMEAGNAYANKFAYVYTDSWRGEGTSNTLPSAGNTLRRTLGVTSDMIEDGSYMRFKTITLSYDLPLPKLSNVFKSANIYATAQNLITITSYSGYDPEVNSYSNTQGNYTSLNVDYNPYPNIKTYTLGVKLGF
>NC_016609.1|WP_014220348.1|5228688_5229294_-|RNA-polymerase-sigma-70-factor
MPTELSNSEKGLLLQIIDGDADAFAEVYDLYKDRIFAFAFTLTKSKEIAEEATQEVFIKLWERRNQIDTNYPLTPYIKKITYNYIISFFRKVKLDRQLQQNLYNNMEALRNTNEDELLQKELNKLYQQAIEQLPRQKRTAYILSREQHLSYEEIALQMGISKNTVRNHMTEAIQFIRNYITNHTDLACLILAFCLHAKGRG
>NC_016609.1|WP_014220347.1|5227190_5228480_-|FecR-family-protein
MAISKEQLEELYHKYVQNQCTQQELDALINELGFEGEDVQEETIMQLFNATWDGLDVFPGKYQLPALTLPQEITYETPVVSMYAAKRRWMRMAAAASVLLVMGVAAYWLIRTRETKPGTTTIATTKDISPGGNKAILILADNSTIVLDSAANGKLAQQGIATVTKSNGGQLSYSLPANREGSGEAKEVTYNTLRTPRGGIYQLVLPDGSKVWLNAASSITYPTSFPGKERKITIDGEAYLEVVHNAAKPFKVESSGSEVEVLGTHFNVHAYTDEAAEKITLIEGRVKVGRRPSFAKASAGEADGKGESVVLKPGEQAIAIVSPLTTDPADSRHSDKVGNSPLTIEHAPNIDEVLAWKNGLFNFANADIESVMKQVERWYDVEVVYEGARPEGHFRGKIPRNVMASEMLKIIEASGVHFRIENKKIIIMK
>NC_016609.1|WP_014220358.1|5240988_5241324_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTEREKNITLFIEYNGNHQTVETFAGEYRNLMVLIKDQVWVDGMGECGGQARCGTCMVELLNAGENLVVATDTKEAAVIRRMMTTQSIIRLSCQILVDETLNGLKIRVMEP
>NC_016609.1|WP_014220359.1|5241411_5242362_-|iron-sulfur-cluster-repair-di-iron-protein
MILAEILDVTKIEPRLKHPTIFQCFDALSAGETFTILNDHDPKPLYYQLLGERGNTFTWNYLEQGPNRWRVALAKPAPAAKGETVGQIVAKDIRKAEVFKKLGIDFCCGGKKSVKQACEEVGITQEQLEVEMKNFEENSREKAGIEFNTWDLDFLADYIVNIHHRYVRDNATMIKELVVKVANRHGDQHPELVHLSVGVQQCLADLLSHLEKEEQALFPYVKELVAKKKQGARFKTGFSVASPVQAMETEHERTGEELHAFRELTNDYALPANACNSYAFLFSKLQEFEADLLKHIHLENNILFPKALGLEQELAA
>NC_016609.1|WP_014220360.1|5242430_5242862_-|Rrf2-family-transcriptional-regulator
MFSKTCEYAIRAVIFIAQKTVDGSRIGIKEVAAGIDSPEHFIAKILQELSRKGIIQSQKGPTGGFYLDAQSRKHTLADVVHVIDGDQIFTGCGLGLKQCSEAKPCPLHNEFKKIRDAISKLLRTTHLGEFSEQLEQKLVFLKR
>NC_016609.1|WP_014220361.1|5243005_5244301_-|epoxide-hydrolase
MKKITGKLGNGLLTAVFILQGLVSNAQNSTSGSSTGSPTSNEAIRPFKINIPEAQLTDLRKRILATRWPDQELVKDATQGVQLATMKQLASYWATYDWRKTEKKLNALPQFVTNIDGVDIHFIQVKSKNKNALPVIITHGWPGSIIEQLKVIGPLTDPTAYGGKAEDAFDVVIPSLPGHGFSGKPTELGWDPVRIAKAWITLMKRLGYTKYVAQGGDWGDAVTEQMAVIAPPELLGIHTNMAATVPAEINTVLQAGGPEPAGLSGDEDHAFKQLDFFYKNGLSYALEMAHRPQTLYGIADSPVGLAGWILDHDAASLALITRVFNGESAGLTKEDIVENITLYWLTNTGVSSARLYWENKLPFFDIKNIKIPVAVSAFPDELYQVPRSWAEKAFPNLIHYNKLDVGGHFAAWEQPKLFSEELRASFASLRK
>NC_016609.1|WP_014220362.1|5244460_5245096_+|trimeric-intracellular-cation-channel-family-protein
MKEDLLRLIEILGTITFAISGVFAAMQKRLDIFGILIISFITSIGGGTLRDVLLGDLPVKWMRDIETPALILVSAICAVLFRHIIKNFQQTLFIFDSLGLGFFTVLGLQKGIRFGLNPGICVVLGTITGCFGGVIRDILLNNIPLIFRREIYATACILGGIIYFILYSTRFPKEWLDVTVMLVVFMIRFLAVKYNLILPDLYKDKDKKGHH
>NC_016609.1|WP_014220363.1|5245112_5245418_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGDMLSKLQEAQQKMQEGKQKLGSVIIDGEAGNGQVKVSVTGNREVKAISIDNQLMAPDKKEELEDLLITALNRALKNAEDAYEEEMKGLAGGMLGGLGL
>NC_016609.1|WP_014220364.1|5245517_5246618_+|Gfo/Idh/MocA-family-oxidoreductase
MNTISRRRVIKTIATGSGILLLSPKSLFASPTRVKDKLGIALVGLGYYSTDLLAPALQQTKHCYLAGIVTGTPAKAEAWKQKYNIPDKNIYNYQNFDTIANNPDIDVIYVVLPPSMHKEYVIRAANAGKEVWCEKPMALTEAECKAMIEACRSNKKSLAIGYRLHHEPNTQEWRGIVKAKKLGKVTKVNCAAAYRDNRTDHWKQKKEMGGGVLYDMGVYAIQGARLGTNLEPVAIVSATTSTTRPEIYKNGLDETTIATLEFPGGVTADIKTSFGENINFLNITCEKGEIKIDPYSAYNGQNGTSPLGTINHPYSVPYQQAKQMDDDALSILNKKPMLVPGEEGLRDIRIVEAIYKSAATKQRVSL
>NC_016609.1|WP_014220365.1|5246614_5247577_+|glycoside-hydrolase-family-5-protein
MKKLVSVFILVIIIGSGFAQTVKVNGALKVVGTKLVNEKGQPIILRGMSLGWHNWWPRFYNAGAINWLQKDWGCTVIRAAIGVEPDSGYIKYPDWGMEKAKTAIDAAIKDGIYIIVDWHSHHIRQEEAKQFFTKIAKEYGKYANIIYEIFNEPAENTWPEVKAYSIDLIKTIRAIDPDNVILVGSPHWDQDVHIVADDPIKGYKNLMYTLHYYADTHKQELRDRGDYALKKGLPLFISEMGGMSHTGDGPINNPEWMKWIDWSEKNKISWVNWCVTDKKNVTCSVLEPTASSTGPWSMNDLPDWGKQTRSLIRKYNGLRP
>NC_016609.1|WP_014220366.1|5247585_5249487_-|cation:proton-antiporter
MEHSFFYKALVFLGAAVLFVPLAKKSGLGSVLGYLIAGVVIGPSVLGFVGAEGQDIMHYAEFGVVMMLFLIGLELEPELLWKLRKSILGLGGLQVIVSTVCIAGIALLFHFNWQQALALGMIFSLSSTAIVLQTMGEKGLMRTSAGQSAFAVLLFQDIAVIPMLALFPLLATTDILHKPTTDTHDAGTWVSGQPAWLHAAIVLGTIAAVIAVGRIAVRPLLRLVAKTNMREIFTATALLIVVGIAVLMGRIGLSPALGAFLAGVVLANSEYRHELESDIEPFKGLLLGVFFIAVGASIDFGLVGQHLREIIMWVLILIVVKALVMLLLGKVFKMGTEQNFIFSFSLTQVGEFAFVLFSFSFQQGILSLETTNIMTAVVAITMGLTPLIIMLNEKLILPRVGTDEKEERPADEIDEKHPVIIAGFGHFGSTIGRFLRANQIPATYLDLDSDRVDSLRKMGFKVFYGDASRVDLLHAAGADKAKIIVIAISSPEKRLEMIEAVKMNFPHLHMLVRAANRYDAYDLMNAGMLHIYRESLDTSLRVGVDVMSLMGFRKYTAQRLARNFIRYDEANLKRLSAIRNPDEYVVEARKYMEEIESVIQSDRQYLTGESDQSWDPDKLMEEVRASLQEDPLQ
>NC_016609.1|WP_014220367.1|5249488_5250100_-|NAD(P)H-dependent-oxidoreductase
MRKILIIFAHPVLEKSRVHKRLLHYIPQQAGITLNDLYENYPDFDIDVKREQELLLAHDIIIWQHPLYWYSAPALLKQWQDLVLEHGWAYGKNGYALKGKKIFNVITSGGSLTAYQREGYQHCTIHEVMKPYERTAELCHMTYLPPFWVSGTHKLELPQINEYGHKYSLLLQRLQQEELKDEELMQASCLNDLIENTTQNNLA

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Crispr_ID: NC_016609_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_8

5986432-5989880

TypeI-B

I-A,II-B,III-A

Consensus_repeat	Method
GTTTCAATTCCTCCATGGTGCGATTATAAC	PILER-CR
GTTTCAATTCCTCCATGGTGCGATTATAAC	CRISPRCasFinder
GTTTCAATTCCTCCATGGTGCGATTATAAC	CRT
GTTTCAATTCCTCCATGGTGCGATTATAA	PILER-CR
GTTTCAATTCCTCCATGGTGCGATTATAAC	PILER-CR

52 spacers

cas3,cas2,cas4,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_016609_8

>merge|NC_016609|8|5986432-5989880|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTTCAATTCCTCCATGGTGCGATTATAACAATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGCGTTTCAATTCCTCCATGGTGCGATTATAACCCGACACCCGCATAAGTAAACACGCCTTTTGGTGAGTTTCAATTCCTCCATGGTGCGATTATAACTGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATAGTTTCAATTCCTCCATGGTGCGATTATAACTCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACATGTTTCAATTCCTCCATGGTGCGATTATAACACAGATGTCGGCGCTTATGCGCGGGTTCTACTAATGTTTCAATTCCTCCATGGTGCGATTATAACTGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAAGTTTCAATTCCTCCATGGTGCGATTATAACAAACTCGATTCTTCAAGAGTTTCATAACACTATTGTGTTTCAATTCCTCCATGGTGCGATTATAACTACATGCGATTCCTAAAAGATACCGGCATACCTTTGTTTCAATTCCTCCATGGTGCGATTATAACTATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTTGTTTCAATTCCTCCATGGTGCGATTATAACCATATTGTCAGAAGAAGGCGCTTTGGGATCACCACTGTTTCAATTCCTCCATGGTGCGATTATAACCAATTCTCCATTGCCGCCGACCTTTTCAATATTGACGTTTCAATTCCTCCATGGTGCGATTATAACAATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCTGTTTCAATTCCTCCATGGTGCGATTATAACAGCTTTGTTTATTATTTGGCCATGGCTATAATCATGTTTCAATTCCTCCATGGTGCGATTATAACGGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAAGTTTCAATTCCTCCATGGTGCGATTATAACGCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCAGTTTCAATTCCTCCATGGTGCGATTATAACAGCTTATCTACGTTCTCTTCTATAAAATCGTTATATGTTTCAATTCCTCCATGGTGCGATTATAACCCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAATGTTTCAATTCCTCCATGGTGCGATTATAACATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAGGTTTCAATTCCTCCATGGTGCGATTATAATATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAGGTTTCAATTCCTCCATGGTGCGATTATAATATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAGGTTTCAATTCCTCCATGGTGCGATTATAACAAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTGGTTTCAATTCCTCCATGGTGCGATTATAACCTTGGTGGCGTGGAAATACCAGTGACATTCAACTTGTTTCAATTCCTCCATGGTGCGATTATAACTGGAAAGACCCATTAAAAACCTGCCTGATGGCAATGTTTCAATTCCTCCATGGTGCGATTATAACTAGAATGGCACATGGTCATTATTCCTGGCAGATCGAGTTTCAATTCCTCCATGGTGCGATTATAACCGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAAGTTTCAATTCCTCCATGGTGCGATTATAACCTGAATAATGGACCTAGTGTAGGGTGTGTTTTGAGTTTCAATTCCTCCATGGTGCGATTATAACCACAATATCCGTCGAGTTTAGAGACTTGTCTCATAGTTTCAATTCCTCCATGGTGCGATTATAACGGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGGGTTTCAATTCCTCCATGGTGCGATTATAACCACCAAACCCTTTATTTTGAATATTGAAAACCAAGTTTCAATTCCTCCATGGTGCGATTATAACTTTACCAGGCCTGCGCAATGTAGTCAACCAGGTATGTTTCAATTCCTCCATGGTGCGATTATAACGCGGTCAGCGACCCCGACTACGTTTACCTCATTAAGTTTCAATTCCTCCATGGTGCGATTATAACATAGATGAAGACCCGGACCTGTATACCGGTGGTTTGTTTCAATTCCTCCATGGTGCGATTATAACTAATCGTTACCCAAACAAAACCCAAAGTGTACGTAGTTTCAATTCCTCCATGGTGCGATTATAACTTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGACGTTTCAATTCCTCCATGGTGCGATTATAACCGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAAGTTTCAATTCCTCCATGGTGCGATTATAACTGGGTGGCCGTTTTAAAATATTGCTCTAATTCGGTTTCAATTCCTCCATGGTGCGATTATAACAAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTAGTTTCAATTCCTCCATGGTGCGATTATAACCCCTGGCCCGCTATATTGCACGATGGTACTCGCCTTGTTTCAATTCCTCCATGGTGCGATTATAACAAGTCAGCGTACCCCCGATACCTTCAGCACTTTCATGTTTCAATTCCTCCATGGTGCGATTATAACCCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTAGTTTCAATTCCTCCATGGTGCGATTATAACCCGGTATAGCGTAACAGGTACCGACAGGCATGCTGTGTTTCAATTCCTCCATGGTGCGATTATAACTGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCAGTTTCAATTCCTCCATGGTGCGATTATAACTGTATAGGGATAATGTCATATCAATTATGTTTTATGTTTCAATTCCTCCATGGTGCGATTATAACCGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCTGTTTCAATTCCTCCATGGTGCGATTATAACCGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCATGTTTCAATTCCTCCATGGTGCGATTATAACTTATTATACCGCCAACCAAACCGGGCGGAATCAACAGTTTCAATTCCTCCATGGTGCGATTATAACCAGCACCCGTAAATAATACATCGTCTAACAATGGTAGGTTTCAATTCCTCCATGGTGCGATTATAACTTATTATACCGCCAACCAAACCGGGCGGAATCAACAGTTTCAATTCCTCCATGGTGCGATTATAACGCTATCACCAAACCTATTTTGAATCCTAACTCTCCAGTTTCAATTCCTCCATGGTGCGATTATAACAATAGGTGATTTGCGAATCACTTTAAAGGATTATTTGTTTCAATTCCTCCATGGTGCGATTATAACAAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATAGTTTCAATTCCTCCATGGTGCGATTATAACAAAAAACCCGCTAAAGGAGCGGTCGATTATAACAGTTTCAACTCCTCCATGGTGCGATTATAAC

>NC_016609|8|1|5986432-5987187|PILER-CR
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TACATGCGATTCCTAAAAGATACCGGCATACCTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC
GTTTCAATTCCTCCATGGTGCGATTATAACAATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCTGTTTCAATTCCTCCATGGTGCGATTATAACAGCTTTGTTTATTATTTGGCCATGGCTATAATCATGTTTCAATTCCTCCATGGTGCGATTATAA	CGGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CAGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTTGGTGGCGTGGAAATACCAGTGACATTCAACTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAGAATGGCACATGGTCATTATTCCTGGCAGATCGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACAATATCCGTCGAGTTTAGAGACTTGTCTCATA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACCAAACCCTTTATTTTGAATATTGAAAACCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCGGTCAGCGACCCCGACTACGTTTACCTCATTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CATAGATGAAGACCCGGACCTGTATACCGGTGGTTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAATCGTTACCCAAACAAAACCCAAAGTGTACGTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGGTGGCCGTTTTAAAATATTGCTCTAATTCG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGTATAGGGATAATGTCATATCAATTATGTTTTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT
GTTTCAATTCCTCCATGGTGCGATTATAACCGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCATGTTTCAATTCCTCCATGGTGCGATTATAACTTATTATACCGCCAACCAAACCGGGCGGAATCAACAGTTTCAATTCCTCCATGGTGCGATTATAACCAGCACCCGTAAATAATACATCGTCTAACAATGGTAGGTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA


>NC_016609|8|8|5986432-5989880|CRISPRCasFinder
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TACATGCGATTCCTAAAAGATACCGGCATACCTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AGCTTTGTTTATTATTTGGCCATGGCTATAATCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	GGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAT	ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAT	ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG
GTTTCAATTCCTCCATGGTGCGATTATAAC	CTTGGTGGCGTGGAAATACCAGTGACATTCAACTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TAGAATGGCACATGGTCATTATTCCTGGCAGATCGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CACAATATCCGTCGAGTTTAGAGACTTGTCTCATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG
GTTTCAATTCCTCCATGGTGCGATTATAAC	CACCAAACCCTTTATTTTGAATATTGAAAACCAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCGGTCAGCGACCCCGACTACGTTTACCTCATTAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	ATAGATGAAGACCCGGACCTGTATACCGGTGGTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TAATCGTTACCCAAACAAAACCCAAAGTGTACGTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGGGTGGCCGTTTTAAAATATTGCTCTAATTCG
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTATAGGGATAATGTCATATCAATTATGTTTTAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAGCACCCGTAAATAATACATCGTCTAACAATGGTAG
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA
GTTTCAACTCCTCCATGGTGCGATTATAAC

>NC_016609|8|1|5986432-5989880|CRT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TACATGCGATTCCTAAAAGATACCGGCATACCTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AGCTTTGTTTATTATTTGGCCATGGCTATAATCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	GGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAT	ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAT	ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG
GTTTCAATTCCTCCATGGTGCGATTATAAC	CTTGGTGGCGTGGAAATACCAGTGACATTCAACTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TAGAATGGCACATGGTCATTATTCCTGGCAGATCGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CACAATATCCGTCGAGTTTAGAGACTTGTCTCATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG
GTTTCAATTCCTCCATGGTGCGATTATAAC	CACCAAACCCTTTATTTTGAATATTGAAAACCAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCGGTCAGCGACCCCGACTACGTTTACCTCATTAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	ATAGATGAAGACCCGGACCTGTATACCGGTGGTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TAATCGTTACCCAAACAAAACCCAAAGTGTACGTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGGGTGGCCGTTTTAAAATATTGCTCTAATTCG
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTATAGGGATAATGTCATATCAATTATGTTTTAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAGCACCCGTAAATAATACATCGTCTAACAATGGTAG
GTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA
GTTTCAACTCCTCCATGGTGCGATTATAAC

>NC_016609|8|2|5987289-5989352|PILER-CR
	AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TACATGCGATTCCTAAAAGATACCGGCATACCTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC
GTTTCAATTCCTCCATGGTGCGATTATAACAATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCTGTTTCAATTCCTCCATGGTGCGATTATAACAGCTTTGTTTATTATTTGGCCATGGCTATAATCATGTTTCAATTCCTCCATGGTGCGATTATAA	CGGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CAGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTTGGTGGCGTGGAAATACCAGTGACATTCAACTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAGAATGGCACATGGTCATTATTCCTGGCAGATCGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACAATATCCGTCGAGTTTAGAGACTTGTCTCATA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACCAAACCCTTTATTTTGAATATTGAAAACCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCGGTCAGCGACCCCGACTACGTTTACCTCATTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CATAGATGAAGACCCGGACCTGTATACCGGTGGTTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAATCGTTACCCAAACAAAACCCAAAGTGTACGTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGGTGGCCGTTTTAAAATATTGCTCTAATTCG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGTATAGGGATAATGTCATATCAATTATGTTTTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT
GTTTCAATTCCTCCATGGTGCGATTATAACCGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCATGTTTCAATTCCTCCATGGTGCGATTATAACTTATTATACCGCCAACCAAACCGGGCGGAATCAACAGTTTCAATTCCTCCATGGTGCGATTATAACCAGCACCCGTAAATAATACATCGTCTAACAATGGTAGGTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA


>NC_016609|8|3|5989523-5989880|PILER-CR
	AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC
GTTTCAATTCCTCCATGGTGCGATTATAAC	CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TACATGCGATTCCTAAAAGATACCGGCATACCTTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT
GTTTCAATTCCTCCATGGTGCGATTATAAC	CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC
GTTTCAATTCCTCCATGGTGCGATTATAACAATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCTGTTTCAATTCCTCCATGGTGCGATTATAACAGCTTTGTTTATTATTTGGCCATGGCTATAATCATGTTTCAATTCCTCCATGGTGCGATTATAA	CGGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CAGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	TATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTTGGTGGCGTGGAAATACCAGTGACATTCAACTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAGAATGGCACATGGTCATTATTCCTGGCAGATCGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACAATATCCGTCGAGTTTAGAGACTTGTCTCATA
GTTTCAATTCCTCCATGGTGCGATTATAA	CGGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG
GTTTCAATTCCTCCATGGTGCGATTATAA	CCACCAAACCCTTTATTTTGAATATTGAAAACCAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CGCGGTCAGCGACCCCGACTACGTTTACCTCATTAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CATAGATGAAGACCCGGACCTGTATACCGGTGGTTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTAATCGTTACCCAAACAAAACCCAAAGTGTACGTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGGGTGGCCGTTTTAAAATATTGCTCTAATTCG
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT
GTTTCAATTCCTCCATGGTGCGATTATAA	CAAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA
GTTTCAATTCCTCCATGGTGCGATTATAA	CCCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA
GTTTCAATTCCTCCATGGTGCGATTATAA	CTGTATAGGGATAATGTCATATCAATTATGTTTTAT
GTTTCAATTCCTCCATGGTGCGATTATAA	CCGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT
GTTTCAATTCCTCCATGGTGCGATTATAACCGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCATGTTTCAATTCCTCCATGGTGCGATTATAACTTATTATACCGCCAACCAAACCGGGCGGAATCAACAGTTTCAATTCCTCCATGGTGCGATTATAACCAGCACCCGTAAATAATACATCGTCTAACAATGGTAGGTTTCAATTCCTCCATGGTGCGATTATAAC	TTATTATACCGCCAACCAAACCGGGCGGAATCAACA
GTTTCAATTCCTCCATGGTGCGATTATAAC	GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA
GTTTCAATTCCTCCATGGTGCGATTATAAC	AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA
GTTTCAACTCCTCCATGGTGCGATTATAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014220984.1\|5983932_5986005_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223288
NC_016609.1\|WP_014220981.1\|5969996_5972882_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350769
NC_016609.1\|WP_014220976.1\|5965206_5966073_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_016609.1\|WP_014220988.1\|5995095_5995872_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_016609.1\|WP_014220977.1\|5966097_5966802_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_165761321.1\|5967300_5968542_+\|zinc-dependent-phospholipase-C-family-protein	unknown	unknown	gnl\|CDD\|376406
NC_016609.1\|WP_014220980.1\|5968650_5969784_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NC_016609.1\|WP_133055379.1\|6000468_6000792_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014220975.1\|5964306_5965017_+\|RibD-family-protein	unknown	unknown	gnl\|CDD\|224896
NC_016609.1\|WP_041347208.1\|5966919_5967153_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014220985.1\|5990087_5990351_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_016609.1\|WP_014220990.1\|5996840_5998748_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_016609.1\|WP_014220982.1\|5972899_5977654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380297
NC_016609.1\|WP_014220989.1\|5995878_5996817_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_016609.1\|WP_014220991.1\|5998771_5999581_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_016609.1\|WP_014220995.1\|6001524_6002325_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180448
NC_016609.1\|WP_014220987.1\|5992324_5995096_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_016609.1\|WP_165761322.1\|5977669_5983936_+\|DEAD/DEAH-box-helicase	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|350681
NC_016609.1\|WP_014220994.1\|6000947_6001517_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_016609.1\|WP_014220986.1\|5991815_5992322_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014220984.1\|5983932_5986005_+\|AAA-family-ATPase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.1583e-17
NC_016609.1\|WP_014220981.1\|5969996_5972882_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.59059e-49
NC_016609.1\|WP_014220976.1\|5965206_5966073_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.78376e-21
NC_016609.1\|WP_014220994.1\|6000947_6001517_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.39193e-13
NC_016609.1\|WP_165761321.1\|5967300_5968542_+\|zinc-dependent-phospholipase-C-family-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	5.40196e-11
NC_016609.1\|WP_014220980.1\|5968650_5969784_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	4.58685e-55
NC_016609.1\|WP_014220987.1\|5992324_5995096_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.82778e-35
NC_016609.1\|WP_014220988.1\|5995095_5995872_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.33761e-20
NC_016609.1\|WP_014220985.1\|5990087_5990351_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.713e-30
NC_016609.1\|WP_014220982.1\|5972899_5977654_+\|hypothetical-protein	gnl\|CDD\|380297	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX.	0.00198648
NC_016609.1\|WP_014220989.1\|5995878_5996817_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.41292e-51
NC_016609.1\|WP_014220991.1\|5998771_5999581_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.33041e-22
NC_016609.1\|WP_014220995.1\|6001524_6002325_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	4.57718e-129
NC_016609.1\|WP_014220975.1\|5964306_5965017_+\|RibD-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	2.27201e-31
NC_016609.1\|WP_165761322.1\|5977669_5983936_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350681	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins. Yeast Hrq1, similar to RecQ4, plays a role in DNA inter-strand crosslink (ICL) repair and in telomere maintenance. Hrq1 lacks the Sld2-like domain found in RecQ4. Hrq1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.72022e-53
NC_016609.1\|WP_014220986.1\|5991815_5992322_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	7.08348e-61

>NC_016609.1|WP_014220984.1|5983932_5986005_+|AAA-family-ATPase
MKLFIYDKFWDALLSLNKTTQIKVTDFISKFRTNSKSAAIHLESIQTFKDQSLKTARIDQKYRAILKEVKASDLYLLVWVDNHDEAMDWAKNKIIDWNEQTQAFQVYTVDEVAAVADAKTAVTNDLFIGEYDGERLIKIGVPEILLPSVLKVNNFEGLEKLESYLPIDVFENLFYLLEGAHIDTLISEVQEGRTNNDELRSKNNARSFIELTDDEIFNEALQGSLQKWKYYLHPSQSAFVYGDFKESIKLSGGAGTGKTIAALHRLKHLAGKVENSLPVLFTTFTKELTENLKGLAQELEIPSGTYLIENIDMLAFRLAQQYYLLRATDKVFGLSAIKKPAEIWEQVLAEKLSSFDEEFLQEEYEAIILDQHIDQQENYLKASRMGRGKAISRKDRFLIWELIEDFNQRKAAEGLYYKEEVYNKVSQYLLQHKTALFAHVIVDELQDFSNIELRFIRSLTQAGPNDLFLVGDPLQNIYNKTINFSKAGINVRGNRSKRLRINYRTTEEIKNFAIKVISEENYDDFEGNVEEKKGYLSLFHGVKPQYPVYRTKNEELEAVAKDINQLVEEGYSFNDIVVAARTKDAVDDFRNHFHKVNIPYVNKNLLNNQNEGVRLSTFHGLKGLEFKQVFLVDVNDRTFPRQPFNFSGLTPEEQQQIIKTEKALFYVACSRAIQRLMISGVGTRSAFASV
>NC_016609.1|WP_165761322.1|5977669_5983936_+|DEAD/DEAH-box-helicase
MQQAIEIKESITSYLKATFTFRKKEVARAFDAFIHHPAQGMFKGPYVSLKLRFVKADAEEVPRIPLTIKPNWPPYDHQVQSWTRLSTVDKKPQPTIVTTGTGSGKTESFLYPILDYCYQQQHRAGVKIIILYPMNALATDQAKRLAEIIHEDHRLRGKITAGLFIGEGNGPKGQFPKSMGETNIIEHRDTILDSPPDILLTNFKMLDYALMKHNYHKLWLNNLKDPGLLQFLVLDELHTYDGAQGTDVANLIRRLKLKLELPAGQLCAVGTSATIGSGAEAPQLLADYASKVFGETVGTDAIITENRIGVDAFFGADETLLDFIPLPHRLKDLEHRESEDFDTYLQAHIDIWQQDKRSLAHGLIQLKLVKDLVKVANKAKGTRTVEEIIRDLSLANENFRKLPQWDATHQYSPKERILESLLTLIAAAKDIDNPRSPFMYLQVQLWVRELSGVQYTLEQPAQFSFRDQVDANKEIAALPPWYCRECNSSGWLGVKPDNRDVFSKDIHEVYEKFFARNKNVYFLLPGNELTTDDLQATGYAPDDFLQEKIHPVRLYIVPKDEDGFNIQAFRKLKNNKSEHICPCCNNAGTVAIIGTKIPTLSSIVVSQTLATDLDPASDQHRKVLAFTNSVQDAAHQAGFIEGRNYRFTFRASIQKVINAMEEPQRLDVLANQFKDYWKRYGDETGIDPLSGYLYRFFPKDYLGKASPLDYYKSNQYYPHFLKEFDARIQWEVFAEFGFNSRIGRTLEKTGASSVYFDSERLTQAIELLTNWLQLNDVSGTINSEALLRFTNLVLHRARNRGAIDHVYLKKFREEKLSLWDLNWQKDRRHFLNPKFGTRSRLPKLLTNNDSRSNLLDTTRAKNTNWFHAYFRKSFKQASSEPNFINEFYEQWAQSLVKAGLLNSIKIDDQYNYAIVADALWVKKNVKEYRCNSCEDVIYTNDAGSLVNEGQCLSYRCTGNYALEPAASNNYYKAVYNRNRFPRVYAREHTGLLGRREREQLEIDFKQRSRFNATNTLVATSTLEMGIDIGTLNTVYNNSIPPLPSNFLQRVGRAGRSSGAALVVNFAKNQNHDLYYYTDPLDMMQGDVNTPGCYLEAKDILRRHFTAFCFDSWTSAQPNENAIPTFIRELKLASRDLNDAAFFINRLNNFIETNRVILVHQFLQQYDQHTGTVAFNEVAGALDSGQFYEQLLTVFARIKDELLQIEQRRKELDDMAKTLNLAKGDPTLDELVREKKNLSGIKKGIISRNTLEHLTNVGVLPNYAFPETGVRLNAHVMSRQAEGSDNIALDKDFEIVRPASQAIKELAPENYFYTQGYRFEVTGVNTFDWSEPLHFHYKRFCSKCDHMELDSLASKGNCPKCDDASWNAASNVHRYAKLTAVKSFNKSGDATLTDADDDRDAQQYLMMHHVYLDKKTSEGAWVLKDIPFGIEYVKNATITSVNYGRSDANDARKLRINDTEVLTKGFVTCKHCGKSVSATHLLASARDFHYGYCQYKEVGYQPGSNEVFEEVYFFREIQTEVLKIVLPIQEFNSGADIRMFEAGIDVGLKKYFKGNPDHIRILSYREFNHKTGKFDRFLLLYDTIPGGTGYLEQLFDHKEFSLLLRYGYESIRDCSCQLSGKDGCYKCIYSYGNQYNRADLSRARAENWFRQICEKTDAWVQNKEGLTSITDSGKIEESELEERFLKLLSIYADKTDGMSFESMKQDGKVYYQLSLDKGDISALYWIRPQVSLGTKDGIAYSTRTDFLLVCGKYRIDGKDYKDEVPRIALYLDGYQYHASETHNVFERDIEIRKAISRNPQYKSWTMTWKDLDQWQALLGGDTTVKDELFSTYKNYFYTNYTGKLLGTLKDQRKVNYAQGVTNVYRWLEQLWHPVISVHQKSWYLYTASWTKNLLEPSFAPDKLNSLLMEKLTSDSYIRNNKVQNFDALLPVQELPKFDFAGWRIWVNVHQKVVYNCLELLPVKAIDKAQWEDFWRIFNLFQSDKFVVAQDADQQEGDADIDLLGEIKALYDATLHDLMQQAISKGWVTAGNAEYLDSWMDETGNILADAELVLTVPKIVVGPRSTECRKMFETAGFRVYALNQINDIKL
>NC_016609.1|WP_014220982.1|5972899_5977654_+|hypothetical-protein
MIHFIHNIGDYFASNYFDEDFSRKVIGKSGYGVDAIKQFNLAIARLKPEYFKLKQKFIENHLRTKDKLNLSHAFHSLVLTALGYDAAHTQYDELFSINDKNILPVRHILYRGDQVHLMVMEMHALIKTGDEEPDGLFEQSYNVANEEEAAAKTQKYHRSHWADIFTVRDGMSISPMIINQAINELFLQPMHLRPKFILLCGGNQYFLLEAEKWFRGSYLQLDLEALFDDASVQKDYYAVFYLLLGKELLAPTAEMVLMDQLDEDAHKAAYEVTKDLKEGVIHAVENLANEAVQYLKKQGVNYHEIDANLLKNDCLNMVYRLLFLFYAEAREDLDILPSNDEVYERGYSLEMLRDLEQVPLVTESSINGYFFHDSLFRLFNLLNKGYREEEGASRTFKIRHLDSPLFNNEELHYLNRVKIRNVVWQDVICELSLSKKQRGKNRGRISYTNLGINQLGSVYESLLAFRGFLAETDYIEVHRKKKKGESSEKVVRIDGSFLVPRHRLGDFHKDEIYYTEKEETADELKVIPQGSFIYRLSGRDRQKSASYYTPEVLTQTTVKYTLKPILERLDKGELKAPDLLKLKILEPAMGAAAFHNEVINQLAQAYLTYRQQELNRKVDPNHYQEELQKIKAYIALNNVYGVDLNPTAVELGKLSLWLNVIHKDMQTPFFGYRLGVGNAVVGSWLKVFKYKDFSFEPKGQKGFEKKEWWTIAPRHLQFGKKGVLRREDEIYHFLLPDDSMVASAGIKLLKDAYPAEAVRVAEWRKVFCEPIRQDEYTLLQQIAKAIDALLLEHYEIQKNISLITEANTAYFGNENASLNINFLSYSYEQKEKFARERLKTNAPYYKLKQIMDYWCSLWFWDLRAAAELPTRRQWYQDLVQILNIDLTTVYHQEQTDEEAGRDYRKDKKQLEKQLVEALKQSTSSLFSNERAVLVKQYADQYRFFHYELEFIEVFRENNGFDIAVGNPPWLKWKFEELEVMGEIYPELMIREDIKAPQANKFRSIFFEQESNRNEYFNELIDDSSNGYFMSSAQNYPLLQGVQTNLYTCVIENSLKWVNEDGFIGLVHPDGIFNDPKGYAARRVLYKRLFYHFHFKNSLTLFQEVKDQKQYSLNVYSGRLNNGIRFDTISHLLHPSTIDECYVSHLTELPLMQRTLDGKLVWDLRGNQNRIITYDEELLLLVRNLFDDDANEDNAKLPLIYSRNIIEILNKLNQNKSKVRDLKGVKISVGFDETIDMNKGKIQKGNFQHDTVENFIFSGPHIFTANSYYKSPREISNNKSEYDTIQPSLMSESYLQNSLYQLARHPSDDEDAWKKMLKIGFRKMLNQTADRTLNGTVLPKGTMHINGIISVVSTDETELLMFGALSASLLFDFYIKATGKGNLNKSTIENLPLKVSTEFEPYILFRFLLLTTVTRHYRDIWEDHFMEGFKNDTWSIDDARLLPLKEYEKKWDFKKSLSNDFARRQALLEIDVLVAMAFNVSLTDLIDIYNVQFRVFKKNEDDTWYDSKGNIVFTGNVGLVGVGLDRPDWEQITAMKEGETYTHTITKSELYQGRQVTYHAPFTKCDRAEDYKRAWAHFEKRFNKV
>NC_016609.1|WP_014220981.1|5969996_5972882_+|DEAD/DEAH-box-helicase
MNFTSGQRITNRDEDFIINEAIDNNGSWILKVEGISELVKGKRFVFDTHIDKEIRVLNPIDTELIADTDYGYRKTKLFIENQMRSAPVYSKQITVAHKAAFNLAAYQLEPTLKAFDLPRPRILIADGVGLGKTIEVGIFLSEMIRRGKGKRIMVLALKSILGQFQQEIWNRFAIPLVRLDSDGISKIKSELPANKNPFEYYDKTIVSIDTLKNNAKFQHYIEKTQWDIVVIDECHTVANTGSLRGGLAQLLSTKCDSLILTSATPHNGKKQSFANLVNMIEPLAIKDDTNYSKEDILPYYVRRFKFNIDDESVRSNFPERKVVPIHANLTDAENAFLALQQKIKFDAINSLNAADIQNDLFGRKSPRKQKRDLLFAIGLFKSYMSSPEAALSSVENRIKKLDAMTDQKELVENNLELLNQLRKQLQHIIDAKQDAKYQTFKNELIRLKWNGRKNDFRIVVFAERIETLKALKQKLQQDFELEDKVIADFHGSLTDMEQQRIIEDFGKADSDYRILLTSDAGSQGVNLHYFCNYMFNYDIPWSLITLEQRNGRIDRYGQSKTPYIHYMIAKSELKGLKDDLHIISKLKDKEEAVYNSLGDAASVYKLYNVTAEEDLVTMAIAGNNERLIDQPVEAVAEDAGFDLGADFWDDATPALPVADPILEQASLFANDRTYYEALILQLKSDGYLNLDDAQFEGDLLEVKHTKELDRILYDLPHEAKPQKIGDVYQLSLYKEEVQQAIADARKKKGEWAKFHILYELHPVVRFLMTQLEASVDKNVGLVAKLSQLPEGVAYFVIHGMVSNNLGQSVLSDFFVVPMHIDGGLQGKPLPFEDFLKAQQLDKELFTESITDNDLAKLQSLLPEVIDFARQLHMGQQQQMLQWDMEKKLAVYEEKLRNWKAGKEQQMQQEFGDKPDFGFLKRRRENKEFEFKTILHNSSRYFKDLTSLNGDAYLKILAVFYH
>NC_016609.1|WP_014220980.1|5968650_5969784_+|NAD(P)/FAD-dependent-oxidoreductase
MLPSTQTNTLVIGAGISGLATAACLQQQGIEYVIIEKHNQVASAWHNHYHRLHLHTNKRVSQLPYKKFGNNIPRYPSRQQVIDYLNDYQQAFQIQPVFNTIATAVKKGDGYWITQTTNGIFQSRFLVMATGPFGTPKRVVLKGMETFPGKIMHSSAYKTGKDFAGQKVLVIGFGNSACEIAIDLFEQGATPVMAVRSAVNVVPRDVLGIPVLELSLLLNFLPPRIADLLSAPLINALIGDIVPLGLKRKPYGPLEQVRREGKSPILDIGTIRHIRKGNIKIVGDIDFIEGKQVQFKEGATQSFDAIVACIGYSQDELKIIETDNNRLNDLRLSANRQQYFGKDGLYFCGYYISPTGQIREIAADARKIAKDIVFRCK
>NC_016609.1|WP_165761321.1|5967300_5968542_+|zinc-dependent-phospholipase-C-family-protein
MPGYFIKRLALSALLLIHASSVCKAYSVLTHQALIDVNWDKVLLPLLKAKFPGCSNEALKEAHAYAYGGAVVPDIGYLPFGSKLFTNLIHYVRSGDFVKTVLQDAHNLNEYAFALGILCHYYADIYGHPIGINVSVPEIYPKLKQKFGDTVTYDEHHVSHLRTEFSFDILQTARGNYASTAYHDFIGFKVADTLLQQAFSETYGLDANELFGNFPKAVGRFRFAIMNLFPFFTKAAWAAKKNEIQKMDTTATSRNFIYRMHRKNNRYKFGKDERPGFFARVFAVVVYIIPKVGALKALKFKNPGPVAEKNFIASFDTVTIHYAAHVTTLYKHAVRLHNIDFDTGIRTSEGEYSLADKTYCELLLQLKAKHFETVNPALRNNIISFYAVPQKTDLSKKRSKAMAALAQLKRENI
>NC_016609.1|WP_041347208.1|5966919_5967153_-|hypothetical-protein
MNPIYNSIEEQRWAMLEMRTLLNQVKTTYGANPPADILNAIAQIATANRTKSTTHHRKLNYTIGVEEFCTKNNLPLD
>NC_016609.1|WP_014220977.1|5966097_5966802_-|hypothetical-protein
MKKIFLALAMISFAGTVKVFAQAQAEVKETVAIIKNNLVESKEKIKKYEWIETTTTFVKGEEKSKKQSQCYYGVDGKLVKVETGGSTPQKKKGGLKGKIAANKKDDMADYIQKSVEKIQTYLPPDPEKIQQLYAGGKTSLHVLEPNKKIKLDFLDYNQKGDGLSVTIDKVRKIILAIDVNTYIDDPEDKVIFNIKYNTLPDKTQYPETTSLQADKKKVKIVIGNSGYKKAAPQT
>NC_016609.1|WP_014220976.1|5965206_5966073_+|alpha/beta-hydrolase
MKKCTYLLLSFMIVFASVNTTQSQYMQDTAALKKGYSEVNGIQMYYEIYGKGSPLVLIHGGGSTIQTSFGRILPLLSKNRSVIAVELQAHGRTSDRNAPLSFAQDANDVVTLLKNLNIPKADFLGFSNGAQTAMQIAISYPAVVNKLIFASGFYNRSGVPDGFWKGINNAQFSDMPQALKDGFLKINNDSAKLLNMFHRDVVRMQTFKDWSDNDLTSITAPALIIIGDRDVPTPEHAVAMHHLIPHSQLAIIPGVHGQFLGEITTLDNGKWKEQYVADLFEQFLTAAY
>NC_016609.1|WP_014220975.1|5964306_5965017_+|RibD-family-protein
MIKRPHVICLMMTSVDGKILGEKWGNNKQVKTLTESFEKVHELIGNKNWIVGRTTMEKDFTHYAKPVYKEVGHAISREDFVANRNADSFAVVIDGQAKLGWNSSDMLGQHVITVLTESVKDSYLAHLQEIGVSYIFSGKDSVDLKVVLEKLTALFGIETLMLEGGGHLNGSFLNEGLIDEYHQLLLPLADGRIETTSVFEIEEKDRQFDATLLQLQEVKQIEHDVVWLRYKVFGRV
>NC_016609.1|WP_014220985.1|5990087_5990351_-|CRISPR-associated-endonuclease-Cas2
MYIILVYDIGEKRVAKMLKLCRRYLNWIQNSVFEGEITSVKLKELIHEARRIMEEEKDSLIIFKSREEKWLEKQIVGKEKNDLDNIL
>NC_016609.1|WP_014220986.1|5991815_5992322_-|CRISPR-associated-protein-Cas4
MNINATLINLYHVCKREMWLHANGIRMEQTSDTVAEGKLIGETTYPQRAEKYTELEIGGSKIDFYDAKNRVIHEVKKSDSMEEAHEWQVKYYIWLLEQNGIEGVKGVLEYPKLRQTKNIEFTDEDQNYLRKTVQQIEAIIGGESCPPVIKARLCKQCSYYDFCYITET
>NC_016609.1|WP_014220987.1|5992324_5995096_-|CRISPR-associated-helicase/endonuclease-Cas3
MLKSFEDILTNMPDIASILNGHDRYWAHIHPSKKEELLAEHTVLVNSYAEKLVEAHHLDAVIDSLITEHVADWEDAAQCAVIIKQCFVGAIVFHDFGKINENFQLLRMQNYNGFTENKNILLKPSYGHSKLGAFLYSCYCIDSIFKQSISANSKKLLAAHCLLLSYSINQHHSPALFSVTENNSYLSGFKGIYESLRYYIQQYNWSLNDKSVIIVLDKMEDVWLRDIKERRAYKPFPFYTLIKLNFSLLTAADYLATHHYTTSSENGNEGETFDFGVFDKRERVEQIAAHLRLFKHNQAAFGKANSYCFEHPNIRSKDNLNKLREEMAVEVIQTIKENAGKRLFYLEAPTGSGKTNLSAIIATELLLTNPELNKIFYVFPFTTLITQTFGSLKESIGLKDNEIAELHSKAGLASKTDIKEEEDKDGLYADSKRDYIDHLFALYPVTLLSHVKFFDILKTNSKEANYLLHRIANSVVIIDELQSYNPNIWDKMLFFISEYAKHFNIRFVLMSATLPKISGLKIGTNNVPDFVDLLPNARKYITNPNFSQRVTFNFELFNLGKIEISRLADFVLEKSVAYATKHNNVKTIVEFIYKKSAANFFQHIQHTDTFQQIFLLSGTVLESRRKEIINYIKRSNSEENILLITTQVVEAGVDIDMDLGFKNVSLIDSDEQLAGRVNRNASKAACEVYLFKMDDAHILYGKDYRYKKTREEISSEIYQAILTGKDFSQLYEKVIGFIDESNKPLFKDSIMGYTDGLFHFDYPEVDRGFRIIEQESACVFVPLDLHLSIDGAKQSERDAIFSQSELDLLSQFDIYPNLENQISGLAIWSLYERLIERRIKHKKQAGSFDIQQKIDFKRLQSIMSKFTFSLMQFAKDYKELQLFGEEKYGYLYLHGWNEKRIEGKPYSYENGLNNEVFMTSNFI
>NC_016609.1|WP_014220988.1|5995095_5995872_-|CRISPR-associated-protein-Cas5
MVNEKLISFDLYSDFAFFKKPDFNDGLQLSYNMLHKPALLGILGAIIGLEGYKRKGELPQYFQLLKDIPVSIEPLRHECGNFQKTSVKYTNGVGYANADGNLLVEETMLIKPAYRCYLQLDLTNKTQAKIYEYICTEQCEYIPYLGKNEFQAWVTDMQEWNTLPLKPSASFSINSLFIKEGSVRNQRAETDIAFAFDSMESIGSFSYFERLPTGFNEELMQYQLSDFAFTDWKLKPESKISSLYQLKALQEEKIIQLF
>NC_016609.1|WP_014220989.1|5995878_5996817_-|type-I-CRISPR-associated-protein-Cas7
MSTSFNNRVFGCAIIKAINSNYNADFSHQPRTLPDGTVYATDKVLKYSVRNYISKNYPGEKIFYFKSYSEEMQPRNLKETYVKNFGDFPKVDKKDSSKARKAVLSNLLQCVDVRLFGGTFAEEGANLSIHGTTQFTHGVNRFPEGVIYSEQISAPFRNSNEKSADSMQTTLGTQFKLKEGHYVHHLSINPRNLEDMNKAVDSTGVTADDIEKLKEALRNGVTFYDSSAKAGVENELLFWVQLKEESKLVMPSFVELVTVGLDDGRSIDFAKVTALLQKEAVKAQVEKIEVYYNTATTTVINLPANVQVYELN
>NC_016609.1|WP_014220990.1|5996840_5998748_-|hypothetical-protein
MIKELTNFIKSLDPGMKMLGMKPKEGLHIQLRIQKEEDQVFIDEQSIVQTAFTRKKDQTPEEVQFLKRCANLIQLSWCVNTNKCFDLPIKAIHSCSPYCLAVKKENLTGGEKYKENIKSKVYERISKYFAKASELLETDEEKQMIKVFEQALNSEEKFNAWLTMCPEYEQLKDSEYVIFYLDVPFCQYETTNARYLADKLFNTNEYDKTVAGEIFGTSDFFNGYPAKKPFLSHQSASFDIAARISAEQAKHLFEFQDIMNRNIFPKPLPIFIHQDEIMQKAGRSLEDSAMAIFKREAEKEDRDSRISYREIIEELYEKHGDELGNYYLLFYDRGEIKDFDFVPKFEYLLCDEKGEKWAIEDLFNGGNDQSIKNVFHFQQAVLLLIFNNGLIVKTKAGGFQYKYFDEIDSKYTKSAATYLHILQYRRAFYDFIYKSERQSVTAAMFDSILRTSVLEDIRVDEIKSSYHTEDRNIRKKLNIWFSLKENFNQSSHKKNETMANKLKEHREFIKKLVKSEADIENDEQYAFAAGQVIFYLMSKSKTADRSYKRLEPFLQQVQAKQLNMAISRMFDAYKHEQFSGNFKTPFAQVVAYDTSRNIRDLIPTLLSGIFSKNSLFSDKEYEDVITVDSEVEADN
>NC_016609.1|WP_014220991.1|5998771_5999581_-|CRISPR-associated-endoribonuclease-Cas6
MRLQLTLTPCAGHSLLPVNYQYPLSAAIYRIIQQADEKYSTFLHDQGYKLNGKSFKLFCFSDLRVPFRIQGDRLHINGSPASLTISFHVDEAATNFIRGIFINQQFEIADKISRTQFSVTHVQLLPNSFASIHHTEPEMVLQPLSPLVVGRKNNKGNYDFLSPADPDFNEWFIHNWIEKYKTINGSATVDVETIRNRISIQLLTPGAEIKSRLITIKAFTTEQTQIRGFTKFRMKVKASKLLLELAMNAGLGLYNAQGLGCMEVSEIIS
>NC_016609.1|WP_133055379.1|6000468_6000792_-|hypothetical-protein
MSDNPIIYRTPGYESLDAKDFIFPLSPTYMLFRHRTTRITVNPLIRVLLDMLFLVQANEYVSCVSKEYPQQLYNAFQKDFSSSIDRLREEVFSCIHDSSTIQRGSRL
>NC_016609.1|WP_014220994.1|6000947_6001517_-|Crp/Fnr-family-transcriptional-regulator
MEHLINYLLQFGHLNQQQIELIKSKVVIKTTKKDEYYHEAGRIPREIIFLTEGIMRVCYYNNKGEEITKYFLEENRFIADVNSYNQGIPSTEYVQAITDCEYIVLSKTALDDLSQTIVGWDAIIAKITAKALAEKVNRISPMMTADATERYLTFLNNFPTVANRVPLSCLASFLGITQSSLSRIRRTIR
>NC_016609.1|WP_014220995.1|6001524_6002325_-|SDR-family-NAD(P)-dependent-oxidoreductase
MAKTVLVTGASSGIGKATAIYLAQNGYQVYGAARRLNRLQELNTFGIIPISLDVTKEESIEACVASIGSVDILINSAGLGSYGALEDVPIPEAKNQMEINLFGVARLIQLVLPQMRKNRYGKIVNISSVGGKMGLPMGSWYHASKFALEGMSDCLRNEVRQFGIDVIVIEPGGTQSEMMAIGAENMQRVSKKSVYSNLATGIQKMYANMEKNAAAPIVVARLIKKGIEAKHPKTRYIGGTMAKPMLFMRKLLSDKLFDKMIMSQIK

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Crispr_ID: NC_016609_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016609_9

8455051-8455194

Orphan

Consensus_repeat	Method
TAAAGATTTTATTTTAAAGGGTACGATCAACAACACCGTCCCGTTTCTACGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016609_9

>merge|NC_016609|9|8455051-8455194|CRISPRCasFinder
TAAAGATTTTATTTTAAAGGGTACGATCAACAACACCGTCCCGTTTCTACGGGAGGGAATTTTTTAAAAGATCAGGTACCAAAAAGACATTAAAGATTTTATTTTAAAGGGTACGATCAACAACGCCGTCCCGTTTCTACGGGA

>NC_016609|9|9|8455051-8455194|CRISPRCasFinder
TAAAGATTTTATTTTAAAGGGTACGATCAACAACACCGTCCCGTTTCTACGGGA	GGGAATTTTTTAAAAGATCAGGTACCAAAAAGACAT
TAAAGATTTTATTTTAAAGGGTACGATCAACAACGCCGTCCCGTTTCTACGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016609.1\|WP_014223040.1\|8455477_8456794_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_016609.1\|WP_014223030.1\|8442684_8443734_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_016609.1\|WP_014223041.1\|8456899_8459272_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|273634
NC_016609.1\|WP_014223043.1\|8462393_8462681_+\|2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|379083
NC_016609.1\|WP_014223035.1\|8449471_8450641_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237381
NC_016609.1\|WP_014223034.1\|8447430_8449251_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_016609.1\|WP_014223046.1\|8464052_8464346_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|316153
NC_016609.1\|WP_014223048.1\|8466277_8467213_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_016609.1\|WP_041347627.1\|8459478_8459742_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014223039.1\|8452290_8453871_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_016609.1\|WP_014223038.1\|8451693_8452257_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NC_016609.1\|WP_014223047.1\|8464394_8465807_-\|cadherin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380078
NC_016609.1\|WP_014223042.1\|8460078_8462349_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|372685
NC_016609.1\|WP_014223036.1\|8450683_8450923_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|349414
NC_016609.1\|WP_014223033.1\|8445256_8447374_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014223031.1\|8443840_8444518_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NC_016609.1\|WP_014223037.1\|8451028_8451523_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|184695
NC_016609.1\|WP_014223032.1\|8444748_8445030_-\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014223044.1\|8462734_8463373_+\|hypothetical-protein	unknown	unknown	unknown
NC_016609.1\|WP_014223045.1\|8463442_8464039_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016609.1\|WP_014223040.1\|8455477_8456794_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.7981e-07
NC_016609.1\|WP_014223030.1\|8442684_8443734_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	8.78836e-65
NC_016609.1\|WP_014223043.1\|8462393_8462681_+\|2TM-domain-containing-protein	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	1.12453e-10
NC_016609.1\|WP_014223035.1\|8449471_8450641_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237381	PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.	2.1362e-66
NC_016609.1\|WP_014223034.1\|8447430_8449251_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.87308e-166
NC_016609.1\|WP_014223048.1\|8466277_8467213_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.43279e-100
NC_016609.1\|WP_014223039.1\|8452290_8453871_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_016609.1\|WP_014223038.1\|8451693_8452257_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	3.93653e-46
NC_016609.1\|WP_014223047.1\|8464394_8465807_-\|cadherin-like-domain-containing-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	1.1234e-12
NC_016609.1\|WP_014223042.1\|8460078_8462349_+\|TonB-dependent-receptor	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	4.09836e-14
NC_016609.1\|WP_014223036.1\|8450683_8450923_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	1.21876e-11
NC_016609.1\|WP_014223046.1\|8464052_8464346_+\|transcriptional-regulator	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.98499e-32
NC_016609.1\|WP_014223041.1\|8456899_8459272_-\|DUF11-domain-containing-protein	gnl\|CDD\|273634	TIGR01451, unnamed_protein_product, conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.	6.08858e-06
NC_016609.1\|WP_014223037.1\|8451028_8451523_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|184695	PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.	4.11761e-48
NC_016609.1\|WP_014223031.1\|8443840_8444518_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.60829e-80

>NC_016609.1|WP_014223039.1|8452290_8453871_+|F0F1-ATP-synthase-subunit-alpha
MVEIKPDEISAILRQQLSNFNAAADLEEVGTVLQVGDGIARVYGLNNVRAGELVEFENGVRAIALNLEEDNVGVVLMGESGDIKEGAKVRRTGKIASINVGDGMLGRVVNTLGEAIDGKGPIAGDKYEMPLERKAPGVIYREPVKEPLQTGLKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKEFYAAGKPVYCIYVAIGQKASTIAGVMKTLEDNGAMAYTTIVAASAADPAPLQFYAPFAGAAIGEFFRDTGRPALIIYDDLSKQAVAYREVSLLLRRPPGREAYPGDVFYLHSRLLERAAKVISDDGVAKNMNDLPESIKHLVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESNLFNAGIRPAINVGISVSRVGGNAQIKSMKKVAGTLKLDQALYREMEAFSKFGGDLDPATKLVIDKGARNVEILKQAQYSPFAVEKQVAIIYLGTQGLLREVPVKKMKEFEEHFLMEMENKMADILGEFKKGNLPDDGIKKMVNLANTLIPQYKA
>NC_016609.1|WP_014223038.1|8451693_8452257_+|ATP-synthase-F1-subunit-delta
MPNPRLAARYAKSLIDLANERSQLEPVYQDMLFLQLLCKESREFLVLLRSPVVKADKKVAIVEAVTKGKISELTTIFNRLLINKGRESNLPEVITSFIDQYKQQKGIHTVKLTTAAPVTEEMKKLIIGQVQKQTNMTNIDLKASVNEELIGGFVLEIGDQLIDASVAYDLNKIKSQFMNNDFIYKIR
>NC_016609.1|WP_014223037.1|8451028_8451523_+|F0F1-ATP-synthase-subunit-B
MELLTPGLGFFVWNLIAFLILLIILRKTAWKPILKSLKSRETGIAESLATAERVKAEMAQLKSENEALLAKAREERAQLLKEARDTKDRIINEAKEQAKIEANKIIADAGAAIQQQKMAALTDVKNQVGTLVIEVAEKVLRRELTDKSQQEKYIKQLAEEVKLN
>NC_016609.1|WP_014223036.1|8450683_8450923_+|ATP-synthase-F0-subunit-C
MNLMTILLEVQPGYGAIGASLAAIGAGIGIGQIGKGAVESIARQPEATNDIRATMILAAALVEGVALLAAVAGLLAVFR
>NC_016609.1|WP_014223035.1|8449471_8450641_+|F0F1-ATP-synthase-subunit-A
MLVRSVKSLLVAVFSLSIVISPLLVKAEGGGAPKEEKLNPAKLIIEHVSDGHEFHFVTIGNNPVSISLPVILYSPEKGFTAFMSSAFHHGTEAHEGYVWITEEYMKEHPEVEEQKDEQGKELFKNDKIYALDAEGKPSLTATVYDFSLTRNTTQMLISVILLIWVMSSIAKKYKKGIGETSAPKGFQNALEPIITFVRDDVGKANLGHSYEKYTPFLLSVFFFILINNLIGLIPGSANVTGNIGFTAMLGIVAFLVIMFSTNKHYWGHIFNPPVPGGVKPILIPVEILGIFTKPFALIIRLFANMISGHVIILAFICLIFIFGAMNTALGWGTSPFFILLAVFIYVIEILVAFLQAYIFANLAAVFIGQAFENGHDHEDVPGHHDPVVI
>NC_016609.1|WP_014223034.1|8447430_8449251_+|ABC-transporter-ATP-binding-protein
MAEKSKGKIIFDLSLLKRVFQYAKPYKRKFILSVIMAILLAIVSPIRPWLIQITINDYIHKGVTGDKAVKLSMEQVIIWVTIIQIGLLLLETAFRFYFSYLTAWLGQTVVKDLRVNVYRKILGLNLSQFDTTPIGTLTTRTINDIEAINDIFSDGLIPIIADLLSIIAVLIFMFFVDWRLTLISLASFPILIVATYLFKESVNKSFIRVRNAVANLNAFVQEHITGMAIVQAFAAEDKEFNKFKAINKEHRNANINAIFAYSVFFPVVEIVLAVGTGLMVWWAATHALGIYSTDEVAGRLLIGKMFSFFLCLNLLFRPLRVIADKFNVLQMGMVASERVFKVLDNEDMITTEGSFDPDMVKGKIAFEQVSFAYVGDRYVLKDISFEVKPGDTVAIVGHTGSGKTSIISLLNRLYHIKHGAIKIDDVKIEDFKLDALRRQIGVVLQDVFLFSGSVLDNITLRNPAITREQVVAAAKMIDMHDFIMQLPGGYDYNVMERGGSLSLGQRQLLSFIRALLYNPSILILDEATSSVDTESELLIQKAIDKLIAGRTSIVIAHRLSTIRKASKIIVLDKGEVKEMGTHDELIALQGFYYKLHQMQFDKHIPA
>NC_016609.1|WP_014223033.1|8445256_8447374_+|hypothetical-protein
MERELWHNNIDKQQKKAVQFVNQGKISPDTTVSLQIMDALIRGVDDLENQIEMDSTLNGNGKIKYLRSIDYLLQNYFSNLNRRDFPASLAPALIKAFGQCMELDKQHKSFGPVIESNDYGVDKMLIESLKYSEDNPGMAGARIVLMQKYLTLHPDQIMSELAKNPNAYFADSLIKVAVSTDISKVYDYAQANNKLGDRIRHHSDSTVQLIARIATSKSGQLYFPFLDNLMRGKITLKAIDSVKENDLGYYRLLVKTRIEYVERSLPPYNDTANQLQTLTEMMKRKANQYFIREINALHTSPSDNIRFRRLDGLSAQELYYLAVLGEDEIYTSSYTRGVYPRIWQAMAKPRADSLIMSVHADFFRKFIKMAAGYNELTDFLGKMDKQNAETLMKAFVIGLEKPRKINDLEDAVDVADSYSSIMDKNKELADFILNEVNVSYTKNVQENNKRGMVIYNLLRILFESADTTKKVDLSALLGIPSIYGKDYSNLTDDSGRVIQQVFFYGDEDKDGQTSYQNFMSMFRGKPGWRVDERKAEWASITSTKGKPVWIFANKPLYGEDDPDDKAQDKLIEYLRERKLEPTVVIHRGHSYHLSTTIQKLPSSARIIVLGSCGGYNNLNEVLTACPDAHIVSSKQVGTKRVNEPILQAINERLLVGHNIDWITMWRELKKKFATGDAKEMFDDYIPPYKNLGAIFIKAYRKSMGE
>NC_016609.1|WP_014223032.1|8444748_8445030_-|hypothetical-protein
MVDNRSLRMGKPGYKLITENGAFSVYSGLFITENGVFSVDSIPFLTEKGVFSVGSAPFLTENGAFPVGRVLFSTENKVKLTIRGTGLRVTIPY
>NC_016609.1|WP_014223031.1|8443840_8444518_-|response-regulator
MNAKGKILIADDEPDIVEIIRYNLTKEGYEIVTANNGDDAIQKAKLSQPDLIILDIMMPRKNGVEVCEILRAQPAFKDTVIVFLTALSDESSHVKGLETGADDYISKPVSPKILVSRIHAIFRRINKEPEEKVIRIDNLEIDPVKFEAKVDSKAVVLAKKEFELLYLLASKPGRVFLRNEILNQIWGNDVIVGDRTIDVHIRKIRQKLGIDCITTVKGVGYKFTM
>NC_016609.1|WP_014223030.1|8442684_8443734_-|two-component-sensor-histidine-kinase
MPSAKNFSPRQLAAFTAAILAFPIAVGILILTGNWQIGLASLVVVFAGSYWLILVTMERFIYRKIKLIYKLIYQTKATKKEEMYFKYILPQKSIDEVRADVEAWGEHRIKEIELLRQNEAYRKEFLQNLAHEFKTPIFAIQGYVDLLLDGAMEEEAVAKRFLENTSKNVDRLVNLMNDLDEISKLERGEQLLAKQNFPIQELIKEIYDSLSIKTQAKNIRTVIKKGCEAPITVFADKEKIKQVLINLVENATKYGKHNGNIVASIYDTDDQHVLIEISDDGIGIEEEHLPRIFERFYRTDTARSRDKGGTGLGLAICKHIIEAHGQSIHVRSTPDVGTTIGFTLESKRD
>NC_016609.1|WP_014223040.1|8455477_8456794_+|T9SS-type-A-sorting-domain-containing-protein
MSKFYLKLTKKDYWLITLMAVTVLLSLPVALQAQGLEFRNGKRISGNDGDDGAIYKFAGVAKDVDGYIKINGRSHSGVKLTNIDLDNTGWDKAFQPQIEYKNKSANGGEKDWWMEFEISFLSAKNNTPVAISSMDLTAIDIDGDDKHINEWVSLYSLDSYTTERRTSLSVSDLLENILSVLTLTGKKFSGPVTQYDNIDTTATKVMATAKYTNKSKFKIRAGGHSTDNDIATERQYSFWFKSFNYAAPVQSSLPVLLNSFTAKKNGSRVVLNWSTDMEKDFSHFVVQKSGDGKDYTDASVLFTDGNSSIHREYSFKDDLKNTGSGLVFYRLKMVDLDGNYKLSDVRIIKLTEDNAAQSITVYPNPVVSDLRITLAGSWQDKAVHIQVLNANGTSVVQFDRPGAGQTESINVNNLKPGLYVVSVSNGTELALQRFIKAK
>NC_016609.1|WP_014223041.1|8456899_8459272_-|DUF11-domain-containing-protein
MSFKFYPLKAMLFVLLLLGFKTHTQAQAVLQFVKTVSNFSTGGDGTTASMGNILIYTITVKNLTSTNFVSSKLYDNIPAGVTYITGSTTLNGAAVADVSGKMPYSGAGGLIKSPTYGSGILAPNVTATIVFQVKVSSNGGNVFNNATIDATQNAVSTIQATNTVYTAITMDAACNVVYQVTPVDASDNSNYHSYFRTVDITNGTGGPDLAIGPTPGTPQKDAFTGATIKRPGASGGGTKIELLDGCAAIAYDRDSNRIYFINNTTNADPLCYYDIDDDVIYRCTGYPLETNTSSGYNINRMGKGSDGKFYALTSNAKDLVRFSIGPGNVPTITSLGTLSNASVNGSKDVLSEGGGDLFADGSGKLYLIANSSNMYKVDPTTRVATFMGAVSPFPGTSQSLAIDANGNVYINGAYHDVYKLNLQTMQAAKINASQTNVFTSGDYSSCGFPALASSIIADKTYTDIDGDGIINGGDTVEYKITVTNIGNINAAGVYMYDYIPPSTTYIAGTTKLNGVSVADVAGVMPYAVTGSPNGKLVNTAGQQAGIILPTAANAAVVTFRVKTEPNKQVCNQSKISLLDADGNVMFVNSSDPTNIGQTPTCFFSDGVLPLMSLKFKGSLQEQRSVLNWTINGDEGVATYDVEYSENGSVFTKAGTVPAKGNTNIANSYQFTDADHTFSTTRYYRLKVNQKGGNVNYSGVILLNLNDLDVEALPNPFERDLNIQIRLKTAETVNIRLLDFAGRQVYSSTEQLGIGSHSLSIRIPAGLTKGMYMLDVKAGKDQLFTKKLLKN
>NC_016609.1|WP_041347627.1|8459478_8459742_-|hypothetical-protein
MKRIETPLQASIRLDAFNRPVTLIGNNALQVQSPLWLRVMYTCLTSPSFLFASFLPVFKSFPGCNHFIKQISGVRTSAYLIPIELKG
>NC_016609.1|WP_014223042.1|8460078_8462349_+|TonB-dependent-receptor
MLPLLPLLILLLSFLAGSAQTVVSGKVKDGKGRPVQGASISLKDTYDGATTDSLGAFHFKTTEKGEQVLLATSIGFKLQEQKITLSGATMHFDIVLKQEPNELTAVTITAGSFEASDTKRTTVLNSIDIVTTASANADITSAIKTLPGAQQVGESEGLFVRGGTAQETKVFIDGTLVNNFFFSSVPDIAQRGRFSPFIFKGTVFSSGGYSALYGQALSAALILESVDLPDKSSASLGISTVGVNGGFQKLSKNKNASWGVNYNYTNLAAYFAVIKQRPDNFKIPEFHNGEANFRIKTSKTGMLKFYGYFNYNQLGLRRPDIDSVELKNAFKLTNFNVYGNLSWKEKLGKKWHLYMGASYSNNTDKIGNELQDQQNVPVVMHLEPYDTKSFHVRSYGELAQIKTVFERRLYGLSAIRFGGEYMYFNDKNNYTNQYVTNGITAATDNFKAAFAEADIYLTNDLAAKFGGRVEHSSLLDKANIVPRISLAYRVGNKAQASLAYGIFYQKPEKDYYLRGYAYNNLLYTKATHYIANYQRVSRDYTLRIEGYYKKYQNLVKTYGTSNAGIIDSVATSGYGEAKGIELFWRDRKTLKNVDYWFSYSYLDTKRDYLNYPYAIQPNFAANHTASLVVKKFVTKIKTQFNGSYTFATGRPYYNIRYSSVSGKYQIADQGKTISYNNLSFSVNYLPTIGNAKSKNFTVWVFSVNNVLGTNQVYGYNYSFNGLRKDPILPTARRFYFVGCFLSFGVDRSEDVINSNL
>NC_016609.1|WP_014223043.1|8462393_8462681_+|2TM-domain-containing-protein
MENEKDPQLWKIAKRRVGFKYNLIAYLGMNCFFWGIWLFTGSNNGYGGFPWPIWPMFGWGIGVLYQFFDAYVFTKNGSSVEREYEKLKRQQGNFQ
>NC_016609.1|WP_014223044.1|8462734_8463373_+|hypothetical-protein
MKQLFFILLSIVIVSQGIAQSEKFTKAMTSTIATFDSAKTADDMLASSAAFERIGDAEKTQWLPYYYASLSQVLYAFMKNDMTQTDAYANKANDLLKKADALQPNNSEISCVKSMIATLHLIVNPQNRWQEYGPVLQTELDNAKKQDPTNPRPYYLQGQNLRNTPEQFGGGCATAKPLLEEALKKYDAFKPASALAPHWGKGQAEKTLSTCQ
>NC_016609.1|WP_014223045.1|8463442_8464039_+|hypothetical-protein
MEKETSFSHADSLALIESMINKATNRFNEDGFLYLLWGWVVLFCSVTEFFLLRIQFEKHYLVWTLTWAAVIYQIFFLRKKRQRQRVRTYTDEIVKYVWITFIIIMFLSGVLISTIQGREYYKLIDPMFLIIYGMPTFLSGIILRFKPLVWGGIGCWGLSLLTTVIPVEYHLLLVSAAMIIAWITPGYLLRLKFKKANP
>NC_016609.1|WP_014223046.1|8464052_8464346_+|transcriptional-regulator
MEFKDLDPILHSQLRLAVVSLLISVKEAEFTFIREKTNATAGNLSVQINKLKEVGYIEVIKQFKDNYPQTICKITPAGVAAFEEYVKNLQSYLGVNK
>NC_016609.1|WP_014223047.1|8464394_8465807_-|cadherin-like-domain-containing-protein
MKRIICLQIVTCMLVTGMNAQVTENFNTRNGVALNQVKGYLQSHCWTLPNFEITGFNTETDGWLVPGSAISTNQRTGIYTPSLDITDNITVSFNYQFNLAFEKGTRRWLKVFLTDPNNINVTQLDSFECAPTALAIKNYNKTFSHLQPGIYKLYLNYQGIGGATRIAIDQLNVSAPQHYAEGCNTSPVAVNDDISGLPNHTATGLVTINDRDADNDRLNAYLITNSQDGKVTMHGDGSFTFIPNPGFTGHSTTFTYKVCDNGYGRLCSQDATVKLDFPEEAVSLSDFAGLYNDGGQVELKWATGYEYNNDRFEIERSLDGHKWITAGTVKSQGTSATRKVYSFDDEVGKNKALKKDLYYRLKQVDDAGKVATSRLLVVRVYNTPTVKMMSVTPNPAKKDISVTTQLNESSFVALKILNADGAIVMNKTSKADAGASNFIMEGSRNLQPGAYTLDVSVNSKERMLVKLIKE
>NC_016609.1|WP_014223048.1|8466277_8467213_+|ABC-transporter-ATP-binding-protein
MSAIIKVNNLSKQYREVNAVNDISFTVNTGDIYGFLGQNGAGKSTTIRMLLTLIAPTAGTIELLGKNLHANRKEVLQQVGAVIEKPDLYKYLTGYENLSLFARMSGVKITQKKLTEQLEQVGLTERAHSKVRTYSQGMKQRLGIAIALIHDPKLIILDEPTNGLDPQGIADIRNLILHLSRHQGKTILVSSHLLHEIELIANRMLIIDKGKKIMEGTVAELVDPARTMVHLEVTNPQQVVAWLQSSRWNTCLQEQNKSVILLQMNKQQVPELTADLVKAGANIMSLQPQNSLESYFLSLTTENRHVDTFTN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016609_4	4.4\|3057863\|33\|NC_016609\|CRISPRCasFinder	3057863-3057895	33	NC_016609.1	3057904-3057936	2	0.939

1. spacer 4.4|3057863|33|NC_016609|CRISPRCasFinder matches to position: 3057904-3057936, mismatch: 2, identity: 0.939

tcccggcaaaaagtaagtatcgccctcaaaaag	CRISPR spacer
tccgggtaaaaagtaagtatcgccctcaaaaag	Protospacer
*** **.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016609_8	8.26\|5988110\|34\|NC_016609\|CRISPRCasFinder,CRT	5988110-5988143	34	MK765564	Tortoise microvirus 14 isolate 14_SP_70, complete genome	200-233	7	0.794
NC_016609_8	8.65\|5988109\|35\|NC_016609\|PILER-CR	5988109-5988143	35	MK765564	Tortoise microvirus 14 isolate 14_SP_70, complete genome	200-234	7	0.8
NC_016609_8	8.29\|5988305\|34\|NC_016609\|CRISPRCasFinder,CRT	5988305-5988338	34	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	86634-86667	9	0.735
NC_016609_8	8.29\|5988305\|34\|NC_016609\|CRISPRCasFinder,CRT	5988305-5988338	34	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	35982-36015	9	0.735
NC_016609_8	8.29\|5988305\|34\|NC_016609\|CRISPRCasFinder,CRT	5988305-5988338	34	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	36670-36703	9	0.735
NC_016609_8	8.43\|5989222\|35\|NC_016609\|CRISPRCasFinder,CRT	5989222-5989256	35	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	111926-111960	9	0.743
NC_016609_8	8.68\|5988304\|35\|NC_016609\|PILER-CR	5988304-5988338	35	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	86634-86668	10	0.714
NC_016609_8	8.68\|5988304\|35\|NC_016609\|PILER-CR	5988304-5988338	35	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	35982-36016	10	0.714

1. spacer 8.26|5988110|34|NC_016609|CRISPRCasFinder,CRT matches to MK765564 (Tortoise microvirus 14 isolate 14_SP_70, complete genome) position: , mismatch: 7, identity: 0.794

ctgaataatggacctagtgtagggtgtgttttga	CRISPR spacer
ccaaataaaggacctagtgtagggtgcgtcataa	Protospacer
*..***** *****************.**. *.*

2. spacer 8.65|5988109|35|NC_016609|PILER-CR matches to MK765564 (Tortoise microvirus 14 isolate 14_SP_70, complete genome) position: , mismatch: 7, identity: 0.8

cctgaataatggacctagtgtagggtgtgttttga	CRISPR spacer
cccaaataaaggacctagtgtagggtgcgtcataa	Protospacer
**..***** *****************.**. *.*

3. spacer 8.29|5988305|34|NC_016609|CRISPRCasFinder,CRT matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 9, identity: 0.735

caccaaaccctttattttgaatattgaaaaccaa	CRISPR spacer
tagaaaacgctttattttgaatagtgaaaggaat	Protospacer
.*  **** ************** *****.  *

4. spacer 8.29|5988305|34|NC_016609|CRISPRCasFinder,CRT matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 9, identity: 0.735

caccaaaccctttattttgaatattgaaaaccaa	CRISPR spacer
tagaaaacgctttattttgaatagtgaaaggaat	Protospacer
.*  **** ************** *****.  *

5. spacer 8.29|5988305|34|NC_016609|CRISPRCasFinder,CRT matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 9, identity: 0.735

caccaaaccctttattttgaatattgaaaaccaa	CRISPR spacer
ccagaaacctttaattttgaatattgaataatta	Protospacer
*   *****.** *************** * . *

6. spacer 8.43|5989222|35|NC_016609|CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 9, identity: 0.743

tgtatagggataatgtcatatcaattatgttttat	CRISPR spacer
cgttctgcattaaagtcatatcaattattttttat	Protospacer
.** . * . *** ************** ******

7. spacer 8.68|5988304|35|NC_016609|PILER-CR matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 10, identity: 0.714

ccaccaaaccctttattttgaatattgaaaaccaa	CRISPR spacer
ttagaaaacgctttattttgaatagtgaaaggaat	Protospacer
..*  **** ************** *****.  *

8. spacer 8.68|5988304|35|NC_016609|PILER-CR matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 10, identity: 0.714

ccaccaaaccctttattttgaatattgaaaaccaa	CRISPR spacer
ttagaaaacgctttattttgaatagtgaaaggaat	Protospacer
..*  **** ************** *****.  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1295079 : 1336763

unidentified_phage(50.0%)

integrase,tail

attL 1317656:1317670|attR 1337023:1337037

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014217345.1\|1295079_1295625_-\|tail	tail fiber protein	E3T4R8	Cafeteria_roenbergensis_virus	2.4e-14	37.7
WP_014217346.1\|1295651_1296212_-\|tail	tail fiber protein	NA	NA	NA	NA
WP_014217347.1\|1296237_1296774_-\|tail	phage tail protein	NA	NA	NA	NA
WP_014217348.1\|1296986_1297508_+	hypothetical protein	NA	NA	NA	NA
WP_133055326.1\|1297692_1298178_+	hypothetical protein	NA	NA	NA	NA
WP_014217350.1\|1298144_1298933_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014217351.1\|1298936_1299590_+	response regulator transcription factor	NA	NA	NA	NA
WP_133055325.1\|1299830_1300595_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_014217353.1\|1300591_1303834_+	hypothetical protein	NA	NA	NA	NA
WP_014217354.1\|1304046_1304550_-	quercetin 2,3-dioxygenase	NA	NA	NA	NA
WP_014217355.1\|1304619_1305201_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_014217356.1\|1305569_1308347_-	hypothetical protein	NA	NA	NA	NA
WP_014217357.1\|1308533_1309397_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014217359.1\|1309663_1310380_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_155966898.1\|1311886_1312054_+	hypothetical protein	NA	NA	NA	NA
WP_014217362.1\|1312201_1312615_-	hypothetical protein	NA	NA	NA	NA
WP_014217363.1\|1312794_1313130_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014217365.1\|1314522_1314768_-	hypothetical protein	NA	NA	NA	NA
WP_081195968.1\|1314907_1315210_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	7.5e-18	53.7
WP_014217366.1\|1315587_1316088_+	hypothetical protein	NA	NA	NA	NA
WP_014217367.1\|1316200_1316776_+	nucleoside monophosphate kinase	NA	NA	NA	NA
WP_014217368.1\|1316933_1317386_+	hypothetical protein	NA	NA	NA	NA
1317656:1317670	attL	NA	NA	NA	NA
WP_014217369.1\|1317888_1320471_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_014217370.1\|1320699_1322703_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_014217371.1\|1323150_1323981_+	hypothetical protein	NA	NA	NA	NA
WP_014217372.1\|1324081_1324495_-	hypothetical protein	NA	NA	NA	NA
WP_014217373.1\|1324675_1325011_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014217374.1\|1325478_1325874_+	hypothetical protein	NA	NA	NA	NA
WP_014217375.1\|1325858_1327178_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_014217376.1\|1327263_1327485_-	hypothetical protein	NA	NA	NA	NA
WP_014217377.1\|1327522_1327942_-	hypothetical protein	NA	NA	NA	NA
WP_014217378.1\|1327956_1328916_-	hypothetical protein	NA	NA	NA	NA
WP_014217379.1\|1329307_1329571_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014217380.1\|1329684_1330341_+	DUF3885 domain-containing protein	NA	NA	NA	NA
WP_155966958.1\|1330536_1331103_+	hypothetical protein	NA	NA	NA	NA
WP_014217382.1\|1331114_1331849_+	metallophosphoesterase	A0A0U4JGQ0	Vibrio_phage	6.3e-10	28.3
WP_014217383.1\|1331880_1332357_+	hypothetical protein	NA	NA	NA	NA
WP_014217384.1\|1332379_1332859_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014217385.1\|1332871_1333039_-	hypothetical protein	NA	NA	NA	NA
WP_014217388.1\|1333948_1335322_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_107685645.1\|1335539_1336763_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.0e-33	32.1
1337023:1337037	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2758615 : 2769597

Staphylococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041348439.1\|2758615_2760334_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.4e-137	50.4
WP_014218550.1\|2760430_2762221_-	DNA polymerase/3'-5' exonuclease PolX	A0A0H3TLZ4	Faustovirus	8.7e-21	29.4
WP_081195839.1\|2762252_2762528_-	hypothetical protein	A0A2R2ZGN9	Clostridioides_phage	3.0e-05	32.8
WP_014218551.1\|2762517_2763186_-	BON domain-containing protein	NA	NA	NA	NA
WP_014218552.1\|2763222_2765076_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	7.2e-95	35.3
WP_014218553.1\|2765219_2766842_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.1e-163	54.8
WP_107685534.1\|2766865_2767861_-	zinc-dependent alcohol dehydrogenase family protein	K7Z7U2	Megavirus	3.1e-20	30.0
WP_014218555.1\|2768007_2769597_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	5.9e-21	25.7

DBSCAN-SWA_3

5001639 : 5055204

Streptococcus_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014218105.1\|5001639_5002740_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	3.6e-09	24.0
WP_014220171.1\|5002837_5003311_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_071884247.1\|5003522_5005070_-	recombinase family protein	W8CYE4	Bacillus_phage	2.0e-26	25.0
WP_014220173.1\|5005415_5006114_+	hypothetical protein	NA	NA	NA	NA
WP_014220174.1\|5006124_5006541_-	hypothetical protein	NA	NA	NA	NA
WP_014220175.1\|5006597_5007203_-	hypothetical protein	NA	NA	NA	NA
WP_014220176.1\|5007293_5007584_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014220177.1\|5008023_5009223_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_014220178.1\|5009337_5009952_+	hypothetical protein	NA	NA	NA	NA
WP_014220179.1\|5009976_5010600_-	hypothetical protein	NA	NA	NA	NA
WP_014220180.1\|5010583_5011627_-	AAA family ATPase	Q56VQ0	Pseudomonas_phage	2.4e-103	59.4
WP_107685552.1\|5011855_5012098_-	hypothetical protein	NA	NA	NA	NA
WP_107685543.1\|5012407_5012728_-\|transposase	transposase domain-containing protein	A0A218MNE7	uncultured_virus	1.1e-06	46.0
WP_165761235.1\|5012735_5012858_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_014220182.1\|5013581_5016692_+	DUF499 domain-containing protein	NA	NA	NA	NA
WP_014220183.1\|5016703_5017318_+	DUF3780 domain-containing protein	A0A1P8DTE9	Proteus_phage	1.9e-28	40.6
WP_014220184.1\|5017336_5020369_+	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_014220185.1\|5020393_5023147_+	DEAD/DEAH box helicase family protein	A0A1B1IUI1	uncultured_Mediterranean_phage	6.0e-13	22.6
WP_107685553.1\|5023405_5023627_-	hypothetical protein	NA	NA	NA	NA
WP_014220187.1\|5023706_5024087_-	hypothetical protein	NA	NA	NA	NA
WP_014220188.1\|5024113_5025157_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_041348996.1\|5025153_5025534_-	mobilization protein	NA	NA	NA	NA
WP_014220190.1\|5025663_5026605_-	toprim domain-containing protein	NA	NA	NA	NA
WP_014220192.1\|5027706_5027916_-	hypothetical protein	NA	NA	NA	NA
WP_014220193.1\|5027928_5030196_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_014220194.1\|5030721_5032038_-	amidohydrolase family protein	NA	NA	NA	NA
WP_107685554.1\|5032286_5033111_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014220196.1\|5033178_5033643_-	DUF3291 domain-containing protein	NA	NA	NA	NA
WP_014220197.1\|5033687_5034086_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014220198.1\|5034158_5034707_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014220199.1\|5034687_5034960_+	hypothetical protein	NA	NA	NA	NA
WP_014220200.1\|5034989_5035712_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.9e-41	44.7
WP_014220201.1\|5035810_5036986_-	hypothetical protein	NA	NA	NA	NA
WP_014220202.1\|5037017_5037704_-	hypothetical protein	NA	NA	NA	NA
WP_165761236.1\|5037732_5039334_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_014220204.1\|5039445_5042643_-	TonB-dependent receptor	NA	NA	NA	NA
WP_107685544.1\|5043117_5043327_-	hypothetical protein	NA	NA	NA	NA
WP_014220206.1\|5043989_5044418_+	hypothetical protein	NA	NA	NA	NA
WP_014220207.1\|5044603_5045236_+	PH domain-containing protein	NA	NA	NA	NA
WP_014220208.1\|5045395_5045989_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_014220209.1\|5046096_5047368_+	FecR family protein	NA	NA	NA	NA
WP_165761237.1\|5047580_5051189_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_014220211.1\|5051202_5052570_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_014220212.1\|5052675_5055204_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_4

7309478 : 7314817

Serratia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014222016.1\|7309478_7310420_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.8e-38	34.2
WP_014222017.1\|7310429_7310969_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	2.9e-44	47.0
WP_014222018.1\|7310979_7311939_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.2e-34	32.8
WP_014222019.1\|7311938_7312490_-	NADAR family protein	A0A0S0N9W6	Pseudomonas_phage	4.9e-31	44.0
WP_014222020.1\|7312523_7313366_-	TIGR02452 family protein	G3MBH6	Bacillus_virus	5.3e-53	43.5
WP_014222021.1\|7313377_7314817_-	nicotinate phosphoribosyltransferase	A0A248SJ77	Salicola_phage	1.2e-100	44.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016609

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection