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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016928 Staphylococcus aureus subsp. aureus M013, complete genome 11 crisprs cas3,DEDDh,DinG,csa3,WYL 8 2 10 1

Results visualization

1. NC_016928
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_1 769643-769728 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_2 946685-946842 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_3 1065200-1065292 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_4 1149386-1149628 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_5 1224033-1224125 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_6 1432081-1432160 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_7 1978689-1978770 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_8 2038456-2038541 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_9 2286026-2286110 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_10 2440586-2440678 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_11 2782384-2782469 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 2285969-2286005 0 1.0
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 617062-617087 0 1.0
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 1286670-1286695 0 1.0
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 825166-825184 1 0.947
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1286737-1286755 1 0.947
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1286795-1286813 1 0.947
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1980142-1980160 1 0.947
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 2320328-2320346 1 0.947
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 369262-369298 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 369317-369353 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 861504-861540 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 881577-881613 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1786150-1786186 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1788367-1788403 1 0.973
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 2320347-2320383 1 0.973
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 825128-825165 1 0.974
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1665052-1665089 1 0.974
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1980104-1980141 1 0.974
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 2782442-2782479 1 0.974
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 779120-779157 1 0.974
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 779120-779159 1 0.975
NC_016928_9 9.1|2286056|25|NC_016928|CRISPRCasFinder 2286056-2286080 25 NC_016928.1 1874396-1874420 1 0.96
NC_016928_9 9.1|2286056|25|NC_016928|CRISPRCasFinder 2286056-2286080 25 NC_016928.1 2286112-2286136 1 0.96
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 779104-779129 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 779160-779185 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 825042-825067 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 1845551-1845576 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 2028412-2028437 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 2203655-2203680 1 0.962
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 2320386-2320411 1 0.962
NC_016928_1 1.1|769671|30|NC_016928|CRISPRCasFinder 769671-769700 30 NC_016928.1 810712-810741 2 0.933
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 183919-183937 2 0.895
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 617003-617021 2 0.895
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 926502-926520 2 0.895
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1145418-1145436 2 0.895
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1361370-1361388 2 0.895
NC_016928_2 2.2|946792|19|NC_016928|PILER-CR 946792-946810 19 NC_016928.1 1700143-1700161 2 0.895
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 779232-779268 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1145381-1145417 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1286758-1286794 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1286816-1286852 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1680333-1680369 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1786094-1786130 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 1989456-1989492 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 2034147-2034183 2 0.946
NC_016928_4 4.1|1149404|37|NC_016928|PILER-CR 1149404-1149440 37 NC_016928.1 2745431-2745467 2 0.946
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 815963-816000 2 0.947
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 881634-881671 2 0.947
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1145551-1145588 2 0.947
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1432138-1432175 2 0.947
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1680390-1680427 2 0.947
NC_016928_4 4.2|1149459|38|NC_016928|PILER-CR 1149459-1149496 38 NC_016928.1 1978648-1978685 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 183881-183918 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 617022-617059 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 617078-617115 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 779176-779213 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 825014-825051 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 1149687-1149724 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 2286083-2286120 2 0.947
NC_016928_4 4.3|1149515|38|NC_016928|PILER-CR 1149515-1149552 38 NC_016928.1 2320402-2320439 2 0.947
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 183879-183918 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 617022-617061 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 617078-617117 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 779176-779215 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 825012-825051 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 1149687-1149726 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 2286081-2286120 2 0.95
NC_016928_4 4.4|1149571|40|NC_016928|PILER-CR 1149571-1149610 40 NC_016928.1 2320402-2320441 2 0.95
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 2124320-2124345 2 0.923
NC_016928_11 11.1|2782414|26|NC_016928|CRISPRCasFinder 2782414-2782439 26 NC_016928.1 2124658-2124683 2 0.923

1. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 2285969-2286005, mismatch: 0, identity: 1.0

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcaaaaagaaattctacagacaatgcaagtt	Protospacer
*************************************

2. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 617062-617087, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

3. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 1286670-1286695, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

4. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 825166-825184, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacccc	Protospacer
****************.**

5. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1286737-1286755, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

6. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1286795-1286813, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

7. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1980142-1980160, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

8. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 2320328-2320346, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

9. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 369262-369298, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

10. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 369317-369353, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

11. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 861504-861540, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

12. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 881577-881613, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcaaaaagaaattctacaaacaatgcaagtt	Protospacer
************************.************

13. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1786150-1786186, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

14. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1788367-1788403, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

15. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 2320347-2320383, mismatch: 1, identity: 0.973

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacagacaatgcaagtt	Protospacer
********.****************************

16. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 825128-825165, mismatch: 1, identity: 0.974

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************.************************

17. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1665052-1665089, mismatch: 1, identity: 0.974

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************.************************

18. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1980104-1980141, mismatch: 1, identity: 0.974

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************.************************

19. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 2782442-2782479, mismatch: 1, identity: 0.974

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************.************************

20. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 779120-779157, mismatch: 1, identity: 0.974

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataacgtgcaagtt	Protospacer
********.*****************************

21. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 779120-779159, mismatch: 1, identity: 0.975

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataacgtgcaagttgg	Protospacer
********.*******************************

22. spacer 9.1|2286056|25|NC_016928|CRISPRCasFinder matches to position: 1874396-1874420, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

23. spacer 9.1|2286056|25|NC_016928|CRISPRCasFinder matches to position: 2286112-2286136, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

24. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 779104-779129, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

25. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 779160-779185, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

26. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 825042-825067, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

27. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 1845551-1845576, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactatgttggggccccg	Protospacer
********* ****************

28. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 2028412-2028437, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgacagcttctatgttggggccccg	Protospacer
*** **********************

29. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 2203655-2203680, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

30. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 2320386-2320411, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

31. spacer 1.1|769671|30|NC_016928|CRISPRCasFinder matches to position: 810712-810741, mismatch: 2, identity: 0.933

cagagaaattggaacgccaatttctacagg	CRISPR spacer
caaagaaattggaacaccaatttctacagg	Protospacer
**.************.**************

32. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 183919-183937, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccccacc	Protospacer
************** * **

33. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 617003-617021, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacacc	Protospacer
**.************* **

34. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 926502-926520, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccgcccc	Protospacer
**************.*.**

35. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1145418-1145436, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacccc	Protospacer
**.*************.**

36. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1361370-1361388, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggagcccacccc	Protospacer
*********.******.**

37. spacer 2.2|946792|19|NC_016928|PILER-CR matches to position: 1700143-1700161, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggccccatcc	Protospacer
**************  ***

38. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 779232-779268, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaatgaaattctacagacaatgcaagtt	Protospacer
********.*** ************************

39. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1145381-1145417, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaaacaatgcaagtt	Protospacer
********.***************.************

40. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1286758-1286794, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
********.****************.***********

41. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1286816-1286852, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
********.****************.***********

42. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1680333-1680369, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
********.****************.***********

43. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1786094-1786130, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaaacaatgcaagtt	Protospacer
********.***************.************

44. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 1989456-1989492, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaggaaattctacagacaatgcaagtt	Protospacer
********.***.************************

45. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 2034147-2034183, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
********.****************.***********

46. spacer 4.1|1149404|37|NC_016928|PILER-CR matches to position: 2745431-2745467, mismatch: 2, identity: 0.946

agaatttcaaaaagaaattctacagacaatgcaagtt	CRISPR spacer
agaatttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
********.****************.***********

47. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 815963-816000, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacgataatgtgcaagtt	Protospacer
*************.*********.**************

48. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 881634-881671, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacgataatgtgcaagtt	Protospacer
*************.*********.**************

49. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1145551-1145588, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctggcgaaaagtcagcttacaataatgtgcaagtt	Protospacer
******.******.************************

50. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1432138-1432175, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacaataaagtgcaagtt	Protospacer
*************.************** *********

51. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1680390-1680427, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctggcgaaaagtcagcttacaataatgtgcaagtt	Protospacer
******.******.************************

52. spacer 4.2|1149459|38|NC_016928|PILER-CR matches to position: 1978648-1978685, mismatch: 2, identity: 0.947

aagctgacgaaaaatcagcttacaataatgtgcaagtt	CRISPR spacer
aagctgacgaaaagtcagcttacgataatgtgcaagtt	Protospacer
*************.*********.**************

53. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 183881-183918, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

54. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 617022-617059, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

55. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 617078-617115, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

56. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 779176-779213, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

57. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 825014-825051, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

58. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 1149687-1149724, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

59. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 2286083-2286120, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctgacagaaagtcagcttacaataatgtgcaagtt	Protospacer
******.*********************.*********

60. spacer 4.3|1149515|38|NC_016928|PILER-CR matches to position: 2320402-2320439, mismatch: 2, identity: 0.947

aagctggcagaaagtcagcttacaataacgtgcaagtt	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
********.*******************.*********

61. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 183879-183918, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

62. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 617022-617061, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

63. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 617078-617117, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

64. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 779176-779215, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

65. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 825012-825051, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

66. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 1149687-1149726, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

67. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 2286081-2286120, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctgacagaaagtcagcttacaataatgtgcaagttgg	Protospacer
******.*********************.***********

68. spacer 4.4|1149571|40|NC_016928|PILER-CR matches to position: 2320402-2320441, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

69. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 2124320-2124345, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtcttggggccccg	Protospacer
************.* ***********

70. spacer 11.1|2782414|26|NC_016928|CRISPRCasFinder matches to position: 2124658-2124683, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016928_1 1.1|769671|30|NC_016928|CRISPRCasFinder 769671-769700 30 KC139649 Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds 9669-9698 9 0.7
NC_016928_1 1.1|769671|30|NC_016928|CRISPRCasFinder 769671-769700 30 KC139636 Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds 9669-9698 9 0.7
NC_016928_1 1.1|769671|30|NC_016928|CRISPRCasFinder 769671-769700 30 NC_025443 Salmonella phage 9NA, complete genome 7835-7864 9 0.7
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP024776 Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence 3826-3857 9 0.719
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP009062 Borreliella afzelii K78 plasmid lp28-1, complete sequence 16532-16563 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP018749 Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7 15178-15209 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP028869 Borreliella garinii strain 20047 plasmid lp28-7, complete sequence 11910-11941 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP028878 Borreliella bavariensis PBi plasmid lp28-7, complete sequence 4741-4772 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP028879 Borreliella bavariensis PBi plasmid lp28-9, complete sequence 11876-11907 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP017215 Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence 11994-12025 10 0.688
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_018987 Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence 12713-12744 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_017412 Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence 17252-17283 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_017419 Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence 17030-17061 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_017408 Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence 14812-14843 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_015920 Borreliella bissettii DN127 plasmid lp56, complete sequence 16601-16632 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_011779 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence 16934-16965 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NC_001852 Borreliella burgdorferi B31 plasmid lp28-2, complete sequence 16891-16922 15 0.531
NC_016928_7 7.1|1978714|32|NC_016928|CRISPRCasFinder 1978714-1978745 32 NZ_CP017219 Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence 14876-14907 15 0.531

1. spacer 1.1|769671|30|NC_016928|CRISPRCasFinder matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

2. spacer 1.1|769671|30|NC_016928|CRISPRCasFinder matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

3. spacer 1.1|769671|30|NC_016928|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

4. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP024776 (Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence) position: , mismatch: 9, identity: 0.719

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
caaattaggatttcttttttcgaaatccttga	Protospacer
     ***.*****************.**. *

5. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP009062 (Borreliella afzelii K78 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

6. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP018749 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

7. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP028869 (Borreliella garinii strain 20047 plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

8. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP028878 (Borreliella bavariensis PBi plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

9. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP028879 (Borreliella bavariensis PBi plasmid lp28-9, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

10. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggcaacagaatttgttttttagaaattcttgt	Protospacer
. * ..******* ****** ********.  

11. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

12. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_017412 (Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

13. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_017419 (Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

14. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

15. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_015920 (Borreliella bissettii DN127 plasmid lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

16. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_011779 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

17. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NC_001852 (Borreliella burgdorferi B31 plasmid lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

18. spacer 7.1|1978714|32|NC_016928|CRISPRCasFinder matches to NZ_CP017219 (Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 747993 : 755813 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 767794 : 782304 17 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 862735 : 884236 35 Staphylococcus_phage(77.78%) terminase,integrase,coat attL 861042:861063|attR 881704:881725
DBSCAN-SWA_4 972499 : 1016217 40 Streptococcus_phage(33.33%) bacteriocin,protease,holin,transposase,tRNA NA
DBSCAN-SWA_5 1050447 : 1058902 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1316832 : 1321781 9 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 1498628 : 1580608 105 Staphylococcus_phage(84.42%) portal,capsid,integrase,protease,holin,tail,head,terminase,tRNA attL 1558444:1558458|attR 1576425:1576439
DBSCAN-SWA_8 1636435 : 1644746 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_9 1850265 : 1896193 45 Staphylococcus_phage(94.29%) protease,tRNA NA
DBSCAN-SWA_10 1901746 : 1908879 12 Staphylococcus_phage(63.64%) transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_016928.1|WP_000384172.1|1875675_1875900_-|hypothetical-protein 1875675_1875900_- 74 aa aa NA NA NA 1850265-1896193 yes