CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_015709	Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence	3 crisprs	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3	21	3
NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	1 crisprs	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	21	0
NC_015716	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP02, complete sequence	0 crisprs	RT	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015709_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015709_1

1183182-1183269

TypeI-E

I-E

Consensus_repeat	Method
GTTCATCCCCGCGTGGGCGGGGAACAC	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e

The CRISPR arrays of NC_015709_1

>merge|NC_015709|1|1183182-1183269|CRISPRCasFinder
GTTCATCCCCGCGTGGGCGGGGAACACTGCTAGTGATAACGCCACGACAAATTCTAGCCCGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|1|1|1183182-1183269|CRISPRCasFinder
GTTCATCCCCGCGTGGGCGGGGAACAC	TGCTAGTGATAACGCCACGACAAATTCTAGCCCG
GTTCATCCCCGCGTGGGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015709.1\|WP_013934298.1\|1185513_1185816_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|282822
NC_015709.1\|WP_013934290.1\|1174267_1176091_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_015709.1\|WP_013934301.1\|1189403_1190345_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_015709.1\|WP_013934292.1\|1178930_1180055_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176544
NC_015709.1\|WP_013934302.1\|1190348_1191083_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_015709.1\|WP_041581724.1\|1183806_1184526_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NC_015709.1\|WP_013934294.1\|1181176_1183027_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NC_015709.1\|WP_013934297.1\|1185157_1185487_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|225635
NC_015709.1\|WP_013934287.1\|1169327_1171319_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NC_015709.1\|WP_013934284.1\|1165458_1166373_-\|class-I-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236431
NC_015709.1\|WP_013934286.1\|1168267_1169281_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_015709.1\|WP_080558572.1\|1186797_1187748_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_015709.1\|WP_013934285.1\|1166821_1168015_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_015709.1\|WP_013934300.1\|1189114_1189423_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_015709.1\|WP_041582017.1\|1176506_1178906_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NC_015709.1\|WP_158498498.1\|1183282_1183810_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NC_015709.1\|WP_013934296.1\|1184774_1185095_-\|hypothetical-protein	unknown	unknown	unknown
NC_015709.1\|WP_013934289.1\|1172025_1172427_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NC_015709.1\|WP_013934293.1\|1180160_1181075_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176144
NC_015709.1\|WP_041581727.1\|1186026_1186770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238550

Protein	Function_ID	Function_description	E-value
NC_015709.1\|WP_013934298.1\|1185513_1185816_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|282822	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB. This family carries several different examples of type II bacterial toxins of toxin-antitoxin systems including many HigB-like ones. The fold is referred to as the RelE/YoeB/Txe/Yeeu fold suggesting all examples of these are present in this family. Several plasmids with proteic killer gene-systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of these systems results in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.	4.5282e-07
NC_015709.1\|WP_013934290.1\|1174267_1176091_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_015709.1\|WP_013934301.1\|1189403_1190345_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.10312e-147
NC_015709.1\|WP_013934292.1\|1178930_1180055_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176544	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.	2.00804e-132
NC_015709.1\|WP_013934302.1\|1190348_1191083_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.3567e-38
NC_015709.1\|WP_041581724.1\|1183806_1184526_+\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	9.79889e-56
NC_015709.1\|WP_013934294.1\|1181176_1183027_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NC_015709.1\|WP_013934297.1\|1185157_1185487_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	1.53481e-14
NC_015709.1\|WP_013934287.1\|1169327_1171319_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_015709.1\|WP_013934284.1\|1165458_1166373_-\|class-I-fructose-bisphosphate-aldolase	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	1.83629e-166
NC_015709.1\|WP_013934286.1\|1168267_1169281_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.97586e-172
NC_015709.1\|WP_080558572.1\|1186797_1187748_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.17822e-11
NC_015709.1\|WP_013934285.1\|1166821_1168015_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_015709.1\|WP_013934300.1\|1189114_1189423_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.19666e-53
NC_015709.1\|WP_041582017.1\|1176506_1178906_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.0565e-32
NC_015709.1\|WP_158498498.1\|1183282_1183810_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	6.33549e-38
NC_015709.1\|WP_013934289.1\|1172025_1172427_+\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	2.77676e-10
NC_015709.1\|WP_013934293.1\|1180160_1181075_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176144	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold. The IlvR is an activator of the upstream and divergently transcribed ilvD gene, which encodes dihydroxy acid dehydratase that participates in isoleucine, leucine, and valine biosynthesis. As in the case of other members of the LysR family, the expression of ilvR gene is repressed in the presence of its own gene product. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0939e-96
NC_015709.1\|WP_041581727.1\|1186026_1186770_+\|hypothetical-protein	gnl\|CDD\|238550	cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.	0.00277816

>NC_015709.1|WP_013934294.1|1181176_1183027_+|dihydroxy-acid-dehydratase
MPHYRSRTTTHGRNMAGARSLWRATGVKEEDFGKPIIAVANSFTQFVPGHVHLKDLGQLVAGEIEKAGGIAKEFNTIAVDDGIAMGHEGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMLMAAMRLNIPTVFVSGGPMEAGKVAVKGAERALDLIDAMVIAADDHFTDEDVKAVEQSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHSDREQLFRKAGRIIVDMARRYYEQDDATVLPRSIATLGAFENAMSLDIAMGGSTNTVLHLLATAQEGNVPFTMADIDRLSRRVPCLCKVAPAKNDVHMEDVHRAGGVMAILGELDRVGLIDTSLPTIHAPTLADALVDWDIGRSNSEAAQTFYRAAPGGIATQTAFSQSARWEELDTDRQKGVIRSAEYAFSKDGGLAVLFGNLAPEGCIVKTAGVDDSILTFRGKARVYESQDAAVAGILGNQVEPGDVVIVRYEGPKGGPGMQEMLYPTSYLKSKGLGKLCALVTDGRFSGGSSGLSIGHVSPEAAEGGLIALVETGDPIVIDIPQRIIHLDVDDALLADRRLLMESKGAQAWKPQHRKRHVSSALRAYAALTTNAARGAVRDVSQIER
>NC_015709.1|WP_013934293.1|1180160_1181075_-|LysR-family-transcriptional-regulator
MDIRQLKHFVAVAETLHFGKAAERLRITQPPLSQSIIRLEQELRAPLFLRTKRRVALTPFGEQWLRYVKKALEGIEALPEIARHLRDGAAGQLHLSFVSTADFNILPTLVRRYRSLYPEVELSLNEATSDVQITAIANGRGHVGIIIPPANASLPIGLTYHKLVSEPLIAAVPESWFRNQRFSLVQGKLSPASIIEAPIIIFPRPLAPAFYDLVMNYYASWGGYPHIAQQAIQMQTIISLVAAGMGIALVPQSLRQMARTDVHYLDLEKPAPFLETGIIWRQDDQTATLRRFLEVTREVLIIEA
>NC_015709.1|WP_013934292.1|1178930_1180055_+|glycerophosphoryl-diester-phosphodiesterase
MVTLNRRRLLQLTAANGVLFHTALWPTLAKAAPSLALKPLIFSHRGASALRPEHTLAAYGKAIIDGADYIEPDLVPTKDGHLIARHESNITDTTDVAHHTEFSSRRRKIVMDGKEQEGWFTTDFTLAEIKTLRACERLPTIRPLNTRYDGWFEIPTLEEVIDFVAAASTCSNRLIGLIPEIKNPTHFRKLGFSIEDTLLKILDSHLYTSQAPVEIQCFEDTALRYLRQKIGYTRPHWKLMFLLGGRQTIPADILAVGGKTTFGDLMTPAALKDIRQFAEAIGPSNDDLIPKTQTGQWGNPSSLIEDAHATGLLVHSYTCRPENRFLPLALRDQAGDNARNIKGSIAEIRRYLELGLDGFFTDDPAIGRLAIAET
>NC_015709.1|WP_041582017.1|1176506_1178906_+|TonB-dependent-receptor-plug-domain-containing-protein
MHKLAFSCSILALSALLPCIALAETPLVNNDPEKTNIPDKNTTEADKTSQTEDKTEAKDKGELVVTARQTHSQQSVSHVEIQRLLPGMSPIKALAILPGVVFNNADPWGNNEQNSSLYIHGFNKNQLGYTMDGVPLGDQDYGNYNGLSPQRAMISENTRSASLSSGAGALGTASTSNLGGTLEFLSSDPLSRAGGQLSQTFGSYSTFRTFARIDTGEFGEGNKAYVSWARQDARAWDFKGQQGGNQVNAKFIHEDDSNKLTLYFDWSQKIEPNEDGVVMPSSIYVRPSMYPDFNYAKNYLSANGATPTAAGLNYRNYYSDAQREDFLGYLKFTHDFSDKISWDNQFYYHHNSGVGVVAGPIQAAGLPSLFEAYFPGQDLKSVFGNSGYATRTTEYLDNRGGLISTLHYKTGNHSIEVGGWYERNNNTQARNWYALDVNSPSTPYQRPEDPLIRQYKNAFYTNSFVTHVQDSWKITPNFTFQAGFKSELVYTNGKLPIAALPGSLSPKNAITVPGGKISAVKPFLPAFGALWNVTPHEEIFANIQENMRSFEAAGYGNATPWGVTSQEAFEDFKKHGKPETSWTYETGIRTKRNIHFGPMTGFSGQLGYYHVHFSNRLLAVSTTQTNSSIVGSATILTNVGSVTTDGMDLSFTMKFGPHFSLYNALSYNHSVYNDNYNNGTTEVMTAGEKVTGVPDWAEKFVGSFDWGNFSAQFIGDVIGRRYATYTNDLSVGSYMLFSLNAGYTFHNIPHVRDLRIQGNITNLTNTKGWSTINSNQASSQFTAYPIAPRMFFLTLQAGF
>NC_015709.1|WP_013934290.1|1174267_1176091_-|phosphomethylpyrimidine-synthase-ThiC
MADTSDQNIDDIPNHVTTGPIRGSRKIYVEGKKGVRVAMREIALEPSAKEQPVRVYDCSGPYTDPNIKIDIRQGLKPIRRDWILARGDVEEYQGRDIKPEDNGQLGPDRSGGVPPFPNVNHRPLQAKAGGNVTQMHYAKKGIVTPEMEYIAIRENCGRAQMKEAMERDGEDFGANIPDFITPEFVRDEVASGRAVIAANINHPEAEPMVIGRNFLVKINANIGNSAVASDVAAEVEKMVWSIRWGADTVMDLSTGRNIHDTREWILRNSPVPIGTVPIYQALEKVGGIAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLAYIPLTARRVTGIVSRGGSIMAKWCLAHHQENFLYTHFEDICEILKRYDIAFSLGDGLRPGSIADANDRAQFAELETLGELTEIAWKHDVQVMIEGPGHVPMHKIKPNMDKELIACHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNRDDVKVGVVTYKLAAHAADLAKGHPTARLRDNALSRARFDFRWKDQFNLSLDPDTAESFHDQTLPAEGAKSAHFCSMCGPKFCSMKITKEVREFASQGMEEMSEQFKEQGSEIYLPAAE
>NC_015709.1|WP_013934289.1|1172025_1172427_+|cell-division-protein-ZapA
MAQVDVMIGGRSHQLACRDGDESRLRFLANIVDGEVAKISEQLNVAGDTRRILLAALLLADKNEDIKSMFEKLQAKNEQLEQQLQNQKQALDHSEKARITQKEERNQIAVQIEEYVERIENIVNRLDEEAHAS
>NC_015709.1|WP_013934287.1|1169327_1171319_-|transketolase
MSVPYRHLANAIRALSMDAIQAANSGHPGLPMGMADVATILFGRYLKHNPQDPTWPDRDRFILSGGHGSMLLYALLYLTGYSEPTLDDIRQFRQWGSRCAGHPENTLLAGVETTTGPLGQGIGMAAGMALAERHLNARFGDDLVNHRVWTIAGDGCLMEGINHEVVGIAARLNLGNLNVLWDDNGITIDGDVAISRKEDVMARHRACGWHVVACDGHNTESIIKAMDEAIADPRPSLIACRTTIGYGSPGKQGTPAAHGTPLGEEEILLTREALEWTSPDFTIPHHILKKWRELGTRHEDEYNNWQARLDEHKDKEEFTRIMSGNLPEAFDLTDYKNSTIASALPMATRKASELTLGILIRQVGELVGGSADLTPSNNTKPKGMTTLSAADYSGRYIHYGIREFGMSCAMNGMALHGGVIPYGGTFLAFSDYSRPAIRLSALQQTRVIYVMTHDSIGVGEDGPTHQPVEQIMSLRLIPNLTVFRPADSIETAECWELALKNTVGPSVIVLSRQNLPLLRESADENASARGAYRLRSAVAKRRVILMATGSEVSLAVEVASLLETAGFGADVVSMPSWTLFDLQPESYRNDVLPDQPQSTILRVSIEAGTTIGWERYTGINGLRYGIDVFGASAPANDLYAHFGLTAVGITNKVLAAIAGKSAR
>NC_015709.1|WP_013934286.1|1168267_1169281_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVESNAFLFKRDSAHGTYPGTVTTEGNDMVIDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTDKASAHLTAGAKKVLISAPAKGNVDRTVVFGVNHKDLTADDKIVSNASCTTNCLAPVLHVLQQKIGIERGLMTTIHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPKRDTTAEEINSILKAAADKDDLTGVLGYTDEPLVSRDFYTDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTAAQMGKSL
>NC_015709.1|WP_013934285.1|1166821_1168015_-|phosphoglycerate-kinase
MSFRTLDDIGDVKGKRVLVREDLNVPMDGDRVTDDTRLRAAIPTVNELAEKGAKVLILAHFGRPKGKPNPEMSLARIKDALAGVLGRPVHFINDIKGEAAAKAIDALNPGAVALLENTRFYAGEEKNDPELASEVAKLGDFYVNDAFSAAHRAHVSTEGLAHKLPAFAGRAMQKELEALEAALGKPTHPVAAVVGGAKVSTKLDVLTNLVSKVDHLIIGGGMANTFLAAQGVDVGKSLCEHELKDTVKGIFAAAEKTGCKIHLPSDVVVAKEFKANPPIRTIPVNEVADDEMILDVGPKAVAALTEVLKASKTLVWNGPLGAFEIAPFDKATVALAKEAAALTKAGSLVSVAGGGDTVAALNHAGVAQDFSFVSTAGGAFLEWMEGKELPGVKALEA
>NC_015709.1|WP_013934284.1|1165458_1166373_-|class-I-fructose-bisphosphate-aldolase
MSITPEVKAILDLYESDNPGTKTNLAYILNHGRLGGTGKLIILPVDQGLEHGPARSFYPNPAGYDPQYHYKLAIDGGFSAFAAPIGMLEVGASTFAGQIPTILKMNSSNSWSSVNDQAVTSCVGDALRLGCAAVGFTIYPGSDIIFEQIEEFRHIAAEARRCGLATVVWAYPRGGRLTKRGETALDVSAYSVHIAAQIGAHIIKVKLPSAHIEQPEAIPAYSGQDWSSLSSRVSHIVQSAFAGRRMVVFSGGEAKTPDALYREAEAIRDGGGNGSIMGRNVFQRPREEALALVDKIVDIYKNKG
>NC_015709.1|WP_158498498.1|1183282_1183810_+|phage-tail-protein
MFVFELSSLAPENLDRTTTWEFGSNKRLGAREALQFTGLGETVSLSGTVYAEIANALASEQNQRISLKQRIDKLIHPQISKSGISDFLTGRQDQPDQSAEIVSIDTLREMADEGQSWQLVDGTGKIYGAYVIKSISEKMKYLWQDGRPRQIDFGIELQRVDDDNTTANSSKITYA
>NC_015709.1|WP_041581724.1|1183806_1184526_+|hypothetical-protein
MTILSPDFQVIINGTDVSPKIRPRLINLDLHEYAGEQVDTLNFVLDDTDDRLEIPNIDGLIEIKIGFKGQPLVNKGKFVFESVHYVEPVKQLSITAHSVAVESAIKKRIDCAWHGTTLGAILKTIADRNHLTARIDPTLSALASGSVHQQNESDLALVQRLARERDATGTIKNNHLIFIPKGTNETATGQKLPILKIQKSAITNYSYDVTHVDARAIEAKWHSKKNAIPYRKIRRRNRH
>NC_015709.1|WP_013934296.1|1184774_1185095_-|hypothetical-protein
MKIYCLFTAVLAFASTAAIAGNYQSCRISSGMKSFCGAPFSGEAVIQDQGRYKNCRISSGMKSFCGVPFSGEAVIQDQGRYKNCRISSGMKSFCGVPFSGEAVITD
>NC_015709.1|WP_013934297.1|1185157_1185487_-|HigA-family-addiction-module-antidote-protein
MAYTLPHPQPVGGFIRRNILERNNLSVTEAAQILGVGRPALSNMLNGNSRLSERMAAAISAVFEISVETLLNIQHLTDLKEAQEITKDLIKSKKVKKFVPHQGHEIAAM
>NC_015709.1|WP_013934298.1|1185513_1185816_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIETIKHKGLKDYFKTGDLSKLPSNQPERQRLLDLLTLIQSSSEDDWEKDCASCGWEVRPHKLQGKREGQWALTTQGRWRLTFSLKGGEIYDLNYENYH
>NC_015709.1|WP_041581727.1|1186026_1186770_+|hypothetical-protein
MLIRKIKIENSLEVGNIDLDFCDENKNPYRTIIIAGGNGTGKTSVLKSIFQTISGDSKDNISGKITLEIEFEEADRPFFEKLQNHMLEYDSKLKNLDFDILDVKRKYYIKNNPFLFTLKYEDKVYKILRGNHYLNNSYQELIKCFYSKALVNFEKYISSHATGSAIDNAKVESKRTDLSLSQDIIQLFTDIRTADNEDLAKYHDSHPNEIIPEEIGNKRMQPFLEAIQYMFPNKKFKEIKQNDGFII
>NC_015709.1|WP_080558572.1|1186797_1187748_+|AAA-family-ATPase
MNDLSSGEKQIIFRGGFFLKNLSIIEGGIVLIDEPELSLHPEWQSRIVGFYHHLFSSLEACPQIIIVTHSPFVIHGALGAKTIVLQKNQENGQVAPMTEPTYPTIDGDAALFAFNIDDFLARHNEKPMVLLVEGQTDKVILTEAWSKLRPNSPMNFEIRNALGMKSIASTLNDASILFSIGDKKIVGLFDFDDAFNQWNRVFGKQPPSGEVCSGLMKKHESSSLYAMLLPVPEFRNDFASFELAGESLLCIEFLFPHDLMKDIIQETPLPCGQSKMTIKKGKESSFAEKVKTFPKEAFSAFEPLFENLERILKNEL
>NC_015709.1|WP_013934300.1|1189114_1189423_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVIVTENAPPRLRGRLALWLSEIRAGVYVGAYNRRIRERIWSETTEMIEEGNAVMAWKAPTDSGFAFEAIGVNRREAIDFDGLTLVRFKPLEKETEMPFSE
>NC_015709.1|WP_013934301.1|1189403_1190345_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFIPLKPIPLKERSAIIFLEYGQLDVIDNAIVLVDQAGVRVQIPVGGLACLMLQPGTRISHAAVALCAKVGCLLVWVGEAGVRLYASGQPGGARADKLLFQARNALDETARLNIVREMYRWRFDDDPPARRSVDQLRGMEGVRVREIYKHLAQKYGVSWQARRYDQKDWDKADIPNRCLSSATACLYGLCEAAILAAGYAPAIGFLHRGKPQSFVYDIADLYKFETVVPAAFSTAAKIAKGLAPALAPERQVRIACRDMFRKQGILEKVIPDIEKILLAGGLKPPDETEDAPEAIDPAIPREKASGDDGHRN
>NC_015709.1|WP_013934302.1|1190348_1191083_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSYFSLAELRSKDISARLNISERLLKLSSGIDPNTSEKELQYADAGHQLIWSLFDDDPTAKRDFIYRAFDEDRFLIVSSRFPKDKAEIWSLESKDYTPHLVAQKRYGFSLRVNPTIALSQPYQARSKPTDVLIHAEKQQGYSLTSQEKEDVVLEWLASRLVSRGAEIERDRCGLMNYGRHQIPRRPQKGESNMAFKSKATFSFVDIEGVLKVTHPESLQQTLLTGIGRGKAFGLGLLLLRPLSD

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Crispr_ID: NC_015709_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015709_2

1188329-1189028

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CRT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	PILER-CR

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_015709_2

>merge|NC_015709|2|1188329-1189028|CRISPRCasFinder,CRT,PILER-CR
AGGTTCATCCCCGCGTGGGCGGGGAACACAATGATCCTGAAGGCACGCCAGATTGGTGCAACGGTTCATCCCCGCGTGGGCGGGGAACACTGTACGCGGGCAAAGCATGAAGCAATCTCCTACGGTTCATCCCCGCGTGGGCGGGGAACACGAAAAACGTTAATCAGTATGTGTTAATTGCGTCGGTTCATCCCCGCGTGGGCGGGGAACACAAGGTACGGGAAAGTCTCATGTTATCGCGGCGCGGTTCATCCCCGCGTGGGCGGGGAACACTGCGACACGGACAACGATAACTGGCGTTGAGACGGTTCATCCCCGCGTGGGCGGGGAACACGCTGAAAAATAATCGTAAATATGTCGTTTTTTCGGTTCATCCCCGCGTGGGCGGGGAACACGGACAGGCAACGGAACCGCATCCGACAGCCTGCGGTTCATCCCCGCGTGGGCGGGGAACACGTAGCAAGCACTGGAATTGGATTATACAAAACCGGTTCATCCCCGCGTGGGCGGGGAACACTCTCACTGACTGGCCACCCTTGCCAGTAGAGACGGTTCATCCCCGCGTGGGCGGGGAACACACGTGCGAATACCGGAACTAGAGTTTTAGGATCGGTTCATCCCCGCGTGGGCGGGGAACACATCAATGAGATGGTTGGAAGAACTATCATCGACGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|2|2|1188329-1189028|CRISPRCasFinder
AGGTTCATCCCCGCGTGGGCGGGGAACAC	AATGATCCTGAAGGCACGCCAGATTGGTGCAA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TGTACGCGGGCAAAGCATGAAGCAATCTCCTA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GAAAAACGTTAATCAGTATGTGTTAATTGCGT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AAGGTACGGGAAAGTCTCATGTTATCGCGGCG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TGCGACACGGACAACGATAACTGGCGTTGAGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GCTGAAAAATAATCGTAAATATGTCGTTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GGACAGGCAACGGAACCGCATCCGACAGCCTG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTAGCAAGCACTGGAATTGGATTATACAAAAC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TCTCACTGACTGGCCACCCTTGCCAGTAGAGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ACGTGCGAATACCGGAACTAGAGTTTTAGGAT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATCAATGAGATGGTTGGAAGAACTATCATCGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|2|1|1188329-1189028|CRT
AGGTTCATCCCCGCGTGGGCGGGGAACAC	AATGATCCTGAAGGCACGCCAGATTGGTGCAA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TGTACGCGGGCAAAGCATGAAGCAATCTCCTA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GAAAAACGTTAATCAGTATGTGTTAATTGCGT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AAGGTACGGGAAAGTCTCATGTTATCGCGGCG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TGCGACACGGACAACGATAACTGGCGTTGAGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GCTGAAAAATAATCGTAAATATGTCGTTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GGACAGGCAACGGAACCGCATCCGACAGCCTG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTAGCAAGCACTGGAATTGGATTATACAAAAC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	TCTCACTGACTGGCCACCCTTGCCAGTAGAGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ACGTGCGAATACCGGAACTAGAGTTTTAGGAT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATCAATGAGATGGTTGGAAGAACTATCATCGA
CGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|2|1|1188330-1189028|PILER-CR
GGTTCATCCCCGCGTGGGCGGGGAACACA	ATGATCCTGAAGGCACGCCAGATTGGTGCAAC
GGTTCATCCCCGCGTGGGCGGGGAACACT	GTACGCGGGCAAAGCATGAAGCAATCTCCTAC
GGTTCATCCCCGCGTGGGCGGGGAACACG	AAAAACGTTAATCAGTATGTGTTAATTGCGTC
GGTTCATCCCCGCGTGGGCGGGGAACACA	AGGTACGGGAAAGTCTCATGTTATCGCGGCGC
GGTTCATCCCCGCGTGGGCGGGGAACACT	GCGACACGGACAACGATAACTGGCGTTGAGAC
GGTTCATCCCCGCGTGGGCGGGGAACACG	CTGAAAAATAATCGTAAATATGTCGTTTTTTC
GGTTCATCCCCGCGTGGGCGGGGAACACG	GACAGGCAACGGAACCGCATCCGACAGCCTGC
GGTTCATCCCCGCGTGGGCGGGGAACACG	TAGCAAGCACTGGAATTGGATTATACAAAACC
GGTTCATCCCCGCGTGGGCGGGGAACACT	CTCACTGACTGGCCACCCTTGCCAGTAGAGAC
GGTTCATCCCCGCGTGGGCGGGGAACACA	CGTGCGAATACCGGAACTAGAGTTTTAGGATC
GGTTCATCCCCGCGTGGGCGGGGAACACA	TCAATGAGATGGTTGGAAGAACTATCATCGAC
GGTTCATCCCCGCGTGGGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015709.1\|WP_013934298.1\|1185513_1185816_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|282822
NC_015709.1\|WP_013934292.1\|1178930_1180055_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176544
NC_015709.1\|WP_013934305.1\|1193010_1193640_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_015709.1\|WP_013934302.1\|1190348_1191083_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_015709.1\|WP_041581724.1\|1183806_1184526_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NC_015709.1\|WP_158498498.1\|1183282_1183810_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NC_015709.1\|WP_013934294.1\|1181176_1183027_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NC_015709.1\|WP_013934297.1\|1185157_1185487_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|225635
NC_015709.1\|WP_013934293.1\|1180160_1181075_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176144
NC_015709.1\|WP_013934309.1\|1200179_1200893_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_015709.1\|WP_080558572.1\|1186797_1187748_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_015709.1\|WP_013934300.1\|1189114_1189423_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_015709.1\|WP_013934307.1\|1195893_1198581_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_015709.1\|WP_013934306.1\|1193636_1195265_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_015709.1\|WP_041581727.1\|1186026_1186770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238550
NC_015709.1\|WP_013934296.1\|1184774_1185095_-\|hypothetical-protein	unknown	unknown	unknown
NC_015709.1\|WP_013934301.1\|1189403_1190345_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_015709.1\|WP_013934304.1\|1191889_1192966_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_015709.1\|WP_013934303.1\|1191079_1191886_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_015709.1\|WP_013934308.1\|1199107_1199761_+\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|224551

Protein	Function_ID	Function_description	E-value
NC_015709.1\|WP_013934298.1\|1185513_1185816_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|282822	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB. This family carries several different examples of type II bacterial toxins of toxin-antitoxin systems including many HigB-like ones. The fold is referred to as the RelE/YoeB/Txe/Yeeu fold suggesting all examples of these are present in this family. Several plasmids with proteic killer gene-systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of these systems results in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.	4.5282e-07
NC_015709.1\|WP_013934292.1\|1178930_1180055_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176544	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.	2.00804e-132
NC_015709.1\|WP_013934305.1\|1193010_1193640_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.50581e-17
NC_015709.1\|WP_013934302.1\|1190348_1191083_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.3567e-38
NC_015709.1\|WP_041581724.1\|1183806_1184526_+\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	9.79889e-56
NC_015709.1\|WP_158498498.1\|1183282_1183810_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	6.33549e-38
NC_015709.1\|WP_013934294.1\|1181176_1183027_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NC_015709.1\|WP_013934297.1\|1185157_1185487_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	1.53481e-14
NC_015709.1\|WP_013934293.1\|1180160_1181075_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176144	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold. The IlvR is an activator of the upstream and divergently transcribed ilvD gene, which encodes dihydroxy acid dehydratase that participates in isoleucine, leucine, and valine biosynthesis. As in the case of other members of the LysR family, the expression of ilvR gene is repressed in the presence of its own gene product. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0939e-96
NC_015709.1\|WP_080558572.1\|1186797_1187748_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.17822e-11
NC_015709.1\|WP_013934300.1\|1189114_1189423_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.19666e-53
NC_015709.1\|WP_013934307.1\|1195893_1198581_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.93106e-131
NC_015709.1\|WP_013934306.1\|1193636_1195265_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	4.00598e-81
NC_015709.1\|WP_041581727.1\|1186026_1186770_+\|hypothetical-protein	gnl\|CDD\|238550	cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.	0.00277816
NC_015709.1\|WP_013934309.1\|1200179_1200893_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	2.38729e-113
NC_015709.1\|WP_013934301.1\|1189403_1190345_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.10312e-147
NC_015709.1\|WP_013934304.1\|1191889_1192966_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.1362e-114
NC_015709.1\|WP_013934303.1\|1191079_1191886_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	4.87868e-36
NC_015709.1\|WP_013934308.1\|1199107_1199761_+\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|224551	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown].	3.58964e-104

>NC_015709.1|WP_080558572.1|1186797_1187748_+|AAA-family-ATPase
MNDLSSGEKQIIFRGGFFLKNLSIIEGGIVLIDEPELSLHPEWQSRIVGFYHHLFSSLEACPQIIIVTHSPFVIHGALGAKTIVLQKNQENGQVAPMTEPTYPTIDGDAALFAFNIDDFLARHNEKPMVLLVEGQTDKVILTEAWSKLRPNSPMNFEIRNALGMKSIASTLNDASILFSIGDKKIVGLFDFDDAFNQWNRVFGKQPPSGEVCSGLMKKHESSSLYAMLLPVPEFRNDFASFELAGESLLCIEFLFPHDLMKDIIQETPLPCGQSKMTIKKGKESSFAEKVKTFPKEAFSAFEPLFENLERILKNEL
>NC_015709.1|WP_041581727.1|1186026_1186770_+|hypothetical-protein
MLIRKIKIENSLEVGNIDLDFCDENKNPYRTIIIAGGNGTGKTSVLKSIFQTISGDSKDNISGKITLEIEFEEADRPFFEKLQNHMLEYDSKLKNLDFDILDVKRKYYIKNNPFLFTLKYEDKVYKILRGNHYLNNSYQELIKCFYSKALVNFEKYISSHATGSAIDNAKVESKRTDLSLSQDIIQLFTDIRTADNEDLAKYHDSHPNEIIPEEIGNKRMQPFLEAIQYMFPNKKFKEIKQNDGFII
>NC_015709.1|WP_013934298.1|1185513_1185816_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIETIKHKGLKDYFKTGDLSKLPSNQPERQRLLDLLTLIQSSSEDDWEKDCASCGWEVRPHKLQGKREGQWALTTQGRWRLTFSLKGGEIYDLNYENYH
>NC_015709.1|WP_013934297.1|1185157_1185487_-|HigA-family-addiction-module-antidote-protein
MAYTLPHPQPVGGFIRRNILERNNLSVTEAAQILGVGRPALSNMLNGNSRLSERMAAAISAVFEISVETLLNIQHLTDLKEAQEITKDLIKSKKVKKFVPHQGHEIAAM
>NC_015709.1|WP_013934296.1|1184774_1185095_-|hypothetical-protein
MKIYCLFTAVLAFASTAAIAGNYQSCRISSGMKSFCGAPFSGEAVIQDQGRYKNCRISSGMKSFCGVPFSGEAVIQDQGRYKNCRISSGMKSFCGVPFSGEAVITD
>NC_015709.1|WP_041581724.1|1183806_1184526_+|hypothetical-protein
MTILSPDFQVIINGTDVSPKIRPRLINLDLHEYAGEQVDTLNFVLDDTDDRLEIPNIDGLIEIKIGFKGQPLVNKGKFVFESVHYVEPVKQLSITAHSVAVESAIKKRIDCAWHGTTLGAILKTIADRNHLTARIDPTLSALASGSVHQQNESDLALVQRLARERDATGTIKNNHLIFIPKGTNETATGQKLPILKIQKSAITNYSYDVTHVDARAIEAKWHSKKNAIPYRKIRRRNRH
>NC_015709.1|WP_158498498.1|1183282_1183810_+|phage-tail-protein
MFVFELSSLAPENLDRTTTWEFGSNKRLGAREALQFTGLGETVSLSGTVYAEIANALASEQNQRISLKQRIDKLIHPQISKSGISDFLTGRQDQPDQSAEIVSIDTLREMADEGQSWQLVDGTGKIYGAYVIKSISEKMKYLWQDGRPRQIDFGIELQRVDDDNTTANSSKITYA
>NC_015709.1|WP_013934294.1|1181176_1183027_+|dihydroxy-acid-dehydratase
MPHYRSRTTTHGRNMAGARSLWRATGVKEEDFGKPIIAVANSFTQFVPGHVHLKDLGQLVAGEIEKAGGIAKEFNTIAVDDGIAMGHEGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMLMAAMRLNIPTVFVSGGPMEAGKVAVKGAERALDLIDAMVIAADDHFTDEDVKAVEQSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHSDREQLFRKAGRIIVDMARRYYEQDDATVLPRSIATLGAFENAMSLDIAMGGSTNTVLHLLATAQEGNVPFTMADIDRLSRRVPCLCKVAPAKNDVHMEDVHRAGGVMAILGELDRVGLIDTSLPTIHAPTLADALVDWDIGRSNSEAAQTFYRAAPGGIATQTAFSQSARWEELDTDRQKGVIRSAEYAFSKDGGLAVLFGNLAPEGCIVKTAGVDDSILTFRGKARVYESQDAAVAGILGNQVEPGDVVIVRYEGPKGGPGMQEMLYPTSYLKSKGLGKLCALVTDGRFSGGSSGLSIGHVSPEAAEGGLIALVETGDPIVIDIPQRIIHLDVDDALLADRRLLMESKGAQAWKPQHRKRHVSSALRAYAALTTNAARGAVRDVSQIER
>NC_015709.1|WP_013934293.1|1180160_1181075_-|LysR-family-transcriptional-regulator
MDIRQLKHFVAVAETLHFGKAAERLRITQPPLSQSIIRLEQELRAPLFLRTKRRVALTPFGEQWLRYVKKALEGIEALPEIARHLRDGAAGQLHLSFVSTADFNILPTLVRRYRSLYPEVELSLNEATSDVQITAIANGRGHVGIIIPPANASLPIGLTYHKLVSEPLIAAVPESWFRNQRFSLVQGKLSPASIIEAPIIIFPRPLAPAFYDLVMNYYASWGGYPHIAQQAIQMQTIISLVAAGMGIALVPQSLRQMARTDVHYLDLEKPAPFLETGIIWRQDDQTATLRRFLEVTREVLIIEA
>NC_015709.1|WP_013934292.1|1178930_1180055_+|glycerophosphoryl-diester-phosphodiesterase
MVTLNRRRLLQLTAANGVLFHTALWPTLAKAAPSLALKPLIFSHRGASALRPEHTLAAYGKAIIDGADYIEPDLVPTKDGHLIARHESNITDTTDVAHHTEFSSRRRKIVMDGKEQEGWFTTDFTLAEIKTLRACERLPTIRPLNTRYDGWFEIPTLEEVIDFVAAASTCSNRLIGLIPEIKNPTHFRKLGFSIEDTLLKILDSHLYTSQAPVEIQCFEDTALRYLRQKIGYTRPHWKLMFLLGGRQTIPADILAVGGKTTFGDLMTPAALKDIRQFAEAIGPSNDDLIPKTQTGQWGNPSSLIEDAHATGLLVHSYTCRPENRFLPLALRDQAGDNARNIKGSIAEIRRYLELGLDGFFTDDPAIGRLAIAET
>NC_015709.1|WP_013934300.1|1189114_1189423_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MMVIVTENAPPRLRGRLALWLSEIRAGVYVGAYNRRIRERIWSETTEMIEEGNAVMAWKAPTDSGFAFEAIGVNRREAIDFDGLTLVRFKPLEKETEMPFSE
>NC_015709.1|WP_013934301.1|1189403_1190345_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFIPLKPIPLKERSAIIFLEYGQLDVIDNAIVLVDQAGVRVQIPVGGLACLMLQPGTRISHAAVALCAKVGCLLVWVGEAGVRLYASGQPGGARADKLLFQARNALDETARLNIVREMYRWRFDDDPPARRSVDQLRGMEGVRVREIYKHLAQKYGVSWQARRYDQKDWDKADIPNRCLSSATACLYGLCEAAILAAGYAPAIGFLHRGKPQSFVYDIADLYKFETVVPAAFSTAAKIAKGLAPALAPERQVRIACRDMFRKQGILEKVIPDIEKILLAGGLKPPDETEDAPEAIDPAIPREKASGDDGHRN
>NC_015709.1|WP_013934302.1|1190348_1191083_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSYFSLAELRSKDISARLNISERLLKLSSGIDPNTSEKELQYADAGHQLIWSLFDDDPTAKRDFIYRAFDEDRFLIVSSRFPKDKAEIWSLESKDYTPHLVAQKRYGFSLRVNPTIALSQPYQARSKPTDVLIHAEKQQGYSLTSQEKEDVVLEWLASRLVSRGAEIERDRCGLMNYGRHQIPRRPQKGESNMAFKSKATFSFVDIEGVLKVTHPESLQQTLLTGIGRGKAFGLGLLLLRPLSD
>NC_015709.1|WP_013934303.1|1191079_1191886_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSDREFLLFRLKGPMAAFGEIAVGERRSLWDVPSKSAILGLVAAAKGLGRQDPKLLALDENLGFAVHRDVAPQKLRDFHTAQIPSEADRKKRQKAGQDISTRRGDLNTKDKLNTVISERFYQTDVAFTVALWAKSEKLVDLSLLGKFLKYPNFVLYLGRKSCPLSAPPYPKIMTASGLRKAFHFYNDDCPLKKKRDRYECERKQEPIWFETGAGLAEEEKQTSLIRVRRDALRNRALWQFSDRPEGQLPWEEPQNFAMSSVIGIEGLQ
>NC_015709.1|WP_013934304.1|1191889_1192966_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MAHFIQLHILNSYPASNLNRDDTGRPKTLKYGGAERLRISSQSLKRAFRESDIFADNLPQALGKRSIVFMKSLVDGLKAAGLDEAEAQERAESVITAAKLGKPKKEDKSKTEQLVHLGPDELALLDELVEKLSAVEKPDLKGLTILKHKPRAADIAMFGRMLADNPGYDVEAAVQVAHAFTTHRIAVEDDFYTAVDDLKNEDDLAVNGAGFLGVQQYGAGTFYLYICVNADLLLNNLDGDKALAKSTLKALIEAAAKVSPRGKQNSYASHSRAHFILEEIGTEAPRSLAQAFQCPVGRLDNDDDDYMVASIKRLKKLQENYTQAYDERIESVEMNVGNSESLPFAALVEQAQNIIDRI
>NC_015709.1|WP_013934305.1|1193010_1193640_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTKTKDEQSSQPKSHESRDLYHPIFKDWWNEFINKNNPDRNRASVAKLKRLALIGDEEIAQPDVITALEITPFRSLYRKISAFEKWNELSKKNKLARENWLTLTAYALAHVKEYAEKHPASYLGSKSKKEGDKPLMNEMRFIALMRAETESQLFVQARRLIALLNNAPVDVGELGRSLYLWFDKKEGDRIKREWARRYYNIHNVPELEA
>NC_015709.1|WP_013934306.1|1193636_1195265_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MPFNLLADPWLEVRRLSGKKDYISPCGLTDQFATDPVMALDFPRVDWNAAVSEFLIGLTFLAFPFLKREAGAWAEYFETPPTSAQLQEKWCPFLPSLNFDGNGPLAFQDFDSLEAQLPKPVSSLLIEAPGENTEKNNTDLFVKRGGVTALCQPYAAAALITLQTYAPSGGRGYRTSLRGGGPLTTLIAPLRSGQKMTRLWDKVWANIPYLENHDEKDLAAIQAQIFPWLQPTILSNKGVSISSDGRPLALAFFACPRRIRLVFTEGECSLTGQKGLVVENYRNQNPGGDYQCWQHPLSPYYRDKNKKLLPIHPHAGNSSYKDWLGWWGFNGTPAQSLKNWGSRKEEIEDILDVATPEKIEAFGYDMDKWKARQWLHAETPWLPDSHENLKESVKDFIDATDEAARAVLSTCRIALYGQEQKDGSYRIDSNAKESLKEASDQFWDITQPDFQQYLKVLKERSAQSGCLGINDIDLRQEWHKNLCQKAYSVFNAFVDVSSLTGQNPRRLVFAQDNLSKLLWLKVAQSALGLQSKQSGKSKRKAA
>NC_015709.1|WP_013934307.1|1195893_1198581_-|CRISPR-associated-helicase/endonuclease-Cas3
MNSVFLKPIEPYIKSYWGKYKTLDDLPEKMLWHPLAYHSLDVAAAMEAILDIRPRYVQEIAKKGAFSETEVKHQLILMAALHDIGKFAQNFQSKNEDLAKEISGHTLNSEDWLRYGHGDVGYTFWKKCKDRIDPTFKKNEYFDDWLHAAFSHHGTPATEINLGNAIASSAIDDAQNYIKDIFDLFGWPERKEIQRSEKNALKEATWCIAGLVILADWLGSNAEKGWFPYEKPDFSLADYWKKAQEKAKTAITEAQLAEAAIATHFDLKSYFKEDVTATPLQKWAEQQQPNKGSHLYIIEDFTGAGKTEAALILAHRLMQSGSAEGIYWALPTMATANGLYARIEKGYRALFADNALPSLVLAHSARDFHKKFQISIEGVSRYKKGSNDPDDIPAEVNCAAFFAENKKYTFLAQFGIGTIDQALIAVLPVRHNNLRLAALSRRVLIIDEAHSFDGYMTKGIEALIEFQAALGGSVIILSATLIQAQKRGFVQAFGGDYNVVERNAPFPLVTYVDPEKHSDEYPLAALRGSRRDLPVKFFSSVEQVLETILFKASQGNCVLYIRNTVSEALEAYEWLKDHAPETVKLHLFHARFCLKDRQERENEILMLLGKESTIQQRAGQIVIATQVVEQSLDLDADYMATDLCPMDLLIQRAGRLHRHTHRPDRSPPELWLVSHSAIADAPEDWVSSLFPKGQYVYSDFGQLWRTVYTLEKMGGLPCLSQSPRSLIEPVFDKNGDCPEALQQASNIACSKRNEKRSMANFNFLKIENEYKETLFEVNAKTPTRLDAEGVTLRLGCWGNGHLTPWAQAEDERLAWRLSEITLRHNQFKEVAEIEDASLNASVQKMQDQWSKHYEAPRILPLRSSPEKGVWENCIIDPSGKERKVYYSFEKGLSII
>NC_015709.1|WP_013934308.1|1199107_1199761_+|epoxyqueuosine-reductase-QueH
MNDIQYPLVSPPNKGEKVLLHSCCAPCSARIMEILSLSGINYTVFFYNPNIHPEQEYLLRKEENIHFAKKQNVPFVDGDYDQDNWFERAQGLEWEPERGMRCTLCFDIRLQRTALFAKEHGFSVMTSSLGISRWKNLNQVNDCGKRAAELYEGLTYWDFNWRKGGNSAQMIEISKREKFYQQEYCGCIYSLRDMNRRRREQGRPAIDIGKLQYGKKD
>NC_015709.1|WP_013934309.1|1200179_1200893_-|aspartate/glutamate-racemase-family-protein
MKRIGLIGGMSWESTVTYYQIINEAIREACGGLVSADLVMHSLDFSEVVALQKADRWKDAAVLLGSAGARLAHAGAECVLICTNTMHLVADTVEKMSGVTLINIVDETAAALKADGRRRPLLLATRYTMEHGFYTDRMRSHGLNVVVPEEDDRGAVHDIIFGELCQGEIKDSSRQRYLDIIEKARSKGIDSVILGCTEIPLLINERMLALPCYDSTEIHAKAAVRFSLKKNDINKAA

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Crispr_ID: NC_015709_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015709_3

1310992-1312057

Orphan

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGTGGGCGGGGAACAC	PILER-CR
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CRT

17 spacers

The CRISPR arrays of NC_015709_3

>merge|NC_015709|3|1310992-1312057|CRISPRCasFinder,PILER-CR,CRT
ACCATAATCCCCGCCTCAGCAGGGAACACTGCCGAACATGACAGAAACCCGCTTCCCCCAACGGTTCATTCCCGCGTGGGCGGGGAACACGCCACGTGGCAGGGGTGCAGATCATGGGTTCGCGGTTCATCCCCGCGTGAGCGGGGAACACTATTGTTCGCGATGTGATGAAATGAGCCAAGACGGTTCATCCCCGCGTGAGCGGGGAACACTTTCATCATTTTGGATTTAAAGAATGTCCACGCGGTTCATCCCCGCGTGGGCGGGGAACACACGTCCGGATCAAAAGCAACAACCGCCATTTTTGGTTCATCCCCGCGTGGGCGGGGAACACTCCTGCCAGCGCTGAACAATGGCACGACGAAGCGGTTCATCCCCGCGTGGGCGGGGAACACCTGTTCCGGTATCAATTAGCCCAGACATAACCCGGTTCATCCCCGCGTGGGCGGGGAACACAGATGGTCTTTGATATGAATTCGATGCTTGATCGGTTCATCCCCGCGTGGGCGGGGAACACATATCGAGCAACGCCGAAATTCATTCAAACGGCGGTTCATCCCCGCGTGGGCGGGGAACACATCCTGCCCATCAGAGCGAGATAAGGTAATTCCGGTTCATCCCCGCGTGGGCGGGGAACACCGGCATCCATAATCCCTTCTTTTTTCGCGTGGCGGTTCATCCCCGCGTGGGCGGGGAACACGTCATAATTTGGAATTAATCTATCTATTTTTTCGGTTCATCCCCGCGTGGGCGGGGAACACGTCATAATTTGGAATTAATCTATCTATTTTTTCGGTTCATCCCCGCGTGGGCGGGGAACACGATTGATAATAACACCGTCAGGATTGCGTAGCCGGTTCATCCCCGCGTGGGCGGGGAACACCTTTCTGCTGAAATCGGCAAAGTCTCGGAAGCCGGTTCATCCCCGCGTGGGCGGGGAACACATTGATAGTCCGAGCGATTAGTGCTGCGGGGGCGGTTCATCCCCGCGTGGGCGGGGAACACAGCGCCAGTCGGTGCATTGAAATCGAGATTTCCGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|3|3|1310992-1312057|CRISPRCasFinder
ACCATAATCCCCGCCTCAGCAGGGAACAC	TGCCGAACATGACAGAAACCCGCTTCCCCCAA
CGGTTCATTCCCGCGTGGGCGGGGAACAC	GCCACGTGGCAGGGGTGCAGATCATGGGTTCG
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TATTGTTCGCGATGTGATGAAATGAGCCAAGA
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TTTCATCATTTTGGATTTAAAGAATGTCCACG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ACGTCCGGATCAAAAGCAACAACCGCCATTTT
TGGTTCATCCCCGCGTGGGCGGGGAACAC	TCCTGCCAGCGCTGAACAATGGCACGACGAAG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTGTTCCGGTATCAATTAGCCCAGACATAACC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGATGGTCTTTGATATGAATTCGATGCTTGAT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATATCGAGCAACGCCGAAATTCATTCAAACGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATCCTGCCCATCAGAGCGAGATAAGGTAATTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CGGCATCCATAATCCCTTCTTTTTTCGCGTGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GATTGATAATAACACCGTCAGGATTGCGTAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTTTCTGCTGAAATCGGCAAAGTCTCGGAAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATTGATAGTCCGAGCGATTAGTGCTGCGGGGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGCGCCAGTCGGTGCATTGAAATCGAGATTTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|3|2|1311053-1312057|PILER-CR
CGGTTCATTCCCGCGTGGGCGGGGAACAC	GCCACGTGGCAGGGGTGCAGATCATGGGTTCG
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TATTGTTCGCGATGTGATGAAATGAGCCAAGA
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TTTCATCATTTTGGATTTAAAGAATGTCCACG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ACGTCCGGATCAAAAGCAACAACCGCCATTTT
TGGTTCATCCCCGCGTGGGCGGGGAACAC	TCCTGCCAGCGCTGAACAATGGCACGACGAAG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTGTTCCGGTATCAATTAGCCCAGACATAACC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGATGGTCTTTGATATGAATTCGATGCTTGAT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATATCGAGCAACGCCGAAATTCATTCAAACGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATCCTGCCCATCAGAGCGAGATAAGGTAATTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CGGCATCCATAATCCCTTCTTTTTTCGCGTGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GATTGATAATAACACCGTCAGGATTGCGTAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTTTCTGCTGAAATCGGCAAAGTCTCGGAAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATTGATAGTCCGAGCGATTAGTGCTGCGGGGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGCGCCAGTCGGTGCATTGAAATCGAGATTTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC

>NC_015709|3|2|1311053-1312057|CRT
CGGTTCATTCCCGCGTGGGCGGGGAACAC	GCCACGTGGCAGGGGTGCAGATCATGGGTTCG
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TATTGTTCGCGATGTGATGAAATGAGCCAAGA
CGGTTCATCCCCGCGTGAGCGGGGAACAC	TTTCATCATTTTGGATTTAAAGAATGTCCACG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ACGTCCGGATCAAAAGCAACAACCGCCATTTT
TGGTTCATCCCCGCGTGGGCGGGGAACAC	TCCTGCCAGCGCTGAACAATGGCACGACGAAG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTGTTCCGGTATCAATTAGCCCAGACATAACC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGATGGTCTTTGATATGAATTCGATGCTTGAT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATATCGAGCAACGCCGAAATTCATTCAAACGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATCCTGCCCATCAGAGCGAGATAAGGTAATTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CGGCATCCATAATCCCTTCTTTTTTCGCGTGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GTCATAATTTGGAATTAATCTATCTATTTTTT
CGGTTCATCCCCGCGTGGGCGGGGAACAC	GATTGATAATAACACCGTCAGGATTGCGTAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	CTTTCTGCTGAAATCGGCAAAGTCTCGGAAGC
CGGTTCATCCCCGCGTGGGCGGGGAACAC	ATTGATAGTCCGAGCGATTAGTGCTGCGGGGG
CGGTTCATCCCCGCGTGGGCGGGGAACAC	AGCGCCAGTCGGTGCATTGAAATCGAGATTTC
CGGTTCATCCCCGCGTGGGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015709.1\|WP_013934420.1\|1324047_1325856_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236861
NC_015709.1\|WP_013934421.1\|1326041_1326404_+\|hypothetical-protein	unknown	unknown	unknown
NC_015709.1\|WP_013934401.1\|1298364_1300743_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NC_015709.1\|WP_013934416.1\|1318526_1320671_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227115
NC_015709.1\|WP_158498533.1\|1309354_1309546_+\|hypothetical-protein	unknown	unknown	unknown
NC_015709.1\|WP_013934406.1\|1306842_1307826_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381307
NC_015709.1\|WP_013934411.1\|1312200_1312779_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NC_015709.1\|WP_013934415.1\|1317726_1318278_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NC_015709.1\|WP_013934403.1\|1301197_1302523_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_015709.1\|WP_013934402.1\|1300757_1301027_-\|chemotaxis-protein-CheX	unknown	unknown	unknown
NC_015709.1\|WP_013934412.1\|1312775_1314239_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NC_015709.1\|WP_013934405.1\|1305569_1306367_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_015709.1\|WP_013934418.1\|1321109_1322114_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|215219
NC_015709.1\|WP_013934422.1\|1326604_1328002_+\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NC_015709.1\|WP_013934414.1\|1316130_1317399_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NC_015709.1\|WP_013934404.1\|1303015_1305130_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_015709.1\|WP_158498501.1\|1308171_1309311_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|282094
NC_015709.1\|WP_013934409.1\|1309694_1310021_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NC_015709.1\|WP_013934419.1\|1322306_1323095_-\|hypothetical-protein	unknown	unknown	unknown
NC_015709.1\|WP_013934400.1\|1297498_1298368_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271

Protein	Function_ID	Function_description	E-value
NC_015709.1\|WP_013934401.1\|1298364_1300743_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NC_015709.1\|WP_013934416.1\|1318526_1320671_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	1.05439e-77
NC_015709.1\|WP_013934406.1\|1306842_1307826_+\|aldo/keto-reductase	gnl\|CDD\|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	2.18047e-159
NC_015709.1\|WP_013934411.1\|1312200_1312779_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	4.77885e-105
NC_015709.1\|WP_013934415.1\|1317726_1318278_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.52711e-31
NC_015709.1\|WP_013934403.1\|1301197_1302523_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.71154e-64
NC_015709.1\|WP_013934420.1\|1324047_1325856_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	4.94981e-170
NC_015709.1\|WP_013934412.1\|1312775_1314239_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NC_015709.1\|WP_013934405.1\|1305569_1306367_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.66336e-58
NC_015709.1\|WP_013934418.1\|1321109_1322114_-\|biotin-synthase-BioB	gnl\|CDD\|215219	PLN02389, PLN02389, biotin synthase.	1.40162e-150
NC_015709.1\|WP_013934422.1\|1326604_1328002_+\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.04791e-156
NC_015709.1\|WP_013934414.1\|1316130_1317399_-\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	2.39027e-128
NC_015709.1\|WP_013934404.1\|1303015_1305130_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NC_015709.1\|WP_158498501.1\|1308171_1309311_+\|hypothetical-protein	gnl\|CDD\|282094	pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V). This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI.	0.00117624
NC_015709.1\|WP_013934409.1\|1309694_1310021_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	6.53727e-19
NC_015709.1\|WP_013934400.1\|1297498_1298368_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	5.11985e-89

>NC_015709.1|WP_013934409.1|1309694_1310021_+|multidrug-efflux-SMR-transporter
MLTGWPGLIIAVFFEVAATTALRLANGIDKPLWLVMACIGYFICFTIISFVFKTLPMGIVYAVWAGGGLAIMTIISQWVFKETLDIRQIACILLILVGVIGLNLLSPA
>NC_015709.1|WP_158498533.1|1309354_1309546_+|hypothetical-protein
MAWLLVAWLITLPIDLLAFYDVMTPKVSPLYRRYYIDHSISAQDYQNRSKAPPIHHPIDWSTQ
>NC_015709.1|WP_158498501.1|1308171_1309311_+|hypothetical-protein
MLPLLLIGHILLLAATPVLLSLMHYKSSIIEITCHWDCHWYAAIAKGGYITPLIEQRDPGQDTWAFFPLFPLAVRFLSKITHLDIETSALWLNACLLPLLILATMLYAKAKNILYSAPLFCLFFLIFPLGIWYRIQYSECLYGLLLMMTLYFMQKGSIQLASIPAFLLTACRPTGMIISAVIAFFHFISAFTEPDYSGSTFHSDKKKKISFYHCLCTSQKIKALIESSSFFIISASGLAFYMIYLHQITGDAMAFSHVQIGWHRYFANPIHHLIHDIHAHHHGFALDVFALAGVALIIWGFFKGQWLESLLLTATAILSLSTGINSIHRIIFANPLAIILCWQMITPLSRPIRNTLFSIMLLSDVILTIVWLHGSAFLA
>NC_015709.1|WP_013934406.1|1306842_1307826_+|aldo/keto-reductase
MEQRLLGKTGFKIAPVVLGGNVFGWTIDEKRSFEILDAWVDAGFNAVDTADIYSAWVNGNKGGESETIIGHWLQTRPDKRDKILIFTKGGGDFGDNKRKGLAAGYIRLAVEASLKRLNIEAIDLYQSHFPDESVSDEETLGAYKDLMKEGKIKAIGASNFNAEQLAHALKISEEKGLPAYQTLQPEYNLYDRDSYDGALRELCIKKGLGVITYFSLASGFLSGKYHSKADLDKSPRGKGIEKYLTERGMHIIAALEKTAQKHNAKPAEVALAWLIARDGVTAPIASATNLQQLQSLQKAATLKLNASDIMLLDKASAPAREEATTMA
>NC_015709.1|WP_013934405.1|1305569_1306367_-|SDR-family-oxidoreductase
MIAIDLSGKTALVSGSSEGIGLGIAIRLAEAGAKVIVNGRHQEKLDKAITEVKKAAPESEVVGFVGDLGNAEGCDALIKAHPSCDILVNNVGIFNPQSDFFDTDDACWQNFFDINVMSGVRLSRAYAKDMAKRGWGRVIFIASESAFNIPVEMVHYGFSKTAQVAIARGLAKSLAGSGVTVNSVLPGPTLSEGMKKLLEPTVKKTGRSYEDVAAEFTKTARSSSIIQRAASVEEVANMVLYAASPFASATTGASLRVEGGILNYL
>NC_015709.1|WP_013934404.1|1303015_1305130_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLRQYELVDRVLSYDPNADEALINRAYVFSMKAHGNQKRASGDPYFSHPLEVAGILTDIHMDAETIVTAILHDTIEDTVATREQLEKLFGASVLRLVEGVTKLSRIEAQSVTERAAENLRKFLLAMSDDIRVLLVKLADRLHNMRTLHFIPKEEKRRRIARETMDIYAPLAERIGMYEFMREMQTLSFQFLEPEAYASITRRLEQLNKGDTGQIKRIITGIGEVLEKAGIKAKVSGRQKHPYSIWKKLEERHISFDQLSDVMAFRVIVDNTEDCYRALGILHGKWPMVPGRFKDYISTPRRNGYRSLHTAVIHNENLRIEIQIRSQAMHEQAEYGLAAHWAYKQKTAPDKFQQSGWIRDLVEILDNAESPEELLEHTKMAMYKDRIFAFTPTGELIQLPQGATPVDFAYAVHTDLGNQTVGAKINGRVVPLGTRIENGDQVDILRSAAQIPQISWLNFITTGKARAAIRRYVRNKERSDTLTLGRQLYETIIKRLPAPLSENALEAALPRLGLKEADDLFEAIALRNITDDAVIEALMPGMALHDASEPLPRLMNQAISIRGLTPGAAYELATCCHPVPGDRIVGLRRPHASIEVHVIDCPHLAETDPYDWVDLRWGDKAEGATVRLRVVVKNEAGALGVMATIFGAHKANIINLVLADRDENFHTFNVTLEVRDLQHLMRILAALRAADVVVQAEREQLLLEA
>NC_015709.1|WP_013934403.1|1301197_1302523_-|methyl-accepting-chemotaxis-protein
MLHWFSTQAPIKVKFKAILLGQLLISLLMVLAIFSSLTFTGSYLLAIASGVAGVFVTTVFSYLTGKVISGPYVNTVIRMEQLAAGDLDSPIAYRDHKDCVGRMTRAMDVFRNNALNLEAVTKGQRIVTDTLAERLNKLAQGDLASRITSPFPDLYESLRKNYNAAMNSLAEMTQTVAESSNSINTGAREISDASHDLAQRTEQHAASIEETSRTMDDVTKGVNETANNAAHVNQVMGEINHEAEQGEVVIKNTTEAMGGIEKASHEIASIIGLIDGISFQTNLLALNAGVEAARAGDAGKGFSVVAAEVRALAQRSADAASNVKGLITANAKQIADGVHLVTQAGDVLGRIIARIAEITQAIRNISESAHAQSERLQQINIAIGEMDSVTQQNAAMVEEATAAARSLAEESDNLSNQVARFDLGSGKTPSQHIAAHQLITA
>NC_015709.1|WP_013934402.1|1300757_1301027_-|chemotaxis-protein-CheX
MQALPTKLDTAQSLTLATGVRADLEQNRSIHLTGESVELVGQACLQVLLSARLSAENAGLNFIIEQPSENFRYGARILGLETLLFAPTS
>NC_015709.1|WP_013934401.1|1298364_1300743_-|chemotaxis-protein-CheA
MSFDEIQNIFFQECEEGLSNMEACFSLCRDGVQDDETINTIFRAVHSIKGGAGAFGFEQLRGFAHHYETLLDKLRNGALSLTPELLATLMAAFDMLSDHVAAASGERDTPDDSQIMARLTEAMEEDGAHPDESTQEKAKEAPAEPEKVEEEASSSIENSDFDFDDLLTSLDAPSDAVSEEAEKDDPEDMSWRLWFKPDRHALENGSDPLLLLRELDSMGADILAVDYSTLPPLDKLDPEQSYLGWWMSLPADVEEEDIRAVFEFVGDISEVVLIRAGQKNEAMPPIPEKQSLTPITAEAAEKALAALKKVDSDKNISADNSEKSRSKPQLSAPKTASKAQSIEAAAASRGQASPSVSKAAPSKQATAVKKNEPNPSSSPSSSSNTAPNAPQRQAAPALAQTIRVDLDKLDRLVNLVGELVITQAMLAQRLNDQGLSGSSELTDLDHLTRELQDSAMSIRAQPMKTVFSRVPRIIRELEGETGKRVRLDVEGEMTEVDKTVVERIGEPLTHLIRNAVDHGLETPKERIAAGKPEEGVVTLAAEHRSGRIIIRISDDGRGMNRDRILEKAIEKGIVAPDQSLSDDEIDNLIFAPGFSTAAKVTNVSGRGVGMDVVRKNVQALGGRIGIYSRPGLGSTFTLSLPLTLAVLDGMIVQVGDQTYVIPLGHIVESLQPNEGEISGIGTQEKLLNVRGSYVPIQSIGRELAVKDAETDPFKSVLIVVESDGGQAVLMVDQILDQRQVVVKSLEANYQAIAGLAGATILGDGRVALILDVDSLVARWRHDTHSSSIGMAA
>NC_015709.1|WP_013934400.1|1297498_1298368_-|protein-glutamate-O-methyltransferase-CheR
MNSLDMRDDVRQDRREFEYTQSDFEQVKHLVYQNAGITLQASKTNLVYSRLSKRLRACGLQRFSDYLALLKKDDEERTRAVTALTTNHTSFFREKHHFDHFTAHVWPQLKAKLEAGDRVRIWSAGCSSGEEPYSIAMALAGTDRNLPNWLLKHDFRILASDLAPHVLATAREGMYAMTIAQSIPPNLRNIWMESDGDQMVVHPLLKELIAFRELNLLGNWPMRHQFDVIFCRNVMIYFDDTTKNTLFQNFSKKLLGGGMLYIGHSERLIGKAASDFVSKGQTIYQKRAM
>NC_015709.1|WP_013934411.1|1312200_1312779_-|3-isopropylmalate-dehydratase-small-subunit
MKAVKIVEGRAYPLGESNIDTDIIIPAHYLKTTNRKGLAQGAFETIRAKDGNVFDNPEYKGAPILIAGDNFGCGSSREHAAWAISEMGIEAVIAPRFSDIFSGNAFKNGLLTVVLPEETVERLLEVAKTDPITIDLENQVVTTRFQDRFHFDIDPFRKRCLLEGLDEIGLTLKEQDKISRYEDVLASDRPWV
>NC_015709.1|WP_013934412.1|1312775_1314239_-|3-isopropylmalate-dehydratase-large-subunit
MTKNPRTLYEKIWDAHVIERREDGSALVYIDRHLVHEVTSPQAFESLRQTGRTMRRADRTLAVPDHNVPTTARLDQDGKPLAIADPQSAAQLAALAKNAPEFGVRYISATDPEQGIVHVVGPEQGFTLPGTTLVCGDSHTAAHGALGALAFGIGTSEVEHVMATQTLILSPSKTMEVRVEGALSPDVSAKDLILHIIHVLGTAGGTGYAIEYTGEAIRNLSIEERLTVSNMSIEAGARTGLIAPDEKTFAYLMGRPMAPKGKDWDKAVQWWRSLATDEGAIYDKTVVIKAADVQPSVTWGTSPEDVLPITGVVPDPASFADPAKQAAARRSLEYMDLKPGQKMEGLAIENVFIGSCTNSRIEDLRAAASVVWGRHVADTIKQALVVPGSGLVKRQAEAEGLDQIFKAAGFEWREPGCSMCLAMNPDKVPAGERCASTSNRNFVGRQGPGSRTHLVSPAMAAAAAVTGYLTDVRNMVPLASVKQGETA
>NC_015709.1|WP_013934414.1|1316130_1317399_-|MFS-transporter
MKASIRLLTKRRFLPLFVTQTLGAFNDNLFRTVIVLVATYGIYSDPQIETRFSAVATGIFIIPFFLFSALAGQLADTHDKAKIIRIVKIVEIGIMLAGAIGLWVYSVPLMLVGVFAMGIHSTFFGPIKYAILPQHLQKDEVLGGTGLVEAGSYLAILSGTILAGFITSRQAGIIVLIIAVLGCYASRSIPDAKAEHDGPPLDRNIVRASYRLVSGTMHIPRLFLAICSISFFWAIGSVLIIQFPPVVKNLFYADRQVASLFLAIFSIGVAIGSLLINRLLSGNVSARYAPASVLAMGVSVLGFDRVIHNWHNLPTGRFFTVSAFIHQPDIWMVFVALLAIAVTGGMFVVPLYAFLTTTVAKDHTARTVAANNIMTSGAMVFGGFSAALANSLGASTSQILWGVAAMCCIAAWLSWRLHCSCD
>NC_015709.1|WP_013934415.1|1317726_1318278_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MLTLPNVLTLSRIFAVPVLVALLWNPGCLGYICAFLLYCLMAITDYFDGYLARAQGTVSKLGIFLDPIADKIMVASVIVLLISRHPLITDFNILAAFIILLREIAVSGLREFLAELHVSLPVSRLAKWKTTFQLVAFGAIILSGATPQTPAIAEAGLVSLWIAAILTLITGWDYLRIGIKHMD
>NC_015709.1|WP_013934416.1|1318526_1320671_+|TonB-dependent-siderophore-receptor
MKIPLKKLISFKDGYKWSTFLTALALSSPLLAEENNKKYDPSELIITAKKDKDNYGQNRNTAAKIALAARDLPQTVNVVSHRLMQDQMVLSQQDALKNVPGVSFSTGDGQRDQVFIRGFNAFGDEFVDGFRDDALYFRDMSNIENIEVLKGPSAALFGRGSAGGIVNRVRKQADTNITNLTFTGGSWNDYRGQWDFGRTSKYNGNGFRLTGAIESGDSYREQQFVHRFAIAPSFMYGKGTDTVISVQADYLKDRRIADLGNPSLNGRTVNIDHPEVYYGSADAAKYDYTQSTVFSQTVNAVHHFSDNLSLRDGFRHYDYKMFRGNTSPASGVVNGLVQLSHHPAARNENGWDNQLELTQKIATGKIHQTLLYGFEVSRQSKLSTTYATYPGKSTSQEIKDSFYVDPFDPVLPNITGDDLSSITNKNRGIFYDYGLYLQDAIDFTHGFKLLAGIRWDSFSQTTLPISGSATYAHRLDHTWSPRLGLTYEPDDHQSYYVSWSKSYQPSGETLNIVAKQADLVPSETTSKEIGAKYTLLHNRLMIQIAGFIIKKTHIQATNPLDNTTMAIGTQRNEGAEFSATLDVGRDIHLIAGYAYITTKNLASATPAYVGKEGTLTPHNQGNFYITKAFGKHFGIGGGMNYVGNRWADPSNTVILPHYVTGDAMGWAQFGRYRFQLNAYNISNARYIVSGHGTNANLNMPGAPLNFRGTVSVSL
>NC_015709.1|WP_013934418.1|1321109_1322114_-|biotin-synthase-BioB
MIPVETQPTERDGTTVIPQLTEDIRYDWQEEEALALYNLPLLELVGQANAVHRRYHEAGRLQKASLLSIKTGGCPEDCGYCSQSAHHDVELTREKLMDPDAVIALAAKAKQAGAERFCMGAAWRKIRDGKEFDAVLAMIRGVRALNMEACVTLGMVNKDQAKRLAEVGLTAYNHNLDTGPDYYPKIVTTHSYQDRLETLKCVREAGIALCTGGIIGLGETPRDRVALLRVLASMAPHPESVPVNMLVPIEGTPLAQAEPVDSLDIVRMIATARLMMPQSMVRLSAGRSSLSRETQILCLLAGANSIFYGNVLLTTPNADVQADDALLEALSANV
>NC_015709.1|WP_013934419.1|1322306_1323095_-|hypothetical-protein
MNALHALAPIRDDSFAALIAHAASFFYGEKTATDFIYTVSRINEFKTYFRDFLTTALLPDNAGILLLHPKRPSDKDFDRLFNGLIEQGIITQSLDAYSWVINKADQNAQTLERIKLLIALKQKFKKKVKYLFTFELLLENAYRDKIFFVLLLLAIEYIDRSRNAQFIEDIGSIFNKDLKNTLLILIENRSYGFDKIAVFARDIDRFPSVFDKSIFINKTYSIDHYYKNEMEEVILEIKTRNINQILLAIASIILNEIKFKLL
>NC_015709.1|WP_013934420.1|1324047_1325856_-|ATP-binding-cassette-domain-containing-protein
MAPPLLSFENLGVIQGAGYLFRHLDINIQPRDRLALIGRNGAGKTTLLKLLAGVIEPDEGRRSIQPGLKLVLLEQAPSFEGCETLADYALAGADAPPRYQVEAIADQLGVDLSRSAQSASGGEQRRAAIARALAMEPDLLLMDEPTNHLDLAAIEFLEGWLNRFRGAFIVISHDRTFLTRLTRQCLWLDRGQVRRAEIGFGGFEAWMEKIQAEEVRAAEKLDAKLKLEEHWLIRGVTARRKRNQGRLTKLYEMRAERKSMTGPEGTAKLAIDTNDVRTKIVIEAKHISKSFGDREIIKDFSLRVRRGDRIGIVGANGAGKTTLLKLLMGEIEPDQGSIKRAENLEAVVIDQQRAALLPDKTLRDIIAHGGDWIEIGDQKKHVVGYLKDFLFDPALLDAKVSTLSGGERSRLLMAREFARRSNLLILDEPTNDLDLETIDLLQEVISNYSGTVLLVSHDRDFLDNVATTTLGMDGSGVIDVVAGGYSDWQKQRADRLALSQSRASAKNLEKGDATATTAAVQKPTRFKLSYKDQRDYDLLPEQIEKMEAEIASHEAALADPELYTRDPAQFSALTDKVAALRDKKEDAEMRWLELAEQVEASQ
>NC_015709.1|WP_013934421.1|1326041_1326404_+|hypothetical-protein
MKSATVFCLCAVFAHAVLIASPLRAQQRRDRDVALAAIRSGQILPLRQIEGKILPQMSGCRYLGPELHDNTIYRLKFIRNNTVIWIDVDGQSGDVISRTDATGNFSESSSETELISGTRE
>NC_015709.1|WP_013934422.1|1326604_1328002_+|aminodeoxychorismate-synthase-component-I
MWQRKLNWMNPLTAADRLSSLKGFVFLDSALSQAELGRYSYIAVDPFALFTVIKGTAYWNGKALEGDPLHALKTQLSTYKLDVQEKKFPFQGGCIGYIGYDYAQYLEKIKDYPQSSENLVEITFGFYDAIVAFDNLTQESYLLASGFPETEPEKRAERATQRLDQLTKWLNEKLGAPREEASITLSNWHSNFTQTRYIAAIEQVKEYIRQGDIYQANIAQKFTAKLPDNFNPWRLYTKLRTINPAPFAAFLSFTDLAIASASPERFIRLQGTQVEVRPIKGTAARANDSQTDKALADILLHSEKDRAENIMIVDLLRNDLSRSCIADSVEVTALCQLESYTGVHHLVSVVTGILKPELDGLDLLKGCFPGGSITGAPKIRAMEIIAETEKACRGVYCGAIGYIDFDGDFDFNIAIRTITFSEKEAVFQAGGGITLLSDPEAEYSETLTKVDKIFESFGNPLTAGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	6898-6929	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	NZ_CP023686	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence	12329-12360	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	NZ_CP023680	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence	12329-12360	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	17193-17224	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	6898-6929	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	CP036464	Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence	12329-12360	2	0.938
NC_015709_2	2.8\|1188785\|32\|NC_015709\|CRISPRCasFinder,CRT	1188785-1188816	32	CP036460	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence	12329-12360	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	25440-25471	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	NZ_CP023686	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence	34411-34442	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	NZ_CP023680	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence	30047-30078	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	35735-35766	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	25440-25471	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	CP036464	Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence	30052-30083	2	0.938
NC_015709_2	2.11\|1188968\|32\|NC_015709\|CRISPRCasFinder,CRT	1188968-1188999	32	CP036460	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence	30047-30078	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	6898-6929	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	NZ_CP023686	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence	12329-12360	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	NZ_CP023680	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence	12329-12360	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	17193-17224	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	6898-6929	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	CP036464	Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence	12329-12360	2	0.938
NC_015709_2	2.19\|1188786\|32\|NC_015709\|PILER-CR	1188786-1188817	32	CP036460	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence	12329-12360	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	25440-25471	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	NZ_CP023686	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence	34411-34442	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	NZ_CP023680	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence	30047-30078	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	35735-35766	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	25440-25471	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	CP036464	Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence	30052-30083	2	0.938
NC_015709_2	2.22\|1188969\|32\|NC_015709\|PILER-CR	1188969-1189000	32	CP036460	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence	30047-30078	2	0.938
NC_015709_2	2.6\|1188663\|32\|NC_015709\|CRISPRCasFinder,CRT	1188663-1188694	32	KC430106	Bacillus phage BPS10C, complete genome	62411-62442	5	0.844
NC_015709_2	2.6\|1188663\|32\|NC_015709\|CRISPRCasFinder,CRT	1188663-1188694	32	JN654439	Bacillus phage BPS13, complete genome	62403-62434	5	0.844
NC_015709_2	2.17\|1188664\|32\|NC_015709\|PILER-CR	1188664-1188695	32	KC430106	Bacillus phage BPS10C, complete genome	62411-62442	5	0.844
NC_015709_2	2.17\|1188664\|32\|NC_015709\|PILER-CR	1188664-1188695	32	JN654439	Bacillus phage BPS13, complete genome	62403-62434	5	0.844
NC_015709_2	2.6\|1188663\|32\|NC_015709\|CRISPRCasFinder,CRT	1188663-1188694	32	NZ_AP019552	Athalassotoga saccharophila strain NAS-01 plasmid pATS1, complete sequence	25433-25464	6	0.812
NC_015709_2	2.17\|1188664\|32\|NC_015709\|PILER-CR	1188664-1188695	32	NZ_AP019552	Athalassotoga saccharophila strain NAS-01 plasmid pATS1, complete sequence	25433-25464	6	0.812
NC_015709_3	3.17\|1311997\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311997-1312028	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2387450-2387481	6	0.812
NC_015709_3	3.17\|1311997\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311997-1312028	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1239854-1239885	6	0.812
NC_015709_2	2.7\|1188724\|32\|NC_015709\|CRISPRCasFinder,CRT	1188724-1188755	32	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	469392-469423	8	0.75
NC_015709_2	2.18\|1188725\|32\|NC_015709\|PILER-CR	1188725-1188756	32	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	469392-469423	8	0.75
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	KM389287	UNVERIFIED: Escherichia phage Phi06_2987 S clone contig00001 genomic sequence	17781-17812	8	0.75
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	JQ182730	Enterobacteria phage mEp237, complete genome	10878-10909	8	0.75
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	NC_001901	Bacteriophage N15, complete genome	10952-10983	8	0.75
NC_015709_3	3.14\|1311814\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311814-1311845	32	NZ_CP053812	Vibrio cholerae strain W6G plasmid pW6G, complete sequence	268076-268107	8	0.75
NC_015709_3	3.14\|1311814\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311814-1311845	32	NZ_CP053815	Vibrio cholerae strain W7G plasmid pW7G, complete sequence	223908-223939	8	0.75
NC_015709_2	2.1\|1188358\|32\|NC_015709\|CRISPRCasFinder,CRT	1188358-1188389	32	MN095771	Serratia phage Muldoon, complete genome	69103-69134	9	0.719
NC_015709_2	2.5\|1188602\|32\|NC_015709\|CRISPRCasFinder,CRT	1188602-1188633	32	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	112647-112678	9	0.719
NC_015709_2	2.12\|1188359\|32\|NC_015709\|PILER-CR	1188359-1188390	32	MN095771	Serratia phage Muldoon, complete genome	69103-69134	9	0.719
NC_015709_2	2.16\|1188603\|32\|NC_015709\|PILER-CR	1188603-1188634	32	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	112647-112678	9	0.719
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	64353-64384	9	0.719
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	NZ_AP019820	Enterobacter hormaechei subsp. hoffmannii strain OIPH-N069 plasmid pN069_3, complete sequence	45627-45658	9	0.719
NC_015709_3	3.3\|1311143\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311143-1311174	32	MN855781	Bacteriophage sp. isolate 39, complete genome	23100-23131	9	0.719
NC_015709_3	3.12\|1311692\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311692-1311723	32	NC_015911	Borreliella bissettii DN127 plasmid cp9, complete sequence	6471-6502	9	0.719
NC_015709_3	3.13\|1311753\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311753-1311784	32	NC_015911	Borreliella bissettii DN127 plasmid cp9, complete sequence	6471-6502	9	0.719
NC_015709_2	2.6\|1188663\|32\|NC_015709\|CRISPRCasFinder,CRT	1188663-1188694	32	MN856009	Siphoviridae sp. isolate 466, complete genome	31412-31443	10	0.688
NC_015709_2	2.17\|1188664\|32\|NC_015709\|PILER-CR	1188664-1188695	32	MN856009	Siphoviridae sp. isolate 466, complete genome	31412-31443	10	0.688
NC_015709_3	3.2\|1311082\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311082-1311113	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2551099-2551130	10	0.688
NC_015709_3	3.5\|1311265\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311265-1311296	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1569198-1569229	10	0.688
NC_015709_3	3.5\|1311265\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311265-1311296	32	NZ_CP018172	Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence	86253-86284	10	0.688
NC_015709_3	3.12\|1311692\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311692-1311723	32	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	175662-175693	10	0.688
NC_015709_3	3.12\|1311692\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311692-1311723	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	413674-413705	10	0.688
NC_015709_3	3.12\|1311692\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311692-1311723	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	44622-44653	10	0.688
NC_015709_3	3.13\|1311753\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311753-1311784	32	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	175662-175693	10	0.688
NC_015709_3	3.13\|1311753\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311753-1311784	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	413674-413705	10	0.688
NC_015709_3	3.13\|1311753\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311753-1311784	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	44622-44653	10	0.688
NC_015709_3	3.15\|1311875\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311875-1311906	32	NZ_CP021236	Pontibacter actiniarum strain DSM 19842 plasmid unnamed, complete sequence	102897-102928	10	0.688
NC_015709_3	3.4\|1311204\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311204-1311235	32	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	73645-73676	11	0.656
NC_015709_3	3.4\|1311204\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311204-1311235	32	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	75829-75860	11	0.656
NC_015709_3	3.4\|1311204\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311204-1311235	32	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	77560-77591	11	0.656
NC_015709_3	3.4\|1311204\|32\|NC_015709\|CRISPRCasFinder,PILER-CR,CRT	1311204-1311235	32	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	79507-79538	11	0.656

1. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

2. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP023686 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

3. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP023680 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

4. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

5. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

6. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to CP036464 (Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

7. spacer 2.8|1188785|32|NC_015709|CRISPRCasFinder,CRT matches to CP036460 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

8. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

9. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP023686 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

10. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP023680 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

11. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

12. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

13. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to CP036464 (Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

14. spacer 2.11|1188968|32|NC_015709|CRISPRCasFinder,CRT matches to CP036460 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

15. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

16. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to NZ_CP023686 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

17. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to NZ_CP023680 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

18. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

19. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

20. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to CP036464 (Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

21. spacer 2.19|1188786|32|NC_015709|PILER-CR matches to CP036460 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence) position: , mismatch: 2, identity: 0.938

gtagcaagcactggaattggattatacaaaac	CRISPR spacer
gtagctagcactggaattggattatataaaac	Protospacer
***** ********************.*****

22. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

23. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to NZ_CP023686 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

24. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to NZ_CP023680 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

25. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

26. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

27. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to CP036464 (Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

28. spacer 2.22|1188969|32|NC_015709|PILER-CR matches to CP036460 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence) position: , mismatch: 2, identity: 0.938

atcaatgagatggttggaagaactatcatcga	CRISPR spacer
atcaatgagatggttggtagaaatatcatcga	Protospacer
***************** **** *********

29. spacer 2.6|1188663|32|NC_015709|CRISPRCasFinder,CRT matches to KC430106 (Bacillus phage BPS10C, complete genome) position: , mismatch: 5, identity: 0.844

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
cgtgcaagataatcgtaaatatgtcgttttat	Protospacer
  ** **.********************** *

30. spacer 2.6|1188663|32|NC_015709|CRISPRCasFinder,CRT matches to JN654439 (Bacillus phage BPS13, complete genome) position: , mismatch: 5, identity: 0.844

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
cgtgcaagataatcgtaaatatgtcgttttat	Protospacer
  ** **.********************** *

31. spacer 2.17|1188664|32|NC_015709|PILER-CR matches to KC430106 (Bacillus phage BPS10C, complete genome) position: , mismatch: 5, identity: 0.844

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
cgtgcaagataatcgtaaatatgtcgttttat	Protospacer
  ** **.********************** *

32. spacer 2.17|1188664|32|NC_015709|PILER-CR matches to JN654439 (Bacillus phage BPS13, complete genome) position: , mismatch: 5, identity: 0.844

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
cgtgcaagataatcgtaaatatgtcgttttat	Protospacer
  ** **.********************** *

33. spacer 2.6|1188663|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_AP019552 (Athalassotoga saccharophila strain NAS-01 plasmid pATS1, complete sequence) position: , mismatch: 6, identity: 0.812

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
tttgccaaataatggtaaatatgttgtttttt	Protospacer
 .**  ******* **********.*******

34. spacer 2.17|1188664|32|NC_015709|PILER-CR matches to NZ_AP019552 (Athalassotoga saccharophila strain NAS-01 plasmid pATS1, complete sequence) position: , mismatch: 6, identity: 0.812

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
tttgccaaataatggtaaatatgttgtttttt	Protospacer
 .**  ******* **********.*******

35. spacer 3.17|1311997|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

-agcgccagtcggtgcattgaaatcgagatttc	CRISPR spacer
caacg-cagtcggtgcaatgaaatccagatagc	Protospacer
 *.** *********** ******* ****  *

36. spacer 3.17|1311997|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.812

-agcgccagtcggtgcattgaaatcgagatttc	CRISPR spacer
caacg-cagtcggtgcaatgaaatccagatagc	Protospacer
 *.** *********** ******* ****  *

37. spacer 2.7|1188724|32|NC_015709|CRISPRCasFinder,CRT matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggacaggcaacggaaccgcatccgacagcctg	CRISPR spacer
ggcggtgggacggaaccgcacccgccagcctg	Protospacer
**  . * .***********.*** *******

38. spacer 2.18|1188725|32|NC_015709|PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggacaggcaacggaaccgcatccgacagcctg	CRISPR spacer
ggcggtgggacggaaccgcacccgccagcctg	Protospacer
**  . * .***********.*** *******

39. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to KM389287 (UNVERIFIED: Escherichia phage Phi06_2987 S clone contig00001 genomic sequence) position: , mismatch: 8, identity: 0.75

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
gcgagttcgcgctttgatgaaatgagccaggc	Protospacer
    ******* * ***************.*

40. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to JQ182730 (Enterobacteria phage mEp237, complete genome) position: , mismatch: 8, identity: 0.75

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
gcgagttcgcgctttgatgaaatgagccaggc	Protospacer
    ******* * ***************.*

41. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_001901 (Bacteriophage N15, complete genome) position: , mismatch: 8, identity: 0.75

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
actggctcgcgctttgatgaaatgagccaggc	Protospacer
  * *.***** * ***************.*

42. spacer 3.14|1311814|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP053812 (Vibrio cholerae strain W6G plasmid pW6G, complete sequence) position: , mismatch: 8, identity: 0.75

gattgataataacaccgtcaggattgcgtagc	CRISPR spacer
ggttgataatgagaccgtcaggattatttata	Protospacer
*.********.* ************.. **

43. spacer 3.14|1311814|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP053815 (Vibrio cholerae strain W7G plasmid pW7G, complete sequence) position: , mismatch: 8, identity: 0.75

gattgataataacaccgtcaggattgcgtagc	CRISPR spacer
ggttgataatgagaccgtcaggattatttata	Protospacer
*.********.* ************.. **

44. spacer 2.1|1188358|32|NC_015709|CRISPRCasFinder,CRT matches to MN095771 (Serratia phage Muldoon, complete genome) position: , mismatch: 9, identity: 0.719

aatgatcctgaaggcacgccagattggtgcaa	CRISPR spacer
ggaaatcctcaaggcacgccacattggaacat	Protospacer
.. .***** *********** ***** .**

45. spacer 2.5|1188602|32|NC_015709|CRISPRCasFinder,CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgacacggacaacgataactggcgttgaga	CRISPR spacer
atcgacaaggacaacgacaactggcggctgaa	Protospacer
  ***** *********.******** . ..*

46. spacer 2.12|1188359|32|NC_015709|PILER-CR matches to MN095771 (Serratia phage Muldoon, complete genome) position: , mismatch: 9, identity: 0.719

aatgatcctgaaggcacgccagattggtgcaa	CRISPR spacer
ggaaatcctcaaggcacgccacattggaacat	Protospacer
.. .***** *********** ***** .**

47. spacer 2.16|1188603|32|NC_015709|PILER-CR matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgacacggacaacgataactggcgttgaga	CRISPR spacer
atcgacaaggacaacgacaactggcggctgaa	Protospacer
  ***** *********.******** . ..*

48. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 9, identity: 0.719

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
ggtacgcggcgatgtgatgaaatgcgacaaga	Protospacer
 .*   . **************** * *****

49. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_AP019820 (Enterobacter hormaechei subsp. hoffmannii strain OIPH-N069 plasmid pN069_3, complete sequence) position: , mismatch: 9, identity: 0.719

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
accggctcgcgctttgatgaaatgagccaggc	Protospacer
  . *.***** * ***************.*

50. spacer 3.3|1311143|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to MN855781 (Bacteriophage sp. isolate 39, complete genome) position: , mismatch: 9, identity: 0.719

tattgttcgcgatgtgatgaaatgagccaaga	CRISPR spacer
aattgttcgcgatgtgatttaatgcccgcaac	Protospacer
 *****************  ****  *  *.

51. spacer 3.12|1311692|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_015911 (Borreliella bissettii DN127 plasmid cp9, complete sequence) position: , mismatch: 9, identity: 0.719

gtcataatttggaattaatctatc-----tatttttt	CRISPR spacer
gtcataatttctaattaatctattgcaagaat-----	Protospacer
**********  ***********.      **

52. spacer 3.13|1311753|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_015911 (Borreliella bissettii DN127 plasmid cp9, complete sequence) position: , mismatch: 9, identity: 0.719

gtcataatttggaattaatctatc-----tatttttt	CRISPR spacer
gtcataatttctaattaatctattgcaagaat-----	Protospacer
**********  ***********.      **

53. spacer 2.6|1188663|32|NC_015709|CRISPRCasFinder,CRT matches to MN856009 (Siphoviridae sp. isolate 466, complete genome) position: , mismatch: 10, identity: 0.688

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
actgaaaaataatcataagtatgtgttgcacc	Protospacer
.*************.***.*****  * . ..

54. spacer 2.17|1188664|32|NC_015709|PILER-CR matches to MN856009 (Siphoviridae sp. isolate 466, complete genome) position: , mismatch: 10, identity: 0.688

gctgaaaaataatcgtaaatatgtcgtttttt	CRISPR spacer
actgaaaaataatcataagtatgtgttgcacc	Protospacer
.*************.***.*****  * . ..

55. spacer 3.2|1311082|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

gccacgtggcaggggtgcagatcatgggttcg	CRISPR spacer
gtgacgtggccgcggtgcagatcatgaccgtc	Protospacer
*. ******* * *************. . .

56. spacer 3.5|1311265|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

acgtccggatcaaaagcaacaaccgccatttt	CRISPR spacer
gattccggatcaaaatgaacaaccgcccacaa	Protospacer
.  ************  **********  .

57. spacer 3.5|1311265|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP018172 (Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acgtccggatcaaaagcaacaaccgccatttt	CRISPR spacer
tcctccggatcaagagcaaccaccgcttccaa	Protospacer
 * **********.****** *****. ..

58. spacer 3.12|1311692|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

59. spacer 3.12|1311692|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

60. spacer 3.12|1311692|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

61. spacer 3.13|1311753|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

62. spacer 3.13|1311753|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

63. spacer 3.13|1311753|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcataatttggaattaatctatctatttttt	CRISPR spacer
aaataaaattggaattaatctatatattataa	Protospacer
.    ** *************** **** *

64. spacer 3.15|1311875|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP021236 (Pontibacter actiniarum strain DSM 19842 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctttctgctgaaatcggcaaagtctcggaagc	CRISPR spacer
agttctgctgagatgggcaaagtctgttgaca	Protospacer
  *********.** **********   .*

65. spacer 3.4|1311204|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 11, identity: 0.656

tttcatcattttggatttaaagaatgtccacg	CRISPR spacer
agcaatcattatggatttaaaggatgtgttaa	Protospacer
  . ****** ***********.**** .  .

66. spacer 3.4|1311204|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 11, identity: 0.656

tttcatcattttggatttaaagaatgtccacg	CRISPR spacer
agcaatcattatggatttaaaggatgtgttaa	Protospacer
  . ****** ***********.**** .  .

67. spacer 3.4|1311204|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 11, identity: 0.656

tttcatcattttggatttaaagaatgtccacg	CRISPR spacer
agcaatcattatggatttaaaggatgtgttaa	Protospacer
  . ****** ***********.**** .  .

68. spacer 3.4|1311204|32|NC_015709|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 11, identity: 0.656

tttcatcattttggatttaaagaatgtccacg	CRISPR spacer
agcaatcattatggatttaaaggatgtgttaa	Protospacer
  . ****** ***********.**** .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

116782 : 128990

Thermus_phage(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013933411.1\|116782_117943_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.5e-29	37.8
WP_013933412.1\|118090_120970_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.1e-92	35.1
WP_013933413.1\|121072_121834_-	HesA/MoeB/ThiF family protein	A0A1V0SCZ9	Indivirus	5.4e-12	30.0
WP_013933414.1\|121830_122271_-	dUTP diphosphatase	K4JSC8	Caulobacter_phage	7.8e-32	52.5
WP_013933415.1\|122347_123571_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.2e-40	32.1
WP_013933416.1\|123605_125141_-	2-polyprenylphenol 6-hydroxylase	E5ES62	Bathycoccus_sp._RCC1105_virus	9.7e-29	27.1
WP_013933417.1\|125145_125874_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_013933418.1\|126218_127031_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	9.1e-26	32.3
WP_013933419.1\|127043_128990_-	transglycosylase SLT domain-containing protein	K4NWI2	Pseudomonas_phage	2.4e-08	34.7

DBSCAN-SWA_2

225212 : 235238

Lactococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013933496.1\|225212_227501_+	VacB/RNase II family 3'-5' exoribonuclease	Q0GXV6	Lactococcus_phage	9.0e-55	31.6
WP_013933497.1\|227569_228400_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_013933498.1\|228721_229495_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013933499.1\|229491_230268_-	TatD family hydrolase	NA	NA	NA	NA
WP_013933500.1\|230267_231848_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.2e-98	38.7
WP_013933501.1\|231853_232858_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	1.1e-07	24.2
WP_158498517.1\|232857_233490_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.3e-29	36.9
WP_013933503.1\|233489_234668_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.0e-43	30.2
WP_013933504.1\|234770_235238_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.2e-16	51.2

DBSCAN-SWA_3

844541 : 852737

Orpheovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013934036.1\|844541_846836_-	CHASE2 domain-containing protein	A0A2K9L0Z8	Tupanvirus	7.0e-07	32.1
WP_013934037.1\|846828_848157_-	FecR domain-containing protein	NA	NA	NA	NA
WP_013934038.1\|848200_848920_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-21	29.9
WP_013934039.1\|849139_849454_+	hypothetical protein	NA	NA	NA	NA
WP_041581695.1\|849541_850504_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.8e-42	34.0
WP_013934041.1\|850559_851180_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.8e-24	37.3
WP_013934042.1\|851176_852316_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.5e-47	37.5
WP_013934043.1\|852317_852737_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	1.1e-06	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015715_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015715_1

11752-12839

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	PILER-CR
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CRISPRCasFinder
NNNNCNNNATNNNNGTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CRT

16 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015715_1

>merge|NC_015715|1|11752-12839|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGACCCCTATGCTGATTTCAAGCGAGCTGCATCCAAAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACTTGGCCAAAGGCAGAGTTTTAGAAAACACATCACGGTTTCAATCCACGCCTCCGCGAAGGAGGCGACGACGACCTCCATTTTTCACGGGTTATCCATAACAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACATCGGTGATATTAAGGCGACCCTTGACCATTGAAGGTTTCAATCCACGCCTCCGCGAAGGAGGCGACTAATCGCAGCCCGTTCCTCGCCATGCTTCGATAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACTTTAAGGTGACGCTCTCGGTGCGGTCAGTGGGTGGTTTCAATCCACGCCTCCGCGAAGGAGGCGACATTGATGGATAATGCTTCTTGACGCTTAACCTCGTTTCAATCCACGCCTCCGCGAAGGAGGCGACCCTCAAAACTAAGAAAGGTTTTATTAATGTCTTGGTTTCAATCCACGCCTCCGCGAAGGAGGCGACATGCGTTCTGGATTGCGATCACTAGAAACGGTTTGTTTCAATCCACGCCTCCGCGAAGGAGGCGACATATGTCGCTGTATGGATTAATGGGCTGTTTGGGGTTTCAATCCACGCCTCCGCGAAGGAGGCGACAACGGGATTGTTTTTCAGTGTTTATTTAATCCGAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACCACGATTTGCCTACGAATTGAGTTTCAATAATATTGTTTCAATCCACGCCTCCGCGAAGGAGGCGACAATAACTACCACTGATAATCAACCCAAACTATATGTTTCAATCCACGCCTCCGCGAAGGAGGCGACCGAATCTGGGACACAATGCCCCTCATTGATCTTAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACATTCATGACAACAAAAGCGCAAGCATCATGAGAGTTTCAATCCACGCCTCCGCGAAGGAGGCGACGCCTCGTCTTTCACGGCCTTGGCGGCTTTATCATCGTTTCAATCCACGCCTCCGCGAAGGAGGCGAC

>NC_015715|1|1|11752-12839|PILER-CR
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCCTATGCTGATTTCAAGCGAGCTGCATCCAAA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTGGCCAAAGGCAGAGTTTTAGAAAACACATCACG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	GACGACCTCCATTTTTCACGGGTTATCCATAACA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATCGGTGATATTAAGGCGACCCTTGACCATTGAAG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TAATCGCAGCCCGTTCCTCGCCATGCTTCGATA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTTAAGGTGACGCTCTCGGTGCGGTCAGTGGGTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATTGATGGATAATGCTTCTTGACGCTTAACCTC
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCTCAAAACTAAGAAAGGTTTTATTAATGTCTTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATGCGTTCTGGATTGCGATCACTAGAAACGGTTT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATATGTCGCTGTATGGATTAATGGGCTGTTTGGG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	AACGGGATTGTTTTTCAGTGTTTATTTAATCCGA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CACGATTTGCCTACGAATTGAGTTTCAATAATATT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	AATAACTACCACTGATAATCAACCCAAACTATAT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CGAATCTGGGACACAATGCCCCTCATTGATCTTA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATTCATGACAACAAAAGCGCAAGCATCATGAGA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	GCCTCGTCTTTCACGGCCTTGGCGGCTTTATCATC
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC

>NC_015715|1|1|11752-12839|CRISPRCasFinder
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCCTATGCTGATTTCAAGCGAGCTGCATCCAAA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTGGCCAAAGGCAGAGTTTTAGAAAACACATCACG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	GACGACCTCCATTTTTCACGGGTTATCCATAACA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATCGGTGATATTAAGGCGACCCTTGACCATTGAAG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TAATCGCAGCCCGTTCCTCGCCATGCTTCGATA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTTAAGGTGACGCTCTCGGTGCGGTCAGTGGGTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATTGATGGATAATGCTTCTTGACGCTTAACCTC
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCTCAAAACTAAGAAAGGTTTTATTAATGTCTTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATGCGTTCTGGATTGCGATCACTAGAAACGGTTT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATATGTCGCTGTATGGATTAATGGGCTGTTTGGG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	AACGGGATTGTTTTTCAGTGTTTATTTAATCCGA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CACGATTTGCCTACGAATTGAGTTTCAATAATATT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	AATAACTACCACTGATAATCAACCCAAACTATAT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CGAATCTGGGACACAATGCCCCTCATTGATCTTA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATTCATGACAACAAAAGCGCAAGCATCATGAGA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	GCCTCGTCTTTCACGGCCTTGGCGGCTTTATCATC
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC

>NC_015715|1|1|11752-12825|CRT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCCTATGCTGATTTCAAGCGAGCTGCATCCAAA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTGGCCAAAGGCAGAGTTTTAGAAAACACATCACG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	GACGACCTCCATTTTTCACGGGTTATCCATAACA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATCGGTGATATTAAGGCGACCCTTGACCATTGAAG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TAATCGCAGCCCGTTCCTCGCCATGCTTCGATA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	TTTAAGGTGACGCTCTCGGTGCGGTCAGTGGGTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATTGATGGATAATGCTTCTTGACGCTTAACCTC
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CCTCAAAACTAAGAAAGGTTTTATTAATGTCTTG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATGCGTTCTGGATTGCGATCACTAGAAACGGTTT
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	ATATGTCGCTGTATGGATTAATGGGCTGTTTGGG
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	AACGGGATTGTTTTTCAGTGTTTATTTAATCCGA
GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	CACGATTTGCCTACGAATTGA
GTTTCAATAATATTGTTTCAATCCACGCCTCC	GCGAAGGAGGCGACAATAACTACCACTGATAATC
AACCCAAACTATATGTTTCAATCCACGCCTCC	GCGAAGGAGGCGACCGAATCTGGGACACAATGCC
CCTCATTGATCTTAGTTTCAATCCACGCCTCC	GCGAAGGAGGCGACATTCATGACAACAAAAGCG
CAAGCATCATGAGAGTTTCAATCCACGCCTCC	GCGAAGGAGGCGACGCCTCGTCTTTCACGGCCTTG
GCGGCTTTATCATCGTTTCAATCCACGCCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015715.1\|WP_049778893.1\|10003_10456_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|214947
NC_015715.1\|WP_158498542.1\|10779_11055_-\|hypothetical-protein	unknown	unknown	unknown
NC_015715.1\|WP_013945599.1\|1754_2084_-\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750
NC_015715.1\|WP_013945600.1\|2058_2337_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NC_015715.1\|WP_013945602.1\|5515_6817_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373965
NC_015715.1\|WP_013945612.1\|24175_24934_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NC_015715.1\|WP_049778894.1\|10483_10816_-\|hypothetical-protein	unknown	unknown	unknown
NC_015715.1\|WP_013945604.1\|7634_9662_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	unknown
NC_015715.1\|WP_013945606.1\|13349_14384_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015715.1\|WP_013945603.1\|6813_7635_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_015715.1\|WP_158498543.1\|25597_25930_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NC_015715.1\|WP_013945607.1\|14380_15052_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_015715.1\|WP_013945613.1\|25268_25574_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NC_015715.1\|WP_013945605.1\|13049_13340_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015715.1\|WP_013945611.1\|18498_20739_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015715.1\|WP_013945609.1\|16011_17763_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015715.1\|WP_013945610.1\|17759_18428_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_015715.1\|WP_013945601.1\|2401_5506_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677
NC_015715.1\|WP_013945608.1\|15055_16006_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_015715.1\|WP_041582300.1\|11080_11320_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015715.1\|WP_049778893.1\|10003_10456_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	2.21415e-12
NC_015715.1\|WP_013945599.1\|1754_2084_-\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.42418e-35
NC_015715.1\|WP_013945600.1\|2058_2337_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	7.34259e-19
NC_015715.1\|WP_013945608.1\|15055_16006_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.02728e-147
NC_015715.1\|WP_013945612.1\|24175_24934_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	9.20623e-23
NC_015715.1\|WP_013945602.1\|5515_6817_-\|hypothetical-protein	gnl\|CDD\|373965	pfam15611, EH_Signature, EH_Signature domain. This domain with a strongly conserved glutamate at the N-terminus and a histidine at the C-terminus, is found in a SWI2/SNF2 four gene operon. Its strict-neighborhood association with SWI2/SNF2 ATPase strongly suggests a function in conjunction with it. The other genes in the operon are a OmpA protein and a TM protein. This has a DNA related function along with the TerY-P triad.	2.30682e-29
NC_015715.1\|WP_013945606.1\|13349_14384_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015715.1\|WP_013945603.1\|6813_7635_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.68419e-16
NC_015715.1\|WP_158498543.1\|25597_25930_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	8.28673e-14
NC_015715.1\|WP_013945607.1\|14380_15052_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.04395e-41
NC_015715.1\|WP_013945605.1\|13049_13340_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.21705e-32
NC_015715.1\|WP_013945611.1\|18498_20739_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.19765e-50
NC_015715.1\|WP_013945609.1\|16011_17763_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_015715.1\|WP_013945601.1\|2401_5506_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.23386e-51
NC_015715.1\|WP_013945613.1\|25268_25574_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	4.50217e-17
NC_015715.1\|WP_013945610.1\|17759_18428_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.07905e-109

>NC_015715.1|WP_041582300.1|11080_11320_-|hypothetical-protein
MNLSERRLKKRLSIYRQTAEYTALLQSVDKHHILSSTLDKTEILDESSGTTTHEITSSFQMNGTIASDKKSVFGSCFLG
>NC_015715.1|WP_158498542.1|10779_11055_-|hypothetical-protein
MSMSPEVAAMFTDPMPWEDKQASRPKRPDKVARQIPCQEFDRFKPLFGQCVQDLIRGKRISMRFRDEQNIKKGDFFILVLWSMSLITVKLS
>NC_015715.1|WP_049778894.1|10483_10816_-|hypothetical-protein
MVYVADYGETIVKNGKTNARLRLIFNNGMEGENLLRSLARELYKDPNGRRISGIDGEDVFNTESTPSNISNPANPSANPIVSKNMPSSYAGLSHTPPRALNTYLIPPYHL
>NC_015715.1|WP_049778893.1|10003_10456_-|GIY-YIG-nuclease-family-protein
MQTETNITNINSQQQKTGSIYILRSLSQQPDTVSLRKNLFKIGFTTGDINRRLQNAEEQPTYLLAKVEIVRVYQCSNLNVSRFETLLHRFFGKARADIHIKDRFGKICHPKEWFILPLDVIEQAMQLIITGKITEYIYDIEMQKLVYLIG
>NC_015715.1|WP_013945604.1|7634_9662_-|MotA/TolQ/ExbB-proton-channel-family-protein
MSIFFIGTPIENLILLVSGIFKEDGFPGIVVFLMVVACFILIFQMNREFHHQKKLINKLSDKIKDFSKASFAKEGPPSIGIWLRDQKVSYDQKKILSAWDKFEKTLISTSYSDNSYILTTVQPDYFFNTDALSFGLGRWRIIPGLFVSIGLACTFLGLIAALHQMADQQITSETMQALMKIASAKFIMSLAGLVCSIVFMIFMTRMKSLPEHALHDLVSNLDEHLSPLSLEKLGQEQLDVQQQILNVQKTMANDFVAELGRSLKEDVTPAISNSISEVMHPIISKVSQHSTDSITTMATNLSQQISGGVEHALTVASERIAMAGDRIAQLVERMDLSSGRMGSEIENTIVRVSQAVDDLRNTINEEAISTSGVFVHGAEQLLATMNTTLESIRDNTGIGARAISDAATNMATASKTMRAEMEEATQSGSKAAYLQISEAGNSVSMAIDSAGQSVLSAFGNTANKVAELAGDVGEKAGRELLEPISLIAEKLERLLSMIDSGVLAMRDMSNSVQAGAHAGEIAANSFQGASSDLVNATQPIRSTTEQIENILRILSQNIESFTTIITRSAETTAISSANVLKSAKETLGGEQRSIEIALQGVEKIANRMQGQAQKLDDIDLKLGHAFEVYAMQTGEAMDSMRTHVVQMANELNKALDTLKTIVDQLQDFVPQQGHD
>NC_015715.1|WP_013945603.1|6813_7635_-|OmpA-family-protein
MQHKYHIRQEEKEEAESVFVSMTDIMVSFLFIVMLLMAFFASHYSDNQTIHHDPLEIYNAKSENIRHNIIMHLVDAVRADIKKEKIEGLEVSTQGDALRFQGNGLFASGQGGLSGNSLRIIKLLGHHLADFMPCFAVGSKGAVALSCNPDLVMLETVQVEGHTDSNGSHQNNLVLSTTRAISAFNEIVPDSKNNDMPEMLEFQNLLGQPIMAVAGYGEMRPVGNNATVVGRAANRRIDMRFIMYVPPGRDLIPHKVEDIDRISSLLKLQDSKK
>NC_015715.1|WP_013945602.1|5515_6817_-|hypothetical-protein
MTQTGTPLSQILADGVEFSALESISLDSIYCRVRLILDNYDEILPLEKDPEKILAKMLRLIETWDWSNVPLSFPLQVARFVFSQKNINFNIKIICDFLLKEILSSTKSGFLNSMVGIYIETFSKNNIFTPILGEHLFKSRLYLGHQFTDLLIKVPNFFDASTVVTTIAEFIENIDDPWESLKQIGIRHPHAPGLMSEVHSTFVRQIAPKLRERFYIDKLFTWLAPHNNAPLQNGASEALNAIMSVWEKGEPDKEIKKYLIDRITALYGHPQVDRSPVWAEVSEENERRLLHWIMGNDIRFLFQILAEVEKKHMWHDRENFWWTMYESGKIHGLWIAFNPVGFSVAKKRLKTAFTRFAEQTGKSDKSLLIMHIGNNIVVEGTYNFQIHIFNDQDPEAPKLYKPKYNVNSIREKSAKIKIMHQGKGWMDKVYKNL
>NC_015715.1|WP_013945601.1|2401_5506_-|DEAD/DEAH-box-helicase
MSFDYSYNNDRVIINIPSRNSKFLGFLQKNKNFQKVDSKNFDLAIAIADISALADELKEPYEIHQKYIILSHRLVGSVDSQTAKILNLPPITDLVLKTDVEGIVGSSSFRLRAEWHRNNQHLTVNRIGSIIETSKGRQRIPAWMMDVLNIADGCRASNNDSIDWDVLARFRQALDLGAENIKDGHASCISMTDFLSGLHVRLADRFSISPNEQGTDFKIIPFSGQKIDDSEEISENIAELKGLYLADFQRKLKQKGVLNTFRLSSNEYLVIDRAAKPVLKLLHQMQEASLEERKVFIRNPLPRLTQAIKQDLYNNGKLSNIDDLLQEELIEKSVLPAFIETIEYNSFSERVIGIGKFVPPDLGINQSTGTTWLPEVFGEEEMKYLRTKTTKELEDLETHLEQAIRNKEETVIWKDMNFSDKPNILNELRCLIISRDKYLEDNHPLEKKENLANTDSDTIVLKTQNNFEEAIYSPAIKPRFSSIPTRIPSSIVTPLKQHQRESFDWQVNAWKFGLSGIFNADEQGLGKTLQTISFLVWLNELMEFDKSRRAPILIVAPTSLLHNWENEVDNHVEKVGLGHIIRLYGRGIDIRRRDGTSGIDTKTGESLLDFEDIMRHFYEGNGHFTCIITTYTTLTNYQHSLSKIPFAVTVFDEIQALKNPASLRSQAARSINADFRIGLTGTPIENSTTDLWAIMDQLVPGHLSSLLDYQRHYSNPTKDNMKDLYQKIFCSTGQRPALALRRLKANVTCDLPSKTRLILPKEMPEVQAKAYDDIRKKLKEGQRGNALKLLHHIRTASVHPAVSSISTDQKFIAQSGRLAATFEILKRIKTRGERALVFIENLKMQYRFAALVRSEFGLERVEIINGQTSISERQKIVDRFQEHLKDSKNKFDLLILGPRAAGTGLTLTAATHVIHLSRWWNPAVEEQCNDRVHRLGQTQPVYVYVPMAIHPYYKSKSFDCLLHNLMQKKRRLAQNILWPMADTANDVSQLQAQLINDENILEVGDCVKNAMIGMYADEDVLCPTPDNNGAFLYI
>NC_015715.1|WP_013945600.1|2058_2337_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MPTAKTMIHVRVADDLKEQVSATLASMGLSVSEAVRLFLHRVVAEQKFPFELRVPNAETRLAMSETDEIIKSRQGRFSNSKELIDGLEAHSR
>NC_015715.1|WP_013945599.1|1754_2084_-|type-II-toxin-antitoxin-system-YafQ-family-toxin
MALKRTADSKRASLPRSSDYTKSFLKDWKHLSRSGRYDLNRLKSVMMLLIENDEPLPAEWLDHPLKGEMAAYRECHIGGDFLLIYRIDDSRQPEMVIFVRTGTHSELLE
>NC_015715.1|WP_013945605.1|13049_13340_-|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVSTTEGNGAKRLRAVAKACRDFGQRVQFSVFEIEVDPAQWVKLKARLEDIILPTVDSLRYYYLGAHWQKRIEHVGAKSATDLNAPLII
>NC_015715.1|WP_013945606.1|13349_14384_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTMYITTEGANLRKDGENIVAEIDGTERSRVPLHMVSAVVVFGAVFVTPPLMAALASAGITLTFLDRNGRFQARLEGPISGNVLLRRAQYRVSDQSKEIVRFFLIGKIFNQRAVLRRALRDYGSDYSPQERDRLETVTDRLGYIIRRVEYSDSTIDLLRGSEGEAAALYFSVFDYLIRSPDTTMRWTGRSRRPPRDRVNAILSFLYTLLTHDCRSALESIGLDPAVGFLHRDRPGRPSLALDLMEELRPVLADRLALSLINRRQLRSKDFILQDGGAVLMTDDCRRTVLIAWQERKRAEKQHVFLDEKVPFGLVPYIQAQMLARHIRGDIDAYPPWFWK
>NC_015715.1|WP_013945607.1|14380_15052_-|CRISPR-associated-protein-Cas4
MVDNIPKTSKIDGEPIPLSALQHAIYCLRQAALIHLERAWADNRFTAEGHVLHAVADKIGHRKVRGIRRVMALPIMSRRLNILGVADIVEFLPDSTGETAFPLEYKRGKPKPHRADEVQLCAQAFCLEEMTGRSVLEGALFYAQTKRRVIVPFDDELRNLTETTIVALRNILLSGETPPPTNRRERCKACSLIEICRPKIVARPVRIWRAHMVDSMTSFGEDI
>NC_015715.1|WP_013945608.1|15055_16006_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTVITNRYDFALVFDVVNGNPNGDPDAGNLPRVDPETNRGLVTDVSLKRKIRNYVDLARHAEEGFHIYVEEGAILNNKNREAYTAIRGDDLKSGKGGKLNPENDGEAKKLTDFMCRNFFDVRCFGAVMATGVNCGQVKGPVQMSFARSVEPILPLEITITRMAATNEAEKKKGSEGDDSNSRSDNRTMGRKHIVPYGLYVAHGFISAKFAERTGFSEQDLQLLFDALKNMFEHDRSAARGEMATRKLIVFKHENALGNAPAHILFDRIKIGRSIDNQIHPIDSRLDNLPPARAFSDYIVDIDRENFPAGVEILELI
>NC_015715.1|WP_013945609.1|16011_17763_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSVIASLVEAYKRFPDTPPFGYSAEQISYVISLNDDGTVAHVVDLRVEDGKKRIPRKMFVPHSVKRAANITSNFLWDKTSYVLGITAKEAKRTEDEHRAFVEKHINAIGDSTDAGLRAFRLFLEGWRPEYFTGPVWLDEMKDQNVVFALESNRLKNIYLHDSDAAKLLWSRIFSEDEKKNDICLVTGEAGNIVRLHPSIKGVWGAQSSGATLISFNLESFTSYGHKQGRNAPTSEAAVFAYTTMLNYFLDRGSHHRLQIGDASTVFWADAGDKQAAEDAESLFYTSIDIDDLHQKEEISTNRLRETLARLRRGEPIELVEPELAKGVHFYILGLAPNAARLSVRFFYSDNFCDLIRNYQRFVSDMRIEPPPREEYPPLSRYLLETAVLGKRENIVPNLAGEWFRSILTGSSYPLTLMSSVIRRIRADGQVNGLRVGILKALLVRNFNRKDVPVALDPDNINKGYLLGRLFAVYEQIQTAALGSKVNATIKDKFYGSASAQPRKVFPVLDKGSANHLSKIGKEKPGFRIVLEKTVASIMEKMRPDADPFPTSLAAQDQALFGLGYYHQRSEFFKKANNTAISEE
>NC_015715.1|WP_013945610.1|17759_18428_-|type-I-C-CRISPR-associated-protein-Cas5
MSYGIRLSVWGNNACFTRPEFKVERVSYDVMTPSAARGILEAIHWKPAIRWIIDAIHVLKPIRFQNIRRNEVGSKISPNKVKSAIKRGHLEGLNLLVDKDRQQRASAILVAPAYVIEAHFVLTNKAGKEDNEGKHLDIFKRRAVRGQCFHQPCLGVREFAAYFKLLDDSEQIPTAIPVDQDLGFMLFDIDHAKAGHPPMFFRAIMEQGIVKIPSPNSPEVRR
>NC_015715.1|WP_013945611.1|18498_20739_-|CRISPR-associated-helicase/endonuclease-Cas3
MTTYYAHSGGHLDKSDWQTIPDHAFSTAKLAAEMARPFGLQQAAFVAGLFHDLGKYCTAFQKRLEGDNIAVDHSTAGAIELLNITKGRNKGMAELISYAILGHHTGLPDRSNETKTCYNQRILQSSQLDLVWKKDLKPEVSDLSPEMVKQFSGGLKEIAFSYAFMGRMIFSCLVDADFKDTEAFYAKIGQILPNREWPQLNELIDPFITRFEKYIASLPKKGELNQLRSDILSYVRQGANHAAGLFTLTVPTGGGKTLASLGFALDHAKQHGHRRIIYAIPFTSIIDQTSAIFRSVLGDEYVLEHHAAMDIEISGTKNTEQKDKLKLATEDWIAPVVVTTTIQLFESLFSARSSRARKLHHIAGSIIILDEAQTLPRHLLLPIMRVLDELASHYGCTIVLCTATQPMLGRRPGFENGLPIEGRELAPDPLHLAGKLARNQVKYGGIMDNSALVEALRVNSQILIVVNSRRHALELYNLAKEADIDGLVHLTTRHYAVHRRRILADIRNRLEIGQPCRLISTSLIEAGVDVDFPVGFRAEAGLDQIIQTAGRVNREGKRKKEDSLVTVFTSPDYPPPREIKDLIGDMGRIIGNHENMASPMAVEDYFREVYWRLADGLDEKKILDRFILSKSATDFAYRQVGTDFRMIENGMAPVIVAIEDKAKKAVESLRVKNIPSSKIARELQGYIVQISPKDRDALIQNGQARFEEPELRGDQFAILQKNDFYQEDVGLIWENYDHLSVDDMLI
>NC_015715.1|WP_013945612.1|24175_24934_-|helix-turn-helix-domain-containing-protein
MKRTADLPHHPPPVVGFADCYVGGFVDGFHTHDRGQLSVFQTGTVTVNTHNSSFVLGPSQGMWIPANTLHEATCRTDLVFQVIYVDQCLTNDDLSCKIFDVSSLMQGLVDEIIAMQFAFMMNTRMSTIARLLIDEIERAPRIAERLLFPSDRRLRRVCDAIIAQPGDCHDIDYWAREAGMARRTFTRLFQLEIGMGFAAWRRRVRVIEAASRIASGQPIAKVAYDLGYENAGSFSTMFHRTFGVVPSALRSS
>NC_015715.1|WP_013945613.1|25268_25574_-|helix-turn-helix-domain-containing-protein
MEGFNLVDDIKQGLTEAIAHAKGDLPDSDFRIHKVEVKDLDVSAIRKRTGLSQSQFAQNIGVSKHTLIGWEHKRRKPNGASKVLLNLINKKPDIVQEFLTL
>NC_015715.1|WP_158498543.1|25597_25930_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MMALYTIAQTPLFIKRSQQIMTESEIENAINYIASHPNAGVSLGGGLRKVRIPREGSGKSGGFRIILVFGGEHMPVYLLTVYAKSEKDNISSNEKKELIALSKILISSFN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015715_1	1.1\|11784\|33\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	11784-11816	33	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	11784-11816	0	1.0
NC_015715_1	1.2\|11849\|35\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	11849-11883	35	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	11849-11883	0	1.0
NC_015715_1	1.3\|11916\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	11916-11949	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	11916-11949	0	1.0
NC_015715_1	1.4\|11982\|35\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	11982-12016	35	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	11982-12016	0	1.0
NC_015715_1	1.5\|12049\|33\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12049-12081	33	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12049-12081	0	1.0
NC_015715_1	1.6\|12114\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12114-12147	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12114-12147	0	1.0
NC_015715_1	1.7\|12180\|33\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12180-12212	33	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12180-12212	0	1.0
NC_015715_1	1.8\|12245\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12245-12278	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12245-12278	0	1.0
NC_015715_1	1.9\|12311\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12311-12344	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12311-12344	0	1.0
NC_015715_1	1.10\|12377\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12377-12410	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12377-12410	0	1.0
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12443-12476	0	1.0
NC_015715_1	1.12\|12509\|35\|NC_015715\|PILER-CR,CRISPRCasFinder	12509-12543	35	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12509-12543	0	1.0
NC_015715_1	1.13\|12576\|34\|NC_015715\|PILER-CR,CRISPRCasFinder	12576-12609	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12576-12609	0	1.0
NC_015715_1	1.14\|12642\|34\|NC_015715\|PILER-CR,CRISPRCasFinder	12642-12675	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12642-12675	0	1.0
NC_015715_1	1.15\|12708\|33\|NC_015715\|PILER-CR,CRISPRCasFinder	12708-12740	33	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12708-12740	0	1.0
NC_015715_1	1.16\|12773\|35\|NC_015715\|PILER-CR,CRISPRCasFinder	12773-12807	35	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12773-12807	0	1.0
NC_015715_1	1.17\|12509\|21\|NC_015715\|CRT	12509-12529	21	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12509-12529	0	1.0
NC_015715_1	1.18\|12562\|34\|NC_015715\|CRT	12562-12595	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12562-12595	0	1.0
NC_015715_1	1.19\|12628\|34\|NC_015715\|CRT	12628-12661	34	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12628-12661	0	1.0
NC_015715_1	1.20\|12694\|33\|NC_015715\|CRT	12694-12726	33	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12694-12726	0	1.0
NC_015715_1	1.21\|12759\|35\|NC_015715\|CRT	12759-12793	35	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	12759-12793	0	1.0
NC_015715_1	1.16\|12773\|35\|NC_015715\|PILER-CR,CRISPRCasFinder	12773-12807	35	NZ_CP010683	Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence	22025-22059	7	0.8
NC_015715_1	1.16\|12773\|35\|NC_015715\|PILER-CR,CRISPRCasFinder	12773-12807	35	NZ_CP010718	Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence	22025-22059	7	0.8
NC_015715_1	1.16\|12773\|35\|NC_015715\|PILER-CR,CRISPRCasFinder	12773-12807	35	NZ_CP041157	Leisingera aquaemixtae strain R2C4 plasmid unnamed2, complete sequence	58229-58263	7	0.8
NC_015715_1	1.8\|12245\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12245-12278	34	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	84224-84257	9	0.735
NC_015715_1	1.8\|12245\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12245-12278	34	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	103893-103926	9	0.735
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	219579-219612	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	56289-56322	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	51215-51248	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	18835-18868	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	KP899803	Salmonella enterica strain 8025 plasmid p8025, complete sequence	177106-177139	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	191042-191075	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	986-1019	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	99714-99747	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	14611-14644	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	58438-58471	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	205839-205872	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	308314-308347	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	60300-60333	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NC_019360	Citrobacter freundii plasmid pNDM-CIT, complete sequence	215563-215596	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	KY320277	Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence	12632-12665	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	332808-332841	11	0.676
NC_015715_1	1.11\|12443\|34\|NC_015715\|PILER-CR,CRISPRCasFinder,CRT	12443-12476	34	NZ_MF072964	Citrobacter freundii strain P10159 plasmid pP10159-4, complete sequence	224019-224052	11	0.676

1. spacer 1.1|11784|33|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

ccctatgctgatttcaagcgagctgcatccaaa	CRISPR spacer
ccctatgctgatttcaagcgagctgcatccaaa	Protospacer
*********************************

2. spacer 1.2|11849|35|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

ttggccaaaggcagagttttagaaaacacatcacg	CRISPR spacer
ttggccaaaggcagagttttagaaaacacatcacg	Protospacer
***********************************

3. spacer 1.3|11916|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gacgacctccatttttcacgggttatccataaca	CRISPR spacer
gacgacctccatttttcacgggttatccataaca	Protospacer
**********************************

4. spacer 1.4|11982|35|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

atcggtgatattaaggcgacccttgaccattgaag	CRISPR spacer
atcggtgatattaaggcgacccttgaccattgaag	Protospacer
***********************************

5. spacer 1.5|12049|33|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

taatcgcagcccgttcctcgccatgcttcgata	CRISPR spacer
taatcgcagcccgttcctcgccatgcttcgata	Protospacer
*********************************

6. spacer 1.6|12114|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaggtgacgctctcggtgcggtcagtgggtg	CRISPR spacer
tttaaggtgacgctctcggtgcggtcagtgggtg	Protospacer
**********************************

7. spacer 1.7|12180|33|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

attgatggataatgcttcttgacgcttaacctc	CRISPR spacer
attgatggataatgcttcttgacgcttaacctc	Protospacer
*********************************

8. spacer 1.8|12245|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

cctcaaaactaagaaaggttttattaatgtcttg	CRISPR spacer
cctcaaaactaagaaaggttttattaatgtcttg	Protospacer
**********************************

9. spacer 1.9|12311|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

atgcgttctggattgcgatcactagaaacggttt	CRISPR spacer
atgcgttctggattgcgatcactagaaacggttt	Protospacer
**********************************

10. spacer 1.10|12377|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

atatgtcgctgtatggattaatgggctgtttggg	CRISPR spacer
atatgtcgctgtatggattaatgggctgtttggg	Protospacer
**********************************

11. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
aacgggattgtttttcagtgtttatttaatccga	Protospacer
**********************************

12. spacer 1.12|12509|35|NC_015715|PILER-CR,CRISPRCasFinder matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

cacgatttgcctacgaattgagtttcaataatatt	CRISPR spacer
cacgatttgcctacgaattgagtttcaataatatt	Protospacer
***********************************

13. spacer 1.13|12576|34|NC_015715|PILER-CR,CRISPRCasFinder matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

aataactaccactgataatcaacccaaactatat	CRISPR spacer
aataactaccactgataatcaacccaaactatat	Protospacer
**********************************

14. spacer 1.14|12642|34|NC_015715|PILER-CR,CRISPRCasFinder matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

cgaatctgggacacaatgcccctcattgatctta	CRISPR spacer
cgaatctgggacacaatgcccctcattgatctta	Protospacer
**********************************

15. spacer 1.15|12708|33|NC_015715|PILER-CR,CRISPRCasFinder matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

attcatgacaacaaaagcgcaagcatcatgaga	CRISPR spacer
attcatgacaacaaaagcgcaagcatcatgaga	Protospacer
*********************************

16. spacer 1.16|12773|35|NC_015715|PILER-CR,CRISPRCasFinder matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gcctcgtctttcacggccttggcggctttatcatc	CRISPR spacer
gcctcgtctttcacggccttggcggctttatcatc	Protospacer
***********************************

17. spacer 1.17|12509|21|NC_015715|CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

cacgatttgcctacgaattga	CRISPR spacer
cacgatttgcctacgaattga	Protospacer
*********************

18. spacer 1.18|12562|34|NC_015715|CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaaggaggcgacaataactaccactgataatc	CRISPR spacer
gcgaaggaggcgacaataactaccactgataatc	Protospacer
**********************************

19. spacer 1.19|12628|34|NC_015715|CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaaggaggcgaccgaatctgggacacaatgcc	CRISPR spacer
gcgaaggaggcgaccgaatctgggacacaatgcc	Protospacer
**********************************

20. spacer 1.20|12694|33|NC_015715|CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaaggaggcgacattcatgacaacaaaagcg	CRISPR spacer
gcgaaggaggcgacattcatgacaacaaaagcg	Protospacer
*********************************

21. spacer 1.21|12759|35|NC_015715|CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaaggaggcgacgcctcgtctttcacggccttg	CRISPR spacer
gcgaaggaggcgacgcctcgtctttcacggccttg	Protospacer
***********************************

22. spacer 1.16|12773|35|NC_015715|PILER-CR,CRISPRCasFinder matches to NZ_CP010683 (Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence) position: , mismatch: 7, identity: 0.8

gcctcgtctttcacggccttggcggctttatcatc	CRISPR spacer
tcctggtctttcacggctttggcggcttcttcctt	Protospacer
 *** ************.**********. ** *.

23. spacer 1.16|12773|35|NC_015715|PILER-CR,CRISPRCasFinder matches to NZ_CP010718 (Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence) position: , mismatch: 7, identity: 0.8

gcctcgtctttcacggccttggcggctttatcatc	CRISPR spacer
tcctggtctttcacggctttggcggcttcttcctt	Protospacer
 *** ************.**********. ** *.

24. spacer 1.16|12773|35|NC_015715|PILER-CR,CRISPRCasFinder matches to NZ_CP041157 (Leisingera aquaemixtae strain R2C4 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

gcctcgtctttcacggccttggcggctttatcatc	CRISPR spacer
tcctggtctttcacggctttggcggcttcttcctt	Protospacer
 *** ************.**********. ** *.

25. spacer 1.8|12245|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 9, identity: 0.735

cctcaaaactaagaaaggttttattaatgtcttg	CRISPR spacer
agttaaaactaagaaaggtttaattactggagtt	Protospacer
  *.***************** **** **   *

26. spacer 1.8|12245|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 9, identity: 0.735

cctcaaaactaagaaaggttttattaatgtcttg	CRISPR spacer
agttaaaactaagaaaggtttaattactggagtt	Protospacer
  *.***************** **** **   *

27. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

28. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

29. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

30. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

31. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to KP899803 (Salmonella enterica strain 8025 plasmid p8025, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

32. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

33. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

34. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

35. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

36. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

37. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

38. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

39. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

40. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NC_019360 (Citrobacter freundii plasmid pNDM-CIT, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

41. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to KY320277 (Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

42. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

43. spacer 1.11|12443|34|NC_015715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF072964 (Citrobacter freundii strain P10159 plasmid pP10159-4, complete sequence) position: , mismatch: 11, identity: 0.676

aacgggattgtttttcagtgtttatttaatccga	CRISPR spacer
taaacatttgtttttaattgtttatttaatcttt	Protospacer
 * . . ******** * *************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015709

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection