CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015634	Bacillus coagulans 2-6, complete sequence	7 crisprs	cas14j,cas8c,csa3,cas3,DEDDh,RT,DinG,cas2,cas1,cas4,cas5,cas7b,cas8b1,PrimPol	0	14	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015634_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_1

1070861-1070954

Orphan

Consensus_repeat	Method
GTGTAAAGGCAACAAAGGGCTTGTTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015634_1

>merge|NC_015634|1|1070861-1070954|CRISPRCasFinder
GTGTAAAGGCAACAAAGGGCTTGTTTCGCGCATCGGACAGTTATAAGTTATGCCACCATTTCTTTGTGTAAAGGCAACAAAGGGCTTGTTTCGC

>NC_015634|1|1|1070861-1070954|CRISPRCasFinder
GTGTAAAGGCAACAAAGGGCTTGTTTCGC	GCATCGGACAGTTATAAGTTATGCCACCATTTCTTT
GTGTAAAGGCAACAAAGGGCTTGTTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013858971.1\|1073252_1074710_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_015634.1\|WP_013858962.1\|1063217_1063718_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|237470
NC_015634.1\|WP_013858972.1\|1074715_1075156_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_049783532.1\|1063860_1064814_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NC_015634.1\|WP_041818914.1\|1062620_1063133_+\|RsfA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274342
NC_015634.1\|WP_017553868.1\|1062272_1062446_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NC_015634.1\|WP_041818920.1\|1081048_1082338_+\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NC_015634.1\|WP_041818918.1\|1071061_1072978_+\|stage-V-sporulation-protein-D	unknown	unknown	gnl\|CDD\|131269
NC_015634.1\|WP_013858974.1\|1076128_1077484_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235041
NC_015634.1\|WP_013858981.1\|1082425_1083559_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NC_015634.1\|WP_041818912.1\|1061673_1062219_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NC_015634.1\|WP_013858964.1\|1064979_1066599_+\|bacillithiol-biosynthesis-cysteine-adding-enzyme-BshC	unknown	unknown	gnl\|CDD\|378380
NC_015634.1\|WP_013858967.1\|1067313_1068243_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NC_015634.1\|WP_013858973.1\|1075152_1076127_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_015634.1\|WP_013858968.1\|1068264_1068624_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227176
NC_015634.1\|WP_013858969.1\|1068620_1070759_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NC_015634.1\|WP_013858976.1\|1078843_1079947_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NC_015634.1\|WP_013858977.1\|1079974_1080730_+\|FtsQ-type-POTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224505
NC_015634.1\|WP_013858966.1\|1066854_1067286_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|224912
NC_015634.1\|WP_013858975.1\|1077562_1078663_+\|stage-V-sporulation-protein-E	unknown	unknown	gnl\|CDD\|131664

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013858971.1\|1073252_1074710_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_015634.1\|WP_013858962.1\|1063217_1063718_-\|N-acetyltransferase	gnl\|CDD\|237470	PRK13688, PRK13688, N-acetyltransferase.	8.01843e-88
NC_015634.1\|WP_013858976.1\|1078843_1079947_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	9.64306e-169
NC_015634.1\|WP_049783532.1\|1063860_1064814_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	2.45729e-79
NC_015634.1\|WP_041818914.1\|1062620_1063133_+\|RsfA-family-transcriptional-regulator	gnl\|CDD\|274342	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	3.20487e-40
NC_015634.1\|WP_017553868.1\|1062272_1062446_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	3.92493e-27
NC_015634.1\|WP_041818918.1\|1071061_1072978_+\|stage-V-sporulation-protein-D	gnl\|CDD\|131269	TIGR02214, sporulation_specific_penicillin-binding_protein, stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	0
NC_015634.1\|WP_013858974.1\|1076128_1077484_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235041	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NC_015634.1\|WP_013858981.1\|1082425_1083559_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NC_015634.1\|WP_041818912.1\|1061673_1062219_+\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	5.31927e-32
NC_015634.1\|WP_013858964.1\|1064979_1066599_+\|bacillithiol-biosynthesis-cysteine-adding-enzyme-BshC	gnl\|CDD\|378380	pfam10079, BshC, Bacillithiol biosynthesis BshC. Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme.	0
NC_015634.1\|WP_013858967.1\|1067313_1068243_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	0
NC_015634.1\|WP_013858973.1\|1075152_1076127_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	2.42242e-153
NC_015634.1\|WP_013858968.1\|1068264_1068624_+\|cell-division-protein-FtsL	gnl\|CDD\|227176	COG4839, FtsL, Protein required for the initiation of cell division [Cell division and chromosome partitioning].	3.80474e-22
NC_015634.1\|WP_013858969.1\|1068620_1070759_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	7.32188e-160
NC_015634.1\|WP_041818920.1\|1081048_1082338_+\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	1.6682e-156
NC_015634.1\|WP_013858977.1\|1079974_1080730_+\|FtsQ-type-POTRA-domain-containing-protein	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	4.55177e-39
NC_015634.1\|WP_013858966.1\|1066854_1067286_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|224912	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown].	6.35232e-73
NC_015634.1\|WP_013858975.1\|1077562_1078663_+\|stage-V-sporulation-protein-E	gnl\|CDD\|131664	TIGR02615, Stage_V_sporulation_protein_E, stage V sporulation protein E. This model represents an exception within the members of the FtsW model TIGR02614. This exception occurs only in endospore-forming genera such as Bacillus, Geobacillus, and Oceanobacillus. Like FtsW, members are found in a peptidoglycan operon context, but in these genera they part of a larger set of paralogs (not just the pair FtsW and RodA) and are required specifically for sporulation, not for viability. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	0

>NC_015634.1|WP_013858969.1|1068620_1070759_+|penicillin-binding-protein
MKSRKLNTNRGAAILFIIFGLSFFIIAVRFLTIEITGQADGKVLAAKAAKKYLRTSTIPASRGNIYDASGEVIAENVVSYNLVAILDPKATIDPEHPKHVVNPRKTAQALAKYIDMPESKIYSLLTQKGRFQVEFGKAGQDIPYQTKNEIQKLNLPGIQFEAVPKRTYPNGSFASHLVGYAQKNETGGQMAGVMGIEKSMDAALEGKDGKISYEGDFWGYILPNAHKKVTKPKNGENVYLTIDKKIQSFVEDALGKVQKQYNPKKAFVVVADPKTGRILAMGQRPTFDPETRKGLSVWQNEAVETAYEPGSTMKIFTLAAAVQEGAFHPYATYKSGEFHVKNVPNPIKDHNGGVGWGRITFLEGLQRSSNVAFATLLDYIKQDKLKQYLEAFGFGKKTKVGLPNEASGKILYDYPVERYTTTFGQGTTVTAMQMIQAATAVANDGKMMKPYVVDKVVNPTTGKTEKTKPTVAGNPISADTAKKVRDYLRTVVTNKKTGTGTAYNIPGYEVTGKTGTAQIPNPNGGGYLTGTDNYIFSFLGMAPKDNPKLIVYAVVQQPHLKAGELGGEPVKALFNPIMRNSLQYLNIKPAKGKAVRLAKLPDFTGDSRTEASSAVRALGLTPVVLGDGDTVTAQEPEAQVKLLPGAKVFLKTNGNRVMPDIRGFSKRDVAGAAKLLGLRLAISGEGYAVSQSIPAKSKVKSGQALTVKFKNP
>NC_015634.1|WP_013858968.1|1068264_1068624_+|cell-division-protein-FtsL
MSNLARQPKRAPEQQQQVEKRVAPVTRRAQITLGEKIIASLFALFVLIMAVKIVSTEAAIYNANRSIEDTKTAIQNKNKVTDDLKMQVSELSRYDRIYEKAKKLGLKLDENNVKVVENK
>NC_015634.1|WP_013858967.1|1067313_1068243_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MFAHKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLKQLTGGHLYAFDQDETAIQHAKEKFAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDAPLDMRMDLDAPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGELADLIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVITFHSLEDRICKNILKEYSSAGDLPHGLPVIPKEYEPVLKLITKKPIIPDDEEVGGNNRSRSAKLRIAEKR
>NC_015634.1|WP_013858966.1|1066854_1067286_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MFMGEYRHNIDVKGRLIVPAKFREQLGDTFVITRGLDRCIFGYPADEWKQVEEKLKSLPLTKKDARAFTRFFFSGATECEWDKQGRILIPAPLLSYAKLEKECVVLGVSNRIEIWSKDLWEEYFQESEASFADIAENLIDFDL
>NC_015634.1|WP_013858964.1|1064979_1066599_+|bacillithiol-biosynthesis-cysteine-adding-enzyme-BshC
MELENFSIPATNRFASLYLAQKSPVKDFFHYDITDASVFHKRVEDLKKRAFNREGLADCIGHYMEKFGISPETARSLEKLRQPDAAVVIGGQQAGLLTGPLYTIHKLISIIRLASEQEEALQIPVVPVFWIAGEDHDYLEVNHIYAEQERRLKKFSYAEGPLEKKMISDTKPDPAHLKKWIHKVFEAFGETEHTNALLSRLEAFADRAQSLSDLFACMIHDLFKAYGVLLIDSADAHLRKIEAPFFERMIRDYGTITEAVLWQQQEIARFEFPKAIDISSRALNLFYYDGKERILLAYSPEHGGFTGKGGSPFFTEEALRALCAKSPERLSNNVVTRPLMQEWLFPTLAFIGGPGEIAYWAELKRVFEELGILMPPLVPRLNITLLERAVQRDIEELELDIGHVLKYGTRKEREKYWNAAKDENMDALIAETEKMLKMQYDKIFAAIGKGLQPLARKNLDFHLGQLAFLQRKVDEEIAGKHDAVLEKYARVERALRPDGNPQERVWNLFYFLNKYGTDFIHTLAALPFAFDGTHKLVKI
>NC_015634.1|WP_049783532.1|1063860_1064814_+|2-dehydropantoate-2-reductase
MSGIFFSIPLLPVKMEQRKWKGAGKMKIGIIGAGAIGLLYGGWLGKLHEVTLFPRTKAQAGQLNEKGITVKDSASSFRTIVKADGTFSSLSSQDLVIVAVKQYDLPAVTTVLKNEDGGVPALFLQNGMGHLALLEKLPQKTILVGTVEHGASRLDGTTVKHNGHGKTNIAVYRGKWDESVHLHTDAFPFTMQPDYELMLLRKCFANAVINPLTAVLKAKNGELVSNPHYARVFRAVFEELAALFPKLSREKMWEEATGICKNTCENESSMLKDVKKGARTEIDAILGYMLETAARQNSRVPLASALYEMVKGMEEKG
>NC_015634.1|WP_013858962.1|1063217_1063718_-|N-acetyltransferase
MAYQVERLKVNYKTLEEFKQFKEYGQQELSMLEDLQDNIIEDNADSPFYGIYFADKLVARMSLYERDAKYDLYFDPPQTFLELWKLEVLPNYQYKNYGRALVDFAKSFGLPIKTNARLKSRGFWEKMGFKPVPYNVERDLSENPFVWLPHGVKLKDAKQDKKTTSS
>NC_015634.1|WP_041818914.1|1062620_1063133_+|RsfA-family-transcriptional-regulator
MPAVRQDAWTQEEDLLLSDIVLRHIREGSTQLRAFEESGKRMNRTAAACGFRWNSYVRKQYASEIEAAKKERKERKQLVRDSGRAPAEEGPQAEATLFDAIRILQQLAEKSRHENGQLSASRRGTEEWKSKYEALLQKYLEEKEKHEELQKEYSALLSIMEKARQLSEQD
>NC_015634.1|WP_017553868.1|1062272_1062446_+|50S-ribosomal-protein-L32
MAVPFRRTSKTAKRKRRTHFKLQVPGMVECPRCGEMKMAHRVCPSCGFYKDKVVVNK
>NC_015634.1|WP_041818912.1|1061673_1062219_+|DUF177-domain-containing-protein
MKVKWSAIQLQKFRDKRFEIDGSVDITKDLMETDSEIRGASPFHVTGTGSVVRGRVTFDLHVEGTLVLPCARTLVDVHYPVDLKSTETFLLEPSDYEGAEDEEVHVAENEVIDLIPVMKELILLDIPMQVFSEEAKKGELPHTDNWQVLTEDEYLEMEQKAEKAVDPRMAGLAKFFDQDSE
>NC_015634.1|WP_041818918.1|1071061_1072978_+|stage-V-sporulation-protein-D
MKRVSNVTVRKRLVFILLCGIVIFSIIDVRLGYVQFGLGDMLTNRAKALWSRSIPFEGERGKIEDRNGVPIASNQSAPTIFIIPRQVKDPAKTAEKLGNALDADKEKIYKEITQVRSIVRIKEGRKISNEKANDVRRLGLSGVYIAEDSKRYYPFGRYLSHVLGFTGADNQGLTGLELYYDDALSGKKGAVEFYTDAKGKKKMKDMADEYEAPKNGLDLKLTVDTKVQTVIERELDNAEKKYHPDGLIAIAMDPDTGEILGMSSRPSYTPDNYKNVPQEVYNRNLPIWSTYEPGSTFKIITLAAALEEKKVNLTKDKFYDSGAVEVGGSTLHCWKRGGHGSETFLEVVQNSCNPGFVELGERLGKNTLFKYIRNFGFGTKTGVDLSGEASGILFNLDRVGPVELATTAFGQGVSVTPIQQVAAVSAAVNGGILYKPYIAKELVDPETGETVMRKNPVAKRRVISENTSKQIRHALETVVTQGSGKNAYVDGYPVGGKTGTAQKAKNGRYLENNYVLSFIGFAPANDPKIVVYLAVDNPKNTIQFGGQVAAPIAGTIIGDSLRAMGVKPVKNQAEKEKSYFETPTVKVPNLIGETKKEMMNDQYNLKLDVSGSGNKVIRQSPEPGVKVEEGSTIRVYMQ
>NC_015634.1|WP_013858971.1|1073252_1074710_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MKLHTLLEALSFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPVDVDVPVIIVRNTKRAMALLADRFYGQPSRKLRLVGITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKIFHEMNARGVTDCVMEVSSHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAASKEFEQVTAVPVITYGIDRDADFMAENIDMHARGTTFTLVTPFEKREVRLQLVGKFSVYNMLAAIATGVVSGVPLDSIIKTAEAMEGVRGRFELVNGGQDFSVIVDYAHTPDSLENVLKTVRQFAKKKIFVVVGCGGDRDKTKRPVMAQIACKYADYPIFTSDNPRSEDPLAILREMEKGVEGERYACIPDRREAIKTAIFRAKAGDVVLIAGKGHETYQIIGNEVHHFDDREVALEMIKER
>NC_015634.1|WP_013858972.1|1074715_1075156_+|hypothetical-protein
MLSFGDTARLFSLGRGMEMALEFATVSVFADVNQPKGLYVPFSELDINRAIAHGAIAALWKKDAPVPRYIPNDFPLFMAEDVSFAFTQLVQFYLKKMESKDLDMKTTFIFYGSELRDKNPHTYDLADAENRKRLLCACRRHGREKA
>NC_015634.1|WP_013858973.1|1075152_1076127_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MIEQVIFFTTLMAFLISVLLSPVFIPFLRRLKFGQSIREEGPKSHQKKSGTPTMGGLIILVSIIASTLVMAGKFAEPTVRIYLLLLVTIGFGLLGFLDDFIKVVMKRNLGLTSKQKLLGQILVAVIFYVVFRHFHLSSEVSIPFTDKSVDFGWFYFVIILLWLVGFSNAVNLTDGLDGLVSGTAAIAFGAFAVLAWNQSQADVALFSVAVVGAVLGFLVFNAHPAKVFMGDTGSLALGGAIAAISILTNLEILLIVIGGVFVIETLSVILQVISFKTTGKRIFRMSPLHHHYELAGWSEWRVVVTFWAVGLLCAILGIYIEVWM
>NC_015634.1|WP_013858974.1|1076128_1077484_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKNITEYEHKKVLVLGLAKSGVSAASLLHRLGAFVTVNDYKPLEENPEAQGLLEQGIKVICGSHPIELLDEGFELIVKNPGIPYSNPLVAGALEKGIPVITEIELAYKIAECPMVGITGTNGKTTTTTLIYEIFQADPHFDPLIAGNIGKVASTVAQKASAGQQMVVELSSFQLMGVQTFRPHIAIITNIYEAHLDYHGTKEAYAKAKSNITRNQTEDDFLILNHAQPELWDLVSFTKAKIIPFSTKEYVEDGASVKDGSITWKGEKIMDRAEIVLPGDHNLENILAAVAAAKLMGASNDAIRGVLATFKGVKHRTQYIGEIKGRKFYNDSKATNILACKAALAAFHQPVILLAGGLDRGNGFDELIPALKYVKALITFGETAPKLESTAKKAGIPVIRTVENVEEAVPVAWALSEPGDCILLSPACASWDQYKSFEIRGDIFIDAVHKLR
>NC_015634.1|WP_013858975.1|1077562_1078663_+|stage-V-sporulation-protein-E
MPSKKTNPDFLLIIVTLALLATGLLMVFSASEIVAEYKFNDAFYFLKRQLLFAGLGVAAMFFVMRIDYWTWRAWAKTILVICFVLLVLVLIPGIGLERNGSRSWIGVGAFSIQPSEFIKMALIAYLAKFLSENQKYITTFKKGMLPALALVFVAFGMIMLQPDLGTGTVMLGTCIIMIFVSGARIAHFAMLGLLGVGGFVALVLSAPYRIARITSFLDPWSDPQGKGFQIIQSLLAIGPGGLFGMGLGESKQKFHYLPEPQNDFIFAILSEELGFIGGTFVLILFALLLWRGIRIALGAPDLYGSLLAVGIISMIAIQVMINISVVIGLIPVTGITLPFISYGGSSLTLMLVAVGVLLNISRHSRL
>NC_015634.1|WP_013858976.1|1078843_1079947_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MKIIVSGGGTGGHIYPALALIRTIKQKHPDTECLYIGTEKGLESRLVPRESIPFKSIHITGFKRSLSFENVKTVARFLKGVSRCKKIIREFKPDVVIGTGGYVCGPVVYAAAKLHIPTIIHEQNSVPGLTNKFLSRYVDKVAICFESAKSFFDEKKVVLTGNPRASEVIGEKRRDVLSGFGLKTTLPTVLIFGGSRGARPINEAVVKSFSNFAQKNYQVIYATGDVHYEAVKKEIALIGEKGNIKVVPFIHNMPEVLRAVDLVVSRAGATTLAELTALGLPSILIPSPYVTNNHQEKNAKTLLENGAAFMLLEKDLSSAKLVSLIDKILLDREQMEKMQAAARKLGIRDASWRLYEVMENLAAKAKS
>NC_015634.1|WP_013858977.1|1079974_1080730_+|FtsQ-type-POTRA-domain-containing-protein
MARSDKNIVSLEDRIPKLKQQRRRKTNRRLIMLLTVFFMLVMLIIYLESPLSRVHRIQIEGNEAVSKPYILKKSGIATGENIWNIRKDAVRKRIASIPEVDSVKVGISLPNTLYIKVKEHQKIGYLQQKNGFLPVLDNGSVVKRTVKEIPAASLIFTGFKQDTHLHEMIRQMQKLPDSITNAISEVRYTPSNVDRDLVTLYMNNGFEVRASIPSFAEKMAHYPSIISQLDPKKKGVIDLEVGSYFKAYDSK
>NC_015634.1|WP_041818920.1|1081048_1082338_+|cell-division-protein-FtsA
MNSSEIYVSLDIGTSATKVIIAEMGNDSLNIIGVGNVRSEGIKKGSIVDIDETVLSIRRAIEQAERMVGMKIDHVIVGIASNHVMLQPCHGVVAVQSENREITDGDVQRVMDAAQVLSIPPEREIVNVIPKQFIVDGLDEIHDPRGMIGVRLEMEGIIVTTSKTILHNTLRCVEKAGLTIAEIVLMPLAAGTIALSKDEMELGTALVDIGGGSTTLAVFENGHIRTTSVLPVGGDHITKDLSICLRASTEDAEKIKLKHGHAFSEDALEDDVFDVQIIGSEQKEQFNQLQISDIIEARLEEIFLLIQQELRKIGVHDLPGGIVLTGGTANMPGVPELAETVFQSRVRVAIPDYIGVREPQYTSAVGLIQYAAKNARLEGKNVSSRLVAAGMEHAEPKPAKKPQSKPKQASGQEEKISSKMKKFFGLFFE
>NC_015634.1|WP_013858981.1|1082425_1083559_+|cell-division-protein-FtsZ
MLEFDTNVDALATIKVIGVGGGGNNAVNRMIEHNLQGVEFIAVNTDAQALNLSKAEIKMQIGAKLTRGLGAGANPEVGRKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAHIAKELGALTVGVVTRPFTFEGRKRANQAAGGISAMKEAVDTLIVIPNDRLLEIVDKSTPMLEAFREADNVLRQGVQGISDLIAVPGLINLDFADVKTIMTNKGSALMGIGIASGENRATEAAKKAISSPLLETSIDGAQGVLMNITGSANLSLYEVQEAADIVASASDQEVNMIFGSVINESLKDEIVVTVIATGFNEEAQAQGKQRPPLGQSRPALNQQTKRETKREEPQSEPQRTVQYSEDTLDIPTFLRNRNRRK

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Crispr_ID: NC_015634_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_2

1750631-1750719

Unclear

Consensus_repeat	Method
CCCGCGTGCAGACGGTTTTTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_015634_2

>merge|NC_015634|2|1750631-1750719|CRISPRCasFinder
CCCGCGTGCAGACGGTTTTTTCTGTGGCCAGCTACAATTCGGCCTCCGGCACGCCAAAAGTTTGCGCCCGCGTGCAGACGGTTTTTTCT

>NC_015634|2|2|1750631-1750719|CRISPRCasFinder
CCCGCGTGCAGACGGTTTTTTCT	GTGGCCAGCTACAATTCGGCCTCCGGCACGCCAAAAGTTTGCG
CCCGCGTGCAGACGGTTTTTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013859674.1\|1753266_1753965_-\|tRNA-(adenine-N(1))-methyltransferase	unknown	unknown	gnl\|CDD\|225258
NC_015634.1\|WP_013859673.1\|1752151_1753270_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NC_015634.1\|WP_013859668.1\|1747541_1748441_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NC_015634.1\|WP_013859664.1\|1744634_1745393_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_015634.1\|WP_187287483.1\|1759630_1760263_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
NC_015634.1\|WP_041819149.1\|1749978_1750611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316682
NC_015634.1\|WP_013859682.1\|1760513_1761281_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NC_015634.1\|WP_013859675.1\|1754055_1754427_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187
NC_015634.1\|WP_013859672.1\|1750903_1751869_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NC_015634.1\|WP_013859676.1\|1754646_1755183_-\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_041819155.1\|1758812_1759613_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NC_015634.1\|WP_041819147.1\|1745884_1747258_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_015634.1\|WP_013859677.1\|1755331_1756465_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NC_015634.1\|WP_041819153.1\|1756542_1758348_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_015634.1\|WP_013859661.1\|1742587_1743181_+\|nucleotidase	unknown	unknown	gnl\|CDD\|227950
NC_015634.1\|WP_013859662.1\|1743328_1743760_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_015634.1\|WP_187287482.1\|1741335_1742451_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NC_015634.1\|WP_013859663.1\|1743762_1744620_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_015634.1\|WP_013859666.1\|1745588_1745843_+\|DUF2624-domain-containing-protein	unknown	unknown	gnl\|CDD\|371384
NC_015634.1\|WP_013859669.1\|1748456_1749767_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013859674.1\|1753266_1753965_-\|tRNA-(adenine-N(1))-methyltransferase	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	2.6636e-77
NC_015634.1\|WP_013859673.1\|1752151_1753270_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	4.49946e-50
NC_015634.1\|WP_013859668.1\|1747541_1748441_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	3.67886e-161
NC_015634.1\|WP_013859664.1\|1744634_1745393_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	7.06756e-103
NC_015634.1\|WP_187287483.1\|1759630_1760263_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.63681e-66
NC_015634.1\|WP_041819149.1\|1749978_1750611_+\|hypothetical-protein	gnl\|CDD\|316682	pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY.	1.83166e-26
NC_015634.1\|WP_013859682.1\|1760513_1761281_-\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.38875e-81
NC_015634.1\|WP_013859675.1\|1754055_1754427_-\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	4.76104e-10
NC_015634.1\|WP_013859672.1\|1750903_1751869_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	1.02094e-141
NC_015634.1\|WP_041819155.1\|1758812_1759613_-\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	2.45335e-146
NC_015634.1\|WP_041819147.1\|1745884_1747258_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.77243e-35
NC_015634.1\|WP_013859677.1\|1755331_1756465_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NC_015634.1\|WP_041819153.1\|1756542_1758348_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_015634.1\|WP_013859661.1\|1742587_1743181_+\|nucleotidase	gnl\|CDD\|227950	COG5663, COG5663, Uncharacterized conserved protein [Function unknown].	4.66306e-62
NC_015634.1\|WP_013859662.1\|1743328_1743760_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	7.06887e-49
NC_015634.1\|WP_187287482.1\|1741335_1742451_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	0
NC_015634.1\|WP_013859663.1\|1743762_1744620_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.03438e-65
NC_015634.1\|WP_013859666.1\|1745588_1745843_+\|DUF2624-domain-containing-protein	gnl\|CDD\|371384	pfam11116, DUF2624, Protein of unknown function (DUF2624). This family is conserved in the Bacillaceae family. Several members are named as YqfT. The function is not known.	7.89048e-29
NC_015634.1\|WP_013859669.1\|1748456_1749767_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.05701e-130

>NC_015634.1|WP_041819149.1|1749978_1750611_+|hypothetical-protein
MPPRNMPPVFGRQNPPPFGGMQRSLFAGNRLGGPGMPGQFRAGGQMPGFPGRVGATAGRGGGFLSRLFQRGGQTAAANPASAFQRGAAGGGGSLFKSITNPSSISSFLNNTQNVLKTAQQVGPMIQQIQQVGPLVKNLPAMWKLYRGLKNAPEEEGQENRELSSKEKKPEPAKEKKSNRQAGRNASSQPAESTNGEKRPEKGASVPKLFI
>NC_015634.1|WP_013859669.1|1748456_1749767_-|DEAD/DEAH-box-helicase
MNGTKWKDFGFKPFIEKAIEHKGFAEPTEIQRKMIPLVLRGESAIGQSQTGTGKTHAYVLPLLQKTDPSLAEVQAVITAPTRELAAQIYHEIQEVLKWEETGRITAKLFIGGTDKQRDISKLKKQPQIVVGTPGRVNDLVKEQALFVHTAKTFVVDEADIMLDMGFIVDVDQIAGRMPEKLQMLVFSATIPEKLKPFLKKYMENPKFEQVAPRQIAAEKIEHILIPKRAREKIDVLHDALEAFNPYLAIVFANTKAMVEEIAAGLSAKGMKTARIHGDLSPRERAKTMKQIKNLEYRYIIATDLAARGIDIEGVSHVVNYELPKDLTFYVHRAGRTARADLSGICATIYEPSDEFALTQLEKMGIAFIYRDVRRGEWVELGDRNRRKKRVKKADKTETAARKAIGRPKKVKPGYKKKMERQIEMLKKRQRKLQKRK
>NC_015634.1|WP_013859668.1|1747541_1748441_-|deoxyribonuclease-IV
MLKIGSHVSMSGKKMLLASSEEAVSYGANTFMIYTGAPQNTRRKKIEDLNIEAGLAHMKEHGIEEIVVHAPYIINIGNTTNPATFELGVRFLQSEIERTEAIGAKQIVLHPGAHVGAGPEKAIKKIIEGLNEVLVPGQTAQIALETMAGKGSECGRTFEELAEIIDGVKYNDKLSICFDTCHTHDAGYDVKNRFDEVLDEFDRIIGIGRLKVLHVNDSKNEAGSHKDRHENIGFGHIGFEALDYIVHHPALSDIPKILETPYVGEDKKNRKPPYKYEIAMLRNREFDENLLAKIVEQPV
>NC_015634.1|WP_041819147.1|1745884_1747258_-|C40-family-peptidase
MNRKFLSLTAAAFIAGSAFVPLSKASAETAAKSIQNEESAVQESISGKQNEIAKIAENEKQLQSDMDKISAKIRQTNQKISEKTQEVSNAQDEVASLNAKMKETQKRIEERNNVLARRARDIQQNGGLDSYLNVLLESGSLSDFVSRAAALTTFVQADRAILKAQEKDSQTLNAAKAEVEKKLQKVQSDLSELQELKEENKYRFADQKSLKAALKEQKQAAAAELARLKDKEASLNAEEKAALAELESKQAAAAPSDATKPSAPQDRAQEDSASSGTGAGRGPDGSNGKTAAHTQKEKAKPGSRAKHVARVSSFSDSGRSSNNASGTVEKAISAGSALIGHTSYKMGGGRTKSDIANGIFDCSSFVHWAYAQAGVDLGGSGANTDTLAGLGQAVSASQMKRGDLVFFDTYKYNGHVGIYLGGGKFLDCNSSDGVSIDNMSSGYWKKCFNGVVRRVVK
>NC_015634.1|WP_013859666.1|1745588_1745843_+|DUF2624-domain-containing-protein
MKLIQNMVNYKVNIITGAELFKYARQFNVKISREDAEKIADYVRGKQLDIFDDQARSKALKDIAKITSPLTAKEINRVFVLLAK
>NC_015634.1|WP_013859664.1|1744634_1745393_-|ABC-transporter-ATP-binding-protein
MEEYIVEVSGLSFRYDRKNVLEQIDLNIPKGAFLGIIGPNGSGKSTLLKLMLGLLKPQEGEIRLFGTPLSRFKDWSRIGFVSQKANAFNTGYPATVLEVVESGLVKKTGLFRFLGPGARKEAMEAIRSVGMEAYAHQNIGELSGGQQQRVFIARAIVSKPEILMLDEPTVGVDQHHVRSFYEMLERLNREWGITLILVTHDIGAVSDEVTHVACLNQHLYFHGDIHAFQQLDEEKRSFWYARDARLLAHEHG
>NC_015634.1|WP_013859663.1|1743762_1744620_-|metal-ABC-transporter-permease
MIAALFHYHFLQNTFLAGILIGLIAPLIGSFIVVRRLSLIADALSHVTLSGIAVSLFLSSKLPILAGLNPLYIGTGFSVLGSVLIERLRGVYRHYEELAIPIIMSGGIGIGLIFISVAGGYNVDLMNYLFGSVSAVSRADLWLILGIAVIVAAVILLLYKELFLLSFDEEYAKVSGIPAKTIHLLFMVLIALVISAAMRIVGIMLVSALITLPVAASIRISRGFKQTILFSVLFGEISVLGGLVTAFYLNLPPGGTIVMISIAILLLAVYMKRFRPGAGLNKKKV
>NC_015634.1|WP_013859662.1|1743328_1743760_-|transcriptional-repressor
MLLDEAIEILKENGYKHTGKREKMLDLFSESNKYLTAKDVLEWMKDDYPGLSFDTIYRNLSLFAELGILEVTELSGEKHFRFKCSTNHHHHHFICLACGKTKEIPDCPMPTVSGLEGYAISGHKFEIYGTCPECMADETRQNI
>NC_015634.1|WP_013859661.1|1742587_1743181_+|nucleotidase
MVKKYRFGIDIDGTVTDPETLIPFINDAFHIGLKYEDLTKYEITDVVDIPAGTFADWFIRSEPVIYAKSPVAKGAKEVLNKWADRFELYFISARASHLLDVTKNWFTKQQLKYHHIELIGTHHKVETAKKYSVDLFLEDKHDNAAAIAQTLGIPVLLFDTPYNRDPVPENVYRVKNWKEADDWVRRWITQSGRAAHD
>NC_015634.1|WP_187287482.1|1741335_1742451_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MSLGEIIHRTKTRPVKVGNLTIGGSNELFIQSMTTTKTHDADATVRQIERLEEAGCQIVRVAVPDERAARAIPDIKKRIHIPLVADIHFDYRLALIAMEGGVDKIRINPGNIGKREKVEAVVKAAKERGIPIRIGVNAGSLEKPILQKYGYPTADGMVESALHHIRILEDLDFHDIIVSMKASDVRLAIEAYEKAARTFDYPLHLGITESGTLFSGTIKSAAGIGALLNMGIGNTLRISLSADPVEEVKVARELLKIFGLSSNAPTLVSCPTCGRIAIDLISIANEVEEYLQTIKAPIKVSVLGCAVNGPGEAREADIGIAGARGEGLLFRKGKIIRKVPEDQMVEELKKEIDMLAEAYYQKQAAQNANPV
>NC_015634.1|WP_013859672.1|1750903_1751869_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MEVLKISPRGYCYGVVDAMVIARNAAMDKTLPRPIYILGMIVHNQHVTDAFKEDGILTLDGKNRKEILEKVETGTVIFTAHGVSPEVRELARKKGLTAIDATCPDVAKTHDLIREKEKEGYDVIYIGKKGHPEPEGAAGVAPAIVHLVETEADVEALDIRNDKIIVTNQTTMSQWDVADLMEHIQKKYPHAETYNEICHATQIRQEAVARQAGEADLLLVVGDPRSNNSNRLAQVSEEIAGTKAYRIADVEEIELAWLEGVQKVAVTAGASTPTPIVREVIAFLEKFDPEDESTWERKRNVPLNKILPKVKAPHPSSGQKA
>NC_015634.1|WP_013859673.1|1752151_1753270_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MKHANGHDVIQLFEQFAPKKFAMDGDPVGLQIGRLNGPVKNVLVALDVLEDVVDEAIEKDAQLIIAHHPSVYRPLKNMATDTPQGRLIEKCIRHGIAVYAAHTNLDIAEGGVNDLLAEALGLRDTEVLSPLFEDKLRKLVVFVPVSHEEAVRTALGNAGAGAIGNYSHCSFSARGTGRFLPGEGTNPFLGEAGKLEAADETRVETIYPASIEKQVLASMLEAHPYEEVAYDIYPVVNEGRKFGLGRIGEIEREMALRDFAKHVKKALEVPALRVVGNLDEKVKKVAVLGGDGNKYFAEAKKAGADVFVTGDFYYHNAHDALALGLNVVDPGHNVEKVMKKGVAAYMRKACREHQLDVRFIASEVNTDPFQFL
>NC_015634.1|WP_013859674.1|1753266_1753965_-|tRNA-(adenine-N(1))-methyltransferase
MNSGKLSKRLESVAAFIPAGTVLADIGSDHAYLPVFCVKCGSVAEAVAGEVAEGPYHSAQKQVEKAGLAGKISVRKGDGLEILAPGEAGCITIAGMGGALIASILDRGKAKLNGKETLILQPNTGSHIVRGWLAENGWAITGEDILEEDGKIYEIIAAEYAGALVALTEAERLVGPVLIKNQNEAFRKKWRNEIKKWQSVLSHLEQAGASPEIEEKKGVYRHLIALVEEVLT
>NC_015634.1|WP_013859675.1|1754055_1754427_-|cytochrome-c
MKRNPVIPYVLIMAFGLALIFFLSVKGIGDAKEVAKEKEHPKQTETASSEKFDPESFAKKTCVTCHGNNLQGGAGPNLHGIGKKLPKDKIKDVLRNGTSGGMPAGLVEEDHIDEMADWVSKLK
>NC_015634.1|WP_013859676.1|1754646_1755183_-|hypothetical-protein
MDDKRKQIIVNEIKMWKETKMIPQEYCDFLLAIYTEGTEGNTRKQNGAGKSVKKQAAVSAFILALVAIAVFVIYFTELHFILQTGILTAFVGCLLFLGIHYANKEIFYSIFFVGAALILLLFSVFLNEKLFGNHRYTLYLLFFANCGLWLAAGKAYKLLYFTLSGLLGLAILLVSIVI
>NC_015634.1|WP_013859677.1|1755331_1756465_-|RNA-polymerase-sigma-factor-RpoD
MAEKSARSKEVEESEFTVEKAKEQLVERGKKRGVLTYDAISEKLGHFDLTSDQMDEFYESLGEQGIDVTDEASDEDAPSHLELEKENDEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSADEEIELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
>NC_015634.1|WP_041819153.1|1756542_1758348_-|DNA-primase
MTGMIPNEKIDEIRRSSDIVEVVSDYVQLKKQGRNYFGLCPFHGEHTPSFSVSPDKQIFHCFGCGAGGNVFTFLMDIEGISFQEAAEKLAQKAHIELGVVLRREEQKNIDPKRRQMLEAHELLQKLYHHLLLHTKEGEPALKYLRGRGFTNEAIEKFGIGYALPAWDFAANMLQKRGFPLSVLEESGLVIRNEKDGKYFDRFRDRIMFPIMDEKGNMVAFAGRAVRKEEHPKYLNSPETPLFNKSKLLFNLNRARGPIRKKQQAVIFEGYADVISADRAGVENGIATMGTSITAEHVRMIKRLTDGVVICYDSDQAGLTAAFRAGKMLSENGCEVRVAKMPDGLDPDDYINQHGGEKFRRDVIGASLTFMAFKMQYFRMNKNLQNEGEKLAYIEEVIQEIAKLENPVEKDLYLRQLSEEFSLSLDALKEQERQYGSRETGNRKRSRPAGNPAPAHEEARMLPANMTAERRLLWHMLRDGEIAYKVKDFLGENSFYGDEHQAIFTYLLGWYEEGNPPDTSAFLSYLPDAKLQRIAAEIEMMTVGGELTDEELEDYVQYVLKHQKLLRIQEKLRAQKDAERQNDFQKALQLAGEILALRKSMT
>NC_015634.1|WP_041819155.1|1758812_1759613_-|kinase/pyrophosphorylase
MAKPHIYIVSDSVGETAELVTKAAISQFENQDAELKRFPYVEDTIHIDEVVSLASMNYGMIVYTLVKPEMRKYMNDQAVKHGLAAVDLMGPLMDRLLELYESKPLYEPGLVRKLDEAYFKKVEAIEFAVKYDDGRDPRGIVRADIVLIGVSRTSKTPLSQYLAHHRYKVANVPIVPEVDPPEELFRIPSKKCIGLKIDPDTLNHIRKERLKTLGLDGSASYATIERIKYELDYFNQIVERLGCKVIDVTNKAVEETANIIMDEMRK
>NC_015634.1|WP_187287483.1|1759630_1760263_-|helix-turn-helix-transcriptional-regulator
MITIELTKRQEQILEIVKTNGPITGEHIAEKLNLTRATLRPDLAILTMAGYLDARPRVGYFYTGKTSTQLLTENLKHIYVKDYQSLPVVVNENMSVYDAIVTVFLEDVGTLYVVDNASHLTGVLSRKDLLRASLGNKDLSALPVHIIMTRMPNITCCKKDDLLIDVAKKLIEKQIDSVPVVKETETGLEVTGRITKTNITKAFVELADGD
>NC_015634.1|WP_013859682.1|1760513_1761281_-|DNA-repair-protein-RecO
MFEKCEGIVIKNTDYGESNKILHIYTREFGKLGFMARGAKKPNSRLAAVSQVFTYGNFLFQPSRGLATLQQGEAVSPMRHIREDIFKTAYAAYVVELLGRAVEDRKKNPFLFELLLRTLEYIDEGYDPEIIRDIFEMKMLNVLGMYPVMDRCAVCGNTEGPFAFSIRENGLLCHRCFARDPYRLPLPQPVIRLLRLFYFLDINRLGSISVKDSTKKELRTAISMYYDEYTGLQLKAGRFLSQIEALEKKLGPDNA

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Click the colored protein region to show detailed information

Crispr_ID: NC_015634_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_3

2072285-2072442

Orphan

Consensus_repeat	Method
TTTAGGGCTGGCTTTTCATGCCGGCTCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015634_3

>merge|NC_015634|3|2072285-2072442|CRISPRCasFinder
TTTAGGGCTGGCTTTTCATGCCGGCTCTATGCGCACGGGTTTCTTAATTTAAACCCGGCTCTGTTCCGGATATCCCGGTTTAGGGCTGGTTTTTCATGCCGGCTCTGTACCGGACAGTAAGCAGAATCGGTTTAAGGGCGGGGGTTCATGCCGCCCTT

>NC_015634|3|3|2072285-2072442|CRISPRCasFinder
TTTAGGGCTGGCTTTTCATGCCGGCTCT	ATGCGCACGGGTTTCTTAATTTAAACCCGGCTCTGTTCCGGATATCCCGG
TTTAGGGCTGGTTTTTCATGCCGGCTCT	GTACCGGACAGTAAGCAGAATCGG
TTTAAGGGCGGGGGTTCATGCCGCCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013859994.1\|2073727_2074390_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_015634.1\|WP_013859996.1\|2074990_2075782_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|223584
NC_015634.1\|WP_013860002.1\|2078106_2078976_-\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|130191
NC_015634.1\|WP_013860003.1\|2079072_2080491_-\|dipeptidase-PepV	unknown	unknown	gnl\|CDD\|235988
NC_015634.1\|WP_013859993.1\|2072572_2073427_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814
NC_015634.1\|WP_013859983.1\|2063661_2066784_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NC_015634.1\|WP_013859987.1\|2069206_2069521_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NC_015634.1\|WP_013859979.1\|2060934_2061312_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NC_015634.1\|WP_013859982.1\|2062057_2063371_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_015634.1\|WP_013859992.1\|2071901_2072213_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|227871
NC_015634.1\|WP_082178612.1\|2074472_2074823_+\|YtzH-like-family-protein	unknown	unknown	gnl\|CDD\|316669
NC_015634.1\|WP_013859980.1\|2061330_2061855_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NC_015634.1\|WP_019720672.1\|2077890_2078058_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_017552518.1\|2081223_2081445_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_015634.1\|WP_013859984.1\|2066957_2067593_+\|YhcN/YlaJ-family-sporulation-lipoprotein	unknown	unknown	gnl\|CDD\|131944
NC_015634.1\|WP_013860000.1\|2077171_2077741_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NC_015634.1\|WP_013859985.1\|2067644_2068250_-\|DUF4479-domain-containing-tRNA-binding-protein	unknown	unknown	gnl\|CDD\|234804
NC_015634.1\|WP_013859986.1\|2068263_2069058_-\|DUF1444-domain-containing-protein	unknown	unknown	gnl\|CDD\|377802
NC_015634.1\|WP_013859989.1\|2069663_2070614_+\|fused-response-regulator/phosphatase	unknown	unknown	gnl\|CDD\|381147
NC_015634.1\|WP_041819270.1\|2076208_2077159_-\|NERD-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013859994.1\|2073727_2074390_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.26084e-90
NC_015634.1\|WP_013859996.1\|2074990_2075782_-\|phosphotransferase-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	1.20202e-66
NC_015634.1\|WP_013860002.1\|2078106_2078976_-\|D-amino-acid-transaminase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	2.34091e-143
NC_015634.1\|WP_013860003.1\|2079072_2080491_-\|dipeptidase-PepV	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NC_015634.1\|WP_013859993.1\|2072572_2073427_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.16041e-175
NC_015634.1\|WP_013859983.1\|2063661_2066784_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.35985e-165
NC_015634.1\|WP_013859987.1\|2069206_2069521_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.47737e-25
NC_015634.1\|WP_013859979.1\|2060934_2061312_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.29957e-16
NC_015634.1\|WP_013859982.1\|2062057_2063371_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_015634.1\|WP_013859992.1\|2071901_2072213_+\|PepSY-domain-containing-protein	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	7.72045e-31
NC_015634.1\|WP_082178612.1\|2074472_2074823_+\|YtzH-like-family-protein	gnl\|CDD\|316669	pfam14165, YtzH, YtzH-like protein. The YtzH-like protein family includes the B. subtilis YtzH protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved DIL sequence motif.	3.82947e-39
NC_015634.1\|WP_013859980.1\|2061330_2061855_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	1.30692e-38
NC_015634.1\|WP_017552518.1\|2081223_2081445_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	9.41367e-15
NC_015634.1\|WP_013859984.1\|2066957_2067593_+\|YhcN/YlaJ-family-sporulation-lipoprotein	gnl\|CDD\|131944	TIGR02898, Uncharacterized_lipoprotein_YlaJ, sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination].	1.49991e-27
NC_015634.1\|WP_013860000.1\|2077171_2077741_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	5.24205e-51
NC_015634.1\|WP_013859985.1\|2067644_2068250_-\|DUF4479-domain-containing-tRNA-binding-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	5.39023e-53
NC_015634.1\|WP_013859986.1\|2068263_2069058_-\|DUF1444-domain-containing-protein	gnl\|CDD\|377802	pfam07285, DUF1444, Protein of unknown function (DUF1444). This family contains several hypothetical bacterial proteins of unknown function that are approximately 250 residues long.	7.61241e-174
NC_015634.1\|WP_013859989.1\|2069663_2070614_+\|fused-response-regulator/phosphatase	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.65014e-35

>NC_015634.1|WP_013859992.1|2071901_2072213_+|PepSY-domain-containing-protein
MNWKTFIAGIAVGAAAGYAVNETLHHTVNVSAETVLAKVKKAFKENGPIDGSWIQMTAEDYEKYPFKTRVYKGGVSLTKDGEKKQYEFIADSKTGTVLDVYPI
>NC_015634.1|WP_013859989.1|2069663_2070614_+|fused-response-regulator/phosphatase
MTILIVDDHKVNLFVIEKILKNAGYDQYVSFTSAKELFAYLHLGEEHAPKPPADCILMDIMMPEIDGIEACRMLQQSPRFRDIPVIFLTALDDARKLAEALNAGGIDYITKPINKVELIARLKVALRLKEEKDWHTEQEKHLKDELDLAMQVQRTLLSEPIKENCLSITSSYKPAHQLAGDLYYWYKIDDHRYSLMLLDVMGHGISASLVCMFISSKLRDLMQSKADPETVMQELNELMRYLNKDGGMQHYFTAIYLVLDCAGKTVEYVNAGHPPAFALVDEKEVVPLSEGGCAVGFFPQLKVEKQVLRFRAASGA
>NC_015634.1|WP_013859987.1|2069206_2069521_-|thioredoxin-family-protein
MQELQSMEDFKNLKENGAHIFLFSADWCPDCRFLDPFMPEIEEAYSDYTFVHVDRDKFLDLCADLDVYGIPSFVAFRDGKEIGRFVSKDRKTKEEVEKFIESLA
>NC_015634.1|WP_013859986.1|2068263_2069058_-|DUF1444-domain-containing-protein
MDTKQLRRELEKRLEKKGRIFSYDREKDILRVENEDTHQGLNISLPEIAAKWVSQKEEAIEEVVYYAEEALGVMGKNHSLHGREKSIFPVIRSTSFPAEAPGGIPFLTDAHTAETRIYYALDLGNTYRLIDFQMLEREGWSPEHVRETARFNLRSLSTKMKKDTVAGNDFYFLNTNDGYDASRILNEKFLQEMSVKTEGEMVLAVPHQDVFIIGDIRNATGYDIIAQMAMNFFANGHVPITALSFLYQDGELEPVFILGKNRKS
>NC_015634.1|WP_013859985.1|2067644_2068250_-|DUF4479-domain-containing-tRNA-binding-protein
MNVFYNREGIGDTLIVMIKEAEHAAYEKRGTVARIYDEKTKETAGFNIFEASRYGGFEGSGPVKLTEALLDKLNGILAENGFNEKLDADLSPKFVVGYVKEKEKHPDSDHLSICQVDTGTETLQIVCGAPNVEAGQKVVVAKTGAVMPNGMIIKDAVLRGVASSGMICSARELGLPNAPQKKGILVLDGQYKVGSEFPLPK
>NC_015634.1|WP_013859984.1|2066957_2067593_+|YhcN/YlaJ-family-sporulation-lipoprotein
MKIAKALLGIGLASGLLMGCGNNNGAGDNNGNRNNARPVRYNDTADNNDVRYNNVRYNTGRTDGNNGADLTNNTRGTQGINNANLTNNNGNGNNNNNNNNVRVANRIARSIEDLKEVAQAHVIATNDNAYVAVLLERNQNNDKLDKKLKNKISKVVKQTDPSINDVYISENPDFFDQMSDYVNDIRNGRPISGFFNQFNDTIQRVFPNGSR
>NC_015634.1|WP_013859983.1|2063661_2066784_-|DNA-translocase-FtsK
MNLSWIKKMAKYFKDENVHEEARDPAGLYQARPENIDTRVAYHYPKKQFRFPVIPDQEGERRKTTEKPEKKQPRAKKHRPDPRPERGEKVQKGHPFRPTDIPSPVFGFKRPANDLPSQEETTVLEYELEDHYKKDIHLFDMAKLQQSLDFAENPGTDGEGNLTTPEHGMADQLFEEKKMDLPADQAGRATADQAEKGEPVQTETGRGEDSPGAADEATGTPESEAAYRLGRTGTIPSDESEQLTAEMPESGPASVLPKEDAAAVSPEASTADLANEPETPSSYASEKTDAIQVNEPEQQNAGTLGSDPASDPAKSEETPASALENMEPEQHSMGTPESLAAGMLEKSGISLADEPETEKAISASEPEKAETDPANEPEKGNATAISPEEPGTNPADESEQLTAEMPESGPASVLPKEDAAGIASEPEKASSAHALEKAETILVNEPDQQNAGTLGFNPASELPKEDAAVSQEASMADLANEPGTPSAYASEKTEKNAGNEPEQRHTEMAGTSPSSGEATKTERRPRKHLPFNVLMLKQDRRRITEKKEAPGPRPEQENPAENSGEKPFSFPSLSLLEPPVKQTRDEEWIKEQSYTLDEALENFNVRAKVVNASQGPSVTRFEVQPEPGVKVNKITNLNDDLKLSLAAKDIRIEAPIPGKHTVGIEIPNLKSRPVRLREIIGDPVFQNSKSPLTVTMGLDISGKPVVTDLQKMPHGLIAGATGSGKSVCINSVLVSLLYKAAPQDLKLLLIDPKMVELAPYNQIPHLVSPVITDVKMATAALKWAVEEMERRYELFAHESVRDIHRYNEMAVRTRRFSEKLPYIVIVIDELADLMMTSPGDVEDAICRIAQKARACGIHLILATQRPSVDVITGLIKANIPTRIAFSVSSQVDSRTIIDMSGAEKLLGKGDMLFLENGTSKPVRLQGTFVSDREIDDVVSSVRETAEPEYLFQPEELLRQTETGEEEDELFPDACEFVIHQGGASTSLLQRNFRIGYNRAARLIDMMEQQGIISGAKGSKPRDVLITKSEFMQMQEAESRE
>NC_015634.1|WP_013859982.1|2062057_2063371_-|UDP-N-acetylmuramate--L-alanine-ligase
MTVYHFVGIKGSGMSALAQILHDIGYEVQGSDVEKRFFTQQALEDAGIKILPFNRENIHPGLTVIAGNAFPDTHEEIDEAMKRGIPVIRYHKFLGEFLKNFTSVAVTGAHGKTSTTGLLAHVMHEIKPTSYLIGDGTGKGVPGAEYFVFEACEYRRHFLSYHPDYAIMTNIDFDHPDYYANIDDVFSAFQEMALQVKKGIIAYGDDEQLQKIQAKVPVVFYGFEEGNDFQARNIVTEPQGTKFDVVVRNSFYGTFEIPSFGNHNVLNALGVIALCQYEGIEKEAVETHLKTFHGVKRRFTEKEIGTQIIIDDYAHHPTEIKATIDAARKKYPERELVAVFQPHTFSRTQAFLTEFAESLNLADRVFLCDIFGSAREHHGKLSIYDLQEKVGGSQIIKEEDMSPLLGIENSVILFMGAGDIQKYQKAYETLLQKHVSR
>NC_015634.1|WP_013859980.1|2061330_2061855_-|DUF948-domain-containing-protein
MKIILYLSVALIAVAFLILVIALTRTLKSLSKTLDNLSDTVKGLEGQMHGITEESTKLLEKTNVLVEDIEHKSERLNSVVYAVEDIGVSAQQLSQTLRKVTTSIASAVSKRQDKIAQAVQWGAALKEIKDRWSGKKGAGTNETHPVHAQNPVPKHLLEEPARNDERLLQRVRNS
>NC_015634.1|WP_013859979.1|2060934_2061312_-|YtxH-domain-containing-protein
MSEEQMSTKDFLTGAIVGGVVGAAVALMLAPKSGKELREDLSGQVETIKGKTDGWREFATEKGTQLASQAAEKTKQVRDFAVQKGSQLKDSAVQTAQQAKDKAETDMGDVNQQSSNSGSSSSAGE
>NC_015634.1|WP_013859993.1|2072572_2073427_-|MBL-fold-metallo-hydrolase
MEHLTVGEMTLYWLDGGVTHLDGGAMFGVVPKPLWSRKYPYNEKNQIELRTDPIFFQLNGKNILIESGIGNGKLTDKQKRNYGVTEESQIDRALSAFGLTRENIDIVLMTHLHFDHACGLTMPDDTKGYVPSFPNAVIYVSETEWDEMRHPNIRSKSTYWKENWEAIQHQVQTFKEEVTIEGKVRMVHTGGHSDGHAIVMAESGGEKWIHMADLLPTHAHRNPLWVMAYDDYPMTSIFQKQKWIEEAIRDNAWFVFYHDAVYRALKWDTDGNMAEKVEREKTPV
>NC_015634.1|WP_013859994.1|2073727_2074390_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRNKPWAEEKLKKYPQFVVPDPEKWRGHWQALFGNGNPLHIEIGTGKGRFISEMAEQHPEINFLGIEKQPSVIVSALDKLIEKNSPNVKLLNADGARLREFFAKGDVGRIYLNFSDPWPKNRHEKRRLTYRTFLQLYEDILADGGEIHLKTDNQGLFEYSLQSFSEYGLLLKNISLDLHRSDFSGNVMTEYEEKFSAQGQRIYRCEAKYRNAPGALQG
>NC_015634.1|WP_082178612.1|2074472_2074823_+|YtzH-like-family-protein
MEAPAQDLHAHVNSCISQVKDVFHLALSHRDQLTLLMDILYDHQTDCCGSVSECEQLERLVKSLLVNPAVANDMKQTLTDVYSYSQAGKYAQHLDDHIEAHQNKLEEWVDQLNTYF
>NC_015634.1|WP_013859996.1|2074990_2075782_-|phosphotransferase-family-protein
MLEDILGKGWEIMPAGGATGEAFYAKYQEQSLFLKRNSSPFLAVLSAEGIVPKLVWTKRLENGDTITAQQWVEGRELKPYEMEEERVARMLKKIHDSKPLLTMLQRLGLESMEPESMLHDLKSGAKGEWPDTPGVLDALEFLKREQPNVAYGDCVVCHGDINHNNWLLSNENELFLIDWDGPLIGDPAMDIGMLLYAYIPPENWGRWLRQYGTEMTASLSLRMKWHTIYQAIVMICWHKEKGRYEEMQHWLDFLQSVHGGVKK
>NC_015634.1|WP_041819270.1|2076208_2077159_-|NERD-domain-containing-protein
MGQLLKMQDFVSRYETDLIRYTNQFIRLKKQQWEKFRENWENGPEEEEEAPAPEESRQVLSRMKHWLKRKDTAEIEEQAAPVSPSPPGELDFTPQLAFLPETEDQLKKLFLDQLFRFQLKWASSTLLQQSEIPAALYFDPDLKYFLQRFPDTFLLMYRPVFSFKKAVLEMEHLLISPMAVWCIAFVEKEKDAVFFGSNGRFWKKRTARNEEKILNPAIALARTEKIVRSILKRHDITFPVERALICRNGFIQWPDAPDGLHILDKRPHAEWFRHQRNLRSPFKYMQLKAAQVLLNECLATNTSSGNSGAARGGGGE
>NC_015634.1|WP_013860000.1|2077171_2077741_-|RNA-2',3'-cyclic-phosphodiesterase
MANHYFYAVMLPEALKQKLQQATAGMKSSLPFQRWVHRDDAHITLAFLGAAEEAQLEKANRLIADKIGTFRMLTLVFDHFGTFGKKDEPRVLWAGIQESQPLFDLERMVAGCCLEAGFSLDRRPFHPHITLARKWGGDRPFAAGMLDRYLPETVPFSADRIVLYRTNLHKTPKYEIVQSFRLADAQNLK
>NC_015634.1|WP_019720672.1|2077890_2078058_+|hypothetical-protein
MKIGDHVMYKGENCEIVFIYKSGYCELKKPFLHQIVLARMSELEPAGEEEARLQK
>NC_015634.1|WP_013860002.1|2078106_2078976_-|D-amino-acid-transaminase
MEKLVLNGTLVDRGEASVDIEDRGYQFGDGIYEVVRVYGGRLFTSEMHLKRLYSSAEKLSLHIPYTMEQLTAQLEALVAANQLHTGIVYLQFTRGVAKRKHHFPETSETTFVAYTSEMERPLEKMRKGVKAVLAEDIRWLRCDIKSLNLLGNVLAKQKAAENGAYEAIQHRGETVTEGSSSNVFIVKDGVLLTHPATNLILNGITRQVVFGLCGKEGIPFREEPFTVEDLCTADEVLITSTTSEVMPVVDIDGKPVAGGTPGTVTLKLQHAFDREIHALSAQAVPGAQN
>NC_015634.1|WP_013860003.1|2079072_2080491_-|dipeptidase-PepV
MADIHWMEEVLKRKEDLIRDLKGILQIRSVLDEANATEEAPLGQGVREALQYMLDLGEKDGFKTKNVQNLAGHLEMGEGEDILGILGHVDVVPEGDGWTVDPYSGTVKDGKIYARGSSDDKGPTMAAYYGMKIVKELGVPLEKRVRLIVGTDEESNWRCMDAYFSNEEMPAIGFSPDADFPIIYAEKGIADFDIIQDPEKTEDPQQVELLSFESGRRYNMVPDYAEARLVAHGEQTELLQKFQDYQKETGLAGQDFVDGGVLILKLEGVSAHGAEPENGKSAGLYLAKFLNSVALDRAGAKFIKTLNQFFGRSRGEYFGIGYKDEVSGELTINIGIMSYHQEKGGRIGLNMRYPVTFDLEAGKTKIVSKLKKDGLRFDHFSDQKPHYVDKNDPLITTLAKVYEEQTGEEAKLLAIGGGTYARTLKKGVAFGALFPGREDVMHQKDEYMYVEDLLKATAIYAQSIYELAGKHA
>NC_015634.1|WP_017552518.1|2081223_2081445_+|DeoR/GlpR-transcriptional-regulator
MKPSTDRMLTRIKSIYMFIKEKGTVTTQELVDEFGITPRTIQRDLNVLAYNDLVKSTHRGIWTTTSKKVKMSS

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Crispr_ID: NC_015634_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_4

2119982-2120082

Orphan

Consensus_repeat	Method
GCGGGTGATGGGAATCGAACCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015634_4

>merge|NC_015634|4|2119982-2120082|CRISPRCasFinder
GCGGGTGATGGGAATCGAACCCACGACAACAGCTTGGAAGGCTGTGGTTTTACCACTAAACTACACCCGCATCAAAGGGCGGATGATGGGAATCGAACCCA

>NC_015634|4|4|2119982-2120082|CRISPRCasFinder
GCGGGTGATGGGAATCGAACCCA	CGACAACAGCTTGGAAGGCTGTGGTTTTACCACTAAACTACACCCGCATCAAAGG
GCGGATGATGGGAATCGAACCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013860050.1\|2135136_2137548_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_015634.1\|WP_041819291.1\|2115226_2116972_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NC_015634.1\|WP_148256255.1\|2108768_2108888_+\|DUF4021-domain-containing-protein	unknown	unknown	unknown
NC_015634.1\|WP_041819290.1\|2109008_2109899_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238499
NC_015634.1\|WP_041819297.1\|2134528_2134915_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_015634.1\|WP_013860044.1\|2129063_2130227_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_015634.1\|WP_013860048.1\|2132892_2133960_-\|DUF1646-family-protein	unknown	unknown	gnl\|CDD\|285138
NC_015634.1\|WP_013860051.1\|2137641_2137848_-\|copper-chaperone-CopZ	unknown	unknown	gnl\|CDD\|188014
NC_015634.1\|WP_013860039.1\|2113567_2114386_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NC_015634.1\|WP_041819292.1\|2118570_2119494_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NC_015634.1\|WP_013860040.1\|2114426_2115230_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NC_015634.1\|WP_174760519.1\|2137863_2138187_-\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197387
NC_015634.1\|WP_014097633.1\|2127961_2128168_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NC_015634.1\|WP_013860045.1\|2130550_2130730_-\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_013860036.1\|2109959_2110118_+\|DUF1540-domain-containing-protein	unknown	unknown	gnl\|CDD\|377869
NC_015634.1\|WP_013860047.1\|2132067_2132757_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_015634.1\|WP_013860038.1\|2111483_2112938_-\|o-succinylbenzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|235146
NC_015634.1\|WP_013860037.1\|2110383_2111487_-\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|239433
NC_015634.1\|WP_013860042.1\|2116973_2118305_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
NC_015634.1\|WP_013860046.1\|2131071_2131977_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013860050.1\|2135136_2137548_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_015634.1\|WP_041819291.1\|2115226_2116972_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0
NC_015634.1\|WP_013860047.1\|2132067_2132757_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.46137e-50
NC_015634.1\|WP_041819290.1\|2109008_2109899_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	2.58549e-96
NC_015634.1\|WP_041819297.1\|2134528_2134915_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	8.86954e-07
NC_015634.1\|WP_013860044.1\|2129063_2130227_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.06596e-14
NC_015634.1\|WP_013860048.1\|2132892_2133960_-\|DUF1646-family-protein	gnl\|CDD\|285138	pfam07854, DUF1646, Protein of unknown function (DUF1646). Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaebacterium Methanosarcina mazei.	2.82147e-105
NC_015634.1\|WP_013860051.1\|2137641_2137848_-\|copper-chaperone-CopZ	gnl\|CDD\|188014	TIGR00003, COP-associated_protein, copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases. [Transport and binding proteins, Cations and iron carrying compounds].	1.29443e-18
NC_015634.1\|WP_013860039.1\|2113567_2114386_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NC_015634.1\|WP_041819292.1\|2118570_2119494_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	4.6121e-126
NC_015634.1\|WP_013860040.1\|2114426_2115230_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.54558e-119
NC_015634.1\|WP_174760519.1\|2137863_2138187_-\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|197387	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156. This domain family includes Staphylococcus aureus CsoR (SaCsoR). SaCsoR is Cu(I)-inducible, and regulates the expression of genes involved in copper homeostasis; it represses a genetically unlinked copA-copZ operon. copA encodes a copper efflux P-type ATPase, and copZ, a copper chaperone. This family belongs to a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes Mycobacterium tuberculosis CsoR (MtCsoR), Bacillus subtilis CsoR, and Thermus thermophilus CsoR. The latter three proteins do not belong to this family. CsoRs form homotetramers (dimer of dimers). In MtCsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family, and a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are also well conserved.	6.71524e-39
NC_015634.1\|WP_014097633.1\|2127961_2128168_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.09584e-26
NC_015634.1\|WP_013860036.1\|2109959_2110118_+\|DUF1540-domain-containing-protein	gnl\|CDD\|377869	pfam07561, DUF1540, Domain of Unknown Function (DUF1540). This family has four conserved cysteines, which is suggestive of a metal binding function.	4.73962e-10
NC_015634.1\|WP_013860038.1\|2111483_2112938_-\|o-succinylbenzoate--CoA-ligase	gnl\|CDD\|235146	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase.	0
NC_015634.1\|WP_013860037.1\|2110383_2111487_-\|o-succinylbenzoate-synthase	gnl\|CDD\|239433	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NC_015634.1\|WP_013860042.1\|2116973_2118305_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	8.51937e-133
NC_015634.1\|WP_013860046.1\|2131071_2131977_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.39862e-12

>NC_015634.1|WP_041819292.1|2118570_2119494_+|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MNAQSSPAIGPDKGWRIWWQLTRPHTLTAGFVPVILGTVLALGIARINLLLFAAMLVATLLIQAATNMFNEYYDYKRGLDTEHSVGIGGAIVRNGIKPKTVLHLAFAFFGAAMLIGVYICSQSSWWIAVIGSVCMLVAYLYTAGPFPISSTPLGELISGFFMGVIIILISFFIQTKTITWPIVFVSIPIMILIGAIMLSNNIRDLDGDKANGRKTIAILLGRKGSILLLAVMFALSYLWMAGLVLFGVVTPWVLLVFVSTPKPVRAIKGFIGKSEPLQMLPAMKATAQTNTIFGLLLSISFLIDHFI
>NC_015634.1|WP_013860042.1|2116973_2118305_-|isochorismate-synthase
MKEKTAPALKLASRIIKCRTAPDPLRLFTAGAARFYGSRFFWQDKNRETIFVGFGRVWSCTVTASDGFAQMEDEWRNLKGVGEVYPETAETGTGPVLFGGFAFDGTVAKQEWKTFGQGIFRVPQILFTFKKDAVFLTVNGCGGTESVQEAEKTARSLLNGSTAFPALPLLKAVKEIGSDEWKKSVATAVEFIREGRMDKVVLARKLELAFDGVVSPDAVLAALSVQQHDSYLFVLEEGSESFIGASPERLVKKTGRHILSTCLAGSIKRGRNEAEDLELGKALLSDQKNLSEHGFVVSMIQQVLEPFCNGLNVPDAPVLMRMRDIQHLYTPVTGTVKDKDTTLFQLVKALHPTPALGGIPRQPAMEAIRLLEKMDRGLYGAPIGWVDYRGSGEFCVGIRSGLLKGDHASLYAGCGVVKESEPEEEYKETSVKFTPMLRALGGK
>NC_015634.1|WP_041819291.1|2115226_2116972_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MEHQEIMTTYLAAFIRQLSAMGIRYAVVSPGSRSTPIAMLLAEHPDFKIYMDIDERSAAFFALGLAKEKRKPVVLLCTSGTAAANYYPAVAEANISRVPLIVLTADRPHELRNVGAPQAIDQIRLYGTHVKWFEEMPLPETGEEVLQFVRQTAARAVVTALQQPAGPVHLNFPLREPLVPVLKPSPFAGEVPVPAIENFSGTLRLSEETVEIVAKEIREKDRGLIICGPIDIPGFAEAVVALSEKTGYPVLADPLSQLRSGRHGKERIIENYDSLLKDPKWAGRLAPNVVIRFGAMPVSKPLTLLLKKVKTAAHYIVDGGNGWRDPVKRGTTVVYSDEIDFCKKLSNIIVMNPVSEWFTMWEKLNQQARQIVTASLEVEKTFDEGKTVTELAAALPDGSTLFVGNSMPIRDVDTFFQATDKKIRILANRGANGIDGVVSSATGVSAGCGKAFLLIGDLSFFHDLNGLLMTKMHKLNLCVILINNNGGGIFSFLPQADEPEKFEQLFGTPTDLAFEYAVKMYGGSYVQPQNWDQFRAALSAYKGGLQVIEVRTNRAKNVESHRKIWLQVSREMERYFQGEQQ
>NC_015634.1|WP_013860040.1|2114426_2115230_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MRINGLEYHVETAGDEEPLLLLHGFTGNGNTWNDTVAMLRDEFRCIVVDIIGHGKTEKPDDPGRYDITKAAADLRAVLQALGIRRASVLGYSMGGRLALTFAVRYPQMVDKLVLESASPGLKTEAERLARRERDEQLAERILAGGIEAFVSHWENLPLFASQKQLPAGVRGKIRKQRLENDPAGLANSLRGMGTGAQPSWWGRLSELHFPVLLATGEWDAKFCRIAGEMEERLPNAKKIIFPHAGHAIHVEDPKKFGTMVKGFLKNC
>NC_015634.1|WP_013860039.1|2113567_2114386_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MAVEWKTEHEYEDILYESYNGIAKITINRPHVRNAFRPETVTEMYDAFSRARDDANIGVIILTGMGEKAFCSGGDQKVRGNGGYVGSDNIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYNAQEALEMGLVNAVVPYEKLEEETIKWAEEILEKSPMAIRFLKAAFNADTDGLAGLQQFAGDATLLYYTTDEAKEGRDAFKEKRKPDFGQFPRFP
>NC_015634.1|WP_013860038.1|2111483_2112938_-|o-succinylbenzoate--CoA-ligase
MLPNFLKQRAYLTPNRIALVSQGESLTFAGLYEKAKELARKLSGCGMQAEDTAAVLLNSRAETVAILHALQQLRVRTLFLNHRLTTAEMQYQLTDSGAKWLITEKAFREKTEVLNETATVIQSEALGDLPAAGYEERAEFALGDVCSIMYTSGTTGKPKGVLQTYGNHWWSAAGSALNLGVREDDTWLCAVPLFHISGFSILMRSVFYGMTVYLMEKFDEKETAKLLKSGRITTMSVVANMLQRLLRELGHDSLHPNFRCLLLGGGPAPRPLLEACAEKNIPVFQSYGMTETASQTVTLAPEDSLRKIGSAGKPLFPAQIRIVSDGKVCGPFEHGEIAVKGPNVTIGYLNRPDANRKSFREGWFFTGDIGYLDDEGFLYVLDRRSDLIISGGENIYPAEIEEVLLAHPDILEAGVIGVEDEKWGQVPAAFIVTKRAVRERELQAFCETRLAKFKIPKKVYAVPALPRNASNKLVRRKLLELLPS
>NC_015634.1|WP_013860037.1|2110383_2111487_-|o-succinylbenzoate-synthase
MIGIEKVSLSVIKMPLKSPFENALEKVTEREAILLEVLDKEGVAGFGEAVAFSTPWYTEETVQTCFHMLKDVLVPLLREKPVAHPKEVSGRFRSVRRNHMAKAAIETAIWDLYAKKKQKPLWRLIGGARDRVDAGVAVGSHDTADALRQIGAFVDEGYKRVKVKIKPGHDEAFVREIRDAFPDLTLMADANSTYTLADAPRLKRLDRYGLLMIEQPLAADDIVEHAALQKQLETPVCLDESIVTYHDAESALRLGSFRALNIKIGRVGGLYPAIRLHDLCASRGIPVWCGGMIEFGVSRAFNLALASLPGFTIPGDISSSSRFWEKDIIEPEITAENGQIRLPDRPGTGFEIDRAYVKKIRTYTETI
>NC_015634.1|WP_013860036.1|2109959_2110118_+|DUF1540-domain-containing-protein
MAKDVLCEVRNCVFWEEGNLCSAEEIYIVSHTGTQAENQQETDCKTFESMFS
>NC_015634.1|WP_041819290.1|2109008_2109899_+|zinc-ABC-transporter-substrate-binding-protein
MKKLFPVLLAFTMLFVTACANKQESKQDHKISVYTTVYPLEYVTQQIGGKYVAVKTIYPPGTDEHTYEPSQKDILKLADSDFFFYIGLGLEGFASKAKQVLEGQNVKMMALGDRLPIPDKTNAKADPHVWLDPIYVKQMAGMITTQLSKKMPEQKAYFKKNYDQLAKKLDRVNAAYKQAVLKSDNKEVVVSHAAYGYWVKRYGIKQIPIAGLSTSDEPSQKQLENIIQKVKQDHISYIVFEKNVPSKIAKVVQQETNTKAVYIHHLGVRTNEEIKAHKDYFTLMDDNLKGLEKALQ
>NC_015634.1|WP_148256255.1|2108768_2108888_+|DUF4021-domain-containing-protein
MEEKKRQQKKGGDFGADPDEQAINGDYGMLETEEEDKKD
>NC_015634.1|WP_014097633.1|2127961_2128168_+|helix-turn-helix-transcriptional-regulator
MKNNLPEIRSEFGYSQEKLAKELNVSRQTIISIEKGKYNPSLPLALKIAKIFNMKVEDIFTLNEKEEL
>NC_015634.1|WP_013860044.1|2129063_2130227_+|glycosyltransferase-family-4-protein
MKPIATPFPPVSMGDIHVYDDIIQYFNFKQVKQALPHRPKSITFVTTGIIPYDGGQTTMLHLGTELSKLGFQVYYLSYFSQPRKAMEINAEFNYAGYQGTCLDVSALKTHQSDIWIGTLWESVYVFKDKPGYKMYFVQDYEPYFYPFGDRYYLAKKTYELGLHMVSLGPWCAEMIEKECRVQSPLDVIRFPVDMEQYPFHPRNFLDYKKKKEFRIAVYTKWDSPRRAPITIQIVLNNFLKLCQKHGYQLDIVYFGTDQSAQFINGKNLGQLTKKELHELYLKSDFGIAPSMTNFSLVPYEMMSSGLPVIDFYEGTGRSFMPENCALFCHLDEQSLFQTFQNAISHPGHIAETVKNAQAHLNTVTWKETIKDFINVINTIQSKNRIVS
>NC_015634.1|WP_013860045.1|2130550_2130730_-|hypothetical-protein
MNKKNQIFLAILLILSVAGFIANMIVGPAPRWIKAYNLLVVLAWGVWIFRTGKEKGRYW
>NC_015634.1|WP_013860046.1|2131071_2131977_-|DMT-family-transporter
MNPYIALIAGVLAVTSSAILVKYSTADAGVIAFYRLFFTTIIMLPIFLAARKKAKMRMLKKDVFFSILSGALLAFHFILWFKSLNLTSVASSTVLVTLQPVFTFAGSYFIFRESLSLKAIVCAAFSIFGSILISWGDFFISGKALYGDVLALISCLFVTAYMMIGQYVRQRSDVVSYTFIVYLASTVVLFFYVLFAGEAFYPYSARNWICFLLLAVLPTLAGHSVFSWVVKWISASVVSVAILFEPVGAAILAYLLFGEKISWFQAVGGIIILLSIAYFLAQDHAEHRRAVRLNEKSEPAR
>NC_015634.1|WP_013860047.1|2132067_2132757_+|MgtC/SapB-family-protein
MVFGDLEILYKLGITAVLGLIIGLERELKRKPLGLKTSLVISIISCLLTIVSIQSAYLFNHAHSVQITMDPLRLAAQIVSGIGFLGAGVILKKDNDTITGLTTAAMIWGASGIGIAVGAGFYMEAIAGVVLIIISVEIIPYLMGKAVQTKLRNKDLIIKVIVRNRDAIPCVLDAIEKQQITIENIRIKDLKDQTHLVDLKARASYKHTTVDVYRHISGMDEVAAAEVES
>NC_015634.1|WP_013860048.1|2132892_2133960_-|DUF1646-family-protein
MVMGLTVILLLVLFLPFTKIVERNLEAFLFVMGVAACIVSRSFSWHLVQEALLHPLNITIAVLAMGLLFRWFEKPIEKGIRRISHAMPFRLFIALFVIILGLLSSVITAIVAAIILVAVIRFLRLDRKTEVRLVVLACFAIGLGAVLTPIGEPLSTIVVSKLDADFFYLLRLTGTSVIPAVIVFGVLAALIVKPGQYSSAMETAAGKEPGMATAEDGGLKAEAASESYKEIVIRSFKIYLFVMALTLLGAGFEPFIEAYLLDLSPRVLYWINMVSAVLDNATLAAAEISPAMNDKAIQDILMGLLISGGMLVPGNIPNIIAAGKLKISSLEYARFAFPLGLAAMVVYFVIILFLV
>NC_015634.1|WP_041819297.1|2134528_2134915_-|MFS-transporter
MNRIQKIKNTYYAFNILYNMGIMVFGGTLYLYMKSIHDSYADINLFLSIFWIVGFITEIPSSVIADTFGRKKTLISSCVIRSIGLFLLFFDWGNMVFLILSAIFTLLGESLRSGTVDSWMIDSIREEE
>NC_015634.1|WP_013860050.1|2135136_2137548_-|copper-translocating-P-type-ATPase
MAASLQEKKAESVTLGITGMTCAACANRIEKNLSKVEGVKKVNVNLATEKAAIQYDSKQATVENLIEKVEKTGYGVLEEKAQLNIMGMTCAACANRVERALKKTPGVVRAAVNLATETASVTYLPGQASAEQMIAAVKKAGYDAKIKGEMDPDYEKKMREKAYKKQKIKFAVGAVISVFFLLQMISDIAMHYGGSFSFHMNPWLQLLLATIVQIFVGGHYYRDAYHAIRGGSANMAVLVVLGTSTAYLYSLVLTILGSGRMLYFEASAIVMTLIVLGKLMETRAKGQTSEAMKKLMGLQAKTAHVIRDGKEVEVPVEEVVPGDILFVRAGEKIPVDGVITEGASSVDESMLTGESMPVSKKAGDAVIGATLNKTGSFRFKATKVGKDTALSQIIKLVEEAQGSKAPIQHLADQISGIFVPIVILIALVTFAVTYFAAGFTPAIISMVAVLVIACPCALGLATPTAVMVGTGLGAENGVLIKSAEHLQSAHRITTVVLDKTGTITKGEPEVTDLIPYGGFSEEALLAISAAAEKGSEHPLGAAIVKKAAEKGLQLPNVKEFEAVPGHGIRVKIEEREVLIGNKKMMQDAHIRIDDVINQMEKLEEDGKTAMLVAMDGALSGLIAVADTVKETSAKAIRMLKEMGIETVMITGDNRRTAEAIARQVGVDHVLAEVLPEDKSKEVEKLKRAGNITAMVGDGINDAPALAAADVGIAIGTGTDVAMEAADITLMRGDLMGIVNTIRLSKATMRKIRQNLFWAFAYNVILIPVAAFGLLNPILAGAAMAFSSVSVVGNTLFLRKWQPV
>NC_015634.1|WP_013860051.1|2137641_2137848_-|copper-chaperone-CopZ
MEKVTLNVQGMSCEHCVKAVKGSVGELSGVKNVDVHLAEGKVDVEFDPNEVTLDKVKEAIEDQGYEVA
>NC_015634.1|WP_174760519.1|2137863_2138187_-|metal-sensitive-transcriptional-regulator
MDARDEAPVCPAHSERKSHHSEKVKKNLVSRLNRIEGQVRGVKGLIEKDTYCDDVITQIAAIQSALNGVSKILLEGHLKNCVLERIQEGDLDVLDEFLVTIQKTMRK

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Crispr_ID: NC_015634_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_5

2497017-2497370

TypeI-B

Consensus_repeat	Method
GTTTCAATTCCTTATAGGTAAAATACAAAC	PILER-CR
GTTTCAATTCCTCATAGGTAAAATA	CRISPRCasFinder

5 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

The CRISPR arrays of NC_015634_5

>merge|NC_015634|5|2497017-2497370|PILER-CR,CRISPRCasFinder
GTTTTAATTCCTCATAGGTAAAGTACAAACAAGGCAGACCGGTATTTCTCCGAACTTTGCCCGGAATGGTTTCAATTCCTTATAGGTAAAATATAAACATTTTTTGCGCAGCCAGCTGTGCTTCTTTCTTTTGTTTCAATTCCTTATAGGTAAAGTACAAACAATGAAAATCTGCCTAAATTATTTCAGTCATGCCGACTGTTTCAATTCCTTATAGGTAAAATACAAACGCGAACTCCCACGTTTCATCCCTCATTTCATTATGTTTCAATTCCTCATAGGTAAAATACAAACTGAATCGTCTCCACCAGGTAGTGGGCGTTGTTGGAGTTTCAATTCCTCATAGGTAAAATA

>NC_015634|5|1|2497017-2497310|PILER-CR
GTTTTAATTCCTCATAGGTAAAGTACAAAC	AAGGCAGACCGGTATTTCTCCGAACTTTGCCCGGAATG
GTTTCAATTCCTTATAGGTAAAATATAAAC	ATTTTTTGCGCAGCCAGCTGTGCTTCTTTCTTTT
GTTTCAATTCCTTATAGGTAAAGTACAAAC	AATGAAAATCTGCCTAAATTATTTCAGTCATGCCGACT
GTTTCAATTCCTTATAGGTAAAATACAAAC	GCGAACTCCCACGTTTCATCCCTCATTTCATTAT
GTTTCAATTCCTCATAGGTAAAATACAAAC

>NC_015634|5|5|2497017-2497370|CRISPRCasFinder
GTTTTAATTCCTCATAGGTAAAGTA	CAAACAAGGCAGACCGGTATTTCTCCGAACTTTGCCCGGAATG
GTTTCAATTCCTTATAGGTAAAATA	TAAACATTTTTTGCGCAGCCAGCTGTGCTTCTTTCTTTT
GTTTCAATTCCTTATAGGTAAAGTA	CAAACAATGAAAATCTGCCTAAATTATTTCAGTCATGCCGACT
GTTTCAATTCCTTATAGGTAAAATA	CAAACGCGAACTCCCACGTTTCATCCCTCATTTCATTAT
GTTTCAATTCCTCATAGGTAAAATA	CAAACTGAATCGTCTCCACCAGGTAGTGGGCGTTGTTGGA
GTTTCAATTCCTCATAGGTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013860397.1\|2505440_2507987_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_015634.1\|WP_013860401.1\|2511753_2512461_-\|CRISPR-associated-protein-Cas6	unknown	unknown	gnl\|CDD\|224499
NC_015634.1\|WP_041819430.1\|2503218_2503512_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015634.1\|WP_013860389.1\|2492770_2494072_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NC_015634.1\|WP_013860384.1\|2487774_2488197_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_017554267.1\|2504949_2505444_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015634.1\|WP_013860388.1\|2491397_2492543_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|236506
NC_015634.1\|WP_013860400.1\|2509700_2511599_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_015634.1\|WP_013860395.1\|2503511_2504513_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_015634.1\|WP_041819728.1\|2490390_2491242_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_015634.1\|WP_013860385.1\|2488212_2489118_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_013860383.1\|2487147_2487750_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_041819432.1\|2513065_2516311_-\|SNF2-helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|377999
NC_015634.1\|WP_013860399.1\|2508769_2509717_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_015634.1\|WP_013860398.1\|2508005_2508755_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_015634.1\|WP_013860391.1\|2494652_2495273_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_015634.1\|WP_013860392.1\|2495958_2496378_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015634.1\|WP_187287463.1\|2496497_2496773_-\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_013860403.1\|2516460_2517048_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380315
NC_015634.1\|WP_013860386.1\|2489140_2490055_-\|DUF1002-domain-containing-protein	unknown	unknown	gnl\|CDD\|377628

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013860397.1\|2505440_2507987_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.73299e-28
NC_015634.1\|WP_013860401.1\|2511753_2512461_-\|CRISPR-associated-protein-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	0.00322303
NC_015634.1\|WP_041819430.1\|2503218_2503512_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.2064e-24
NC_015634.1\|WP_013860389.1\|2492770_2494072_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NC_015634.1\|WP_017554267.1\|2504949_2505444_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.16575e-54
NC_015634.1\|WP_013860388.1\|2491397_2492543_-\|metallophosphoesterase	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	2.72571e-153
NC_015634.1\|WP_013860395.1\|2503511_2504513_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.03362e-140
NC_015634.1\|WP_041819728.1\|2490390_2491242_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.5858e-75
NC_015634.1\|WP_013860398.1\|2508005_2508755_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.1312e-42
NC_015634.1\|WP_041819432.1\|2513065_2516311_-\|SNF2-helicase-associated-domain-containing-protein	gnl\|CDD\|377999	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N-terminus of the SNF2 family N-terminal domain (pfam00176) and together with the Helicase conserved C-terminal domain (pfam00271). The function of the domain is not clear.	4.77315e-102
NC_015634.1\|WP_013860399.1\|2508769_2509717_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.25652e-34
NC_015634.1\|WP_013860403.1\|2516460_2517048_+\|nitroreductase-family-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.54356e-75
NC_015634.1\|WP_013860391.1\|2494652_2495273_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.3128e-70
NC_015634.1\|WP_013860392.1\|2495958_2496378_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.14266e-15
NC_015634.1\|WP_013860386.1\|2489140_2490055_-\|DUF1002-domain-containing-protein	gnl\|CDD\|377628	pfam06207, DUF1002, Protein of unknown function (DUF1002). This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.	3.63307e-83

>NC_015634.1|WP_187287463.1|2496497_2496773_-|hypothetical-protein
MVYRIVLFLLPEVLPVIIPVPTVPCSLVCSCLARKKRAQVPPAGIIKQKQAALPKKDFKVFPIEGLLSEPDKALSLVRSAAKLVDAAFFFL
>NC_015634.1|WP_013860392.1|2495958_2496378_+|helix-turn-helix-transcriptional-regulator
MADHGNENMDNVKAIFAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSIDYLLGLTNHVGLKTNEAVSNPEKKLLETLSHEPDLYQMMLKDPEKMASRIYQTWNLIRELDDEDDRNT
>NC_015634.1|WP_013860391.1|2494652_2495273_+|histidine-phosphatase-family-protein
MTLFYFVRHGQTEWNADRNRYCGRSDIGLSETGVRQAKLAAGFLKDIPFDAVYASTLGRAVRTAEILVKGRNLEIHQDPRLVETDFGAWEGERQEDFSVNYADNWEAWLQDPGATHAGYTGETAVQVYNRVRACINELVEKHPEETVLVVAHSMAIRFFVAGTLEVPFKNYRMIPQDNTGITIYKEAPENAGFLAINLNTHLYAIK
>NC_015634.1|WP_013860389.1|2492770_2494072_-|cation:dicarboxylase-symporter-family-transporter
MKRVSLAWQIFIGLILGIAIGGIFHGNDTVAHILQPFGDFFLRLIKMIVIPIVVSSLIVGVAGAGDMKQVGKLGLKALIYFEIVTTIAIVVGLLAGNLFHPGTGVDMGSLAKTSISSYVETTKETQHNGIVDTILNIVPTNLFESLSQGNMLPIIFFSVMFGIGVAAIGEKGKPVLRFFQGVSEAMFYVTNLVMKVAPIGVFGLIGVTVAQFGLKSLIPLSKLVFTVYGTIIFFVVVVLGLIGWLFRVNIFKLFKILKDELILAYSTASSEAVLPRLMEKMEKFGCPKSITTLVIPTGYSFNLDGSTLYQSLAALFIAQMYGIHMSIGAQISLVLVLMVTSKGIAGVPGVSFVVLLATLGTVGIPIEGLAFIAGIDRILDMARTVCNVVGNTLATIIVSKWEGKYDKEKGEAYLAEISGGGHDSKDHKYVTES
>NC_015634.1|WP_013860388.1|2491397_2492543_-|metallophosphoesterase
MGKKMLLWAAVLSLALFPRTEHADAAFWFQPKRATVDLRLLETSDLHGYMLNYDYAARIEAETYGLALTASLIAAERKAAKNTMLFDDGDLLEGSEMAAYAARRPLKKGEVHPFIRVMNHLNYDAATVGNHDFHYGLDFLKQTISGAKFPFVNANIYYNFEKNDTDDQNFFKPYVILNKKVEDRHGHSHHLKIGVIGFVTPSVIEWEKPSLGGKVKAKDILHTAAWFVPRMKAEGADLIIALAHCGVDPAAKQPFYTGDAVYLLSEVKGIDAILFGHQHRVFPSEFFAGVPGVDIRKGTINGVPAVMPGKWGSHLGVISLTLEKKGEKWEMTEAQSEAKPVYATHNQQAKSIVRPDPDIVRMTAELQKNVLGSKFTLYSRN
>NC_015634.1|WP_041819728.1|2490390_2491242_+|MurR/RpiR-family-transcriptional-regulator
MGTQLQSFPCLHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGFQALKIALAAEAARPGKNMDEAVKDTDNEKAVAVKVFESNIQTLRDTIHTLNQKHLHEAVEWICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFISHAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIVQLSLIDTLYVNVMLRYKDTNEEILQKGKETYTV
>NC_015634.1|WP_013860386.1|2489140_2490055_-|DUF1002-domain-containing-protein
MLKRLGLIWFIAMIALGFSMNGVAKASGDNSTVIDEKYGKPIVVTGAALSASQKAEVEKELGVDDANNVEEITVTGDDLVHYIPDGNRNSNMYSSAKITRTDSGGVQVHIVTPENITEVTADMYKNALLTAGIKNAEVEVASPLKVTGHSALVGIYKAYDDSSKSGDKLDSDRTEVASQELSVATDLAKKEGLSNDKVTQLLTEIKQEIADQHPATKEDIEKIVDDKLKDLNINLSDSDRQLLYDLFDQMRKLNINFDSVKSELSSLSDKLSDKINKAAGDKDFWQSVKDFFQNIFDAIRGLFQ
>NC_015634.1|WP_013860385.1|2488212_2489118_+|hypothetical-protein
MVRQVKKTKSFLLTAAFIAFNFCFFTNISVAESPATDGFIIEADRVEGVMLPPGITAGDTATKQNQVMLRLQYADVTIYGLKITKVLQTPGGPVTIHMNAPGPIQLKNMKADATKVDFGSIYVPEKAGQIGMKNVRLVAHQQLADNADLPGLDLSMETGAANIDTSGSDEETLRKQADQLTQLLKGGTSDQNKEEKNGKPVTADKAKAGTQDKAKTETQDTEKHHDAKTDGKVTDQNKNKKPENADDTKTKNAEGTESDNTGTKPASGQETEKNGTPAKTAPSQSSTDKNVQQKEGSNAGN
>NC_015634.1|WP_013860384.1|2487774_2488197_+|hypothetical-protein
MGKFHMFRMNFRNWRRSRPFWGATFTLLSGMIILYVPVQLLEIAAAPGSMVSIGLIFGGLIFLIGGMGYFFPKFNMVFGILAIFLSVLSIMGAMGGFFIGTLLGIIGGSLSVSWRVIRQEEVPASVGPMEEIAAGSAEER
>NC_015634.1|WP_013860383.1|2487147_2487750_+|hypothetical-protein
MNEGALVLQGRTSKKWFFTALLSGLIFLGGLLAVLGINGVAVAATVGGIGKFNVSFKEMQGTGFKLYGSLYGDPSKGQDHVKPVFVNEIDKVTIQDLVIKKDVKIPVLGDYQVRITAGDGSTPVHLDGLIQKAALVQGDAVFTNMNISENYVTTDDPQAASKAFTQGADTLTIKDGSLDTHYLFQKVANLPNLKVQFVKK
>NC_015634.1|WP_041819430.1|2503218_2503512_-|CRISPR-associated-endonuclease-Cas2
MGAKKPLNFNYVFLFYDINERRVQKVFKICKKYLYHHQKSVFRGAITPSQLISLKKELNKVIHKDEDFISIVKFLSEFYFDEETIGKNPGDGESIFL
>NC_015634.1|WP_013860395.1|2503511_2504513_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKSTKYLLSMGELKKKDNSLVFKNERGHTYIPIESVREIYCLNEISLNSKLFHFLSNAGVIVHFFNYYQQYAGTFYPKEQLVSGKLTVMQAKLFETKRLDVAKSIVNGIAKNIHYVLYHYYKHGKTDLKPYLDWLKKEVPKLLKKEISIKQILFIEGEIWRNFYGTFHLFLPESFVMNKRVRRPPDNPINALISFGNTILYSKTLSQIYRTHLNQTISYLHEPGESRFSLSLDLCEVFKPIIVFKTIFETVNNRKLQVGKHFDKDLNYALLNEAGRKVFIEALEERLSSVILHPRLKRKVTLETAIRLDAYKLIKYILEDQPFIPFNAKEMV
>NC_015634.1|WP_017554267.1|2504949_2505444_-|CRISPR-associated-protein-Cas4
MNITGTMVNYYFHCKRQCWLFANRVNMEDNSENVRIGKVLHELKLQEKRNTEVLIENIKVDKITDKYLVEMKKSDADVEAVRWQVLYYLKVLKDKGIEKQGKITFEEKNKQNHKVIYVELNEEMETQLEKILKDMNTYLEQEYPIAPLNDKKCKKCAYFEYCYV
>NC_015634.1|WP_013860397.1|2505440_2507987_-|CRISPR-associated-helicase/endonuclease-Cas3
MRRIREYIDAAPPILAHIGGAEPETLEEHSKLVMDFVHLLEEENGLKEAVERCINALRFKGESLPETLQSLVTEWFYQGIYLHDLGKINPAFQSKKMKNEQVDIQKKEMDSKHSLLSSLLFLDIFYSEIEEKVPRNYQAFMAHVLYCFTYLISRHHTYLENVSDDKYFDALEELCSRVQRHPYYIQFYREAKKFAEFDLTGVEDYQREQDSHEPFSFYILMKLFYSALVACDFYATYTYNVGGQKPGFRFLTEHHIKDLRKTYEDTEVLKGIRRFQQDPSSFDNIPINSLRSQIFLEAETQLLNRLDKNIFYLESPTGSGKTNMSINLALRLLESGQSLNKIIYVFPFNTLVEQTKASLDQIFPDDFQTKVPIKVVNSVTPIITKEDKRNHGEKPIDLKEEVLMRQMLQYPITVTSHVNFFNYLFGQGRESNLPFVHLCNSVVILDEIQSYRNDRWIEIIHFLESLSELLNMKIIIMSATLPKLDRLLLHGKEVAAELLPNARKYYENPIFKDRVHVHFELLEKGTMDLDELEEFLDQLIIEKGPKRILFEFVTKRSAREFHRRILEKYEKKRPVILLTGDDHSYYRKKVIEAINKKEEGVFQLQDVILIATQVVEAGVDIDMDIGFKNISTLDSDEQLLGRINRSCLREDCHAYFFLLDDVSKKLKNSNDYRLEKDLRDREYQNDLINKDFHRFYQNVFRRLIETSQERNNHNIEHFLYMVQSLNFGGVADQMKLIEQQTNTLFIAYLLELDNQEKVDGREIWNQYKSVLKDSQPDYAERQVKLSELRQIMDYFTFNIFGEPVINDDQLGNLYFVEKGELYMEIDPFTHMQRFNPQKYQKTSEDIFI
>NC_015634.1|WP_013860398.1|2508005_2508755_-|type-I-B-CRISPR-associated-protein-Cas5
MRALAFELRGRTAFFKKPDVNANIYFTYSHIHKIALLGMLGAILGLKGYEAQSRDIKANGDNEANRYPEFYEKLKDLKVSIVPHGDRGYFSKKIQVFNNSVGYASFEQGQNLIIKEQWLENPHWTVYLLDDGTEICMELFNRLKSHQSVYLPYLGKNDHPASITKVREVELENAWAPGSCIDSLFCSKGVDLGRSRTEPYLYQEFLPIKMDDILNSYVFEQMFFTNQVVNKIQNSNVIYCAEEKNLFFF
>NC_015634.1|WP_013860399.1|2508769_2509717_-|type-I-CRISPR-associated-protein-Cas7
MAKLNKRIYGIAGIGAYMSNWNADFTGRPKTTSTGIVFGSDKALKYSIKRYWVNQGDKVLYYKSYIVQDKGGDKAKLQPKDLTERYQEVFQTELTDKTPSKEVLKNLFSAVDVMNFGATFAVKKQNIGLTGAVQIGQGLNKYEDTNVEIQDILSPFRNANKSDADASSLGKKIVSNEAHYVYPFSVNYNHYDEYISLLDGFEGYTIEAYEKLKEGLLRGATALNTNSKAGCENELALFVTCREGSELFLPQLDSYVEVWKEGSQIIYNLVALEQFLSQFGDDIELIEVFYNPVRIAVKKETNLFAEKNIYTFEQL
>NC_015634.1|WP_013860400.1|2509700_2511599_-|hypothetical-protein
MLKDLVPKFFEELNEHPGLILDNYDLKEGAYFRLFLDRTLEENLANLEYVIIRKKEEVGAAKKDIVKWFKIRDYYSSLLYDSTNKAVDNQKKFHNTNGLTLFVKSNIIMDKEAKFPVSEIYPHLEKFYTDYLPKAGEKLFDLYPLQSKSKNKKSVELAERQDFFKKEYGKLVEYLHSETRKQLYQKVQDFWRQYFDQFLLIIQEIIRENKIDNYIKIFFDADEDIYRKEYQIYVLPRIFNVNDYNQLNHGKILGLPAYDVNMNAKKPFLELKSMKAKVPTRVTVEEALVIKDLSKWLEQQGKFKEYILPGSNPFAIDRERWLRRDPGSIHMRLDKNGSIEYFEQVPFKSREKLLIEIENFLQIEEKDNAQKYVKYYDPIQSTGQLYHQINELFFNNYLKYGFFNSDIPKVKENEFPGEMQTIYVMARQALYDFIFKGTNQTIKPFIKKFSRQLIEIQICKTSKGLNFKKTAEAFLLRTALMKFIGYEEGSILAATTKALYEKLSIKLKDKETFVECESDPEFYFLAGQLGYYLLFQSEAKDKNFGMAEPIMQIKYANQLKRHLRDLFETYSHAIRFNYVTVKNAMSMVFGYLTSRERIDETNKDYLFAGLIGKNLLLQSNKKEGDKQDGEAK
>NC_015634.1|WP_013860401.1|2511753_2512461_-|CRISPR-associated-protein-Cas6
MNYTEYIITTLLKRNIRAVELQETLGKFINQSMLLEEGLKKFHEERRPKLYVFSGLYPVETQSKLYKAGKVYVFRIRSLDEKMITSLISCMKEVSSETFQVLATEKKRVAYKPITELVTITPFIATIDNKPWMPNQHSIGLLMERMHMNAEKKYKTFYKEELNCSQFVQRVEITNRKPIAMTYKNIRLLGHKARIFVNSDEASQKLAFTVLGAGLLEKGSSLGTSFCFANFLKLN
>NC_015634.1|WP_041819432.1|2513065_2516311_-|SNF2-helicase-associated-domain-containing-protein
MVELLLFEEDVEDMYSPAIFRRGMRYYLEGRVKKLIPDSTMEFTWTAIVKGSKTYYVTVRYDEEFGGFANECTCPAFAQYGECKHEVAAMLAIANREEEVAEPDIGDVPEMHQNMKTLQLMNIFSGLQQSMMETKHHAARKPLRLEYFLKATNISGFGSDHFLTIEFKIGPGRTYVVRNIKEFLGHVSHGNPHEFTKNFTYDPDEYEFEKEDHEIVEMLLFMLSTQQLYEASIDNWYRYTFERELVIPPFIARPLIEKLANRKCKFKYERYAADSIVLHQEEELPLSFRLDGNSQGGPGFLLQLKSLRDLLLFEQYGLAFYKGGFYELSTDQLALLTALEDFYKKSGDEVEIQQEQMSPFLSNVLPGLKRIGKVRLTKDIKGKIVQPKLQTKIFMDNEDEKITLRIEHHYGSRVIDPFTDEETPDDDKILLRDVEKEQKIMMMIEQSPLKYNGKQLYLEDDEEALYEFIFTILPQLEEEVEVYIAGGIKSYFQTSRYTPVTSVDMDTSGNFLEVNFDMDGIDEEEIRNVLRSVIEKKRYYRLPDGAFVSLESDAFEHIGQLLEELHVPKKELEDNRLKVPLYRGLQVEELMKTRDKYAVKFGKAFRKLVQQLKNPEDTDFELPKGLEAKMRDYQVTGFQWFKSLAFYRLGGILADDMGLGKTLQSIAYMLSEKEANPDIKPFLVVAPASLIYNWKSEIEKFAPALSSMVIAGTPSERKAFFEAGELPDVLITSYPTLRQDIGEYEKIEFDTLILDEAQAIKNYATKTAAAVRNVQAGRRFALSGTPIENSIEELWSIFQAVLPGFFPPLSEFRKMEQEKISRMVRPFILRRVKKDVLKELPDKIETNHLSELTKPQKELYLAYLDRIRHETAQTLAEGDFNRNRIKILAGLTRLRQLCCHPSLFVENYRGDSGKLEQLVELAHTAIENGKRLLIFSQFSSMLQMIRTRLSDEGIDSFYLDGQTPSRERVEMADRFNSGEKNVFLISLKAGGTGLNLTGADTVVLYDLWWNPAVEEQAAGRAHRIGQKNVVQVIRLIARGTIEEKIYELQQKKKELIEQVIQPGETMLNSLNEEEIKELLGM
>NC_015634.1|WP_013860403.1|2516460_2517048_+|nitroreductase-family-protein
MVKTLSPREAQYDIDPVYLERWSPRSFLEKEVPEEVLLSLFEAARWAPSAYNHQPWRFILARTQEDREKVLSFLGEYNRIWCKNVPAFALILSKTENETGPIRSHAFDAGAAWGYLSLEAVRKGLATHPMTGFDFEKAREVLNIPADYAIDALIAIGYRGEKEALPASLQERETPSARRPVKESVFEGSFGNPVK

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Crispr_ID: NC_015634_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_6

2499794-2503038

TypeI-B

II-B

Consensus_repeat	Method
ATTTAAATACATCCAATGTTAAAGTTCAAC	CRISPRCasFinder
ATTTAAATACATCCAATGTTAAAGTTCAAC	CRT
ATTTAAATACATCCAATGTTAAAGTTCAAC	PILER-CR

49 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

The CRISPR arrays of NC_015634_6

>merge|NC_015634|6|2499794-2503038|CRISPRCasFinder,CRT,PILER-CR
CCCTAAATACATCCAATGTTAAAGTTCAACTTACACGGCTACCTAGCGCAAAACGGAATACCATAATTTAAATACATCCAATGTTAAAGTTCAACTGGGAATTCCGGTTCGAATTTACGACCCTCAAGTAATTTAAATACATCCAATGTTAAAGTTCAACAAAACGAATTTGGATATTGACCGCTCCCGTTCAGAATTTAAATACATCCAATGTTAAAGTTCAACCTTTTATTATAACAATAAAAGTAACTTTTTTCAAAATTTAAATACATCCAATGTTAAAGTTCAACAAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCTATTTAAATACATCCAATGTTAAAGTTCAACGACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAATATTTAAATACATCCAATGTTAAAGTTCAACAGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTTATTTAAATACATCCAATGTTAAAGTTCAACGTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTTATTTAAATACATCCAATGTTAAAGTTCAACAGCTAGACGCCCTGATTATGCGTACCATTAATAACAATTTAAATACATTCAATGTTAAAGTTCAACTTAATCAGTTTTCCGTCATCATCCCTAAAGTATAACATTTAAATACATCCAATGTTAAAGTTCAACGAAAAGGAACTGCTGAAAGAACATTGCAACCTGGAATTTAAATACATCCAATGTTAAAGTTCAACCACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGAATTTAAATACATCCAATGGGTAAGTTCAACGAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGAAATTAAATACATCCAATGTTAAAGTTCAACGGGTCAACCGCTTTAAAATTAAAAAATGCATTACTACTATTTAAATACATCCAGTGTTAAAGTTCAACGTCTTTTAAGTCCTTATATACTTTAGCTTTCATAAATTTAAATACATCCAATGTTAAAGTTCAACTGTCGTGAAAGAATACCCTGCTTCCATCATTTTTATTAAATACATCCAATGTTAAAGTTCAACTACGGAAACACAACGGCATCCGGTCGTAGAAGTAGTATTTAAATACATCCAATGTTAAAGTTCAACCTAAAGACACTTTTACAGATGACTCGGTTGATACGATATTTAAATACATCCAATGTTAAAGTTCAACATCGTCTGGGTTTGCGGGAACAACCGACAAATTTGGATTTAAATACATCCAATGTTAAAGTTCAACGGGGTATAGGTCACTTGGTATCATTGAAAATGCCAAAATTTAAATACATCCAATGTTAAAGTTCAACGGAGTGAGAAAATGCGGGCTGAACGCTGCTACACATATTTAAATACATCCAATGTTAAAGTTCAACATTTCTACTTGCTGGATCGCGAACATAATCGCCTATTTAAATACATCCAATGTTAAAGTTCAACTATGCACCCGATTTATAGTAAAATGCCGATAAATAAATTTAAATACATCCAATGTTAAAGTTCAACGGCGCTTTTACTATGTATAGGCGGTGAATGAAACAAATTTAAATACATCCAATGTTAAAGTTCAACTTAAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGATATTTAAATACATCCAATGTTAAAGTTCAACCTGAACCTGAATATATCGAAATGGATCATCTTGCGATATTTAAATACATCCAATGTTAAAGTTCAACACCAATCCAGAAATCCCTGCAGCCGGGCATATTCTATTTAAATACATCCAATGTTAAAGTTCAACGCGCAGTTCTTCGGAAATCCTGTGGGATATTTCGTCATTTAAATACATCCAATGTTAAAGTTCAACTGGAGAGACATTGATGAGGCAGAAGGTGTTGTCCTATTTAAATACATCCAATGTTAAAGTTCAACCAGACGACGCTTACGATTGGGACCAGATGCTTATATTTAAATACATCCAATGTTAAAGTTCAACGCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAAATTTAAATACATCCAATGTTAAAGTTCAACTAACGGCCTGCCTGATAAAAAACCGGATTATCCCTGATTTAAATACATCCAATGTTAAAGTTCAACGCGCAGCCCAACAAACTTGGAAATCTCAAAAGCATATTTAAATACATCCAATGTTAAAGTTCAACCGCCAGTCCAGCGGACAGCCCAGGTAGATATAGGCCATTTAAATACATCCAATGTTAAAGTTCAACGTATACGGAAACGTGTCTCAGTATCTCACGCACGTATTTAAATACATCCAATGTTAAAGTTCAACTTTGATAACCGCATTGTCGATCGTCGTTTGCCCGGATTTAAATACATCCAATGTTAAAGTTCAACGCTACCATCTGGATTTATTTTCTGCCAGATAAAAGCATTTAAATACATCCAATGTTAAAGTTCAACGTTTCTGGACTTTCTGGATGATTAGCATCAGTCAGATTTAAATACATCCAATGTTAAAGTTCAACGCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAAATTTAAATACATCCAATGTTAAAGTTCAACGGGAAATACATGCGGTTTCGAAAGAATTGGAGAATTTAAATACATCCAATGTTAAAGTTCAACGTACACCAGGTCATGGTAAGATAAGTTGTAGATTGATATTTAAATACATCCAATGTTAAAGTTCAACGCAATTTTCCATGCGTTGTTCATAAGTACTTTCATATTTAAATACATCCAATGTTAAAGTTCAACAAATCCCCAATATTCATACCATCCGGCAGGTTCCAATTTAAATACATCCAATGTTAAAGTTCAACGATATAAACTTGGTGAAAAAGCAAAGGTATATTGATTTAAATACATCCAATGTTAAAGTTCAACCCGTTAAGCGCGGCGACACCGTTAGCGAGATAGCTGATTTAAATACATCCAATGTTAAAGTTCAACTAAATGAATGGCAGACCGAGTATAATCTCGCGACAAATTTAAATACATCCAATGTTAAAGTTCAACTTCTACTCAATACAGCTGGCTGTCAGTCATCTTTATTTAAATACATCCAATGTTAAAGTTCAACAAAAACGTTGGACGCTATCGTGCAAATAAGCAAGTTTATTTAAATACATCCAATGTTAAAGTTCAACCATTTCTTTTTTTGTTAAAGAGTATGGACAACTCTTATTTAAATACATCCAATGTTAAAGTTCAAC

>NC_015634|6|6|2499794-2503038|CRISPRCasFinder
CCCTAAATACATCCAATGTTAAAGTTCAAC	TTACACGGCTACCTAGCGCAAAACGGAATACCATA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGGGAATTCCGGTTCGAATTTACGACCCTCAAGTA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAACGAATTTGGATATTGACCGCTCCCGTTCAGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTTTTATTATAACAATAAAAGTAACTTTTTTCAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCTAGACGCCCTGATTATGCGTACCATTAATAACA
ATTTAAATACATTCAATGTTAAAGTTCAAC	TTAATCAGTTTTCCGTCATCATCCCTAAAGTATAAC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GAAAAGGAACTGCTGAAAGAACATTGCAACCTGGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGA
ATTTAAATACATCCAATGGGTAAGTTCAAC	GAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGA
AATTAAATACATCCAATGTTAAAGTTCAAC	GGGTCAACCGCTTTAAAATTAAAAAATGCATTACTACT
ATTTAAATACATCCAGTGTTAAAGTTCAAC	GTCTTTTAAGTCCTTATATACTTTAGCTTTCATAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGTCGTGAAAGAATACCCTGCTTCCATCATTTT
TATTAAATACATCCAATGTTAAAGTTCAAC	TACGGAAACACAACGGCATCCGGTCGTAGAAGTAGT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTAAAGACACTTTTACAGATGACTCGGTTGATACGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ATCGTCTGGGTTTGCGGGAACAACCGACAAATTTGG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGGGTATAGGTCACTTGGTATCATTGAAAATGCCAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGAGTGAGAAAATGCGGGCTGAACGCTGCTACACAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ATTTCTACTTGCTGGATCGCGAACATAATCGCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	TATGCACCCGATTTATAGTAAAATGCCGATAAATAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGCGCTTTTACTATGTATAGGCGGTGAATGAAACAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTAAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTGAACCTGAATATATCGAAATGGATCATCTTGCGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ACCAATCCAGAAATCCCTGCAGCCGGGCATATTCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCGCAGTTCTTCGGAAATCCTGTGGGATATTTCGTC
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGGAGAGACATTGATGAGGCAGAAGGTGTTGTCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CAGACGACGCTTACGATTGGGACCAGATGCTTAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TAACGGCCTGCCTGATAAAAAACCGGATTATCCCTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCGCAGCCCAACAAACTTGGAAATCTCAAAAGCAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CGCCAGTCCAGCGGACAGCCCAGGTAGATATAGGCC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTATACGGAAACGTGTCTCAGTATCTCACGCACGT
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTTGATAACCGCATTGTCGATCGTCGTTTGCCCGG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTACCATCTGGATTTATTTTCTGCCAGATAAAAGC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTTTCTGGACTTTCTGGATGATTAGCATCAGTCAG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGGAAATACATGCGGTTTCGAAAGAATTGGAGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTACACCAGGTCATGGTAAGATAAGTTGTAGATTGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCAATTTTCCATGCGTTGTTCATAAGTACTTTCAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAATCCCCAATATTCATACCATCCGGCAGGTTCCA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GATATAAACTTGGTGAAAAAGCAAAGGTATATTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	CCGTTAAGCGCGGCGACACCGTTAGCGAGATAGCTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	TAAATGAATGGCAGACCGAGTATAATCTCGCGACAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTCTACTCAATACAGCTGGCTGTCAGTCATCTTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAAACGTTGGACGCTATCGTGCAAATAAGCAAGTTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CATTTCTTTTTTTGTTAAAGAGTATGGACAACTCTT
ATTTAAATACATCCAATGTTAAAGTTCAAC

>NC_015634|6|1|2499794-2503038|CRT
CCCTAAATACATCCAATGTTAAAGTTCAAC	TTACACGGCTACCTAGCGCAAAACGGAATACCATA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGGGAATTCCGGTTCGAATTTACGACCCTCAAGTA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAACGAATTTGGATATTGACCGCTCCCGTTCAGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTTTTATTATAACAATAAAAGTAACTTTTTTCAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCTAGACGCCCTGATTATGCGTACCATTAATAACA
ATTTAAATACATTCAATGTTAAAGTTCAAC	TTAATCAGTTTTCCGTCATCATCCCTAAAGTATAAC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GAAAAGGAACTGCTGAAAGAACATTGCAACCTGGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGA
ATTTAAATACATCCAATGGGTAAGTTCAAC	GAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGA
AATTAAATACATCCAATGTTAAAGTTCAAC	GGGTCAACCGCTTTAAAATTAAAAAATGCATTACTACT
ATTTAAATACATCCAGTGTTAAAGTTCAAC	GTCTTTTAAGTCCTTATATACTTTAGCTTTCATAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGTCGTGAAAGAATACCCTGCTTCCATCATTTT
TATTAAATACATCCAATGTTAAAGTTCAAC	TACGGAAACACAACGGCATCCGGTCGTAGAAGTAGT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTAAAGACACTTTTACAGATGACTCGGTTGATACGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ATCGTCTGGGTTTGCGGGAACAACCGACAAATTTGG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGGGTATAGGTCACTTGGTATCATTGAAAATGCCAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGAGTGAGAAAATGCGGGCTGAACGCTGCTACACAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ATTTCTACTTGCTGGATCGCGAACATAATCGCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	TATGCACCCGATTTATAGTAAAATGCCGATAAATAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGCGCTTTTACTATGTATAGGCGGTGAATGAAACAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTAAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTGAACCTGAATATATCGAAATGGATCATCTTGCGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	ACCAATCCAGAAATCCCTGCAGCCGGGCATATTCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCGCAGTTCTTCGGAAATCCTGTGGGATATTTCGTC
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGGAGAGACATTGATGAGGCAGAAGGTGTTGTCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CAGACGACGCTTACGATTGGGACCAGATGCTTAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TAACGGCCTGCCTGATAAAAAACCGGATTATCCCTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCGCAGCCCAACAAACTTGGAAATCTCAAAAGCAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CGCCAGTCCAGCGGACAGCCCAGGTAGATATAGGCC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTATACGGAAACGTGTCTCAGTATCTCACGCACGT
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTTGATAACCGCATTGTCGATCGTCGTTTGCCCGG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTACCATCTGGATTTATTTTCTGCCAGATAAAAGC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTTTCTGGACTTTCTGGATGATTAGCATCAGTCAG
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GGGAAATACATGCGGTTTCGAAAGAATTGGAGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTACACCAGGTCATGGTAAGATAAGTTGTAGATTGAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GCAATTTTCCATGCGTTGTTCATAAGTACTTTCAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAATCCCCAATATTCATACCATCCGGCAGGTTCCA
ATTTAAATACATCCAATGTTAAAGTTCAAC	GATATAAACTTGGTGAAAAAGCAAAGGTATATTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	CCGTTAAGCGCGGCGACACCGTTAGCGAGATAGCTG
ATTTAAATACATCCAATGTTAAAGTTCAAC	TAAATGAATGGCAGACCGAGTATAATCTCGCGACAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	TTCTACTCAATACAGCTGGCTGTCAGTCATCTTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAAACGTTGGACGCTATCGTGCAAATAAGCAAGTTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	CATTTCTTTTTTTGTTAAAGAGTATGGACAACTCTT
ATTTAAATACATCCAATGTTAAAGTTCAAC

>NC_015634|6|2|2499859-2503038|PILER-CR
ATTTAAATACATCCAATGTTAAAGTTCAAC	TGGGAATTCCGGTTCGAATTTACGACCCTCAAGTA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAACGAATTTGGATATTGACCGCTCCCGTTCAGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CTTTTATTATAACAATAAAAGTAACTTTTTTCAAA
ATTTAAATACATCCAATGTTAAAGTTCAAC	AAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAAT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	GTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTT
ATTTAAATACATCCAATGTTAAAGTTCAAC	AGCTAGACGCCCTGATTATGCGTACCATTAATAACA
ATTTAAATACATTCAATGTTAAAGTTCAAC	TTAATCAGTTTTCCGTCATCATCCCTAAAGTATAAC
ATTTAAATACATCCAATGTTAAAGTTCAAC	GAAAAGGAACTGCTGAAAGAACATTGCAACCTGGA
ATTTAAATACATCCAATGTTAAAGTTCAAC	CACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGA
ATTTAAATACATCCAATGGGTAAGTTCAAC	GAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGAAA
TTAAATACATCCAATGTTAAAGTTCAACGG	GTCAACCGCTTTAAAATTAAAAAATGCATTACTACTAT
TTAAATACATCCAGTGTTAAAGTTCAACGT	CTTTTAAGTCCTTATATACTTTAGCTTTCATAAAT
TTAAATACATCCAATGTTAAAGTTCAACTG	TCGTGAAAGAATACCCTGCTTCCATCATTTTTA
TTAAATACATCCAATGTTAAAGTTCAACTA	CGGAAACACAACGGCATCCGGTCGTAGAAGTAGTAT
TTAAATACATCCAATGTTAAAGTTCAACCT	AAAGACACTTTTACAGATGACTCGGTTGATACGATAT
TTAAATACATCCAATGTTAAAGTTCAACAT	CGTCTGGGTTTGCGGGAACAACCGACAAATTTGGAT
TTAAATACATCCAATGTTAAAGTTCAACGG	GGTATAGGTCACTTGGTATCATTGAAAATGCCAAAAT
TTAAATACATCCAATGTTAAAGTTCAACGG	AGTGAGAAAATGCGGGCTGAACGCTGCTACACATAT
TTAAATACATCCAATGTTAAAGTTCAACAT	TTCTACTTGCTGGATCGCGAACATAATCGCCTAT
TTAAATACATCCAATGTTAAAGTTCAACTA	TGCACCCGATTTATAGTAAAATGCCGATAAATAAAT
TTAAATACATCCAATGTTAAAGTTCAACGG	CGCTTTTACTATGTATAGGCGGTGAATGAAACAAAT
TTAAATACATCCAATGTTAAAGTTCAACTT	AAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGATAT
TTAAATACATCCAATGTTAAAGTTCAACCT	GAACCTGAATATATCGAAATGGATCATCTTGCGATAT
TTAAATACATCCAATGTTAAAGTTCAACAC	CAATCCAGAAATCCCTGCAGCCGGGCATATTCTAT
TTAAATACATCCAATGTTAAAGTTCAACGC	GCAGTTCTTCGGAAATCCTGTGGGATATTTCGTCAT
TTAAATACATCCAATGTTAAAGTTCAACTG	GAGAGACATTGATGAGGCAGAAGGTGTTGTCCTAT
TTAAATACATCCAATGTTAAAGTTCAACCA	GACGACGCTTACGATTGGGACCAGATGCTTATAT
TTAAATACATCCAATGTTAAAGTTCAACGC	TGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAAAT
TTAAATACATCCAATGTTAAAGTTCAACTA	ACGGCCTGCCTGATAAAAAACCGGATTATCCCTGAT
TTAAATACATCCAATGTTAAAGTTCAACGC	GCAGCCCAACAAACTTGGAAATCTCAAAAGCATAT
TTAAATACATCCAATGTTAAAGTTCAACCG	CCAGTCCAGCGGACAGCCCAGGTAGATATAGGCCAT
TTAAATACATCCAATGTTAAAGTTCAACGT	ATACGGAAACGTGTCTCAGTATCTCACGCACGTAT
TTAAATACATCCAATGTTAAAGTTCAACTT	TGATAACCGCATTGTCGATCGTCGTTTGCCCGGAT
TTAAATACATCCAATGTTAAAGTTCAACGC	TACCATCTGGATTTATTTTCTGCCAGATAAAAGCAT
TTAAATACATCCAATGTTAAAGTTCAACGT	TTCTGGACTTTCTGGATGATTAGCATCAGTCAGAT
TTAAATACATCCAATGTTAAAGTTCAACGC	TGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAAAT
TTAAATACATCCAATGTTAAAGTTCAACGG	GAAATACATGCGGTTTCGAAAGAATTGGAGAAT
TTAAATACATCCAATGTTAAAGTTCAACGT	ACACCAGGTCATGGTAAGATAAGTTGTAGATTGATAT
TTAAATACATCCAATGTTAAAGTTCAACGC	AATTTTCCATGCGTTGTTCATAAGTACTTTCATAT
TTAAATACATCCAATGTTAAAGTTCAACAA	ATCCCCAATATTCATACCATCCGGCAGGTTCCAAT
TTAAATACATCCAATGTTAAAGTTCAACGA	TATAAACTTGGTGAAAAAGCAAAGGTATATTGAT
TTAAATACATCCAATGTTAAAGTTCAACCC	GTTAAGCGCGGCGACACCGTTAGCGAGATAGCTGAT
TTAAATACATCCAATGTTAAAGTTCAACTA	AATGAATGGCAGACCGAGTATAATCTCGCGACAAAT
TTAAATACATCCAATGTTAAAGTTCAACTT	CTACTCAATACAGCTGGCTGTCAGTCATCTTTAT
TTAAATACATCCAATGTTAAAGTTCAACAA	AAACGTTGGACGCTATCGTGCAAATAAGCAAGTTTAT
TTAAATACATCCAATGTTAAAGTTCAACCA	TTTCTTTTTTTGTTAAAGAGTATGGACAACTCTTAT
TTAAATACATCCAATGTTAAAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013860397.1\|2505440_2507987_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_015634.1\|WP_013860401.1\|2511753_2512461_-\|CRISPR-associated-protein-Cas6	unknown	unknown	gnl\|CDD\|224499
NC_015634.1\|WP_041819430.1\|2503218_2503512_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015634.1\|WP_013860389.1\|2492770_2494072_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NC_015634.1\|WP_013860384.1\|2487774_2488197_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_017554267.1\|2504949_2505444_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015634.1\|WP_013860388.1\|2491397_2492543_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|236506
NC_015634.1\|WP_013860400.1\|2509700_2511599_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_015634.1\|WP_013860395.1\|2503511_2504513_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_015634.1\|WP_041819728.1\|2490390_2491242_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_015634.1\|WP_013860385.1\|2488212_2489118_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_013860383.1\|2487147_2487750_+\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_041819432.1\|2513065_2516311_-\|SNF2-helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|377999
NC_015634.1\|WP_013860399.1\|2508769_2509717_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_015634.1\|WP_013860398.1\|2508005_2508755_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_015634.1\|WP_013860391.1\|2494652_2495273_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_015634.1\|WP_013860392.1\|2495958_2496378_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015634.1\|WP_187287463.1\|2496497_2496773_-\|hypothetical-protein	unknown	unknown	unknown
NC_015634.1\|WP_013860403.1\|2516460_2517048_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380315
NC_015634.1\|WP_013860386.1\|2489140_2490055_-\|DUF1002-domain-containing-protein	unknown	unknown	gnl\|CDD\|377628

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013860397.1\|2505440_2507987_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.73299e-28
NC_015634.1\|WP_013860401.1\|2511753_2512461_-\|CRISPR-associated-protein-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	0.00322303
NC_015634.1\|WP_041819430.1\|2503218_2503512_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.2064e-24
NC_015634.1\|WP_013860389.1\|2492770_2494072_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NC_015634.1\|WP_017554267.1\|2504949_2505444_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.16575e-54
NC_015634.1\|WP_013860388.1\|2491397_2492543_-\|metallophosphoesterase	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	2.72571e-153
NC_015634.1\|WP_013860395.1\|2503511_2504513_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.03362e-140
NC_015634.1\|WP_041819728.1\|2490390_2491242_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.5858e-75
NC_015634.1\|WP_013860398.1\|2508005_2508755_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.1312e-42
NC_015634.1\|WP_041819432.1\|2513065_2516311_-\|SNF2-helicase-associated-domain-containing-protein	gnl\|CDD\|377999	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N-terminus of the SNF2 family N-terminal domain (pfam00176) and together with the Helicase conserved C-terminal domain (pfam00271). The function of the domain is not clear.	4.77315e-102
NC_015634.1\|WP_013860399.1\|2508769_2509717_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.25652e-34
NC_015634.1\|WP_013860403.1\|2516460_2517048_+\|nitroreductase-family-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.54356e-75
NC_015634.1\|WP_013860391.1\|2494652_2495273_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.3128e-70
NC_015634.1\|WP_013860392.1\|2495958_2496378_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.14266e-15
NC_015634.1\|WP_013860386.1\|2489140_2490055_-\|DUF1002-domain-containing-protein	gnl\|CDD\|377628	pfam06207, DUF1002, Protein of unknown function (DUF1002). This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.	3.63307e-83

>NC_015634.1|WP_187287463.1|2496497_2496773_-|hypothetical-protein
MVYRIVLFLLPEVLPVIIPVPTVPCSLVCSCLARKKRAQVPPAGIIKQKQAALPKKDFKVFPIEGLLSEPDKALSLVRSAAKLVDAAFFFL
>NC_015634.1|WP_013860392.1|2495958_2496378_+|helix-turn-helix-transcriptional-regulator
MADHGNENMDNVKAIFAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSIDYLLGLTNHVGLKTNEAVSNPEKKLLETLSHEPDLYQMMLKDPEKMASRIYQTWNLIRELDDEDDRNT
>NC_015634.1|WP_013860391.1|2494652_2495273_+|histidine-phosphatase-family-protein
MTLFYFVRHGQTEWNADRNRYCGRSDIGLSETGVRQAKLAAGFLKDIPFDAVYASTLGRAVRTAEILVKGRNLEIHQDPRLVETDFGAWEGERQEDFSVNYADNWEAWLQDPGATHAGYTGETAVQVYNRVRACINELVEKHPEETVLVVAHSMAIRFFVAGTLEVPFKNYRMIPQDNTGITIYKEAPENAGFLAINLNTHLYAIK
>NC_015634.1|WP_013860389.1|2492770_2494072_-|cation:dicarboxylase-symporter-family-transporter
MKRVSLAWQIFIGLILGIAIGGIFHGNDTVAHILQPFGDFFLRLIKMIVIPIVVSSLIVGVAGAGDMKQVGKLGLKALIYFEIVTTIAIVVGLLAGNLFHPGTGVDMGSLAKTSISSYVETTKETQHNGIVDTILNIVPTNLFESLSQGNMLPIIFFSVMFGIGVAAIGEKGKPVLRFFQGVSEAMFYVTNLVMKVAPIGVFGLIGVTVAQFGLKSLIPLSKLVFTVYGTIIFFVVVVLGLIGWLFRVNIFKLFKILKDELILAYSTASSEAVLPRLMEKMEKFGCPKSITTLVIPTGYSFNLDGSTLYQSLAALFIAQMYGIHMSIGAQISLVLVLMVTSKGIAGVPGVSFVVLLATLGTVGIPIEGLAFIAGIDRILDMARTVCNVVGNTLATIIVSKWEGKYDKEKGEAYLAEISGGGHDSKDHKYVTES
>NC_015634.1|WP_013860388.1|2491397_2492543_-|metallophosphoesterase
MGKKMLLWAAVLSLALFPRTEHADAAFWFQPKRATVDLRLLETSDLHGYMLNYDYAARIEAETYGLALTASLIAAERKAAKNTMLFDDGDLLEGSEMAAYAARRPLKKGEVHPFIRVMNHLNYDAATVGNHDFHYGLDFLKQTISGAKFPFVNANIYYNFEKNDTDDQNFFKPYVILNKKVEDRHGHSHHLKIGVIGFVTPSVIEWEKPSLGGKVKAKDILHTAAWFVPRMKAEGADLIIALAHCGVDPAAKQPFYTGDAVYLLSEVKGIDAILFGHQHRVFPSEFFAGVPGVDIRKGTINGVPAVMPGKWGSHLGVISLTLEKKGEKWEMTEAQSEAKPVYATHNQQAKSIVRPDPDIVRMTAELQKNVLGSKFTLYSRN
>NC_015634.1|WP_041819728.1|2490390_2491242_+|MurR/RpiR-family-transcriptional-regulator
MGTQLQSFPCLHRIQTMYSEFSAKERKIADYILENPQRLVHSTINQVADQLLVADATVFRFCKRIGFSGFQALKIALAAEAARPGKNMDEAVKDTDNEKAVAVKVFESNIQTLRDTIHTLNQKHLHEAVEWICRAKHIVFYGCGSASVIALDALEKFLQTDLAVTAYTDPHLQLLSAARCTKEDVAVFISHAGADKEMLKLLQAVQKTGAKTIAITQFAKSPLSQKADVPLFTVSQEADFRFSSFSARIVQLSLIDTLYVNVMLRYKDTNEEILQKGKETYTV
>NC_015634.1|WP_013860386.1|2489140_2490055_-|DUF1002-domain-containing-protein
MLKRLGLIWFIAMIALGFSMNGVAKASGDNSTVIDEKYGKPIVVTGAALSASQKAEVEKELGVDDANNVEEITVTGDDLVHYIPDGNRNSNMYSSAKITRTDSGGVQVHIVTPENITEVTADMYKNALLTAGIKNAEVEVASPLKVTGHSALVGIYKAYDDSSKSGDKLDSDRTEVASQELSVATDLAKKEGLSNDKVTQLLTEIKQEIADQHPATKEDIEKIVDDKLKDLNINLSDSDRQLLYDLFDQMRKLNINFDSVKSELSSLSDKLSDKINKAAGDKDFWQSVKDFFQNIFDAIRGLFQ
>NC_015634.1|WP_013860385.1|2488212_2489118_+|hypothetical-protein
MVRQVKKTKSFLLTAAFIAFNFCFFTNISVAESPATDGFIIEADRVEGVMLPPGITAGDTATKQNQVMLRLQYADVTIYGLKITKVLQTPGGPVTIHMNAPGPIQLKNMKADATKVDFGSIYVPEKAGQIGMKNVRLVAHQQLADNADLPGLDLSMETGAANIDTSGSDEETLRKQADQLTQLLKGGTSDQNKEEKNGKPVTADKAKAGTQDKAKTETQDTEKHHDAKTDGKVTDQNKNKKPENADDTKTKNAEGTESDNTGTKPASGQETEKNGTPAKTAPSQSSTDKNVQQKEGSNAGN
>NC_015634.1|WP_013860384.1|2487774_2488197_+|hypothetical-protein
MGKFHMFRMNFRNWRRSRPFWGATFTLLSGMIILYVPVQLLEIAAAPGSMVSIGLIFGGLIFLIGGMGYFFPKFNMVFGILAIFLSVLSIMGAMGGFFIGTLLGIIGGSLSVSWRVIRQEEVPASVGPMEEIAAGSAEER
>NC_015634.1|WP_013860383.1|2487147_2487750_+|hypothetical-protein
MNEGALVLQGRTSKKWFFTALLSGLIFLGGLLAVLGINGVAVAATVGGIGKFNVSFKEMQGTGFKLYGSLYGDPSKGQDHVKPVFVNEIDKVTIQDLVIKKDVKIPVLGDYQVRITAGDGSTPVHLDGLIQKAALVQGDAVFTNMNISENYVTTDDPQAASKAFTQGADTLTIKDGSLDTHYLFQKVANLPNLKVQFVKK
>NC_015634.1|WP_041819430.1|2503218_2503512_-|CRISPR-associated-endonuclease-Cas2
MGAKKPLNFNYVFLFYDINERRVQKVFKICKKYLYHHQKSVFRGAITPSQLISLKKELNKVIHKDEDFISIVKFLSEFYFDEETIGKNPGDGESIFL
>NC_015634.1|WP_013860395.1|2503511_2504513_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKSTKYLLSMGELKKKDNSLVFKNERGHTYIPIESVREIYCLNEISLNSKLFHFLSNAGVIVHFFNYYQQYAGTFYPKEQLVSGKLTVMQAKLFETKRLDVAKSIVNGIAKNIHYVLYHYYKHGKTDLKPYLDWLKKEVPKLLKKEISIKQILFIEGEIWRNFYGTFHLFLPESFVMNKRVRRPPDNPINALISFGNTILYSKTLSQIYRTHLNQTISYLHEPGESRFSLSLDLCEVFKPIIVFKTIFETVNNRKLQVGKHFDKDLNYALLNEAGRKVFIEALEERLSSVILHPRLKRKVTLETAIRLDAYKLIKYILEDQPFIPFNAKEMV
>NC_015634.1|WP_017554267.1|2504949_2505444_-|CRISPR-associated-protein-Cas4
MNITGTMVNYYFHCKRQCWLFANRVNMEDNSENVRIGKVLHELKLQEKRNTEVLIENIKVDKITDKYLVEMKKSDADVEAVRWQVLYYLKVLKDKGIEKQGKITFEEKNKQNHKVIYVELNEEMETQLEKILKDMNTYLEQEYPIAPLNDKKCKKCAYFEYCYV
>NC_015634.1|WP_013860397.1|2505440_2507987_-|CRISPR-associated-helicase/endonuclease-Cas3
MRRIREYIDAAPPILAHIGGAEPETLEEHSKLVMDFVHLLEEENGLKEAVERCINALRFKGESLPETLQSLVTEWFYQGIYLHDLGKINPAFQSKKMKNEQVDIQKKEMDSKHSLLSSLLFLDIFYSEIEEKVPRNYQAFMAHVLYCFTYLISRHHTYLENVSDDKYFDALEELCSRVQRHPYYIQFYREAKKFAEFDLTGVEDYQREQDSHEPFSFYILMKLFYSALVACDFYATYTYNVGGQKPGFRFLTEHHIKDLRKTYEDTEVLKGIRRFQQDPSSFDNIPINSLRSQIFLEAETQLLNRLDKNIFYLESPTGSGKTNMSINLALRLLESGQSLNKIIYVFPFNTLVEQTKASLDQIFPDDFQTKVPIKVVNSVTPIITKEDKRNHGEKPIDLKEEVLMRQMLQYPITVTSHVNFFNYLFGQGRESNLPFVHLCNSVVILDEIQSYRNDRWIEIIHFLESLSELLNMKIIIMSATLPKLDRLLLHGKEVAAELLPNARKYYENPIFKDRVHVHFELLEKGTMDLDELEEFLDQLIIEKGPKRILFEFVTKRSAREFHRRILEKYEKKRPVILLTGDDHSYYRKKVIEAINKKEEGVFQLQDVILIATQVVEAGVDIDMDIGFKNISTLDSDEQLLGRINRSCLREDCHAYFFLLDDVSKKLKNSNDYRLEKDLRDREYQNDLINKDFHRFYQNVFRRLIETSQERNNHNIEHFLYMVQSLNFGGVADQMKLIEQQTNTLFIAYLLELDNQEKVDGREIWNQYKSVLKDSQPDYAERQVKLSELRQIMDYFTFNIFGEPVINDDQLGNLYFVEKGELYMEIDPFTHMQRFNPQKYQKTSEDIFI
>NC_015634.1|WP_013860398.1|2508005_2508755_-|type-I-B-CRISPR-associated-protein-Cas5
MRALAFELRGRTAFFKKPDVNANIYFTYSHIHKIALLGMLGAILGLKGYEAQSRDIKANGDNEANRYPEFYEKLKDLKVSIVPHGDRGYFSKKIQVFNNSVGYASFEQGQNLIIKEQWLENPHWTVYLLDDGTEICMELFNRLKSHQSVYLPYLGKNDHPASITKVREVELENAWAPGSCIDSLFCSKGVDLGRSRTEPYLYQEFLPIKMDDILNSYVFEQMFFTNQVVNKIQNSNVIYCAEEKNLFFF
>NC_015634.1|WP_013860399.1|2508769_2509717_-|type-I-CRISPR-associated-protein-Cas7
MAKLNKRIYGIAGIGAYMSNWNADFTGRPKTTSTGIVFGSDKALKYSIKRYWVNQGDKVLYYKSYIVQDKGGDKAKLQPKDLTERYQEVFQTELTDKTPSKEVLKNLFSAVDVMNFGATFAVKKQNIGLTGAVQIGQGLNKYEDTNVEIQDILSPFRNANKSDADASSLGKKIVSNEAHYVYPFSVNYNHYDEYISLLDGFEGYTIEAYEKLKEGLLRGATALNTNSKAGCENELALFVTCREGSELFLPQLDSYVEVWKEGSQIIYNLVALEQFLSQFGDDIELIEVFYNPVRIAVKKETNLFAEKNIYTFEQL
>NC_015634.1|WP_013860400.1|2509700_2511599_-|hypothetical-protein
MLKDLVPKFFEELNEHPGLILDNYDLKEGAYFRLFLDRTLEENLANLEYVIIRKKEEVGAAKKDIVKWFKIRDYYSSLLYDSTNKAVDNQKKFHNTNGLTLFVKSNIIMDKEAKFPVSEIYPHLEKFYTDYLPKAGEKLFDLYPLQSKSKNKKSVELAERQDFFKKEYGKLVEYLHSETRKQLYQKVQDFWRQYFDQFLLIIQEIIRENKIDNYIKIFFDADEDIYRKEYQIYVLPRIFNVNDYNQLNHGKILGLPAYDVNMNAKKPFLELKSMKAKVPTRVTVEEALVIKDLSKWLEQQGKFKEYILPGSNPFAIDRERWLRRDPGSIHMRLDKNGSIEYFEQVPFKSREKLLIEIENFLQIEEKDNAQKYVKYYDPIQSTGQLYHQINELFFNNYLKYGFFNSDIPKVKENEFPGEMQTIYVMARQALYDFIFKGTNQTIKPFIKKFSRQLIEIQICKTSKGLNFKKTAEAFLLRTALMKFIGYEEGSILAATTKALYEKLSIKLKDKETFVECESDPEFYFLAGQLGYYLLFQSEAKDKNFGMAEPIMQIKYANQLKRHLRDLFETYSHAIRFNYVTVKNAMSMVFGYLTSRERIDETNKDYLFAGLIGKNLLLQSNKKEGDKQDGEAK
>NC_015634.1|WP_013860401.1|2511753_2512461_-|CRISPR-associated-protein-Cas6
MNYTEYIITTLLKRNIRAVELQETLGKFINQSMLLEEGLKKFHEERRPKLYVFSGLYPVETQSKLYKAGKVYVFRIRSLDEKMITSLISCMKEVSSETFQVLATEKKRVAYKPITELVTITPFIATIDNKPWMPNQHSIGLLMERMHMNAEKKYKTFYKEELNCSQFVQRVEITNRKPIAMTYKNIRLLGHKARIFVNSDEASQKLAFTVLGAGLLEKGSSLGTSFCFANFLKLN
>NC_015634.1|WP_041819432.1|2513065_2516311_-|SNF2-helicase-associated-domain-containing-protein
MVELLLFEEDVEDMYSPAIFRRGMRYYLEGRVKKLIPDSTMEFTWTAIVKGSKTYYVTVRYDEEFGGFANECTCPAFAQYGECKHEVAAMLAIANREEEVAEPDIGDVPEMHQNMKTLQLMNIFSGLQQSMMETKHHAARKPLRLEYFLKATNISGFGSDHFLTIEFKIGPGRTYVVRNIKEFLGHVSHGNPHEFTKNFTYDPDEYEFEKEDHEIVEMLLFMLSTQQLYEASIDNWYRYTFERELVIPPFIARPLIEKLANRKCKFKYERYAADSIVLHQEEELPLSFRLDGNSQGGPGFLLQLKSLRDLLLFEQYGLAFYKGGFYELSTDQLALLTALEDFYKKSGDEVEIQQEQMSPFLSNVLPGLKRIGKVRLTKDIKGKIVQPKLQTKIFMDNEDEKITLRIEHHYGSRVIDPFTDEETPDDDKILLRDVEKEQKIMMMIEQSPLKYNGKQLYLEDDEEALYEFIFTILPQLEEEVEVYIAGGIKSYFQTSRYTPVTSVDMDTSGNFLEVNFDMDGIDEEEIRNVLRSVIEKKRYYRLPDGAFVSLESDAFEHIGQLLEELHVPKKELEDNRLKVPLYRGLQVEELMKTRDKYAVKFGKAFRKLVQQLKNPEDTDFELPKGLEAKMRDYQVTGFQWFKSLAFYRLGGILADDMGLGKTLQSIAYMLSEKEANPDIKPFLVVAPASLIYNWKSEIEKFAPALSSMVIAGTPSERKAFFEAGELPDVLITSYPTLRQDIGEYEKIEFDTLILDEAQAIKNYATKTAAAVRNVQAGRRFALSGTPIENSIEELWSIFQAVLPGFFPPLSEFRKMEQEKISRMVRPFILRRVKKDVLKELPDKIETNHLSELTKPQKELYLAYLDRIRHETAQTLAEGDFNRNRIKILAGLTRLRQLCCHPSLFVENYRGDSGKLEQLVELAHTAIENGKRLLIFSQFSSMLQMIRTRLSDEGIDSFYLDGQTPSRERVEMADRFNSGEKNVFLISLKAGGTGLNLTGADTVVLYDLWWNPAVEEQAAGRAHRIGQKNVVQVIRLIARGTIEEKIYELQQKKKELIEQVIQPGETMLNSLNEEEIKELLGM
>NC_015634.1|WP_013860403.1|2516460_2517048_+|nitroreductase-family-protein
MVKTLSPREAQYDIDPVYLERWSPRSFLEKEVPEEVLLSLFEAARWAPSAYNHQPWRFILARTQEDREKVLSFLGEYNRIWCKNVPAFALILSKTENETGPIRSHAFDAGAAWGYLSLEAVRKGLATHPMTGFDFEKAREVLNIPADYAIDALIAIGYRGEKEALPASLQERETPSARRPVKESVFEGSFGNPVK

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Crispr_ID: NC_015634_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015634_7

2834622-2834729

Orphan

Consensus_repeat	Method
TCCGGACTCGTTGCCGGCATGCTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015634_7

>merge|NC_015634|7|2834622-2834729|CRISPRCasFinder
TCCGGACTCGTTGCCGGCATGCTGCTTGGAGGCATGCTTTTGCAAAGAAAAGCGGCTTCTCCCGCTTAAAAAAAGCCAATTCTCCGGACTCGTTGCCGGCGTGCTGCT

>NC_015634|7|7|2834622-2834729|CRISPRCasFinder
TCCGGACTCGTTGCCGGCATGCTGCT	TGGAGGCATGCTTTTGCAAAGAAAAGCGGCTTCTCCCGCTTAAAAAAAGCCAATTC
TCCGGACTCGTTGCCGGCGTGCTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015634.1\|WP_013860676.1\|2828002_2828404_-\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|340411
NC_015634.1\|WP_013860690.1\|2838608_2839292_+\|beta-phosphoglucomutase	unknown	unknown	gnl\|CDD\|213672
NC_015634.1\|WP_013860680.1\|2830162_2830513_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|225216
NC_015634.1\|WP_041819511.1\|2828768_2829596_-\|RsbT-co-antagonist-protein-RsbRA	unknown	unknown	gnl\|CDD\|378028
NC_015634.1\|WP_013860682.1\|2830948_2832100_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NC_015634.1\|WP_013860695.1\|2845709_2847017_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_015634.1\|WP_013860683.1\|2832301_2833318_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|225390
NC_015634.1\|WP_013860684.1\|2833458_2833809_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NC_015634.1\|WP_013860691.1\|2839298_2840255_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_015634.1\|WP_013860693.1\|2842126_2843932_+\|alpha-glycosidase	unknown	unknown	gnl\|CDD\|200477
NC_015634.1\|WP_013860674.1\|2826578_2826908_-\|anti-sigma-factor-antagonist	unknown	unknown	gnl\|CDD\|273042
NC_015634.1\|WP_049783546.1\|2836725_2837211_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_015634.1\|WP_013860675.1\|2826944_2827988_-\|PP2C-family-protein-serine/threonine-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_015634.1\|WP_014096808.1\|2830517_2830796_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223932
NC_015634.1\|WP_013860694.1\|2844136_2845408_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270376
NC_015634.1\|WP_013860687.1\|2834926_2836354_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_015634.1\|WP_041819513.1\|2837616_2838237_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058
NC_015634.1\|WP_013860696.1\|2847018_2847870_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226354
NC_015634.1\|WP_013860692.1\|2840415_2842107_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_015634.1\|WP_017553290.1\|2828408_2828765_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912

Protein	Function_ID	Function_description	E-value
NC_015634.1\|WP_013860676.1\|2828002_2828404_-\|anti-sigma-regulatory-factor	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	2.42637e-48
NC_015634.1\|WP_013860690.1\|2838608_2839292_+\|beta-phosphoglucomutase	gnl\|CDD\|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	2.23828e-96
NC_015634.1\|WP_013860680.1\|2830162_2830513_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|225216	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms].	9.58872e-41
NC_015634.1\|WP_041819511.1\|2828768_2829596_-\|RsbT-co-antagonist-protein-RsbRA	gnl\|CDD\|378028	pfam08678, Rsbr_N, Rsbr N terminal. Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N terminal domain belongs to the globin fold superfamily.	1.39771e-47
NC_015634.1\|WP_013860682.1\|2830948_2832100_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.3262e-174
NC_015634.1\|WP_013860695.1\|2845709_2847017_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.7358e-69
NC_015634.1\|WP_013860683.1\|2832301_2833318_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|225390	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane].	2.52674e-30
NC_015634.1\|WP_013860684.1\|2833458_2833809_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.63515e-51
NC_015634.1\|WP_013860691.1\|2839298_2840255_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	7.88806e-97
NC_015634.1\|WP_013860693.1\|2842126_2843932_+\|alpha-glycosidase	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_015634.1\|WP_013860674.1\|2826578_2826908_-\|anti-sigma-factor-antagonist	gnl\|CDD\|273042	TIGR00377, Anti-sigma_F_factor_antagonist, anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. [Regulatory functions, Protein interactions].	1.63399e-33
NC_015634.1\|WP_049783546.1\|2836725_2837211_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.61266e-38
NC_015634.1\|WP_013860675.1\|2826944_2827988_-\|PP2C-family-protein-serine/threonine-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	2.51949e-87
NC_015634.1\|WP_014096808.1\|2830517_2830796_-\|hypothetical-protein	gnl\|CDD\|223932	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription].	4.55632e-16
NC_015634.1\|WP_013860694.1\|2844136_2845408_+\|extracellular-solute-binding-protein	gnl\|CDD\|270376	cd13658, PBP2_CMBP, The periplasmic binding component of ABC transport systems specific for cyclo/maltodextrin; possess the type 2 periplasmic binding fold. This group includes the periplasmic cyclo/maltodextrin-binding protein of Thermoactinomyces vulgaris ATP-binding cassette transporter and related proteins. Cyclodextrins are a family of compounds composed of glucose units connected by 1, 4 glycosidic linkages to form a series of oligosaccharide rings, and their cavity is hydrophibic which allows cyclodextrins to accomodate hydrophobic molecules/moieties in the cavity. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.40928e-151
NC_015634.1\|WP_013860687.1\|2834926_2836354_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.84171e-180
NC_015634.1\|WP_041819513.1\|2837616_2838237_+\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	6.00113e-25
NC_015634.1\|WP_013860696.1\|2847018_2847870_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	3.01303e-130
NC_015634.1\|WP_013860692.1\|2840415_2842107_+\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_015634.1\|WP_017553290.1\|2828408_2828765_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	1.5632e-34

>NC_015634.1|WP_013860684.1|2833458_2833809_-|holo-ACP-synthase
MIKGIGIDIVELERIKKLYERQPRFPGRILTKVEQQQFGKLAEKRKIEFLAGRFAAKEAYSKAFGTGIGGALSFQEIEIAKDKNGRPYFSKPAGLRAHLSITHSREYAFAQVILED
>NC_015634.1|WP_013860683.1|2832301_2833318_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKRKYWVLFAALFVIFLLSACGAKKPQDVAGKLNEKVEKMDGYKLNAKMTLETGNEPRTYNIEVWHNRPGYYRVNLKNAGEGQSQMILRNKEGVFVVTPALNKSYKFQSDWPNNTSQAYLYESLVKDILKDKEAKMTVKKNRYVFETKTRYQNHKMLPYQQITFDKRTLAPVSVKVMDTDRNTLVSVLFTKVDFNAKFDSNAFDTKKNMTGAKLEVPVDGKVGNKEFSVKYPTAKIGGTTLLDEQEVAVANGKRVILTYTGDKTYTLIEEKAEVLPAASTEPLPANGEMADLGFAFGIKTGDSLSWTVNGVEYTLASKSLSAAEMMEVAQSVGGEPEK
>NC_015634.1|WP_013860682.1|2830948_2832100_-|alanine-racemase
MAFYRDTWVEVDLDAISENVGNMRRLLPEHTQIIAVVKANAYGHGAEYVAKTALASGASALAVAFLDEALALRKKGITAPILVLGAARPEDAGIAAEENISLTVFQKDWLEEAGRYLTGRKLSVHLKCDTGMGRIGVRTVQELKEVEKIVNQQSCFFFEGIFTHFATADEIDMTLYEKQYSRFQDMVLNLENRPPYVHCANSAAALRFDQSPFNAVRFGIAMYGLSPSPAIKPVLPFPLKEAFSLHTKVTHVKQIHAGDTVSYGATYQASGDEWIATLPIGYADGWIRRLSGQEVIIGGERAPIVGRICMDQCMVRIPRPVAVGTKATLIGKQGDLSVPVDEIAKKLDTINYEVTCSISSRVPRVFRKNGNDAAGVSNPVLEG
>NC_015634.1|WP_014096808.1|2830517_2830796_-|hypothetical-protein
MSEPISTEILVRLPQQLLTELDGFAETENMNRNELIYRATKMYLKERKKRQIRETMRRGYMEMAKINLAIASEAIQAEYEAEHTVESLVSGG
>NC_015634.1|WP_013860680.1|2830162_2830513_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MIVKRGDVYFADLSPVVGSEQGGVRPVLILQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKRYGLERDSVILLEQIRTIDKQRLTDKITHLDEEVMEKIDDALQISLGLVEF
>NC_015634.1|WP_041819511.1|2828768_2829596_-|RsbT-co-antagonist-protein-RsbRA
MQSYLAEFIPEHKDEILDKWMKSMKEKGGAPFHFDEGVVFEKTSRDFVEVILARLTKSNHEYEKQLGEFSERIVTLGWPLTFATTGIQILGDIVYNLMMNHNPDAVFEKYREFWEIFREWTNAVQNEFVNAYTTIWEKTISLQQSALKELSAPLIPVFDKIAVLPLVGIIDSERARQIMENLLYGIVKNKSEVVLIDITGVPVVDTVVAHHLIQAANAVRLVGSRCMLVGIRAEIAHTLTNLGIKLNHITTTSTLQRGIEQALEMTGRKIVEWEG
>NC_015634.1|WP_017553290.1|2828408_2828765_-|STAS-domain-containing-protein
MRIPILKLGNCLLVSIQWELDDQTALEFQEDLLQKIYETNASGVVIDITSIDFIDSFIAKVLGDVVNMSKMLGAKVVITGIQPAVAITLIELGITMEGVMTALDLESGLEKLKQELGD
>NC_015634.1|WP_013860676.1|2828002_2828404_-|anti-sigma-regulatory-factor
MDNHSCVKILNEWDIVAARQLGRNIARELHFGAVDQARITTAISELARNIFIYAGQGEIRIEKVLQNGKKGLKVIATDKGPGIENIRKVMEDGYSTSGGLGAGLPGVRRLMDEFDIVSAPNEGTTVTAIKWIR
>NC_015634.1|WP_013860675.1|2826944_2827988_-|PP2C-family-protein-serine/threonine-phosphatase
MDFRDAMEQEYKEILSHFLQHPDEQALYQCEKFSRKLIENRISPEDMIMCHRSVLQQIEPGLSNTVQQSFDVLLEVMLAYGLVYREQQSLRTKQKELKSEIEIAAGMQQTLLKADVPEQDGIDIGVISMPAKQMSGDYYHFIEDENRRIGIAIADVIGKGIPAALCMSMIKYAIDSLPEYSHQPHIILENLNRVVEQNVDPSMFITMFYGMYDPVVHKFSYASAGHEPGFFYHAETDEFEDLIAKGLLLGIEKKSKYHEYIKDVQLGDMIVLLSDGVTECRTKEGFVSRETITGLIRKNIRKSAQEIVENVYRELERWQEFELRDDFTLLILKRTALKGGLSLARKG
>NC_015634.1|WP_013860674.1|2826578_2826908_-|anti-sigma-factor-antagonist
MDFEVDVKEKQNALNVTISGEIDAFTAPKLREAFEPYEGKAGLEVLIDLTNVSYMDSTGLGVLVGLFKSLRANGGMLTLTGLSDRLKRLFDITGLSDIMKINTEIEGGV
>NC_015634.1|WP_013860687.1|2834926_2836354_-|DEAD/DEAH-box-helicase
MTKFSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKIDHRSRNIQGIIIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYIKVQEREKFDVLSRLLDVQSPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEVTAAALKLMTKEPDKTPVHISEERPLPHKKDHSRRGKPAGSYKGSYNKGRKPRRTTTNRKPF
>NC_015634.1|WP_049783546.1|2836725_2837211_+|IS30-family-transposase
MGFKKSVRHTVIGKKTKDQALLTLTERKTRKEIILRVTAKDSLSVSEVISQLKVSYGNRFSKVFKTITADNGSEFADLGLSVEKDLTEVYFTHPYTSCERGTNERHNGLIRRFIPKGRPISSVADETITYVENWRNHLPRKVLNYRTPEECFQIELAGLAS
>NC_015634.1|WP_041819513.1|2837616_2838237_+|LysE-family-transporter
MESMFSYIFLGLSLAAPIGPVNAAQIDKGIKNGFLHSWLLGIGAMAADGLYMLLVYLGVVHLLSIGFVKSFLWFFGCFVLTYTGIESMIAANQPISGLMRNKEKLSKSFLTGFLMSLTNPLTILFWLGVYGSVLAKTAESVGPQQLLLYSLAIFLGVALWDFSMAAVSSSFGKLLTNRLILFISRLSGLSLVGFGIYFGIQAVKSL
>NC_015634.1|WP_013860690.1|2838608_2839292_+|beta-phosphoglucomutase
MAASHIQAVLFDLDGVITDTAEYHYLAWKKLADELQVPFDRHFNEALKGLSRMDSLKKILENARPEPSFSEEKLNELADRKNEYYKELIRQISPADLLPGIHNLLEDIKERGIKTALASASKNAMFVIDRLGVASFFDEIVDAARIQHGKPDPEIFLTGARKLNADPAFCIGIEDAEAGIQAIKAAGMFAVGVGTSENMNQADFLVEGTRDLDFEKIESAFLLKNKG
>NC_015634.1|WP_013860691.1|2839298_2840255_+|LacI-family-DNA-binding-transcriptional-regulator
MVTISDVAKQANVSKMTVSRVLNHPEQVRDDLKKLVYEAMEQLNYVPNYAARALVSNRTQVIKFLILEEMDTTEPYYMNLLAGIARELDQNHYSLQLVTRKSKDIGQCDGVIATGVRSQDFDTILKEFSKPVILFGQNDRGFDFIDVDNEKGVRLLTEHVISRGFKKIYFFGIDLQEPFMFARQKGYLDATEANGLPPFLCRVKNSSSAAQQEAEKILSSRKERCAFVCASDRIALGVIRAAQSLQLAIPSEVAVTGFDGVFLDRISAPHITTVRQPVVKMGEACARMLLKKIQENGKSQGHRFFEPEVVIRPSTVCE
>NC_015634.1|WP_013860692.1|2840415_2842107_+|alpha-glucosidase
MQDAWWKDVIYQVYPRSFKDSNGDGVGDIPGIIEKLDYIRDLGATAIWLNPIFESPHVDNGYDVSNYEKIDPVFGTMEDVERLIQEAKKRGLKIILDLVLNHTSDRHPWFREARKSKENPYRDYYIWHDPVEGHEPTNWASFFGGSTWAFDQQTGQYYFHLFSDKMPDLNWENKKVREEMAEIALFWLDKGVDGFRLDAVIHLAKDTRFLPVETKTEEEFALAEQYYANLPRVHDYIREFNRTIKAKHPEAFLIGETASADTKLARLYSSPDREECDCIITFNYLGFDTEAKKPGIPQNWQQGKWNLLAFKKAMSRWQNDLYGEGFNSLYWNNHDMPRALSRFGDEGKYRQKSAKMLATLMYLQWGLPILLQGEEIGMVNLKLPRLEDYEDPSIKGLATIAKKKGVAEEEILKMVQQRSKDTSRGAMQWNSDRYGGFSTYAPWLGINEDTRTVNVAAQEKDPGSVLHYYRKLIELRKSMPVFTAGSWEMLADEDPDIYAYIRKHEGSCAMIVCNTSKKPQTFTCPELTRHRWACLLNNNGDRGKAVPSKLMLSPFECFVLLQM
>NC_015634.1|WP_013860693.1|2842126_2843932_+|alpha-glycosidase
MELAGIFHQPFSADAYIYDKKTMHLKLRTKKGDIQKAVLIWGDPYLFKKKEDGEYHWESERLEMEKKAETEAHDVWFAEVCPPHRRLQYAFILTGTDGSDIFYGGRGFYPVNEDTLRVPDYYFKFPFMHETDMFKAPDWVKSTIWYQIFPERFANGNPAISPENALPWGSKDPGVDDFFGGDLEGIIGHLDYLADLGINGIYLTPIFEAPSNHKYDTFDYFTIDPHFGDKETFRKLVQEAHKRGIRIMLDAVFNHIGKNSKQWQDVLENGEKSRYKDWFHIHSFPVREGENGNIDGQDTLSFDTFAFTTSMPKLNTANPEVQQYLLDIATYWIREFDIDGWRLDVANEVDHAFWKKFHQAVVGEKPDVFILGEIWHDAWPWLLGDEFHSVMNYPFTQTIIEYFVDEKISAEKLMHSLNQQFMHYMQSNNEVLFNMLDSHDTPRILTKAGGDKQKVKLALAFTFAHTGSPCIYYGTEVGIDGAGDPLCRKCMVWDEDKQDRDMLAFMKKLIRFRKDHQQTLTYGDLVWLKTDNEKQVVSFLRKGEKCTLLFAFNRSDQEQAIPWSELDVKPDTVKDAWENKPVPNKTLVLPPMDFAILEITN
>NC_015634.1|WP_013860694.1|2844136_2845408_+|extracellular-solute-binding-protein
MKVFKKLFVLTLVLGVIMALAACGGSKKTNSSSSSDSGGKKTLTVSVEEKYADYVNSIKGDFEKKNNCTVKVVKKPMFDQLEALPLDGPAGKAPDVMLASYDRIGGLGQQGHLLKLSKKDVSAYDAKDQRQVMIDNKVYGVPFVIETLVLYYNKDLLKSPPKTFADLEKLAKDSKYNFSSESGKNTGFLVKWTDFYYSYGLLAGYGGYVFGDNGTNTKDIGLNNAGSVKAITYATHWFKDIWPKGMKDTKSSGDFVTEEFSKGKAAAVIDGPWSADTYAKAKVNYGAAPIPTLPNGNKYEAFSGGKGWVASNYTKEPKLAEKWIQYVTNSANSYKFYEKYKEVPANPAAREKAAATNDELTKAVVEQYKSAQPMPNVPEMAEVWTGMESTMFDAASGKKTPKQAADAAVKTIKDNIAQKYSNK
>NC_015634.1|WP_013860695.1|2845709_2847017_+|sugar-ABC-transporter-permease
METELNKLKDVRKAGLFSLIPGLGQFYNKQPFKGVLFLAIFILFVIQMVIAGIPAINDFITLGSVPRVDHSLFLLIKGSLQIILIAIFLAFYLLNIYDARRVAAIWNLKGTANTSAKAILKNAWDAGFPYLLTIPAYVAMTFVIIFPVLVTLFTAFTNYDFYHIPPFRLIDWVGIKNFLNIFSLSSYRATFTSVFSWTIIWTLCATTGQIVLGILTACVVNQPFIKGKKLFRIIFLLPWAVPAFITIMSFSNIFNDSIGAINAQVIPLLNHLPFTDIPAISWKTDPFWTKVALIMIQTWLGFPYIYVMVTGVLQSIPGDLYEAAIIDGANFWQKFRRITLPMILFATAPVLITQYTFNFNNFSIIYLFNNGGPGSVGAGAGTSDILISWIYKLTTGTSPQYAMAAAITLMISFIVIAVSMIAFKKTNAFGNEEMM
>NC_015634.1|WP_013860696.1|2847018_2847870_+|sugar-ABC-transporter-permease
MKALMKNQKFTRFWNRFFTYAFLILLSVIILYPLLITAASAFRESNIVSFQLDFHSHWTLDNFRQLFTQTLYPEWYKNTLIIAVATMVLQVVIVTLAGYTYSRYRFKGRKYSLVFFLIIQMVPTMAALTAFYVLANILDALDTYWFLTLLYVGGGIPMNTWLMKGYFDTVPRDLDESARIDGAGHLRVFWQIVLPLVKPMLAVQALWAFMGPFGDYLLAKFLLRTPKHLTVAVGLQQFISNPTEQKVTLFAAGAILAALPICILFFFLQKNFVSGLTSGGTKG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	57355-57409	5	0.909
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP015440	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence	64784-64838	6	0.891
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	255881-255935	7	0.873
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP010587	Bacillus megaterium Q3 plasmid p1, complete sequence	832-886	8	0.855
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP023319	Bacillus megaterium strain A plasmid p2, complete sequence	75819-75873	8	0.855
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP024037	Bacillus aryabhattai strain K13 plasmid unnamed2	10428-10482	8	0.855
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP026740	Bacillus megaterium strain YC4-R4 plasmid unnamed4	70775-70829	8	0.855
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NC_017139	Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence	1329-1383	8	0.855
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NC_020451	Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence	1971-2025	8	0.855
NC_015634_5	5.2\|2497115\|34\|NC_015634\|PILER-CR	2497115-2497148	34	MN694285	Marine virus AFVG_250M134, complete genome	3028-3061	8	0.765
NC_015634_6	6.4\|2500019\|35\|NC_015634\|CRISPRCasFinder,CRT,PILER-CR	2500019-2500053	35	MN693125	Marine virus AFVG_25M7, complete genome	41004-41038	8	0.771
NC_015634_6	6.4\|2500019\|35\|NC_015634\|CRISPRCasFinder,CRT,PILER-CR	2500019-2500053	35	MN693570	Marine virus AFVG_25M8, complete genome	14080-14114	8	0.771
NC_015634_6	6.30\|2501732\|34\|NC_015634\|CRISPRCasFinder,CRT	2501732-2501765	34	MN693401	Marine virus AFVG_25M126, complete genome	7819-7852	8	0.765
NC_015634_6	6.67\|2501734\|34\|NC_015634\|PILER-CR	2501734-2501767	34	MN693401	Marine virus AFVG_25M126, complete genome	7819-7852	8	0.765
NC_015634_6	6.4\|2500019\|35\|NC_015634\|CRISPRCasFinder,CRT,PILER-CR	2500019-2500053	35	NZ_CP043858	Arcobacter cibarius strain H743 plasmid pACIB, complete sequence	171922-171956	9	0.743
NC_015634_6	6.44\|2502646\|34\|NC_015634\|CRISPRCasFinder,CRT	2502646-2502679	34	AP012341	Staphylococcus phage phi7401PVL DNA, complete genome	942-975	9	0.735
NC_015634_6	6.44\|2502646\|34\|NC_015634\|CRISPRCasFinder,CRT	2502646-2502679	34	NC_009761	Staphylococcus phage tp310-1, complete sequence	79-112	9	0.735
NC_015634_6	6.44\|2502646\|34\|NC_015634\|CRISPRCasFinder,CRT	2502646-2502679	34	LC541428	Staphylococcus phage vB_SauS_JS02 DNA, complete genome	420-453	9	0.735
NC_015634_6	6.81\|2502648\|34\|NC_015634\|PILER-CR	2502648-2502681	34	AP012341	Staphylococcus phage phi7401PVL DNA, complete genome	942-975	9	0.735
NC_015634_6	6.81\|2502648\|34\|NC_015634\|PILER-CR	2502648-2502681	34	NC_009761	Staphylococcus phage tp310-1, complete sequence	79-112	9	0.735
NC_015634_6	6.81\|2502648\|34\|NC_015634\|PILER-CR	2502648-2502681	34	LC541428	Staphylococcus phage vB_SauS_JS02 DNA, complete genome	420-453	9	0.735
NC_015634_4	4.1\|2120005\|55\|NC_015634\|CRISPRCasFinder	2120005-2120059	55	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	483785-483839	10	0.818
NC_015634_5	5.4\|2497247\|34\|NC_015634\|PILER-CR	2497247-2497280	34	MN908694	Microbacterium phage RubyRalph, complete genome	3916-3949	10	0.706
NC_015634_6	6.29\|2501667\|35\|NC_015634\|CRISPRCasFinder,CRT	2501667-2501701	35	MT774411	CrAssphage cr273_1, complete genome	74595-74629	10	0.714
NC_015634_6	6.31\|2501796\|36\|NC_015634\|CRISPRCasFinder,CRT	2501796-2501831	36	MG198570	Lake Baikal phage Baikal-20-5m-C28, complete genome	9472-9507	10	0.722
NC_015634_6	6.39\|2502320\|36\|NC_015634\|CRISPRCasFinder,CRT	2502320-2502355	36	MG198570	Lake Baikal phage Baikal-20-5m-C28, complete genome	9472-9507	10	0.722
NC_015634_6	6.66\|2501669\|35\|NC_015634\|PILER-CR	2501669-2501703	35	MT774411	CrAssphage cr273_1, complete genome	74595-74629	10	0.714
NC_015634_6	6.68\|2501798\|36\|NC_015634\|PILER-CR	2501798-2501833	36	MG198570	Lake Baikal phage Baikal-20-5m-C28, complete genome	9472-9507	10	0.722
NC_015634_6	6.76\|2502322\|36\|NC_015634\|PILER-CR	2502322-2502357	36	MG198570	Lake Baikal phage Baikal-20-5m-C28, complete genome	9472-9507	10	0.722

1. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.909

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacaacagcttggaaggctgtagttttaccactaaactacacccgcatagtaag	Protospacer
**********************.************************** . *.*

2. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 6, identity: 0.891

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcataataat	Protospacer
***** *************** *************************** * *.

3. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 7, identity: 0.873

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatattata	Protospacer
***** *************** ***************************   * .

4. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

5. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

6. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

7. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

8. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

9. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcattttagt	Protospacer
*. ** *************** ***************************.  **

10. spacer 5.2|2497115|34|NC_015634|PILER-CR matches to MN694285 (Marine virus AFVG_250M134, complete genome) position: , mismatch: 8, identity: 0.765

attttttgcgcagccagctgtgcttctttctttt	CRISPR spacer
aagtcaatcgcagccgtctgtgcttctttctttt	Protospacer
*  *.   *******. *****************

11. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to MN693125 (Marine virus AFVG_25M7, complete genome) position: , mismatch: 8, identity: 0.771

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
attaaattataaaaataaaaataactttttgtcaa	Protospacer
 **  ******* *******.********* . **

12. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to MN693570 (Marine virus AFVG_25M8, complete genome) position: , mismatch: 8, identity: 0.771

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
attaaattataaaaataaaaataactttttgtcaa	Protospacer
 **  ******* *******.********* . **

13. spacer 6.30|2501732|34|NC_015634|CRISPRCasFinder,CRT matches to MN693401 (Marine virus AFVG_25M126, complete genome) position: , mismatch: 8, identity: 0.765

cagacgacg-cttacgattgggaccagatgcttat	CRISPR spacer
-gggctatgtcttacgtttgggaccagatgcctac	Protospacer
 .*.* *.* ****** **************.**.

14. spacer 6.67|2501734|34|NC_015634|PILER-CR matches to MN693401 (Marine virus AFVG_25M126, complete genome) position: , mismatch: 8, identity: 0.765

cagacgacg-cttacgattgggaccagatgcttat	CRISPR spacer
-gggctatgtcttacgtttgggaccagatgcctac	Protospacer
 .*.* *.* ****** **************.**.

15. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 9, identity: 0.743

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
aaccgtctataacaatagaagtaacttttttaaaa	Protospacer
  ..  .**********.************* ***

16. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to AP012341 (Staphylococcus phage phi7401PVL DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

17. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to NC_009761 (Staphylococcus phage tp310-1, complete sequence) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

18. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to LC541428 (Staphylococcus phage vB_SauS_JS02 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

19. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to AP012341 (Staphylococcus phage phi7401PVL DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

20. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to NC_009761 (Staphylococcus phage tp310-1, complete sequence) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

21. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to LC541428 (Staphylococcus phage vB_SauS_JS02 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*

22. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.818

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcatggttaa	Protospacer
*. ** *************** *************************** .  ..

23. spacer 5.4|2497247|34|NC_015634|PILER-CR matches to MN908694 (Microbacterium phage RubyRalph, complete genome) position: , mismatch: 10, identity: 0.706

gcgaactcccacgtttcatccctcatttcattat	CRISPR spacer
gcgaacgcccacgcttcatccctccgcgtatcgg	Protospacer
****** ******.**********  . .**..

24. spacer 6.29|2501667|35|NC_015634|CRISPRCasFinder,CRT matches to MT774411 (CrAssphage cr273_1, complete genome) position: , mismatch: 10, identity: 0.714

tggagagacattgatgaggcagaaggtgttgtcct	CRISPR spacer
ttagatgacattgatgaagaagaaggtgttgccag	Protospacer
* ... ***********.* ***********.*

25. spacer 6.31|2501796|36|NC_015634|CRISPRCasFinder,CRT matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

26. spacer 6.39|2502320|36|NC_015634|CRISPRCasFinder,CRT matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

27. spacer 6.66|2501669|35|NC_015634|PILER-CR matches to MT774411 (CrAssphage cr273_1, complete genome) position: , mismatch: 10, identity: 0.714

tggagagacattgatgaggcagaaggtgttgtcct	CRISPR spacer
ttagatgacattgatgaagaagaaggtgttgccag	Protospacer
* ... ***********.* ***********.*

28. spacer 6.68|2501798|36|NC_015634|PILER-CR matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

29. spacer 6.76|2502322|36|NC_015634|PILER-CR matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1864344 : 1925132

Moraxella_phage(22.22%)

tRNA,protease,coat,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013859788.1\|1864344_1865484_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.6e-82	44.3
WP_013859789.1\|1865501_1866530_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_013859790.1\|1866565_1866772_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_013859791.1\|1866768_1867767_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	3.6e-08	25.6
WP_013859792.1\|1867783_1868386_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013859793.1\|1868787_1869510_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013859794.1\|1869621_1870590_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_041819193.1\|1870589_1871828_-\|coat	SafA/ExsA family spore coat assembly protein	S6BFI4	Thermus_phage	7.9e-05	55.6
WP_013859796.1\|1872013_1872571_+	transcription repressor NadR	NA	NA	NA	NA
WP_013859797.1\|1872698_1873544_-	prephenate dehydratase	NA	NA	NA	NA
WP_013859798.1\|1873569_1874022_-	ACT domain-containing protein	NA	NA	NA	NA
WP_013859799.1\|1874069_1875365_-	GTPase ObgE	NA	NA	NA	NA
WP_013859800.1\|1875399_1875936_-	Spo0B domain-containing protein	NA	NA	NA	NA
WP_013859801.1\|1876137_1876428_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_013859802.1\|1876440_1876770_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_013859803.1\|1876782_1877091_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_013859804.1\|1877233_1878712_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_013859805.1\|1878763_1879630_-	M50 family metallopeptidase	NA	NA	NA	NA
WP_013859806.1\|1879622_1880375_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_013859807.1\|1880501_1881311_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_013859808.1\|1881303_1881996_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_041819195.1\|1882227_1882746_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_013859810.1\|1882745_1883618_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_013859811.1\|1883725_1884742_-	rod shape-determining protein	NA	NA	NA	NA
WP_035188434.1\|1884913_1885588_-	DNA repair protein RadC	NA	NA	NA	NA
WP_013858393.1\|1886008_1887232_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	3.7e-79	46.5
WP_013859813.1\|1887567_1888551_-	hypothetical protein	NA	NA	NA	NA
WP_013859814.1\|1888669_1889431_-	prepilin peptidase	NA	NA	NA	NA
WP_013859815.1\|1889538_1890243_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_013859816.1\|1890239_1891115_-	PilN domain-containing protein	NA	NA	NA	NA
WP_041819199.1\|1891115_1892114_-	pilus assembly protein PilM	NA	NA	NA	NA
WP_187287484.1\|1892216_1892624_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_013859819.1\|1892729_1893935_-	type II secretion system F family protein	NA	NA	NA	NA
WP_013859820.1\|1893921_1894974_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_013859821.1\|1894983_1896645_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_041819202.1\|1896690_1898136_-	VanW family protein	NA	NA	NA	NA
WP_013859823.1\|1898152_1898881_-	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_013859824.1\|1898907_1900554_-	hypothetical protein	NA	NA	NA	NA
WP_041819687.1\|1900681_1902295_-	hypothetical protein	NA	NA	NA	NA
WP_013859826.1\|1902294_1902804_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_013859827.1\|1902800_1903220_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_013859828.1\|1903338_1904661_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_013859829.1\|1904723_1907369_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	1.4e-163	44.0
WP_017553791.1\|1907795_1907987_+	hypothetical protein	NA	NA	NA	NA
WP_019720878.1\|1908003_1909020_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_013859832.1\|1909382_1911425_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_013859833.1\|1911735_1913025_-	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	7.4e-06	27.6
WP_013859834.1\|1913040_1914018_-	porphobilinogen synthase	NA	NA	NA	NA
WP_013859835.1\|1914229_1915018_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_013859836.1\|1915014_1915947_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_013859837.1\|1915959_1916784_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_013859838.1\|1916799_1918131_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_013859839.1\|1918317_1918812_+	hypothetical protein	NA	NA	NA	NA
WP_013859840.1\|1918988_1919573_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_041819211.1\|1919569_1921894_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.7e-181	44.0
WP_013859842.1\|1921934_1923572_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	1.5e-14	36.4
WP_013859843.1\|1923863_1925132_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.9e-149	67.2

DBSCAN-SWA_2

2549902 : 2568419

Streptococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013858393.1\|2549902_2551126_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	3.7e-79	46.5
WP_013860438.1\|2551751_2552495_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_013860439.1\|2552825_2554163_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_013858128.1\|2554730_2556041_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_041819447.1\|2556208_2557510_+\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	1.3e-111	49.3
WP_049783569.1\|2557854_2559156_+	DNA (cytosine-5-)-methyltransferase	F2Y148	Organic_Lake_phycodnavirus	1.4e-76	45.3
WP_013860442.1\|2559336_2560104_-	hypothetical protein	NA	NA	NA	NA
WP_041819449.1\|2560974_2562027_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_013860445.1\|2562147_2563563_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_013860446.1\|2563966_2565301_+	amino acid permease	NA	NA	NA	NA
WP_013860447.1\|2565808_2566765_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_013860448.1\|2567060_2568419_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2740223 : 2748539

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041819485.1\|2740223_2740817_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.1e-28	39.2
WP_013860597.1\|2740809_2741856_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	4.5e-62	44.9
WP_013860598.1\|2741875_2743300_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-48	33.9
WP_013860599.1\|2743284_2745534_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.0e-167	44.1
WP_017552973.1\|2745517_2746201_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013860601.1\|2746197_2746452_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013860602.1\|2746444_2747155_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SS43	Cyanophage	3.3e-48	43.7
WP_013860603.1\|2747243_2748539_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	32.4

DBSCAN-SWA_4

2776802 : 2837211

Bacillus_virus(17.65%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013860627.1\|2776802_2778140_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_041819500.1\|2778442_2778808_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013860630.1\|2779391_2780033_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013860631.1\|2780225_2780744_-	folate family ECF transporter S component	NA	NA	NA	NA
WP_013860632.1\|2781136_2781361_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_013860633.1\|2781374_2782436_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_013860634.1\|2782806_2783925_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	8.3e-78	47.5
WP_013860635.1\|2784012_2784153_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_013860636.1\|2784324_2785224_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	9.6e-53	43.2
WP_013860637.1\|2785453_2785669_+	DNA-binding protein	NA	NA	NA	NA
WP_013860638.1\|2785734_2785926_-	YbxH family protein	NA	NA	NA	NA
WP_013860642.1\|2788856_2789558_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.3e-09	28.7
WP_013860643.1\|2789701_2790262_+	hypothetical protein	NA	NA	NA	NA
WP_013860647.1\|2791570_2793118_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_049783545.1\|2793383_2794043_-	MFS transporter	NA	NA	NA	NA
WP_029142769.1\|2794530_2794770_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014096839.1\|2794753_2794957_+	hypothetical protein	NA	NA	NA	NA
WP_041819503.1\|2794986_2795184_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_013860650.1\|2795307_2796861_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.5e-18	28.6
WP_013860652.1\|2797132_2797963_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.6e-76	55.7
WP_013860653.1\|2798033_2799500_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.3e-118	48.4
WP_041819506.1\|2799528_2800083_-	cysteine hydrolase	G3MA16	Bacillus_virus	9.5e-35	42.5
WP_013860654.1\|2800176_2801241_-	dipeptide epimerase	NA	NA	NA	NA
WP_013860655.1\|2801452_2803126_+	membrane protein	NA	NA	NA	NA
WP_013860656.1\|2803156_2804161_+	glycosyltransferase family 2 protein	A0A2H5BFL1	Salmonella_phage	3.5e-51	38.1
WP_013860657.1\|2804192_2804582_+	GtrA family protein	NA	NA	NA	NA
WP_013860658.1\|2804979_2806608_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.1e-158	59.5
WP_017552449.1\|2806661_2806946_-	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.3e-19	52.7
WP_019720792.1\|2807315_2808044_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013860661.1\|2808040_2808238_+	YdiK family protein	NA	NA	NA	NA
WP_013860662.1\|2808275_2809040_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_019720794.1\|2809190_2809874_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_013860664.1\|2810187_2812107_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	8.4e-54	28.6
WP_013860665.1\|2812412_2813429_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-68	42.8
WP_013860666.1\|2813429_2813885_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_013860667.1\|2813887_2814589_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_013860668.1\|2814585_2815041_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_013860669.1\|2821491_2821983_-	SprT family protein	U5J9G1	Bacillus_phage	6.3e-06	27.3
WP_100181618.1\|2822131_2822248_+	cortex morphogenetic protein CmpA	NA	NA	NA	NA
WP_187287488.1\|2822270_2824415_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_029142784.1\|2824748_2825342_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_013860672.1\|2825347_2826127_-	RNA polymerase sigma factor SigB	A0A0Y0AU18	Bacillus_phage	3.3e-25	31.3
WP_013860673.1\|2826104_2826575_-	anti-sigma B factor RsbW	NA	NA	NA	NA
WP_013860674.1\|2826578_2826908_-	anti-sigma factor antagonist	NA	NA	NA	NA
WP_013860675.1\|2826944_2827988_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA
WP_013860676.1\|2828002_2828404_-	anti-sigma regulatory factor	NA	NA	NA	NA
WP_017553290.1\|2828408_2828765_-	STAS domain-containing protein	NA	NA	NA	NA
WP_041819511.1\|2828768_2829596_-	RsbT co-antagonist protein RsbRA	NA	NA	NA	NA
WP_013860680.1\|2830162_2830513_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A2P0ZKX3	Lactobacillus_phage	1.0e-13	36.0
WP_014096808.1\|2830517_2830796_-	hypothetical protein	NA	NA	NA	NA
WP_013860682.1\|2830948_2832100_-	alanine racemase	NA	NA	NA	NA
WP_013860683.1\|2832301_2833318_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_013860684.1\|2833458_2833809_-	holo-ACP synthase	NA	NA	NA	NA
WP_013860685.1\|2834090_2834690_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013860687.1\|2834926_2836354_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.3e-63	37.9
WP_049783546.1\|2836725_2837211_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.1e-29	46.5

DBSCAN-SWA_5

2939446 : 3003520

Bacillus_phage(16.67%)

transposase,tRNA,bacteriocin,coat,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041819545.1\|2939446_2939890_+\|coat	spore coat protein GerQ	NA	NA	NA	NA
WP_041819547.1\|2939936_2940302_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_013860787.1\|2940465_2940723_-	YwdI family protein	NA	NA	NA	NA
WP_013860789.1\|2941067_2941754_-	uracil-DNA glycosylase	S4VZ65	Pandoravirus	3.4e-50	45.5
WP_013860790.1\|2941901_2942249_+	general stress protein	NA	NA	NA	NA
WP_017550349.1\|2942373_2942646_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017550351.1\|2943125_2943353_+\|bacteriocin	circular bacteriocin, circularin A/uberolysin family	NA	NA	NA	NA
WP_013860791.1\|2943427_2945053_+	hypothetical protein	NA	NA	NA	NA
WP_017550353.1\|2945098_2945617_+	stage II sporulation protein M	NA	NA	NA	NA
WP_080738159.1\|2945613_2946300_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.3e-13	28.8
WP_041819549.1\|2946855_2947404_-	ABC-2 transporter permease	NA	NA	NA	NA
WP_013860795.1\|2947488_2949009_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013860796.1\|2949260_2950079_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
WP_013860797.1\|2950198_2950546_+	YojF family protein	NA	NA	NA	NA
WP_013860798.1\|2950559_2951243_+	bacillithiol biosynthesis deacetylase BshB2	NA	NA	NA	NA
WP_013860799.1\|2951348_2952215_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_041819551.1\|2952207_2954394_-	DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	2.8e-82	36.6
WP_013860801.1\|2954496_2955768_-	alkaline phosphatase	NA	NA	NA	NA
WP_041819782.1\|2955894_2956743_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_041819553.1\|2956996_2957863_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_013860804.1\|2958027_2958204_-	hypothetical protein	NA	NA	NA	NA
WP_041819555.1\|2958196_2959465_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_013860806.1\|2959448_2960126_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.2e-28	32.9
WP_013860807.1\|2960270_2960708_+	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_041819784.1\|2960721_2961183_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_013860809.1\|2961316_2961463_-	hypothetical protein	NA	NA	NA	NA
WP_014096691.1\|2961531_2962215_-	LrgB family protein	NA	NA	NA	NA
WP_013860811.1\|2962204_2962582_-\|holin	CidA/LrgA family holin-like protein	NA	NA	NA	NA
WP_013860812.1\|2962684_2963620_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013860813.1\|2963795_2965643_-	asparagine synthase (glutamine-hydrolyzing)	F2Y1H0	Organic_Lake_phycodnavirus	9.6e-31	27.0
WP_148256265.1\|2965649_2965856_-	hypothetical protein	NA	NA	NA	NA
WP_041819559.1\|2965833_2966847_+	DUF1646 family protein	NA	NA	NA	NA
WP_041819563.1\|2967403_2967850_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_013860816.1\|2967925_2968675_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_013860817.1\|2968808_2969882_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_013860818.1\|2970189_2971992_-	carbon starvation protein A	NA	NA	NA	NA
WP_013860819.1\|2972445_2973288_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041819565.1\|2973347_2974010_-	ABC transporter permease	NA	NA	NA	NA
WP_041819787.1\|2973999_2975040_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.8e-34	39.4
WP_013860822.1\|2975302_2976082_-	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	4.6e-11	25.7
WP_013860823.1\|2976143_2976716_-	hypothetical protein	NA	NA	NA	NA
WP_013860824.1\|2976727_2977906_-	ParM/StbA family protein	A0A1B1P792	Bacillus_phage	2.5e-56	35.6
WP_013860825.1\|2978323_2979673_+	MATE family efflux transporter	NA	NA	NA	NA
WP_013860826.1\|2979880_2980675_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_041819569.1\|2980737_2981970_+	peptidase T	NA	NA	NA	NA
WP_013860828.1\|2982246_2983749_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_013860829.1\|2984030_2984324_+	hypothetical protein	NA	NA	NA	NA
WP_013860831.1\|2984738_2986019_+	uracil permease	Q9KX94	Enterobacteria_phage	7.8e-64	37.4
WP_013860832.1\|2986294_2988019_-	ubiquinone-dependent pyruvate dehydrogenase	G8DDL3	Micromonas_pusilla_virus	3.2e-36	23.4
WP_187287465.1\|2988445_2989150_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_029143023.1\|2991653_2992748_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-27	35.9
WP_013860837.1\|2992744_2993683_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_013860838.1\|2993679_2994498_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_013860839.1\|2994761_2996105_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013860840.1\|2996124_2996922_+	glycerophosphodiester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	2.3e-05	43.9
WP_013860842.1\|3000282_3001746_+\|transposase	transposase	NA	NA	NA	NA
WP_041819571.1\|3002215_3003520_-\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3054138 : 3062208

Staphylococcus_phage(66.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013860884.1\|3054138_3054639_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	6.3e-54	66.9
WP_013860885.1\|3054700_3054988_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_013860886.1\|3055245_3055716_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.8e-41	55.9
WP_013860887.1\|3055728_3056922_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.3e-112	54.3
WP_013860888.1\|3056939_3057587_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.7e-38	43.8
WP_148256274.1\|3057567_3058680_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.8e-55	37.8
WP_013860890.1\|3059009_3060110_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_013860891.1\|3060269_3060470_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_041819580.1\|3060459_3061371_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_013860893.1\|3061584_3062208_+\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	2.7e-22	39.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015634

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection