CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015587	Hydrogenobaculum sp. SHO, complete sequence	10 crisprs	Cas14b_CAS-V-F,cas3,cas6,cas4,cas1,csm3gr7,DEDDh,DinG,csa3,cas7,cas5,cas14j,cas8b2,cas2,TnpB_regular.1	3	5	3	0

1. NC_015587

CRISPR-Cas detection and classification

Crispr_ID: NC_015587_1

• CRISPR_ID: NC_015587_1
• CRISPR_location: 199538-199636
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015587_1

Consensus_repeat	Method
AAATGCGGACGTTACCGCTCTATT	CRISPRCasFinder

spacers of NC_015587_1

>1.1|199562|51|NC_015587|CRISPRCasFinder
TACTTTTTAGCTTTAGCTATTTTGCCTGCTCTTTAGTCAATCTACGAAGTA

CRISPR arrays and Neighbor proteins around NC_015587_1

CRISPR arrays

The CRISPR arrays of NC_015587_1

>merge|NC_015587|1|199538-199636|CRISPRCasFinder
AAATGCGGACGTTACCGCTCTATTTACTTTTTAGCTTTAGCTATTTTGCCTGCTCTTTAGTCAATCTACGAAGTAAAATGCGGGCGTTACCGCTCTATT

>NC_015587|1|1|199538-199636|CRISPRCasFinder
AAATGCGGACGTTACCGCTCTATT	TACTTTTTAGCTTTAGCTATTTTGCCTGCTCTTTAGTCAATCTACGAAGTA
AAATGCGGGCGTTACCGCTCTATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015418864.1|198969_199197_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418867.1|200511_200706_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418874.1|205229_206141_+|ketoacyl-ACP-synthase-III	unknown	unknown	gnl|CDD|236475
NC_015587.1|WP_015418856.1|191105_192383_+|NADH-quinone-oxidoreductase-subunit-F	unknown	unknown	gnl|CDD|224806
NC_015587.1|WP_015418868.1|200751_201330_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418857.1|192399_194064_+|dihydroxy-acid-dehydratase	unknown	unknown	gnl|CDD|234861
NC_015587.1|WP_015418873.1|204210_205230_+|phosphate-acyltransferase-PlsX	unknown	unknown	gnl|CDD|235414
NC_015587.1|WP_015418875.1|206142_206556_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418872.1|204016_204199_+|50S-ribosomal-protein-L32	unknown	unknown	gnl|CDD|237038
NC_015587.1|WP_015418859.1|195220_195676_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418862.1|197898_198411_-|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl|CDD|100051
NC_015587.1|WP_015418861.1|196404_197562_-|chorismate-synthase	unknown	unknown	gnl|CDD|235438
NC_015587.1|WP_015418858.1|194073_195204_+|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl|CDD|234642
NC_015587.1|WP_015418863.1|198436_198883_-|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl|CDD|238431
NC_015587.1|WP_015418855.1|190666_191131_+|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl|CDD|224817
NC_015587.1|WP_015418866.1|199879_200500_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015418870.1|202553_203519_+|cysteine-synthase-B	unknown	unknown	gnl|CDD|130208
NC_015587.1|WP_015418860.1|195751_196405_-|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|273439
NC_015587.1|WP_015418871.1|203520_204036_+|DUF177-domain-containing-protein	unknown	unknown	gnl|CDD|376863
NC_015587.1|WP_015418869.1|201624_202557_+|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl|CDD|274028

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015418874.1|205229_206141_+|ketoacyl-ACP-synthase-III	gnl|CDD|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	4.03134e-170
NC_015587.1|WP_015418856.1|191105_192383_+|NADH-quinone-oxidoreductase-subunit-F	gnl|CDD|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_015587.1|WP_015418869.1|201624_202557_+|ADP-glyceromanno-heptose-6-epimerase	gnl|CDD|274028	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.56885e-122
NC_015587.1|WP_015418873.1|204210_205230_+|phosphate-acyltransferase-PlsX	gnl|CDD|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	2.3669e-161
NC_015587.1|WP_015418872.1|204016_204199_+|50S-ribosomal-protein-L32	gnl|CDD|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	4.20652e-25
NC_015587.1|WP_015418857.1|192399_194064_+|dihydroxy-acid-dehydratase	gnl|CDD|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_015587.1|WP_015418862.1|197898_198411_-|gamma-carbonic-anhydrase-family-protein	gnl|CDD|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	4.06167e-84
NC_015587.1|WP_015418861.1|196404_197562_-|chorismate-synthase	gnl|CDD|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NC_015587.1|WP_015418858.1|194073_195204_+|tRNA-guanosine(34)-transglycosylase-Tgt	gnl|CDD|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_015587.1|WP_015418863.1|198436_198883_-|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein	gnl|CDD|238431	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	1.85149e-11
NC_015587.1|WP_015418855.1|190666_191131_+|NADH-quinone-oxidoreductase-subunit-NuoE	gnl|CDD|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	1.32134e-53
NC_015587.1|WP_015418870.1|202553_203519_+|cysteine-synthase-B	gnl|CDD|130208	TIGR01138, Cysteine_synthase_B, cysteine synthase B. CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family].	1.28163e-148
NC_015587.1|WP_015418860.1|195751_196405_-|type-I-3-dehydroquinate-dehydratase	gnl|CDD|273439	TIGR01093, 3-dehydroquinate_dehydratase, 3-dehydroquinate dehydratase, type I. This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088. [Amino acid biosynthesis, Aromatic amino acid family].	5.26807e-57
NC_015587.1|WP_015418871.1|203520_204036_+|DUF177-domain-containing-protein	gnl|CDD|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	2.75376e-08

Protein sequences

>NC_015587.1|WP_015418864.1|198969_199197_-|hypothetical-protein
MDIWHSIMNFIHMLEGTPYQGHTHCYNCMFQTGQIPNVFKMYAQRLVETVVIGAVLIFIFSKIVKHEEDRINKED
>NC_015587.1|WP_015418863.1|198436_198883_-|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein
MKTLKTVERFTLPEGFESFENHVAIPIKAPKENSPIKISPLFGEVKFFAFYDKNSKTIKTLRNPVERGGMVIRFLLSLGVRELIVLHMGQGAYNLAIANGMKVYFAEDDKISFDELLRKYESNELTLVTPDKFELLIRFSCSNHHHHH
>NC_015587.1|WP_015418862.1|197898_198411_-|gamma-carbonic-anhydrase-family-protein
MLKAYKNFYPKIGSGVYIADNAFVIGDVELGDDVSVWFGTVIRGDVNYIKIGDRTNIQDNSVIHVTHNTHPTIIGHDVTIGHGAIIHGCTIKNFVLVGMGATIMDGATIEDFVLVGARALITPNKHIPSGVLVAGSPAKIVRDLKPEEIELIKESASNYVRYKNNYLANP
>NC_015587.1|WP_015418861.1|196404_197562_-|chorismate-synthase
MGLRFLSAGESHGQALISILEGLPSNLEVDIDFINNELRRRQGGYGRGGRMAIEQDKANILSGVRFGKTTGAPIAIEIKNKDWENWQNKMAPFGQKPEDFKDFTRPRPGHADLIGGIKYNQKDLRNVLERASARETASRVAIGAFCKLLLKALNIEVYSYVLSVGKISATPPSDDPSINAKEAEKSVVRFVDPAKDQEVIEYIDKAKEQGESLGGIFEVVAVNVPPGLGSYIQWDKRIDGDIAKAMMSIQAIKGVEIGLGFKGATLFGSKVMDEIGYENGYTRYSNNLGGTEGGMTNGMPIVVRAAMKPIPTLMNPLRSVDIISKEPIKASKERSDVTAIAAASVVGEAMLSFVIAHHILEKFGADSMEELIINYNQYLEYVRSF
>NC_015587.1|WP_015418860.1|195751_196405_-|type-I-3-dehydroquinate-dehydratase
MKIAIPITDENFDEVLVKARNADILEFRVDYFSNKDISFVSGLLKKAKENGFETILTIRSEKEGGAYVENRVEMFEKLMPLSDYTDIELSSTDIITYISRLSKEYNKKLIVSYHNFEMTPANFVIKETIREALRYGDIPKIALKANSYEDVARLMCSASDIKTPKILISMGEFGKISRIAGFIFGSFISYAYLEKPNAPGQLSLEEMLKLKEMFYLR
>NC_015587.1|WP_015418859.1|195220_195676_+|hypothetical-protein
MNLKSWSYYIQLRAYDESGNVKEDSALYIVGLPITDDVLKAVEMECYAQNYIPQEFAIAYGKAYAIGTDIDIKNLSDYNLNAYDKATDLYIFNENVNFHEGLEQVFRILLEQSFKDFEPSKIEPVIDVGIPPIETLREVFDSVVKHFLPPM
>NC_015587.1|WP_015418858.1|194073_195204_+|tRNA-guanosine(34)-transglycosylase-Tgt
MFKIEKTDGLARAGVLSTSHGDILTPVFMPVGTKGTVKAMTHRLLEELGTQIILGNTYHLYLRPGPELIEKFGGLHKFINWNKPILTDSGGFQVFSLSKKNSSNVKITDDGVYFKDHLQGDKHLFSPERVIEIQEIFGSDIMMPIDECISLPASYEYTKEALYRTIRWLERSKKAKKRKDQMLFGIVQGGEYKDLRKLSARLTVEFDMDGYSIGGLSVGESKDIMYSMTYYVVEELPFDKPHYLMGVGKPEDILEAISLGVDMFDCVIPTRNARTGLLYTSKGELVLRHERYKEDPRPVDEECECYTCKNFSRAYLRHLFMMEEISSYILNTIHNLHFFLNLTKKAREAIIQGRFLDFKNEMLEKFNMKNHSINAN
>NC_015587.1|WP_015418857.1|192399_194064_+|dihydroxy-acid-dehydratase
MRSDIIQKGYDKAPHRSLLRACGFKDEDFGKPIIGVANSYIDIVPGHVHLREFVEPIKEEIRKAGAIPVEFNTIGVDDGIAMGHYGMHYSLPSRELIADAIETVVEAHQLDGLICIPNCDKIVPGMLMGALRVNVPTVFISGGPMAAGKIGDKKVDLISVFEGVGKLNKGEITEKDLLVIEQNACPSCGSCSGLFTANSMNCLTEVLGLGLPGNGTILAIDPRREMLARAAARQIVELVKIDLKPRDIVTKASFDNAFRVDIAMGGSSNTVLHLLAIAREAGIEYKMEDIDKISRETPTLCKISPSSDYHMEDLDRAGGISAIMKELLRNGLLDGKQRTVTTKTIEEIVKDVEIMDENVIRRIDNAYSKDGGLAILFGNLAPKGSVVKTAGVAKEMLQFKGKAICFDSEEEAIDGIRGGKVKPGHVVVIRYEGPKGGPGMREMLSPTSTIMGMGLGSSVALITDGRFSGGTRGACVGHVSPEAAAGGPIGIVQDGDEILIDIPNRKLELLISQEEFDARLKAFKPKEKPIKSSWLKRYRKLVKDASEGAILSAD
>NC_015587.1|WP_015418856.1|191105_192383_+|NADH-quinone-oxidoreductase-subunit-F
MKYLPNIANIHAETELNLLLKRAKRKRTADIKEYLKDGGYLALEKALSMKPEDIVEEVDNSNLRGRGGAGFPTGRKWKFCLQNKAPRYLVCNADESEPGTFKDRLILERDPHLLLEGMIISAYALGVNRAYIYIRGEYPAGYYILRNAIEEAKKEGLLGKNILNSGFDLEILVSRGAGAYICGEETALLNSIEGKRGHPRLKPPFPVQVGLWGRPTVVNNVETLSNIPIIINLGSEGYKEIGPMDYPGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTIRNVPIKAVFSGALDCLSVNELDTPMDYSQFGFGGTGTVIVLTEEDDIVEACYKIAEFYEHETCGFCTPCRIGCHEQAYLLEKIVKDEATPQTWEGLRFVTKYIQPTSVCGLGAVASRLIKQAMEKFPEDFAKKEQMSFVNI
>NC_015587.1|WP_015418855.1|190666_191131_+|NADH-quinone-oxidoreductase-subunit-NuoE
MLTQEIKEAIEGHIKYFGSKEEALLLSLHSIQEHLGHIPEEALEELSEILDMPLHHIKGVVAFYEMFDTGEKAKHRIYVCNSIVCYLLKSHRVFSAVKELLGIEPGQVTRDGMFKLVEVQCLGACSEAPVFMVDNDIYRYESKEKLHEILAKYS
>NC_015587.1|WP_015418866.1|199879_200500_-|hypothetical-protein
MKEKAILEKIFVSQDNQDIRSKIKALIGNDIPSIIEAWANYIGYQTLYNNDIIELLLKANILDDEFAKFLQSLQAIKSTKNRMSKQEFLSLFKELISNTGYMYSALPYIEDIITYLGQALYLIMLSGLDVKPFSFVLLKAKHQQTLYKNPQNQSESIKQIEYTAHAKIKSLKVKQTIKPPPPEQPAQQQAQQTQQIPPPPQTGSYL
>NC_015587.1|WP_015418867.1|200511_200706_-|hypothetical-protein
MDFKIISLLIEDIPKFVKLIEDVEVLVENTKDPHQKNLLLEIVDILEEIAPRLQSVLKDLEEIG
>NC_015587.1|WP_015418868.1|200751_201330_-|hypothetical-protein
MLKTFVMPHVAPITETFDLERSKSAVQNLIKLGGYELLSRFVAVVDMGSSSSLPQSADNYYFVFGDVINGQALIIADALKFWTKELRVSTHKKTSIKSSKTAEEIAILEDILKELKDQNQEATIQNIINSLEKRKKTSSKTPTLGTVLSNSGKQDIVSVGRCVIRKLESEIRSKKDRKTGQVVLYRSCDQLT
>NC_015587.1|WP_015418869.1|201624_202557_+|ADP-glyceromanno-heptose-6-epimerase
MRRFLITGGAGFIGSRIALRLQELYPKAYILVVDNFFSGHFKNLYGFKGDVIEGAIEDKDLWEYLKKEYASFEAVFHNGAITDTTILDQKLMMDVNTNSMKYIIDACIKWDAKLIYASSAGVYGNTEAPMKEDRGLIPENVYGFSKLMADNMVKNKMEEYPSFRVVGFRYFNVYGMGEQYKGKTASMIYQLAMQMKSGKNPRLFKYGEQKRDFVYIEDVLQANIKALERYDASGIFNVGYGKARSFNDIVEVLNRLMGTNYEIEYFDCPYEFYQNYTEADISAIKEKLGYEPKYDLESGIEHYLKSLKLI
>NC_015587.1|WP_015418870.1|202553_203519_+|cysteine-synthase-B
MNLKGIFWVLGEHDEPYLKPRESSLELVGNTPLVRIKKVLEAFDINPNVKIYAKLESTNPGGSVKDRAALSMFLNAIKKGIIQKDKAVIDATSGNTGIALAMVGASLGIKVELAMPSNVSEERKKILEAYGAITHYTDPLEGTDGAILYVRDLVKKYPDRYVYLDQYNNQANWQAHFYSTGIEIYNQTKGQITHFVAGIGTGGTIMGTGRRLKVYNPNIEVIGIQPAYPFHGIEGLKHIESSIKPGIFDETFLDRTIFVDTEEAYELTRRLAKEEGLFVGQSSGAALAGAIKLAKELESGLIVTVFPDGGDRYLSTRVWGK
>NC_015587.1|WP_015418871.1|203520_204036_+|DUF177-domain-containing-protein
MEILNLVDIFKSQKTYSFEEDIKKDFWKDFLPEDIESVEANVKINISPKGYMRYELSLKLEAKVRAFCSVCLKEFGFDIVLDEVFELLDKGLETYSKSHMLKEEEFYTYYIDQEEFDPSEVVLDALIGAIPIKFLCEESCSLPSKVEQGNKSFAILKELLTKEEKNGGTKA
>NC_015587.1|WP_015418872.1|204016_204199_+|50S-ribosomal-protein-L32
MAVPKRRTSRWRRNQRRAQAFFAKLKSFNVVKCPNCGEFAMPHRACPYCGYYRDKQVLEV
>NC_015587.1|WP_015418873.1|204210_205230_+|phosphate-acyltransferase-PlsX
MESFRIALDCMGGDYAPDEIVKGGILALDELNCEVLFVGKEELIRQVLKKYKLREDIKIINSEDSIEMNSSPSSVLKRKNSSLYIAGKLLKENQADALVSAGNTGAVLAIGKFVVGSSEFLERPAIAVALPNKLGKKTVLVDVGANVDSRPRHLLDFAIIGHTYAEEILGVKNPTIGILSIGEEEGKGNELVKETFPLLKETKLNFKGNAEGRDIYNGTFDVIVCDGFVGNIVLKASESLGMALIDMIKEEVMKRKISKLGALLMKPAINAFKRKVDFEEYGGTPLLGAKKPVIITHGRANAKAIKNAIKIARAFLSHHFNERMKENFVKYIEPVLKEQ
>NC_015587.1|WP_015418874.1|205229_206141_+|ketoacyl-ACP-synthase-III
MGVSIKSIGIYVPSHVVTNEDLEKNIDTSDEWITTRTGIKRRHIAKDESIYDMAVKAGKMALEKAGLEEVDLIIVATLSPEMLFPAVACVVQQHIKSRFAFDISAACSGFLYGLDIAKSYIESSNVNSILLIGAEKLSSIVDWTDRSTCVLFGDGAGAAVITKGEGDILSSVMFSDGKYKDLLYAEKCGFLKMNGKEVFKYAVRNMEAACRMAIEKAGVSIDEISLVIPHQANIRIINSLAQKLGVPSSKVYVNIQEYANTSAASIPIAMYEAFEKGLLKRKDKILLTAMGGGLTWGASVLEF
>NC_015587.1|WP_015418875.1|206142_206556_+|hypothetical-protein
MGKVIRFNSDDDSEKIEQEQLPIDQQPVEMPQFLQELREYILGYYPNTISDILGFSGFIKNDNPYVFVGYVAWQDKKGSYYTTPLIAMFRNQDKRFSFLNAKNHYFDPTVLKTDIENLGIKIDEIYKHLDEELKKLT

Crispr_ID: NC_015587_2

• CRISPR_ID: NC_015587_2
• CRISPR_location: 340588-340887
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: cas4,cas6,csm3gr7,DEDDh

Consensus repeat of NC_015587_2

Consensus_repeat	Method
ANGTTTTNTNTGTNCCTATAGGGGATTGAAAC	CRT
GTTTTTTGTGTACCTATAGGGGATTGAAAC	CRISPRCasFinder
GGTTTTTTGTGTACCTATAGGGGATTGAAACG	PILER-CR

spacers of NC_015587_2

>2.1|340620|35|NC_015587|CRT
AAGATTCTAACCCTGGGAACATCTCACTAAGTTTT
>2.2|340687|34|NC_015587|CRT
CGCTAGTGACAACAAACTGTAGTGCATGACCAAT
>2.3|340753|35|NC_015587|CRT
GCACGCACAAAAACTGCACAAAAACTGCTAAAAAA
>2.4|340820|35|NC_015587|CRT
TATAGTGAATAACATCATTTTTACATTTTGCAATG
>2.5|340620|37|NC_015587|CRISPRCasFinder
AAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAG
>2.6|340687|36|NC_015587|CRISPRCasFinder
CGCTAGTGACAACAAACTGTAGTGCATGACCAATAA
>2.7|340753|37|NC_015587|CRISPRCasFinder
GCACGCACAAAAACTGCACAAAAACTGCTAAAAAATG
>2.8|340820|37|NC_015587|CRISPRCasFinder
TATAGTGAATAACATCATTTTTACATTTTGCAATGAG
>2.9|340755|35|NC_015587|PILER-CR
CACGCACAAAAACTGCACAAAAACTGCTAAAAAAT
>2.10|340822|35|NC_015587|PILER-CR
ATAGTGAATAACATCATTTTTACATTTTGCAATGA

CRISPR arrays and Neighbor proteins around NC_015587_2

CRISPR arrays

The CRISPR arrays of NC_015587_2

>merge|NC_015587|2|340588-340887|CRT,CRISPRCasFinder,PILER-CR
ATGTTTTGTTTGTGCCTATAGGGGATTGAAACAAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAGGTTTTGTTTGTGCCTATAGGGGATTGAAACCGCTAGTGACAACAAACTGTAGTGCATGACCAATAAGTTTTTTGTGTACCTATAGGGGATTGAAACGCACGCACAAAAACTGCACAAAAACTGCTAAAAAATGGTTTTTTGTGTACCTATAGGGGATTGAAACTATAGTGAATAACATCATTTTTACATTTTGCAATGAGGTTTTTTGTGTACCTATAGGGGATTGAAAAG

>NC_015587|2|1|340588-340886|CRT
ATGTTTTGTTTGTGCCTATAGGGGATTGAAAC	AAGATTCTAACCCTGGGAACATCTCACTAAGTTTT
AGGTTTTGTTTGTGCCTATAGGGGATTGAAAC	CGCTAGTGACAACAAACTGTAGTGCATGACCAAT
AAGTTTTTTGTGTACCTATAGGGGATTGAAAC	GCACGCACAAAAACTGCACAAAAACTGCTAAAAAA
TGGTTTTTTGTGTACCTATAGGGGATTGAAAC	TATAGTGAATAACATCATTTTTACATTTTGCAATG
AGGTTTTTTGTGTACCTATAGGGGATTGAAAA

>NC_015587|2|2|340590-340886|CRISPRCasFinder
GTTTTGTTTGTGCCTATAGGGGATTGAAAC	AAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAG
GTTTTGTTTGTGCCTATAGGGGATTGAAAC	CGCTAGTGACAACAAACTGTAGTGCATGACCAATAA
GTTTTTTGTGTACCTATAGGGGATTGAAAC	GCACGCACAAAAACTGCACAAAAACTGCTAAAAAATG
GTTTTTTGTGTACCTATAGGGGATTGAAAC	TATAGTGAATAACATCATTTTTACATTTTGCAATGAG
GTTTTTTGTGTACCTATAGGGGATTGAAAA

>NC_015587|2|1|340723-340887|PILER-CR
GTTTTTTGTGTACCTATAGGGGATTGAAACGC	ACGCACAAAAACTGCACAAAAACTGCTAAAAAATG
GTTTTTTGTGTACCTATAGGGGATTGAAACTA	TAGTGAATAACATCATTTTTACATTTTGCAATGAG
GTTTTTTGTGTACCTATAGGGGATTGAAAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein	unknown	unknown	gnl|CDD|225098
NC_015587.1|WP_015419035.1|350236_351436_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419019.1|331673_332024_+|iron-sulfur-cluster-assembly-scaffold-protein	unknown	unknown	gnl|CDD|143480
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|185680
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_015587.1|WP_015419024.1|335924_336614_-|peptidase	unknown	unknown	gnl|CDD|349948
NC_015587.1|WP_015419022.1|333350_334958_+|arginine--tRNA-ligase	unknown	unknown	gnl|CDD|234964
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl|CDD|176648
NC_015587.1|WP_015419021.1|332924_333341_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein	unknown	unknown	gnl|CDD|312718
NC_015587.1|WP_015419020.1|332001_332928_+|DUF523-and-DUF1722-domain-containing-protein	unknown	unknown	gnl|CDD|377367
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl|CDD|224499
NC_015587.1|WP_015419023.1|335030_335762_+|substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|270237
NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein	unknown	unknown	gnl|CDD|313108
NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein	unknown	unknown	gnl|CDD|223965
NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein	unknown	unknown	gnl|CDD|376655
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|273848
NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein	unknown	unknown	gnl|CDD|350341

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	4.6e-114	377.4	9.1
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	6.2e-16	53.9	0.5
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	5.6e-22	73.5	5.2
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.5e-41	137.0	0.2
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	1.4e-48	159.8	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein	gnl|CDD|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	1.88899e-99
NC_015587.1|WP_015419019.1|331673_332024_+|iron-sulfur-cluster-assembly-scaffold-protein	gnl|CDD|143480	cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.	0.00627606
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.66404e-48
NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|185680	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.	3.3435e-64
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.73205e-103
NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	6.46467e-06
NC_015587.1|WP_015419022.1|333350_334958_+|arginine--tRNA-ligase	gnl|CDD|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	2.18286e-168
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	gnl|CDD|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.90339e-55
NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein	gnl|CDD|312718	pfam09312, SurA_N, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	9.06613e-12
NC_015587.1|WP_015419020.1|332001_332928_+|DUF523-and-DUF1722-domain-containing-protein	gnl|CDD|377367	pfam04463, DUF523, Protein of unknown function (DUF523). Family of uncharacterized bacterial proteins.	7.19578e-46
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	gnl|CDD|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.58344e-08
NC_015587.1|WP_015419023.1|335030_335762_+|substrate-binding-domain-containing-protein	gnl|CDD|270237	cd13519, PBP2_PEB3_AcfC, Ligand-binding domain of a glycoprotein adhesion and an accessory colonization factor, a member of the type 2 periplasmic binding fold superfamily. PEB3 is a glycoprotein adhesion from Campylobacter jejuni whose structure suggests a functional role in transport, and resembles PEB1a, an Asp/Glu transporter and an adhesin. The overall structure of PEB3 is a dimer and is similar to that of other type 2 periplasmic transport proteins such as the molybdate/tungstate, sulfate, and ferric iron transporters. PEB3 has high sequence identity to Paa, an Escherichia coli adhesin, and to AcfC, an accessory colonization factor from Vibrio cholera.	4.65723e-109
NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	4.7555e-119
NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein	gnl|CDD|223965	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion].	3.85378e-104
NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein	gnl|CDD|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	3.2602e-61
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.15463e-16
NC_015587.1|WP_015419024.1|335924_336614_-|peptidase	gnl|CDD|349948	cd18669, M20_18_42, M20, M18 and M42 Zn-peptidases include aminopeptidases and carboxypeptidases. This family corresponds to the MEROPS MH clan families M18, M20, and M42. The peptidase M20 family contains exopeptidases, including carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase, dipeptidases such as bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). This family also includes the bacterial aminopeptidase peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. These peptidases generally hydrolyze the late products of protein degradation so as to complete the conversion of proteins to free amino acids. Glutamate carboxypeptidase hydrolyzes folate analogs such as methotrexate, and therefore can be used to treat methotrexate toxicity. Peptidase families M18 and M42 contain metallo-aminopeptidases. M18 (aspartyl aminopeptidase, DAP) family cleaves only unblocked N-terminal acidic amino-acid residues and is highly selective for hydrolyzing aspartate or glutamate residues. Some M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacyl-peptidase activity (i.e. hydrolysis of acylated N-terminal residues).	1.68258e-05
NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein	gnl|CDD|350341	cd18773, PDC1_HK_sensor, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins, diguanylate-cyclase and similar domains. Histidine kinase (HK) receptors are part of two-component systems (TCS) in bacteria that play a critical role for sensing and adapting to environmental changes. Typically, HK receptors contain an extracellular sensing domain flanked by two transmembrane helices, an intracellular dimerization histidine phosphorylation domain (DHp), and a C-terminal kinase domain, with many variations on this theme. HK receptors in this family contain double PDC (PhoQ/DcuS/CitA) sensor domains. Signals detected by the sensor domain are transmitted through DHp to the kinase domain, resulting in the phosphorylation of a conserved histidine residue in DHp; phosphotransfer to a conserved aspartate in its cognate response regulator (RR) follows, which leads to the activation of genes for downstream cellular responses. The HK family includes not just histidine kinase receptors but also sensors for chemotaxis proteins and diguanylate cyclase receptors, implying a combinatorial molecular evolution.	7.0961e-06

Protein sequences

>NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4
MDFDRINGTLMWYSYICDRQVWFIGHSIEPPQENEYLGKGRAIHEIFYQNSAKELFVDNTIMIDVVRGKELIAELKSSSKHLRSAMMQMAFYLYYLKKEKGKMFSGKVLVPTEKKSYDVKLTDDIEKEIEDKIRHINEILALDKPPAFVKIPFCKNCAYKELCFA
>NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein
MIYGRDYDGDFEITPAKVKKEYMRKVFFDKTFIIGYDGQFYIRADKDMLKVALECGLGVKNSAGLGCIMKV
>NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6
MKVAYKLKLGFSFEKELVLPKHYNHTLQGFFYENMDRMLSRFFHDIGFPYNNRTFKLFTFSNIIGNLKAEYQNQIVYEPPNMYIYFSTPVIGAMKSIVNRVIRNDRLRLSKNIINLSEIEITEEPIDQDEIKIECLSPIVVYRTPIGSKRHIYFSPFENEFYELLRINILKNTG
>NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein
MKLLPIGIQTFEKIRNSNYYYVDKTMFVKKLEEGGYYFLSRPRRFGKSLFLDTLKEAFSGNKELFKGLYLYDNWDWEKKYPVIKFDLSQAYPDTEENLIESLKSFLDDIATLHHIKLTKRLIPLKFQELIQKLYEKYNQKVVVLIDEYDKPILDVIEDIEKAKRNRDILKKFFEILKPSDPYLKLVFLTGVSRFSKVSIFSGLNQLNDITIDPSFATVCGYTQSELESVFEDRLKDFDKEKIKVWYNGYSWLGESVYNPFDILLLFSEKRFRAFWFETGTPTFLIKMFMKNRYYIPELENLEVGEEILSNLDVDNIFPENLLFQAGYLTIKDYKVLGSKNVFKLSYPNFEVRMSFNDAFLTYIVRNPPLKDKAEINLITAIQEKNIDKIKDAIYMFLASIPHDWYRNNDIASYEGFYASIVYALFNGAGLNVISEDNTNKGQIDLSIFNQDSVYIIEFKVVEDKEEGVALKQIKDKRYYEKYIGKYQEVYLIGIEFSKKDKNIVSFEWEKV
>NC_015587.1|WP_015419024.1|335924_336614_-|peptidase
MDLNLDYLSHLLSLNESELYNHIFQEIKPNFYLNDMYLYLHKDDNLPCLVAHIDTVHKQKPKLDDIVLENDILFNRGCYGLGADDRAGVYALLTLKDLPYNLLFTNYEETGCIGVKKAIHDLPELLSANTCFIEIDRKETGHYVDYVGAEDEFLDIFNKRGLDKERGSYSDITDLSSELSIASVNLACGYRNPHTDEEYLNIKELQVVIDLLKDPSLIKEVSKRQFRTC
>NC_015587.1|WP_015419023.1|335030_335762_+|substrate-binding-domain-containing-protein
MSYSQVAYILFFVVKRLEVLAMLIHIYGPGGPYPAMNYVAKKFNKYQNKCRAVVKAGPLPVWKKEALKNGDIIYSGSEDMMEDFLRKLPNIDKSSIKPVYYRPSAIIYRDITIKSFKDLAKPGVKILVVNGAGQVGLWQDMAMKYGNFELLKAIEKNISHISYNSKDALEYWNTHKNVNAFIIYNIWAIAHHIKDYYIPKRHVIYRDMDISLTYKGDKNPCAKEFYNYVIEAKQAFKYFGWSY
>NC_015587.1|WP_015419022.1|333350_334958_+|arginine--tRNA-ligase
MKQLIKEIIKKTVKNLYNVEIEPQIQLPKEESYGDFASNVAFILSKTLKQKPQDIAITIADNLKNLPYFEKVEALNGFVNMKLSSAFYEELLFEFLENPINYIKDDAIFEAFGIKKEDEINLEYVSANPTGPLHLGHGRGAVIGDVLYRLFRFFDIKVDREYYINDAGNQVNLLAKSVMHYINQDLYPFPEDGYKGDYIKDIAEAFLKEHNKSDINLESVKDFAISKMMEDIKNTLKILNVEFDIYFSEKTLKDKVEKVLELLKEKNLIEEKDGAIWFKSKDEDKDRVLRKSDGSYTYFASDIAYHLDKYQRGYKKAIDLWGADHHGYIPRLKAALEALDIPQDWLSVELFQIVKLFENGQEVRMSKRTGKMLKLIDVIEDIGADNLRFMFLTKKADTPLDIDINLVKAQNSENPVFYVQYAYARTMGIKRQLKEPFVFGFYKDKYTYEEEELDLIKRILSSKDVLFEGVIKKDPSLVVKLSLDIAKSFHKFYNTHKVITSDEITTKKRISLVYATQKIFDIIFDILNIKAPEMM
>NC_015587.1|WP_015419021.1|332924_333341_+|hypothetical-protein
MMFLVLKAFHIMSVILWAGASSSLGLFTIVAYAKGINCDYDYMWRFYKKLVNLELFAFFLVIFFGIGMYSMLGFKPIPWLMMKLPIVFGFFLPMEALNVYFIHVKNDIKTYGKFIKIVSPFLIIAGICVILLAVIRPS
>NC_015587.1|WP_015419020.1|332001_332928_+|DUF523-and-DUF1722-domain-containing-protein
MKPLAKPNVLVSACFFEACRYNGAYISDDFVKSLSNFVNIIKVCPEVEIGLGIPRDPILIQKEDDHLKLIQPSTGLDLTEKMTNFSKNFVKNLNIDGAILKSKSPSCGVYSAKYFHKNGQSLGKGPGFFAKELLDAFEDYPIEEEKRLLDDGIRYDFLTKIFAIADLRENFEHMKDYSELIEFHTRYKFMLMYYNQNIMRFLGRFVASSKNEDFNSVKDTYKKQFLKALNSKRKRLNHINVMEHIFGYFSRKLSNAERRHFMEVLKLFKENKVDIFVPLYMLKSFAIRFDDEYILKQTYLEPFPKELI
>NC_015587.1|WP_015419019.1|331673_332024_+|iron-sulfur-cluster-assembly-scaffold-protein
MKVDEYLKAGLKNEVSESLEGLMYGLCKEGCHRLELFIKKENDAIVDCKFKATKRCKKLLAVSDFLCEELKGKTSIDKNALKQKALEHFKEEKEKDKVENRIDIFLSALDEALGKA
>NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MFKFKTHKYFNSPKLKSVSLKKDENHPNKGYIIVSGLFGNKKHMHWVINEEDTNKEIKIPENVIEEYKSDVNREEKFDLLKIADSGKSVPCFYITDNQNTDNQNNVLAFGHTGFFRLPYELTIGDHIPEELRSEDKTDFAEAIFGKESKWASRVFFEDAFLGEEQNDVFMNETSPKILASPKPTAFQLYLEQPYEENTYLRNLKHWDDKDALIRGHKLYWHRDTPDNPKDKYSWNEGEVKDDTQHTVIKPIKRNIKFKSRIRFENLTKEELGALLFVLDLPQNHYHKIGMGKPLGLGSIEIKPKVFIVDREKRYKSLFKDDAWNLAEEDKTSEINEFKNAFGTYILSKISNDNKRNANDDKKSADLLWQTERLSQLKIMLSWNNPETRDWLEKTRYMMIECQPTVGYECICAGTNKDKCNEYKDRPVLPKPEKVIISNR
>NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein
MGDIKMKASEYAAMMSVSLNTVKNRIKAGILNGAKEEDGIWYVYLTSDEYENLQNSKEKSQEREQAISDSIEKLKALPDGALIATYINIQRYAEFQKQELMQELSSLYALLAVKEKEIEFLSKDLDRYKSKIEELKEENLSLSEKLKNLSKELEDCKKEYKDLDNKYQRADIDMKKIILDKEKEILEKEREIEELKRKLSML
>NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease
MYFSESFENDAYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAMLVGQPKVEEVIYDFDNFVKDYIIVGHNVKFDLSFLNKAYSIYLHKKLQSPNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDIIRRQYKKELSYFYLKSLINSRI
>NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein
MKFYKSKILTSAISILTLINITFAGAKTDKNVDKSHKTINQQSATNNSFEELLHSTPGVLVNRVVASVNGEPILESDLKIAMVYFGTKDAKLALKRLIDIYLIYQYLSENHMATPESFLDQTIKDLASQNNLTIEQLYEELKKQGISPKEFRDFLRKEILATAGFGEYLRKAVKITPSDIELLKLKYGKPKIERDIELLIVPKKDKDKLSKLLNNTTSLKTIASKLNLTPQELEVAKGDLKKNLDEQVWKASKGDIVFAEGKNNIYIAKVKNIKLVYKNIDLDKLKKKLLEEKMKKKYDEILHKLKKESYIKVYLQ
>NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein
MPKAENYVSLDIFSSNIPAFNYEDSVDLVYKFFKEKPFYKYVVILKNQTPIGIVKKDDIAFANRNLNVGELSKPLPKVKNTNINPQRLSDVIEVLRLQVSDIFLVNNKNQYIGVINYDTVIHYLSKFPDSSQDKISNMLGKDYYAVVIGFQDFKELKEELSYKIDSLFKLIRDLLKNMSNECCTYIEKSDNEIYSVHKTKITKDVINKFFDEFYKEYNVLFQTHKTPVMYAIVLNLNNIKSYDAFLKRIDILKVYIKDMKNTVAIIDGLQPLLITHLSKQDYPTVQLIKEKISSSIQDIANNLVKTEKNLWEFVVYDMFKKYPFYDLIYIMNESGIQISNNIINPDISKSIATGKKGADRSKEAYFKNASETPYITGVYLSKATDDFCITVSLAFKYQNKSYVIAGDIAYSDIGKISLQSE
>NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MGIAFFGGSFDPIHIGHILVARDVCELCDVDKIYFMPAFISPFKPKPIASPKQRFEMLKLALEDEPWAFIEDIELKKEEISYTYKSALMLKEKYKENPTFIIGYDAYLTLDKWYRYEDLVKIANFIVVKRGKEDIFINNDIDAIFCNTRTIDISSTEIRERIKHGKSVKYMIPDKVLEYILKEGIYAKS
>NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein
MKNANIHIGISGYYYKDAIGRFYPNGIRPSEFILYYQRFFDSVELNFTFYRYPQKHHIKSILKKAPNLRYSIKLHRSFTHFKNYDKKSLEKFIEDIELIVSSGRFIALLMQFPPSMHYKEESLEHIEDLIKSLKPIPLAIEFRSKSFNRKDVFELLKENNVSIVNVDAPKKEDALVGPWISTANFNYIRIHGKDEENPYKYIYSIDELKKLKTKIRKIEEYKPTYIFFNNTFGAGAFLNALELKKLYGFDVEIPDKLEAIRNQGIWV
>NC_015587.1|WP_015419035.1|350236_351436_-|hypothetical-protein
MQISLGKIRYTLLWCLVFTFFISITIFEAFVVIYLLVLLYDEIKNKNLKGILTAPIFTYITPGLISSILFNISKINHAIEELVFMLLYLAKNYLDIDYLAFAKKINFYFCLIGIPLTIVGLYNIKLKGYEMLLFGGAFDAGFIFSILAFSSIGIFLYKKDWKRFLFLGLFLVYTLMVVLSTKRSDLLGFLAGLSVFLSASLGSYSKKLVLSILTASVLVLSIGGFYVFRKDPRFDVIVKILKHEQITTKELNTVSSLRYKIMIHAFRVIDKDIKDKNIVAILIGHGVRSGLKLDPKLGLEKFESFEGLSEYIEKGLIGLIGLIWFYWRVLKFSFSLKAFKQEDFLFIPFVATMVYQLFGSLFTFFWSLYLPLILLLFGIAENWFLKQPLSKNEMHRAAL
>NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein
MSEVVFYLKDKLKGELIQTHSSFVIITDEFVYKIKKPVNFGFLDYSTLEKRLFYSYKELEINKRFCEDVYLGVIPIIKINNTYELSQEDIDEALVVEYAVKMKRVKDELFMINKLNSLKEEDIKNVAKKIAYFHSQSKKMYDFDVYNQMKFNTDENFEQTKEFIGKTIEQEDYEFIKDKVNSFYKKHKDLFYKRQKKGYVIDGHGDIRLEHVVIDKDNICIMDAIEFNDRFRIQDQINDMCFLSMELDLKGYRDFAKIYEDTYKSATKDEDFDIFLNFYKSYRAYVRGKVTSFLLKDPHIENKDSAIQNAKKLFKLSKEYADLIR
>NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein
MEVSIFIDGKEYKAPKGENLLKYMLSVGIEIPYFCYLDRLPALGSCRLCIVLVENQNRVIPSCTLQIQEGLRVSTQAKAVKENQAYLLQAYMTRHPLDCPICDKAGECDLQNYGALYGPQTQIVPVSALEKHREEHDWQSDYLEYYSNRCVVCYRCTRVCDYINKAKALYVEERGFDSNIVPTVRPIDTSSCDMCGMCVDVCPVGAIISKPFKFWSRSWLLKNEETVCLNCPTGCNIELEFGVGDWKSKAQVYRTKPGKELDSCAKIFFGYDMLNDNRIKEPITNQNRFPFSEPIEIINKNFKEKPMAVIISPFMTNEEISLALEIAKKVSSYVSSVISVDLIPFLKAYNKPIAHLDDITSKTKFVFIGDDISSVAPVVSYRINGKVYKTSNKKSRDDKFKPTYIDIEKIHDVIDKDTAIIVDVYSFRYEEASKLGNMLNKIDAPVMPIPLQTNALGLYEALKDIPITDIGLILEMIKQGEIKSVLLFGEDLFDYFDKDVVFEAFKNTKLTLVTPFKSDLSLLADTCIPMKLTGEKDGTIHTLRGLKKVSKVLPFPIDDDILKELPKLAGIGNSFSYKEGMFKTDYKKEVSVYNSSWILEHSKLLQNLENKNKEAMINV

Crispr_ID: NC_015587_3

• CRISPR_ID: NC_015587_3
• CRISPR_location: 346996-347159
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: DEDDh,csm3gr7,cas1,cas4,cas6

Consensus repeat of NC_015587_3

Consensus_repeat	Method
GAGTTTCATCTGAACCGTGTGGGTTAAGAA	CRISPRCasFinder
GAGTTTCATCTGAACCGTGTGGGTTAAGAAGC	PILER-CR

spacers of NC_015587_3

>3.1|347026|35|NC_015587|CRISPRCasFinder
GCACAACACCTTTGCCGTTTACAAGCACGTTTGAA
>3.2|347091|37|NC_015587|CRISPRCasFinder
GCTGATTTGACAGCATCAAATACAGTTGCAATAATCT
>3.3|347030|33|NC_015587|PILER-CR
ACAACACCTTTGCCGTTTACAAGCACGTTTGAA
>3.4|347095|35|NC_015587|PILER-CR
TGATTTGACAGCATCAAATACAGTTGCAATAATCT

CRISPR arrays and Neighbor proteins around NC_015587_3

CRISPR arrays

The CRISPR arrays of NC_015587_3

>merge|NC_015587|3|346996-347159|CRISPRCasFinder,PILER-CR
GGGTTTCATCTGAACCGTGTGGGTTAAGAAGCACAACACCTTTGCCGTTTACAAGCACGTTTGAAGAGTTTCATCTGAACCGTGTGGGTTAAGAAGCTGATTTGACAGCATCAAATACAGTTGCAATAATCTGAGTTTCATCTGAACCGTGTGGGTTAAGAAAA

>NC_015587|3|3|346996-347157|CRISPRCasFinder
GGGTTTCATCTGAACCGTGTGGGTTAAGAA	GCACAACACCTTTGCCGTTTACAAGCACGTTTGAA
GAGTTTCATCTGAACCGTGTGGGTTAAGAA	GCTGATTTGACAGCATCAAATACAGTTGCAATAATCT
GAGTTTCATCTGAACCGTGTGGGTTAAGAA

>NC_015587|3|2|346998-347159|PILER-CR
GTTTCATCTGAACCGTGTGGGTTAAGAAGCAC	AACACCTTTGCCGTTTACAAGCACGTTTGAAGA
GTTTCATCTGAACCGTGTGGGTTAAGAAGCTG	ATTTGACAGCATCAAATACAGTTGCAATAATCTGA
GTTTCATCTGAACCGTGTGGGTTAAGAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein	unknown	unknown	gnl|CDD|225098
NC_015587.1|WP_015419035.1|350236_351436_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein	unknown	unknown	gnl|CDD|223965
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|185680
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_015587.1|WP_015419024.1|335924_336614_-|peptidase	unknown	unknown	gnl|CDD|349948
NC_015587.1|WP_015419027.1|339705_340608_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl|CDD|224499
NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein	unknown	unknown	gnl|CDD|312718
NC_015587.1|WP_015419039.1|354902_355754_-|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|225293
NC_015587.1|WP_015419038.1|354235_354910_-|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl|CDD|234695
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl|CDD|176648
NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein	unknown	unknown	gnl|CDD|313108
NC_015587.1|WP_015419041.1|357636_358161_-|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl|CDD|225054
NC_015587.1|WP_015471339.1|355798_357631_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl|CDD|235362
NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein	unknown	unknown	gnl|CDD|376655
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|273848
NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein	unknown	unknown	gnl|CDD|350341

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	1.4e-48	159.8	0.0
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.5e-41	137.0	0.2
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	5.6e-22	73.5	5.2
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	4.6e-114	377.4	9.1
NC_015587.1|WP_015419027.1|339705_340608_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.8e-122	403.2	8.7
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	6.2e-16	53.9	0.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein	gnl|CDD|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	1.88899e-99
NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein	gnl|CDD|223965	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion].	3.85378e-104
NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.66404e-48
NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|185680	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.	3.3435e-64
NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.73205e-103
NC_015587.1|WP_015419024.1|335924_336614_-|peptidase	gnl|CDD|349948	cd18669, M20_18_42, M20, M18 and M42 Zn-peptidases include aminopeptidases and carboxypeptidases. This family corresponds to the MEROPS MH clan families M18, M20, and M42. The peptidase M20 family contains exopeptidases, including carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase, dipeptidases such as bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). This family also includes the bacterial aminopeptidase peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. These peptidases generally hydrolyze the late products of protein degradation so as to complete the conversion of proteins to free amino acids. Glutamate carboxypeptidase hydrolyzes folate analogs such as methotrexate, and therefore can be used to treat methotrexate toxicity. Peptidase families M18 and M42 contain metallo-aminopeptidases. M18 (aspartyl aminopeptidase, DAP) family cleaves only unblocked N-terminal acidic amino-acid residues and is highly selective for hydrolyzing aspartate or glutamate residues. Some M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacyl-peptidase activity (i.e. hydrolysis of acylated N-terminal residues).	1.68258e-05
NC_015587.1|WP_015419027.1|339705_340608_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.31971e-144
NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein	gnl|CDD|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.58344e-08
NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein	gnl|CDD|312718	pfam09312, SurA_N, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	9.06613e-12
NC_015587.1|WP_015419039.1|354902_355754_-|DUF86-domain-containing-protein	gnl|CDD|225293	COG2445, COG2445, Uncharacterized conserved protein [Function unknown].	8.58857e-19
NC_015587.1|WP_015419038.1|354235_354910_-|orotidine-5'-phosphate-decarboxylase	gnl|CDD|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	5.00683e-65
NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease	gnl|CDD|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.90339e-55
NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	4.7555e-119
NC_015587.1|WP_015419041.1|357636_358161_-|thioredoxin-fold-domain-containing-protein	gnl|CDD|225054	COG2143, COG2143, Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones].	1.59422e-17
NC_015587.1|WP_015471339.1|355798_357631_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl|CDD|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein	gnl|CDD|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	3.2602e-61
NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.15463e-16
NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	6.46467e-06
NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein	gnl|CDD|350341	cd18773, PDC1_HK_sensor, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins, diguanylate-cyclase and similar domains. Histidine kinase (HK) receptors are part of two-component systems (TCS) in bacteria that play a critical role for sensing and adapting to environmental changes. Typically, HK receptors contain an extracellular sensing domain flanked by two transmembrane helices, an intracellular dimerization histidine phosphorylation domain (DHp), and a C-terminal kinase domain, with many variations on this theme. HK receptors in this family contain double PDC (PhoQ/DcuS/CitA) sensor domains. Signals detected by the sensor domain are transmitted through DHp to the kinase domain, resulting in the phosphorylation of a conserved histidine residue in DHp; phosphotransfer to a conserved aspartate in its cognate response regulator (RR) follows, which leads to the activation of genes for downstream cellular responses. The HK family includes not just histidine kinase receptors but also sensors for chemotaxis proteins and diguanylate cyclase receptors, implying a combinatorial molecular evolution.	7.0961e-06

Protein sequences

>NC_015587.1|WP_015419030.1|345390_346341_-|SurA-domain-containing-protein
MKFYKSKILTSAISILTLINITFAGAKTDKNVDKSHKTINQQSATNNSFEELLHSTPGVLVNRVVASVNGEPILESDLKIAMVYFGTKDAKLALKRLIDIYLIYQYLSENHMATPESFLDQTIKDLASQNNLTIEQLYEELKKQGISPKEFRDFLRKEILATAGFGEYLRKAVKITPSDIELLKLKYGKPKIERDIELLIVPKKDKDKLSKLLNNTTSLKTIASKLNLTPQELEVAKGDLKKNLDEQVWKASKGDIVFAEGKNNIYIAKVKNIKLVYKNIDLDKLKKKLLEEKMKKKYDEILHKLKKESYIKVYLQ
>NC_015587.1|WP_015419029.1|344786_345377_-|3'-5'-exonuclease
MYFSESFENDAYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAMLVGQPKVEEVIYDFDNFVKDYIIVGHNVKFDLSFLNKAYSIYLHKKLQSPNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDIIRRQYKKELSYFYLKSLINSRI
>NC_015587.1|WP_012513462.1|344158_344767_+|hypothetical-protein
MGDIKMKASEYAAMMSVSLNTVKNRIKAGILNGAKEEDGIWYVYLTSDEYENLQNSKEKSQEREQAISDSIEKLKALPDGALIATYINIQRYAEFQKQELMQELSSLYALLAVKEKEIEFLSKDLDRYKSKIEELKEENLSLSEKLKNLSKELEDCKKEYKDLDNKYQRADIDMKKIILDKEKEILEKEREIEELKRKLSML
>NC_015587.1|WP_015419028.1|342310_343630_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MFKFKTHKYFNSPKLKSVSLKKDENHPNKGYIIVSGLFGNKKHMHWVINEEDTNKEIKIPENVIEEYKSDVNREEKFDLLKIADSGKSVPCFYITDNQNTDNQNNVLAFGHTGFFRLPYELTIGDHIPEELRSEDKTDFAEAIFGKESKWASRVFFEDAFLGEEQNDVFMNETSPKILASPKPTAFQLYLEQPYEENTYLRNLKHWDDKDALIRGHKLYWHRDTPDNPKDKYSWNEGEVKDDTQHTVIKPIKRNIKFKSRIRFENLTKEELGALLFVLDLPQNHYHKIGMGKPLGLGSIEIKPKVFIVDREKRYKSLFKDDAWNLAEEDKTSEINEFKNAFGTYILSKISNDNKRNANDDKKSADLLWQTERLSQLKIMLSWNNPETRDWLEKTRYMMIECQPTVGYECICAGTNKDKCNEYKDRPVLPKPEKVIISNR
>NC_015587.1|WP_015419027.1|339705_340608_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKTLYLFSSGRLERKDNTLHWESEKGSKTIPVAVISDIKVFGEIDLNKRLLEFLDKNDIPIHFFNYYGYYVGSFYPRNAYNCGIIILKQAEHYMDKDKRFYIAKNFLVGAISNMLKNLKYYENRGNEELKSISSYITEKLKALDLKEDIQTLMQTEGDVRKTYYQAFNSILKDMEFEKRTKRPPEDPLNAMISFGNSLLYTTVLSEIYKTHLDPRIGYLHETNQRSFTLNLDIAEVFKPVIVDRVIFQLLNKNQITEKHFDKDISFAYLNESGREIFVRSFEEKLNTTIKYKNMFCLCL
>NC_015587.1|WP_015419026.1|339204_339702_+|CRISPR-associated-protein-Cas4
MDFDRINGTLMWYSYICDRQVWFIGHSIEPPQENEYLGKGRAIHEIFYQNSAKELFVDNTIMIDVVRGKELIAELKSSSKHLRSAMMQMAFYLYYLKKEKGKMFSGKVLVPTEKKSYDVKLTDDIEKEIEDKIRHINEILALDKPPAFVKIPFCKNCAYKELCFA
>NC_015587.1|WP_083807479.1|338984_339200_+|hypothetical-protein
MIYGRDYDGDFEITPAKVKKEYMRKVFFDKTFIIGYDGQFYIRADKDMLKVALECGLGVKNSAGLGCIMKV
>NC_015587.1|WP_051048516.1|338463_338988_+|CRISPR-associated-endoribonuclease-Cas6
MKVAYKLKLGFSFEKELVLPKHYNHTLQGFFYENMDRMLSRFFHDIGFPYNNRTFKLFTFSNIIGNLKAEYQNQIVYEPPNMYIYFSTPVIGAMKSIVNRVIRNDRLRLSKNIINLSEIEITEEPIDQDEIKIECLSPIVVYRTPIGSKRHIYFSPFENEFYELLRINILKNTG
>NC_015587.1|WP_015419025.1|336854_338390_-|ATP-binding-protein
MKLLPIGIQTFEKIRNSNYYYVDKTMFVKKLEEGGYYFLSRPRRFGKSLFLDTLKEAFSGNKELFKGLYLYDNWDWEKKYPVIKFDLSQAYPDTEENLIESLKSFLDDIATLHHIKLTKRLIPLKFQELIQKLYEKYNQKVVVLIDEYDKPILDVIEDIEKAKRNRDILKKFFEILKPSDPYLKLVFLTGVSRFSKVSIFSGLNQLNDITIDPSFATVCGYTQSELESVFEDRLKDFDKEKIKVWYNGYSWLGESVYNPFDILLLFSEKRFRAFWFETGTPTFLIKMFMKNRYYIPELENLEVGEEILSNLDVDNIFPENLLFQAGYLTIKDYKVLGSKNVFKLSYPNFEVRMSFNDAFLTYIVRNPPLKDKAEINLITAIQEKNIDKIKDAIYMFLASIPHDWYRNNDIASYEGFYASIVYALFNGAGLNVISEDNTNKGQIDLSIFNQDSVYIIEFKVVEDKEEGVALKQIKDKRYYEKYIGKYQEVYLIGIEFSKKDKNIVSFEWEKV
>NC_015587.1|WP_015419024.1|335924_336614_-|peptidase
MDLNLDYLSHLLSLNESELYNHIFQEIKPNFYLNDMYLYLHKDDNLPCLVAHIDTVHKQKPKLDDIVLENDILFNRGCYGLGADDRAGVYALLTLKDLPYNLLFTNYEETGCIGVKKAIHDLPELLSANTCFIEIDRKETGHYVDYVGAEDEFLDIFNKRGLDKERGSYSDITDLSSELSIASVNLACGYRNPHTDEEYLNIKELQVVIDLLKDPSLIKEVSKRQFRTC
>NC_015587.1|WP_015419032.1|347568_348834_-|PDC-sensor-domain-containing-protein
MPKAENYVSLDIFSSNIPAFNYEDSVDLVYKFFKEKPFYKYVVILKNQTPIGIVKKDDIAFANRNLNVGELSKPLPKVKNTNINPQRLSDVIEVLRLQVSDIFLVNNKNQYIGVINYDTVIHYLSKFPDSSQDKISNMLGKDYYAVVIGFQDFKELKEELSYKIDSLFKLIRDLLKNMSNECCTYIEKSDNEIYSVHKTKITKDVINKFFDEFYKEYNVLFQTHKTPVMYAIVLNLNNIKSYDAFLKRIDILKVYIKDMKNTVAIIDGLQPLLITHLSKQDYPTVQLIKEKISSSIQDIANNLVKTEKNLWEFVVYDMFKKYPFYDLIYIMNESGIQISNNIINPDISKSIATGKKGADRSKEAYFKNASETPYITGVYLSKATDDFCITVSLAFKYQNKSYVIAGDIAYSDIGKISLQSE
>NC_015587.1|WP_015419033.1|348820_349390_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MGIAFFGGSFDPIHIGHILVARDVCELCDVDKIYFMPAFISPFKPKPIASPKQRFEMLKLALEDEPWAFIEDIELKKEEISYTYKSALMLKEKYKENPTFIIGYDAYLTLDKWYRYEDLVKIANFIVVKRGKEDIFINNDIDAIFCNTRTIDISSTEIRERIKHGKSVKYMIPDKVLEYILKEGIYAKS
>NC_015587.1|WP_015419034.1|349380_350184_-|DUF72-domain-containing-protein
MKNANIHIGISGYYYKDAIGRFYPNGIRPSEFILYYQRFFDSVELNFTFYRYPQKHHIKSILKKAPNLRYSIKLHRSFTHFKNYDKKSLEKFIEDIELIVSSGRFIALLMQFPPSMHYKEESLEHIEDLIKSLKPIPLAIEFRSKSFNRKDVFELLKENNVSIVNVDAPKKEDALVGPWISTANFNYIRIHGKDEENPYKYIYSIDELKKLKTKIRKIEEYKPTYIFFNNTFGAGAFLNALELKKLYGFDVEIPDKLEAIRNQGIWV
>NC_015587.1|WP_015419035.1|350236_351436_-|hypothetical-protein
MQISLGKIRYTLLWCLVFTFFISITIFEAFVVIYLLVLLYDEIKNKNLKGILTAPIFTYITPGLISSILFNISKINHAIEELVFMLLYLAKNYLDIDYLAFAKKINFYFCLIGIPLTIVGLYNIKLKGYEMLLFGGAFDAGFIFSILAFSSIGIFLYKKDWKRFLFLGLFLVYTLMVVLSTKRSDLLGFLAGLSVFLSASLGSYSKKLVLSILTASVLVLSIGGFYVFRKDPRFDVIVKILKHEQITTKELNTVSSLRYKIMIHAFRVIDKDIKDKNIVAILIGHGVRSGLKLDPKLGLEKFESFEGLSEYIEKGLIGLIGLIWFYWRVLKFSFSLKAFKQEDFLFIPFVATMVYQLFGSLFTFFWSLYLPLILLLFGIAENWFLKQPLSKNEMHRAAL
>NC_015587.1|WP_015419036.1|351416_352394_-|hypothetical-protein
MSEVVFYLKDKLKGELIQTHSSFVIITDEFVYKIKKPVNFGFLDYSTLEKRLFYSYKELEINKRFCEDVYLGVIPIIKINNTYELSQEDIDEALVVEYAVKMKRVKDELFMINKLNSLKEEDIKNVAKKIAYFHSQSKKMYDFDVYNQMKFNTDENFEQTKEFIGKTIEQEDYEFIKDKVNSFYKKHKDLFYKRQKKGYVIDGHGDIRLEHVVIDKDNICIMDAIEFNDRFRIQDQINDMCFLSMELDLKGYRDFAKIYEDTYKSATKDEDFDIFLNFYKSYRAYVRGKVTSFLLKDPHIENKDSAIQNAKKLFKLSKEYADLIR
>NC_015587.1|WP_015419037.1|352386_354246_-|(2Fe-2S)-binding-protein
MEVSIFIDGKEYKAPKGENLLKYMLSVGIEIPYFCYLDRLPALGSCRLCIVLVENQNRVIPSCTLQIQEGLRVSTQAKAVKENQAYLLQAYMTRHPLDCPICDKAGECDLQNYGALYGPQTQIVPVSALEKHREEHDWQSDYLEYYSNRCVVCYRCTRVCDYINKAKALYVEERGFDSNIVPTVRPIDTSSCDMCGMCVDVCPVGAIISKPFKFWSRSWLLKNEETVCLNCPTGCNIELEFGVGDWKSKAQVYRTKPGKELDSCAKIFFGYDMLNDNRIKEPITNQNRFPFSEPIEIINKNFKEKPMAVIISPFMTNEEISLALEIAKKVSSYVSSVISVDLIPFLKAYNKPIAHLDDITSKTKFVFIGDDISSVAPVVSYRINGKVYKTSNKKSRDDKFKPTYIDIEKIHDVIDKDTAIIVDVYSFRYEEASKLGNMLNKIDAPVMPIPLQTNALGLYEALKDIPITDIGLILEMIKQGEIKSVLLFGEDLFDYFDKDVVFEAFKNTKLTLVTPFKSDLSLLADTCIPMKLTGEKDGTIHTLRGLKKVSKVLPFPIDDDILKELPKLAGIGNSFSYKEGMFKTDYKKEVSVYNSSWILEHSKLLQNLENKNKEAMINV
>NC_015587.1|WP_015419038.1|354235_354910_-|orotidine-5'-phosphate-decarboxylase
MPKLALAIDDKSSLNILKELEGLPLVVKIGPIVFLEEGFSLLKALKQSGFEVFLDLKFHDIPNTVLKSVEICAKNNIDYLTVHTLGGKEMLSPLKDIKGNTNIIGVTILTSHDSSYLEFLGSRYSLEEMVLNLAGVANECNLDGVVCSGFEAFSIKNKFPNLKTVIPGVRLDKDKKDDQKRVVSLQEVGGIADIIVMGRSIFNSPNPKETIFSILNMLGGYHGS
>NC_015587.1|WP_015419039.1|354902_355754_-|DUF86-domain-containing-protein
MKTKGFNISLIVQSFINLEKAYKDILKNLKLPKESFVQNKLAIDKVRTDFNIAFEAAMRPCRHISQVLNIKTTKHCLYELSESLGFPFAKDMKDLSEFYINYRDLKKDIDPSYLYDFLSTHIKLFRDYAEQIINYIKTTTKNYLLIDYDLLNEKAKHIKDAVEKLRFVLSKDEAEFLSKPMYFDRAKYFYQVAYDALFDICRHLSPKFKLKNPSDDCLVIMAQANIIENPNIAYDMMRLKNRLITTWDVDHKEFYEALKKLLPYFETYIKELSASVKELVKNA
>NC_015587.1|WP_015471339.1|355798_357631_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MKFDVVVVGTGHAGIEAAIAASKLCDSVGLFTINIDNIGQMSCNPAIGGIAKSIVVREIDILGGEMAKAIDATGIQFKMLNRRKGEAVWAPRAQADKLKYKEYMKKALMNIPNLYLVQDEVIDILVKDNKVIGVKTKLGIEYQCKAVVVTTGTFLNGKIFIGDKVFPGGRAWEPPSTNLDEFYKRFGFTLKRFKTGTPARLDKRTINFDELEIAPGDEPAPKFSLFSDPRGSYWFEPNKKQINCYITYTNPKTHEIIRKNLHRTALYGGLIKGVGPRYCPSIEDKVVKFESKAQHQIFLEPEGEDTIEIYPNGLSTSLPEDIQQEMYRTIKGLENVVLIRPAYAIEYDIVDPLELYPTLETKKIKGLFHAGNFNGTTGYEEAAGQGILAGINAGLRANNKEPIILPRSISYIGLMAEDLTTKEIVEPYRLFTSRSEYRLSVRQDNAPERLLELSHNLGLLNEEDYKLAKELLNGINYYVDYYKSQKTVINLGENPKPYTLSQIIAIEGIDKLKELGFDVPQNPYIKDETEIILKYEYYIEKEKKLNEKLKMFEHIKLPPDMDYENVKGLTKEAIEKLKKLKPATIAQAKNIDGITPASISAILIHMGILG
>NC_015587.1|WP_015419041.1|357636_358161_-|thioredoxin-fold-domain-containing-protein
MRKFLKISLFFSIGLLIASCSKQNGVNEYLKSSSSKNVPIVSLIPSKDYEMLIIESSDCPYCHKLQHDITTNPELIKALKNVEVAPVLADDTSKLYKLVINNHKLIGTGEDIASDLGVNAYPNIFFLNKEGKVILNVPGYVKPKTMVCVINFITTKSYKKEDINSYIKANNCLS

Crispr_ID: NC_015587_4

• CRISPR_ID: NC_015587_4
• CRISPR_location: 591474-592162
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 10 spacers
• Cas_protein_info: cas6,cas7,cas5,cas3,cas4,cas14j

Consensus repeat of NC_015587_4

Consensus_repeat	Method
GTTTCATCTGAACCGTGTGGGATATAAA	PILER-CR
GTTTCATCTGAACCGTGTGGGATATAAAGT	CRISPRCasFinder
GTTTCATCTGAACCGTGTGGGATATAAA	CRT

spacers of NC_015587_4

>4.1|591502|38|NC_015587|PILER-CR,CRT
TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG
>4.2|591568|38|NC_015587|PILER-CR,CRT
TATAAGTATGAAGCGTATGAATATATTATACCTGATAC
>4.3|591634|39|NC_015587|PILER-CR,CRT
TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA
>4.4|591701|38|NC_015587|PILER-CR,CRT
TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG
>4.5|591767|38|NC_015587|PILER-CR,CRT
GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG
>4.6|591833|38|NC_015587|PILER-CR,CRT
GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT
>4.7|591899|37|NC_015587|PILER-CR,CRT
GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC
>4.8|591964|38|NC_015587|PILER-CR,CRT
GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT
>4.9|592030|38|NC_015587|PILER-CR,CRT
GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT
>4.10|592096|37|NC_015587|PILER-CR,CRT
GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG
>4.11|591504|36|NC_015587|CRISPRCasFinder
ACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG
>4.12|591570|36|NC_015587|CRISPRCasFinder
TAAGTATGAAGCGTATGAATATATTATACCTGATAC
>4.13|591636|37|NC_015587|CRISPRCasFinder
GTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA
>4.14|591703|36|NC_015587|CRISPRCasFinder
AATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG
>4.15|591769|36|NC_015587|CRISPRCasFinder
ATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG
>4.16|591835|36|NC_015587|CRISPRCasFinder
GCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT
>4.17|591901|35|NC_015587|CRISPRCasFinder
ATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC
>4.18|591966|36|NC_015587|CRISPRCasFinder
TCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT
>4.19|592032|36|NC_015587|CRISPRCasFinder
CGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT
>4.20|592098|35|NC_015587|CRISPRCasFinder
ATTTTGGATCTGATGTATGGCAATTTATAGATCAG

CRISPR arrays and Neighbor proteins around NC_015587_4

CRISPR arrays

The CRISPR arrays of NC_015587_4

>merge|NC_015587|4|591474-592162|PILER-CR,CRISPRCasFinder,CRT
GTTTCATCTGAACCGTGTGGGATATAAATAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTGGTTTCATCTGAACCGTGTGGGATATAAATATAAGTATGAAGCGTATGAATATATTATACCTGATACGTTTCATCTGAACCGTGTGGGATATAAATAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCAGTTTCATCTGAACCGTGTGGGATATAAATGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGGGTTTCATCTGAACCGTGTGGGATATAAAGTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGGGTTTCATCTGAACCGTGTGGGATATAAAGTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATTGTTTCATCTGAACCGTGTGGGATATAAAGTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGACGTTTCATCTGAACCGTGTGGGATATAAAGTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTTGTTTCATCTGAACCGTGTGGGATATAAAGTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCATGTTTCATCTGAACCGTGTGGGATATAAAGGATTTTGGATCTGATGTATGGCAATTTATAGATCAGGTTTCATCTGAACCGTGTGGGATATAAATT

>NC_015587|4|3|591474-592160|PILER-CR
GTTTCATCTGAACCGTGTGGGATATAAA	TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG
GTTTCATCTGAACCGTGTGGGATATAAA	TATAAGTATGAAGCGTATGAATATATTATACCTGATAC
GTTTCATCTGAACCGTGTGGGATATAAA	TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA
GTTTCATCTGAACCGTGTGGGATATAAA	TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG
GTTTCATCTGAACCGTGTGGGATATAAA	GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG
GTTTCATCTGAACCGTGTGGGATATAAA	GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT
GTTTCATCTGAACCGTGTGGGATATAAA	GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC
GTTTCATCTGAACCGTGTGGGATATAAA	GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT
GTTTCATCTGAACCGTGTGGGATATAAA	GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT
GTTTCATCTGAACCGTGTGGGATATAAA	GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG
GTTTCATCTGAACCGTGTGGGATATAAA

>NC_015587|4|4|591474-592162|CRISPRCasFinder
GTTTCATCTGAACCGTGTGGGATATAAATA	ACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG
GTTTCATCTGAACCGTGTGGGATATAAATA	TAAGTATGAAGCGTATGAATATATTATACCTGATAC
GTTTCATCTGAACCGTGTGGGATATAAATA	GTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA
GTTTCATCTGAACCGTGTGGGATATAAATG	AATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG
GTTTCATCTGAACCGTGTGGGATATAAAGT	ATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG
GTTTCATCTGAACCGTGTGGGATATAAAGT	GCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT
GTTTCATCTGAACCGTGTGGGATATAAAGT	ATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC
GTTTCATCTGAACCGTGTGGGATATAAAGT	TCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT
GTTTCATCTGAACCGTGTGGGATATAAAGT	CGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT
GTTTCATCTGAACCGTGTGGGATATAAAGG	ATTTTGGATCTGATGTATGGCAATTTATAGATCAG
GTTTCATCTGAACCGTGTGGGATATAAATT

>NC_015587|4|2|591474-592160|CRT
GTTTCATCTGAACCGTGTGGGATATAAA	TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG
GTTTCATCTGAACCGTGTGGGATATAAA	TATAAGTATGAAGCGTATGAATATATTATACCTGATAC
GTTTCATCTGAACCGTGTGGGATATAAA	TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA
GTTTCATCTGAACCGTGTGGGATATAAA	TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG
GTTTCATCTGAACCGTGTGGGATATAAA	GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG
GTTTCATCTGAACCGTGTGGGATATAAA	GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT
GTTTCATCTGAACCGTGTGGGATATAAA	GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC
GTTTCATCTGAACCGTGTGGGATATAAA	GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT
GTTTCATCTGAACCGTGTGGGATATAAA	GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT
GTTTCATCTGAACCGTGTGGGATATAAA	GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG
GTTTCATCTGAACCGTGTGGGATATAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419268.1|582569_582917_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419286.1|601883_604832_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|274529
NC_015587.1|WP_041112953.1|598893_599109_+|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015587.1|WP_015419275.1|587203_587425_-|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|340452
NC_015587.1|WP_015419281.1|595946_596618_+|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl|CDD|273860
NC_015587.1|WP_015419285.1|601023_601803_+|vitamin-K-epoxide-reductase	unknown	unknown	gnl|CDD|214805
NC_015587.1|WP_015419277.1|589040_589472_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_158305777.1|599521_599680_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_012513705.1|582923_583070_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419272.1|584925_585756_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|274004
NC_015587.1|WP_015419282.1|596605_598897_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_015587.1|WP_015419280.1|594952_595939_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|274215
NC_015587.1|WP_015419271.1|583529_584888_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_015587.1|WP_015419278.1|592453_593251_+|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl|CDD|187783
NC_015587.1|WP_015419273.1|585850_586249_-|DUF2203-domain-containing-protein	unknown	unknown	gnl|CDD|378330
NC_015587.1|WP_015419274.1|586296_587211_-|glycosyltransferase-family-9-protein	unknown	unknown	gnl|CDD|340821
NC_015587.1|WP_015419279.1|593247_594915_+|hypothetical-protein	unknown	unknown	gnl|CDD|313005
NC_015587.1|WP_015419284.1|599794_601015_+|transposase	cas14j	-	gnl|CDD|223747
NC_015587.1|WP_015419269.1|583071_583233_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419276.1|587421_588816_-|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015587.1|WP_041112953.1|598893_599109_+|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	6e-12	40.7	0.2
NC_015587.1|WP_015419280.1|594952_595939_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	1.5e-29	97.9	4.4
NC_015587.1|WP_015419278.1|592453_593251_+|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	2.9e-35	117.2	7.9
NC_015587.1|WP_015419282.1|596605_598897_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	1.5e-79	262.9	20.8
NC_015587.1|WP_015419284.1|599794_601015_+|transposase	cas14j	-	1.2e-101	335.7	20.1
NC_015587.1|WP_015419281.1|595946_596618_+|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	4.9e-21	70.3	5.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419286.1|601883_604832_+|AAA-family-ATPase	gnl|CDD|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_015587.1|WP_041112953.1|598893_599109_+|Dna2/Cas4-domain-containing-protein	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.89549e-14
NC_015587.1|WP_015419279.1|593247_594915_+|hypothetical-protein	gnl|CDD|313005	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry describes a conserved region of about 65 amino acids from an otherwise highly divergent protein found in a minority of CRISPR-associated protein regions. This region features two motifs of CXXC.	0.000795149
NC_015587.1|WP_015419285.1|601023_601803_+|vitamin-K-epoxide-reductase	gnl|CDD|214805	smart00756, VKc, Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.	2.11756e-05
NC_015587.1|WP_015419281.1|595946_596618_+|CRISPR-associated-protein-Cas5	gnl|CDD|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.42483e-13
NC_015587.1|WP_015419272.1|584925_585756_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|274004	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.	5.66287e-13
NC_015587.1|WP_015419274.1|586296_587211_-|glycosyltransferase-family-9-protein	gnl|CDD|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	3.24711e-41
NC_015587.1|WP_015419280.1|594952_595939_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	7.11094e-18
NC_015587.1|WP_015419271.1|583529_584888_-|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.62965e-11
NC_015587.1|WP_015419278.1|592453_593251_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.29787e-28
NC_015587.1|WP_015419273.1|585850_586249_-|DUF2203-domain-containing-protein	gnl|CDD|378330	pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203). This domain, found in various hypothetical bacterial proteins, has no known function.	3.11931e-41
NC_015587.1|WP_015419282.1|596605_598897_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.44988e-66
NC_015587.1|WP_015419275.1|587203_587425_-|MoaD/ThiS-family-protein	gnl|CDD|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	9.05667e-15
NC_015587.1|WP_015419284.1|599794_601015_+|transposase	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.97424e-61
NC_015587.1|WP_015419276.1|587421_588816_-|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0

Protein sequences

>NC_015587.1|WP_015419277.1|589040_589472_-|hypothetical-protein
MLKRLRNQIDGGNQQHSATINESQAFLIHSLMDRVLKQGDTIAEMETTLVDIKNSLDAFKSVIQKVETNTSLSIPNLLKPIQNQTDQIPALKKDMLELQNKVEILQTSLEQFKIEQYERMTNGRGKSTCKSWQTCLFFSSKIH
>NC_015587.1|WP_015419276.1|587421_588816_-|glutamate--tRNA-ligase
MVRTRFAPSPTGYMHLGNARTGIFSYLFARHQNGTFVLRIEDTDRERSTKEFENSIIEDLKWLGIEWDEFYRQSERFDIYKEYAKKLIDSGHAYYCFCKEEDIEKQREEAYAQGKAYRYPGTCRHLSKEDVENRLKSGESYVIRFKVPDGQIVSFEDMIRGNISINVDDFGDFVIVRSDGSPVYNFVVVIDDALMKITHVIRGEDHISNTPKQILIYEALGFKPPEFAHLPVILGEDRTKLSKRHGGVSVRFYKENGYCPEALFNYLCLLGWSSEKVGKEVISKEEAIKYFDIKDINLSPAVFSHDKLYWLNGVYIREILPEERLLEDLLPFLEKAYGKVDIEYLKKIVKATRKEYNTYLEAVEKLRPFFEEREPDEAAKEELSKIDRKVFELLKQEIESLEELKPENLKGVVKNIQKSTGLKPKDIWHALRIALTGSLEGIAIDVIASILPKEEVLKRLSRYI
>NC_015587.1|WP_015419275.1|587203_587425_-|MoaD/ThiS-family-protein
MKIVYFSILKERIGAFEEFEFDGTEEELKAYLCNKYPHLCDIIKSSRFAKENEYVKEFKNSDTVFAIPPVSGG
>NC_015587.1|WP_015419274.1|586296_587211_-|glycosyltransferase-family-9-protein
MAKVLVLRFSSLGDVILTSSILKPLHDAGFGVYLMTYKGFASIFEDSSFVNVLSVDKSNMFDVAKSLTPDIVIDLHKNIKTFILKNILKAKWFSYDKKSIQRRFCVWFKAFKNNIFYITDEYANAVKPIVDIKNPKPYLEVKDERLERFVSSKPVISLGVGARYHKKKYKYFKELSELFLNSGFEVRLLGDKNDDTDAKGVSYIGKLSLIDTLACIKSSKLVIANDSSITHMARAVGVKVITIFGGTHPCFGFAPKPDEGITISKDMPCKPCDLHGKGVCKYGDYPCFEIEPKLIFDKAMMLLG
>NC_015587.1|WP_015419273.1|585850_586249_-|DUF2203-domain-containing-protein
MRYFDLEEANKVLESIKPLIYDFIEKRDEIVDVIERISTIEDELEKLYMESVLEEKKQEVNELIYEISSSGAVVKGLNPLLLDFLSKKGNQDIWLCWLEGEEEISHWHGIEEGFMGRKPVELLEEDKKNRDI
>NC_015587.1|WP_015419272.1|584925_585756_-|4Fe-4S-dicluster-domain-containing-protein
MALLELLGEYPYTTKYTKVRFAFNVISAITLVIFPVFHLIKMDFANGNYYLWGHYTTNWTKPAIWAFSLWIALYTVTFVINYFYGRFFCSFICTEGWLIRGVKVLYDRLYRHGKKLQFNIIVFVLNAILTLILLNWIVDLSVLFKPYHPAFWWVSFLTYGLIALNYLAIGWLRQKWCRYFCPIGLYLEVFNQKMRWRITYDKNTCTECLECVRACPIALDPRKLKDELDTTSGLKACYMCGKCVDACMTDFRKHGEEKQALHISRVDDEGNVKDLF
>NC_015587.1|WP_015419271.1|583529_584888_-|tetratricopeptide-repeat-protein
MDKKIIYLGMVVGILALSSCERVYQKKDFQDYSNFIEYSESVIPFYLDMIQKPMYFNFHLTSPQKRKEYEDLAASYCKAKGGDFIKNGPWLYCNSSKDEYMIHETNYGFEVYAKPTKQIEEIISKGINLMKSERYQKANEVLKKAYEFAKAVNNKHLIGEAAYYIAYNDFLASKYFDIDKVFKYIRIAKENGINVSSFISDIRIYTQKILNSVLNKAKSGQKQLALRDLSRAFKIAKLLNDNNLLYTTYYYSGNFYLETGDYDKAIEYLQQAIALGQDKPNTLGLLYNLLGQAYEEKGDLPDAEKYYVESSQIALKNGDTEGAAIPLRHLGDIYYQKGNYQKAYQYHLQALMIRGYKTRKGGARYGLDLDLYSVGNDLYKMNQCKDAVVYLDEAVPYLEKFGIYDTMAKALYEDISCYKKLGNNEKAKELFNQYKSILAQQNMLSKFKSLGF
>NC_015587.1|WP_015419269.1|583071_583233_-|hypothetical-protein
MEEAIRVMNEVMAKAVTPADREWFAFLAFGVLAIMVVSFVLPIWKGGNKKGET
>NC_015587.1|WP_012513705.1|582923_583070_-|hypothetical-protein
MGGMWKYMDFLAITALVVVATMSYIIAYVVDITEQERGESPLKEQDED
>NC_015587.1|WP_015419268.1|582569_582917_-|hypothetical-protein
MRAGFRILILDKNKIKVSENLDIDKNLARAIKYIHKSQYIEASKWLLLANDSKEKYLLLSLINYALKQEDQALHYFENAKDFPYLYEENFDIYIQKPGEPVEYAETFMRSLFLPS
>NC_015587.1|WP_015419278.1|592453_593251_+|CRISPR-associated-endoribonuclease-Cas6
MRVRIVLKTDEMPLLYRHRIISLIKEALMRSDKDYKEFLYDGKITKPFTFSLMFPRTKEFVNKKVIINRNFEIEDKVALIKDGFVSLFISSSDYRFMISLFTGLKKIGSFDFSYGDCMLVDGKSINLEVKSISVLNEKVINNNFAVFKTMSPIVLEDKDDKPIIFLDDNFEKELNEIMDRILRSQIIRGFGLKRHLEFEPIKMSKQVIKHTLKDFREKTGKPIMYITGNTGIFKLSGDAEDLNMLYKIGIGNRTGQGFGMLEILK
>NC_015587.1|WP_015419279.1|593247_594915_+|hypothetical-protein
MRYSLIGSFQYDLGIYGLKKILDFFEERYATDGNFYIELDKDPEQILELVILRLVYLNEPKYFLDKIIDEFSKNKNKKIKEKFEESNEYIDDKLRKYKEKFDKLIKEQKSLKKILEEEDNLSDFIFNIFQEVLGEKVAYRKEDIKDILYSKSVRLLNNIILNFQADMRAKGEKVLEKARQKLKLSEDADKERICSFCGQKGAFSIARDRFFFAPSHFNAFWEDNPSIYACPYCIVCSFAIFESFTFLNSKNAIVIYKPNLKDLEQLNDIFLKKRLEKNNIAFGDVVENIIEYEKMKLKKDLIPEEIQVIEFNLDSKNPSIEFYILMDKTIENIIAIERQLKNLYENHRDALYGSIKQGDTEYKIDLSKEIIKYISQNQKLIYLVQRYSRLGIMAEIYRQKEDENPPIKGFYINVLLKILEMHFKLEGIGMNYYEVSKEFGQLLRGKVKKKVTKVNDETKQESIDWNTFGNRIIQLSNSFLDASKGNFQQFMETLSRVIISYDVDIDNSLLKVLDKTNYKEIATTIALSLLVRKEKDERVNNSNNSNERVVAETTL
>NC_015587.1|WP_015419280.1|594952_595939_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKLTGVFVIETGVVNRGDGIGNIATVKKITTPEGIKVFFSPVSYKRALWRSLQQNKHWKEPMVSREGGVVQRTGTVIDSEEFDFAGTMIAKPKYERESVLLIDNGISVNNYFGDMEFMTNAAIANLYGENETNIINKEIFYGIYIMPFGIEVDRIGVQEIKNLDTEINDSDSVEDKIKKVYEAFKKVDKTLKIDNIDTRIKEWVNIVESIEYDKGKKVTKIVLTKEERKRRLKDLLEGMGELSRRMEGSERNLSPCFSVFSLEYASPKYMFLIKDYINKKILEGGYLDFNELKEELENLARQEQKTLKIADYKNYRIVVNEIVKDIFG
>NC_015587.1|WP_015419281.1|595946_596618_+|CRISPR-associated-protein-Cas5
MLRLEIRQESAHFRIPTVGNPFLSYPLPPPSTVYGFLRAITNYESINFENTKLSIQGTYKGVSFEKERLVLRTKTETKTNIIPIQKLHQCSWVVHIKSSEEFENKIINALKNTSRILSLGRREDLIIDFNAFRVEEKPLDKSKKIAQKTTKIYKAWNENEDIKEGSIFRMALDTIVNENKEIIAYKQISLIYMGVKNLIPSQFYDKKQHSKTYDGEYLIEWII
>NC_015587.1|WP_015419282.1|596605_598897_+|CRISPR-associated-helicase/endonuclease-Cas3
MDNLENSLKEHLKNYFAKSDRETTLEKHINDLLDQFRIFLDRYPNVLNEREKMLLEKAIEYHDYGKLNKLFQDKMKQPTRRDDIVPHQFLSPLFLISRENKLSDKDLLIIVYSIVNHHQRGQDKYLEKIENGVNRLFTEMESCFSMFFQHIGFKGLSKDTKERYKDCLHEIATNIKPIEILNKMLYEGNEFIKTLIKVSGLLIRIDHAASGDGMEIEEPCLEGDREEIFLNYLKKLKKDNNVSLKRFQQRFKDCENTVLVADTGLGKTGLAFLWSRRKMFYVLPNRTSTNAMYETFKQIAGEDKVGLLHSTSMFYIYEKSKEDVDYTILRDHDNTKNLSKPITVNTADQLFEAVFKYPTYEKIYATLSYSDVVIDEIQGFDPAQIVPIIKQIKETTKLGTRYLIMTATLPGIVKEKFEELGFNVVVDDPDTIDKTKRHKVCFVEKSILSDIESIVKKAKENKHVLVILNTVSEAQNIYKKLRDSYENVKLLHSRFIWKDRIEREQQIQKDYKHNEGVIWVTTQLVEASLDIDFDVLFTEIAPADSLIQRMGRVHRHKKHDYLGDYNVYIYTEVDEKKTSRIYEKVLRDKSIELIKENLDKEDYLNSYSKRKIVETLYSEEFLKRINSKYLEKWKRIEEILNSKWENVFKTAQEMFRDIFTVEVVPYMFKEIVQGLEKDYYNTKKINDEQKRKIERVGILKQINDYKVPIPLYWWLSQNKSKFEYYSRLGIKILGKEFEYDSDLGIIINKETLQNSYVDEDIFI
>NC_015587.1|WP_041112953.1|598893_599109_+|Dna2/Cas4-domain-containing-protein
MNDIDAMSFDYEGLKIFRLNGTKVNYYIICKRKLWLFHRGLTMENGYNKVKLGQILQRLVNNFVSHNKISC
>NC_015587.1|WP_158305777.1|599521_599680_+|hypothetical-protein
MLKHACYSYPRTLRPTSMPRFHYSLGYRTPAGVAYKYATVNGNGIKNSEVVP
>NC_015587.1|WP_015419284.1|599794_601015_+|transposase
MLKAYKYRIYPNEEQKTIFAKTFGCVRLVWNLMLNEKLTAYNNKEKIPQVTPAKYKSEYPFLKEVDSLALANTQLNLEKAFKNYFKNPKHFGLPKFKKKKNKQAYTTNNVNNNIKIDFENGLLYLPKIKNGIKIKLHRKFEGKIKSVTIVKTTSGSYYASILVETENVKNKVKEPKNKTCGIDLGLKDFAIITNDTGIHKIEHPKYLRKAEKRLKRLQRALSRKQKDSKNFEKARKRLAIQYEYVSNARNDFLHKLSKAIIDDNQVIVVEDLNVKGMQKTDLAKPVSDSGFGTFVRYLEYKADWYGRQLIKVDRFYPSSKLCNVCGYKHNELKLSDRYWQCPICGTYHDRDINASINLYKVGLERPDFKPVEHALVDDRISKRYLKSHHVMKQEATPSIRWGSSPL
>NC_015587.1|WP_015419285.1|601023_601803_+|vitamin-K-epoxide-reductase
MSIFTKISTLGAVWVALELVMGVFHKSVCTSSGCTIAASYNRYPEFIMLTIGLLLFIVLGILKEKKKEKLLDIILIGALASEGYLQGFEIFVAHTFCIFCTVTFLIILILFIIRVKENKDILLKGLSAFLFVFVTVFLVNNPTLEIKHQYTLLYLPGCPHCEHTEKFLDDIHVKYDKINASHHKGLIMSMGIDEVPVLFVREPYGYKILVGSDSIESFFKNPTKSLQNQIANPPTSNSNSFNIGGGCQLNSIFGSNCSK
>NC_015587.1|WP_015419286.1|601883_604832_+|AAA-family-ATPase
MYSENMWSKKVKDYVEQASSIARSLGDTKVDTDHLLLALLKDQDSALSKYVSKKGVDVKELYQKLKEHINSIDNQLNKAAESEASHLIDLRSKIIQLKSDISNIQNELSEIREAKRRIEYELEKARRYDLWGARQLELELRQLNAEEEHLRKELSRVEQNLSTVFDKSAVRDFLENKISIDALVKTALKESHYKDQLKEIGISFDRYQDKVLKRFIGKTPEFGYAKNLEKVFEMAQEKAVRDGVAEVSPAHLVSALLEAKDFIAAKLLDQIIGGKSMDTEKEIQEEEKSILERYGVDLTQKARDGKLDPVIGREKEINQTIEILLRRSKNNPVLVGDPGVGKTAIVEGLAQSIVNKEVPPELQDKSIISIDMGSLVAGSKYRGEFEERVKKLLEELKEKPEAILFIDEIHTVIGAGKGEGSLDAGNMLKPALARGEIRLIGATTVDEYRKYIEKDLALERRFQPVYVDEPTIEEAIEILNGLRPKLEDFHKVKIEDDAIDSAVKLTHRYVTFRKLPDKAIDALDQACARKKLASVSVPPELQEIERKLRALEEQIINANLSGDYEKEAELKIQKVNLEKQKQDIINKLDMVDMKINQLKKKLEELEQQIIKVAEKGDYEKEAALKIEMVNTEKEIKALESKRAKTLSVTSDDIAQVVSDWTGIPLNKLKEEEMEKLLHLEEELHKRVIGQDDAVVAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTELSKALAELLFGEEDALIRLDMSEFKEEHTVSKLIGAPPGYVGYEEGGKLTEAVRRKPYSVILLDEIEKAHPRVFDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNIGSTYLLTLPLEGDSEEIKKEFEKAKEKVLGELKHFFRPEFLNRIDDIIVFKPLTMEQLIQIVDLLLDDLNKRLKDKGIKVELTLEAKKELARRGYEPAFGARPLKRTVQKLLETPLANKMIKGEIKENSTVKVDIKDGEFVFETT

Crispr_ID: NC_015587_5

• CRISPR_ID: NC_015587_5
• CRISPR_location: 928075-929220
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 17 spacers

Consensus repeat of NC_015587_5

Consensus_repeat	Method
CTTCTTAACCCACACGGTTCAGATGAAAC	CRISPRCasFinder
CTTCTTAACCCACACGGTTCAGATGAAAC	CRT
GTTTCATCTGAACCGTGTGGGTTAAGAAG	PILER-CR

spacers of NC_015587_5

>5.1|928104|36|NC_015587|CRISPRCasFinder,CRT
TATTATTACACACCTTCCACAACACATTTAAAGCAA
>5.2|928169|36|NC_015587|CRISPRCasFinder,CRT
AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG
>5.3|928234|37|NC_015587|CRISPRCasFinder,CRT
TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG
>5.4|928300|37|NC_015587|CRISPRCasFinder,CRT
AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT
>5.5|928366|38|NC_015587|CRISPRCasFinder,CRT
ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA
>5.6|928433|34|NC_015587|CRISPRCasFinder,CRT
TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT
>5.7|928496|37|NC_015587|CRISPRCasFinder,CRT
TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT
>5.8|928562|35|NC_015587|CRISPRCasFinder,CRT
TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG
>5.9|928626|37|NC_015587|CRISPRCasFinder,CRT
CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT
>5.10|928692|37|NC_015587|CRISPRCasFinder,CRT
AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC
>5.11|928758|36|NC_015587|CRISPRCasFinder,CRT
AGAATCATTAGGATTGTTTGCATTTGATATACAAGA
>5.12|928823|37|NC_015587|CRISPRCasFinder,CRT
ACACTTATACACTCTACACCAAAGCATAAACTCTGGA
>5.13|928889|36|NC_015587|CRISPRCasFinder,CRT
CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA
>5.14|928954|42|NC_015587|CRISPRCasFinder,CRT
TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG
>5.15|929025|36|NC_015587|CRISPRCasFinder,CRT
ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA
>5.16|929090|38|NC_015587|CRISPRCasFinder,CRT
GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG
>5.17|929157|35|NC_015587|CRISPRCasFinder,CRT
CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA
>5.18|928105|36|NC_015587|PILER-CR
TATTATTACACACCTTCCACAACACATTTAAAGCAA
>5.19|928170|36|NC_015587|PILER-CR
AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG
>5.20|928235|37|NC_015587|PILER-CR
TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG
>5.21|928301|37|NC_015587|PILER-CR
AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT
>5.22|928367|38|NC_015587|PILER-CR
ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA
>5.23|928434|34|NC_015587|PILER-CR
TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT
>5.24|928497|37|NC_015587|PILER-CR
TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT
>5.25|928563|35|NC_015587|PILER-CR
TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG
>5.26|928627|37|NC_015587|PILER-CR
CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT
>5.27|928693|37|NC_015587|PILER-CR
AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC
>5.28|928759|36|NC_015587|PILER-CR
AGAATCATTAGGATTGTTTGCATTTGATATACAAGA
>5.29|928824|37|NC_015587|PILER-CR
ACACTTATACACTCTACACCAAAGCATAAACTCTGGA
>5.30|928890|36|NC_015587|PILER-CR
CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA
>5.31|928955|42|NC_015587|PILER-CR
TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG
>5.32|929026|36|NC_015587|PILER-CR
ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA
>5.33|929091|38|NC_015587|PILER-CR
GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG
>5.34|929158|35|NC_015587|PILER-CR
CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA

CRISPR arrays and Neighbor proteins around NC_015587_5

CRISPR arrays

The CRISPR arrays of NC_015587_5

>merge|NC_015587|5|928075-929220|CRISPRCasFinder,CRT,PILER-CR
TTTCTTAACCCACACGGTTCAGATGAAACTATTATTACACACCTTCCACAACACATTTAAAGCAACTTCTTAACCCACACGGTTCAGATGAAACAAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAGCTTCTTAACCCACACGGTTCAGATGAAACTGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAGCTTCTTAACCCACACGGTTCAGATGAAACAGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACTCTTCTTAACCCACACGGTTCAGATGAAACACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTACTTCTTAACCCACACGGTTCAGATGAAACTCAGTCCATCATTGTCTGTGACGCTAAAATGTGTCTTCTTAACCCACACGGTTCAGATGAAACTGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCATCTTCTTAACCCACACGGTTCAGATGAAACTTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGGCTTCTTAACCCACACGGTTCAGATGAAACCGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGATCTTCTTAACCCACACGGTTCAGATGAAACAGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGCCTTCTTAACCCACACGGTTCAGATGAAACAGAATCATTAGGATTGTTTGCATTTGATATACAAGACTTCTTAACCCACACGGTTCAGATGAAACACACTTATACACTCTACACCAAAGCATAAACTCTGGACTTCTTAACCCACACGGTTCAGATGAAACCAAGTTTTGAATTTCAAACACCATTCCCTAATTTAACTTCTTAACCCACACGGTTCAGATGAAACTATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGGCTTCTTAACCCACACGGTTCAGATGAAACATATCATTTTTATAGATTAGAGTCAATATTGTAAAACTTCTTAACCCACACGGTTCAGATGAAACGCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGGCTTCTTAACCCACACGGTTCAGATGAAACCTTCCAAAGATACAGTTTAAATTTGTAGATGCCAACTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|5|5|928075-929220|CRISPRCasFinder
TTTCTTAACCCACACGGTTCAGATGAAAC	TATTATTACACACCTTCCACAACACATTTAAAGCAA
CTTCTTAACCCACACGGTTCAGATGAAAC	AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG
CTTCTTAACCCACACGGTTCAGATGAAAC	AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT
CTTCTTAACCCACACGGTTCAGATGAAAC	ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA
CTTCTTAACCCACACGGTTCAGATGAAAC	TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT
CTTCTTAACCCACACGGTTCAGATGAAAC	TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG
CTTCTTAACCCACACGGTTCAGATGAAAC	CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT
CTTCTTAACCCACACGGTTCAGATGAAAC	AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC
CTTCTTAACCCACACGGTTCAGATGAAAC	AGAATCATTAGGATTGTTTGCATTTGATATACAAGA
CTTCTTAACCCACACGGTTCAGATGAAAC	ACACTTATACACTCTACACCAAAGCATAAACTCTGGA
CTTCTTAACCCACACGGTTCAGATGAAAC	CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA
CTTCTTAACCCACACGGTTCAGATGAAAC	TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG
CTTCTTAACCCACACGGTTCAGATGAAAC	ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA
CTTCTTAACCCACACGGTTCAGATGAAAC	GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG
CTTCTTAACCCACACGGTTCAGATGAAAC	CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA
CTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|5|3|928075-929220|CRT
TTTCTTAACCCACACGGTTCAGATGAAAC	TATTATTACACACCTTCCACAACACATTTAAAGCAA
CTTCTTAACCCACACGGTTCAGATGAAAC	AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG
CTTCTTAACCCACACGGTTCAGATGAAAC	AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT
CTTCTTAACCCACACGGTTCAGATGAAAC	ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA
CTTCTTAACCCACACGGTTCAGATGAAAC	TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT
CTTCTTAACCCACACGGTTCAGATGAAAC	TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG
CTTCTTAACCCACACGGTTCAGATGAAAC	CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT
CTTCTTAACCCACACGGTTCAGATGAAAC	AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC
CTTCTTAACCCACACGGTTCAGATGAAAC	AGAATCATTAGGATTGTTTGCATTTGATATACAAGA
CTTCTTAACCCACACGGTTCAGATGAAAC	ACACTTATACACTCTACACCAAAGCATAAACTCTGGA
CTTCTTAACCCACACGGTTCAGATGAAAC	CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA
CTTCTTAACCCACACGGTTCAGATGAAAC	TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG
CTTCTTAACCCACACGGTTCAGATGAAAC	ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA
CTTCTTAACCCACACGGTTCAGATGAAAC	GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG
CTTCTTAACCCACACGGTTCAGATGAAAC	CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA
CTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|5|4|928076-929220|PILER-CR
TTCTTAACCCACACGGTTCAGATGAAACT	ATTATTACACACCTTCCACAACACATTTAAAGCAAC
TTCTTAACCCACACGGTTCAGATGAAACA	AATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAGC
TTCTTAACCCACACGGTTCAGATGAAACT	GTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAGC
TTCTTAACCCACACGGTTCAGATGAAACA	GTCCAATTTATAAAGTCTTGCACTGCTTGATTGACTC
TTCTTAACCCACACGGTTCAGATGAAACA	CTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTAC
TTCTTAACCCACACGGTTCAGATGAAACT	CAGTCCATCATTGTCTGTGACGCTAAAATGTGTC
TTCTTAACCCACACGGTTCAGATGAAACT	GTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCATC
TTCTTAACCCACACGGTTCAGATGAAACT	TGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGGC
TTCTTAACCCACACGGTTCAGATGAAACC	GTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGATC
TTCTTAACCCACACGGTTCAGATGAAACA	GCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGCC
TTCTTAACCCACACGGTTCAGATGAAACA	GAATCATTAGGATTGTTTGCATTTGATATACAAGAC
TTCTTAACCCACACGGTTCAGATGAAACA	CACTTATACACTCTACACCAAAGCATAAACTCTGGAC
TTCTTAACCCACACGGTTCAGATGAAACC	AAGTTTTGAATTTCAAACACCATTCCCTAATTTAAC
TTCTTAACCCACACGGTTCAGATGAAACT	ATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGGC
TTCTTAACCCACACGGTTCAGATGAAACA	TATCATTTTTATAGATTAGAGTCAATATTGTAAAAC
TTCTTAACCCACACGGTTCAGATGAAACG	CGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGGC
TTCTTAACCCACACGGTTCAGATGAAACC	TTCCAAAGATACAGTTTAAATTTGTAGATGCCAAC
TTCTTAACCCACACGGTTCAGATGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B	unknown	unknown	gnl|CDD|223783
NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13	unknown	unknown	gnl|CDD|181703
NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase	unknown	unknown	gnl|CDD|223858
NC_015587.1|WP_015419585.1|919770_920766_+|biotin-synthase-BioB	unknown	unknown	gnl|CDD|273075
NC_015587.1|WP_015419595.1|932785_933091_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9	unknown	unknown	gnl|CDD|178888
NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein	unknown	unknown	gnl|CDD|379590
NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl|CDD|223784
NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP	unknown	unknown	gnl|CDD|272878
NC_015587.1|WP_015419599.1|937888_938065_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2	unknown	unknown	gnl|CDD|235401
NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl|CDD|234761
NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase	unknown	unknown	gnl|CDD|234835
NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl|CDD|368098
NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI	unknown	unknown	gnl|CDD|226025
NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein	unknown	unknown	gnl|CDD|376651
NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.99425e-129
NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.39642e-46
NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B	gnl|CDD|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	2.57624e-08
NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13	gnl|CDD|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.69594e-75
NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase	gnl|CDD|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	1.98987e-109
NC_015587.1|WP_015419585.1|919770_920766_+|biotin-synthase-BioB	gnl|CDD|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	3.05733e-146
NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9	gnl|CDD|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	9.2855e-59
NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein	gnl|CDD|379590	pfam14385, DUF4416, Domain of unknown function (DUF4416). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved DPG sequence motif.	7.84356e-54
NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta	gnl|CDD|223784	COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion].	4.81744e-23
NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP	gnl|CDD|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.72098e-90
NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2	gnl|CDD|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl|CDD|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	1.05474e-147
NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase	gnl|CDD|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	6.89813e-159
NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl|CDD|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.12385e-68
NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI	gnl|CDD|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	5.10601e-64
NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.45437e-60
NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.93602e-28

Protein sequences

>NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13
MDSVKTIRPKPQDIKREYWIIDAKDMVLGRLAAKCASILRGKHKPIYQPDVDCGDFVIVINSKLVKTTGNKLRDKVYKFHTNHPGGLKEKSLGFMLETNPNQVIMLAVKRMLPKNRLGHRILKRLKVYETDKHPHIAQNPKPLK
>NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9
MATVVRNFKVLEDNSYHGVGKRKDSVARVWLVKNANGFIVKARDSQKEYDMREYLQRDSSFAKVLLPFNITNTNGKFGVYAIVNGGGLSAQAEAIMYGIADALLTYNPNFRTTLKKAGLLKVDARIKERKKYGKMGARAKFRWSKR
>NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MEQEIIKVGIAGFTGYTGLELLRILSKHPKVKITSLSSSTHYDKYLYDVLDFANIENIKITKELEDVDVVFLALPHEASLDQVPFYASKNVKIIDLSGAFRLKDKNIFKEYYNLEYKLEHESIVKEVVYGLPELFREGIRKANIVSNPGCYPTAVILGVLPIVKNTSYRKPIIVNAVSGVSGAGAKLKQEFHFPYMEQNAFYYGIGKHRHTPEMSLYLGLEVQFSPMVIPASRGMIANIKLFDIEEIDFKALYEDFYKDEPFVKLTDKPPHTKWVIGTNMCYIYIYYHKSLKTLEIISAIDNLGKGASSQAVQNMNIMFGLEETLGIDTFPVIP
>NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein
MKALPIFAILYNKNYEENLYTVLEELGDFGRFCISEHFYFENLQKYYSKEMEKPLFKVYLYAKNLFEDTDILSLKLKTMEIEKLFSINSKRTVNIDPGYINKQHLILASSKERGARIHIGKNIFLEMEYIYIYKDFKPFYWTYQDYRYEKVKLFFKMARDYYLSVI
>NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein
MEQIKWLLSNLKPYWALVSLVIFGSILEGLGTSFMTYLVKRIMDDVFILKESNKLYMILYLFAAAAVIIQIGFFLRNFLMNMVSEKLLMDFREKMFSSLLYSKVDFFINHPSGDIISRFNNDINAIKNILIDYMLSLIKEPITVLLLLGVLIYRDIYLTVIIIFAFPIISYSVKYFGTKRAKYVKLNQERLGIINQHVTQLISGIENIKIFGAENKFLERFVQANKNLFKAGIKTIFYTVMNSIFNQSTGYIVFGLVLLYGGYRIVHGYTSAGNFISYITALLLIQMPIMETQKGFMNMRSSIPLVKRVQEMLLLQKEKDGTIDINNLLVPIVMKNVYVTIDSKEILKDINLTINPGEKIGIVGPTGAGKSTLLDILPKLVSYKGDVYIKDKSLEEITNKSIRSKIAFASQHVFIFNDTVRNNLLIANPNASEELLIKAIKLAKAEFLFTLKNGLDTVLGEYGYTVSGGERQRIAIARIFLTNPDIILLDEITSALDVHTEQAVISNIFEIFKDKTILIVAHRLSNIINCDRILYIEDGRILEEGTFEELMRKQGNFYTLYQKSR
>NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase
MKAHFLDVWDITFDEAKRIIDLSFDFKYNNFNPKSLQNLNIALLFSKPSTRTRVSFEVGIKELGGNPIFLQESSLQVSRGEDASDSARTLSRYVDGVVVRTGSHQWLLEFAQYSVIPVINALTDYTHPCQAISDIFTLFEAFREKIKNIKVLYIGDGNNMANALISAFAIFGLSLTVCTPKELRPDEENLKRALEVSKQTGAEIILEEDPIKAAKDKDVIYTDVWISMNDEGSKDHKINLLKDYQVNAKLLSYAKKDVRVMHCLPAKKGQEITKEVFEEHADFIFNQAENRLHTQKALMYLMFNGTNQMASI
>NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP
MIHTVLAFLILISILIVFHEFGHFIFAKLFGVKVEVFSVGFGNPIFKKKIGETEYQIAYIPMGGYVKLYGEEEEASSKDPKAFSSKAPWQKILIAAAGPLFNLIIAFIGFTLSFYIGIHQPAYIEEPVKVGYIAKKSPFYKAGIRPGDTIIKIDNLPIKTWKDLYTAEIKAVGESSKVVFERNGHIYTTTITLGKILNKDSIGILPEIAPVVGGIIKNSPASQIGLKEGDKILAVKMSDMPTAIPIKNWYELTDYMRKDKGNPITLVIERSNTLLVKDVIPKYSAKLKEYYIGIYPETTYVLKRYPINEAMIQAIRKIKELTILSIDSIKALVTMHASVLNLSGPISIAKMSGQAAEGGLGEFLGFMAFVSLQLAIINILPIPMLDGGLIVLFLIEAIIRRPLSEKFKEYWQKIGIAFVVSLSAVAILSDIIRLFTGV
>NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein
MIERIKVKTAKHTSVVNITQRIREIVEASFIDNGLCIVYVPHTTAAVFINEGADPDVVKDILNTLDRLIPWTNDYSHMEGNAAAHIKSSIIGNSRIIPILDGRLMLGKWEAVFLAEFDGPREREVVVSIVRSS
>NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase
MQIEYIEQKLLELCKEAIAQDRIPVSAVVTKNDEIVSWAFNGIKSIEHAEIIALEKAMNVLNAKRLDGCNIYVSLEPCPMCTYAISLARIEKVYFFSLDDKKGAILSNANIIDHFELKLKWEYKKNSDFENMLKGYFKNKRRLTVLK
>NC_015587.1|WP_015419585.1|919770_920766_+|biotin-synthase-BioB
MEQVFFDIYQKAKKDEISKEEALFILKAEDKYIPLIVYLASKLKDEFFDSTKFEFCSIINAKSGACSEDCKFCAQSKFYKTPINIYKLVDKEELVEGALRGVEFGANRYCMVLSARAASDEEVEKLCEAVQEIKAQNIPINVCVSAGTIGLESLLKLKEAGVTRINHNLETSENYFPNIVSTHTWRERLETIKNVQKAGLSTCSGAIFGLGETDEDRVDLAFVYKELGVDSIPLNFLMPIPNTPLENNKPLRALDALKIIAMFRFTNKSAELRLCGGREQTLGDFHGMAAFMTNALMAGGYLTRAGRDIKKDYKMLEDMNLERLTSEEVCK
>NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MDIQPHDSFFKQIFSDPKRVKLLLDIFAKDIGQEIHSITPVNTEKFSSKSQKFMLDLLFSCKVEDQDAYIRIVLEHKSYLDKELPIQLLYYNAAIWEEAIKEKDYYPPIINIVFYHGKGEWNVPTSLPIVKNTKLEKYASKLNYILIDLNRISDEDIISKAHQDLCTQWAMLAMKHIFDSIKGFIKVLELIADYIKTHDYIEKSHCIFLTIDYIVSVKNNPEEVESILKELTGGDEKIMTLTEKWMMEGLKKGRQEGLQEGLEKGSLKTKKDDIKSAVLIKFGVLPKELEEKIENTDDIQILDDMFKKVILAGKIEEIL
>NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase
MRIVLELLKENILNNISQIYNSVNKPIIAVVKANAYGMGSAEVSKVLDDNPYVKSFAVACIEEAVELREVDIKKPILVLGGVLDLKDVEYLKYYKLTPVISSTYQFDMIKDAGIDFHVKFDTGMGRLGFFELQEDIANHPNLKGIMTHLASPLDKEYSAFQIQRFKNIVKSLKRNSIEIHYQSSAGLMYEKDFTTAIRIGLAMYGEKPYEGFDIPIKPIYKVKAKVISLKNFKKGDKISYGGTYTLSKDATIGVVSMGYADGIPKSLANKWYFDFNGVKLPMVGAVTMDMTMFELPDEVNIKIGDYVDFVNEKQTFSMASKIVKTIPYELMCRMGKRVKRVVV
>NC_015587.1|WP_015419595.1|932785_933091_-|hypothetical-protein
MNRNMLILFLATLFLLNPSFALDRCDVYGLFLETCANFGQKHDFSACGDLENELSKIIKSNSKSTKLFIEACTTACKGAVLNKGISKFGVEAFVKMCKVIK
>NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI
MKIGLIAGAGELPEVFRKNAIKNKEEVFTVGAKDITTIEADVYLPVGKISKLIELLKEKKVNKIVMLGKFEHKLSLDPRNYDIKAVSILTSLKDKTPSSIIRAFMDFMQEEGFSFLDPKPYLFELLIEKEGLLNDVELDKNVVEDIEFGAKIAKNIADMDIGQTVVIKQKAVVAVEAMEGTDKTILRAFDIAGKGTVVIKSARTNQDFRIDVPTVGIDTLNTLKEVKAKAIAIQKGKVYVLEKEKFIKMANRFGIGVYAYE
>NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase
MLWFKNISSFRLKLITLFSVLVILSMGFVAISTSFVLHKILINYMYTYLNNQAKPVIEFYSIYSNDLAKEAKDMIDDITSENITAVVLSSNGGVLSVGSFEDSEKPIPINNYILSLFLKKPMGTFEENGEDYAYIVKKTKDVYFVVIGRLREINKVIKQFIYMLTVLTIGVVVFSVLTIYTILNKILKQLDDITRISENIYAGNMDIDIPDSSSSDEFGIMFRAFKNMVEKLNNTIKIQKNFIADVSHEFKTPISYIKAQIEFILTGVYQEDEMFDVLKKVYKQTDVLSKFTEDLLALARLESNIPISKTEVDVVSLLNQLKEEFSIQNRNIILDIKSQDTWIADPHYLKIAVKNLLENAIKYSDKDIILGYTGDCIYVKDFGPGIPEENLPYIFERFYRVSKDKRGLGLGLSIVKAVAQVHNFNLKVEVKDGTTFYICK
>NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2
MSKKKSGIRLKDFVETYGLEDRVDEIKSVLREWRSKNISQVTQYIEEEDKDFLIDYYELSGAVLVEETPKIVAKEVEKEHVKSTKSQKPTSKRPQQKPIQASKKQEPPARKPEIKQETKDQVVIPEPKKEEQSSAPVLLETSKPVESKPVAEEKPEEKIVEEKMEQDKPIEKPEEHMHKVVEENIAKEQPKQEPLTEVKPIEEKQSVQEKVKEEPIQVKAEKQEKVETKQESPKAPSQKPKKEPQKPSPPKEEAKKEEEIKIIEIPEVISVREFAELLGVGPNQIIKELFQEGILVTINQNIDPNLAVKIAEKFGYLAEIKKPEVVIEEEEPEEEDPSKLKPRPPVVVVMGHVDHGKTTLLDTIRKTNVAAREKGGITQHIGASMVKTKDGRLITFLDTPGHEAFTSLRARGAQVTDVAILVVAADDGVMPQTIEAINHAKAFNVPIVVAVNKIDKPGADPSRVRRELSEVGIIPEEWGGDTVFVDVSAKTGQGVDELLDMVMLVADMLELKANPDKKAKGTIIESRLDKQKGPVATVLVTEGTLKVGDIFVAGATYGRVRAMMDSYGHKVKQATPSMAVEIIGFEEVPEAGDVLKVVDSEKQAKELAQIRKTAKEQDKNKELGISLDDIFKKIKEGEVKELKLIVKADAVGSLEAIKKSLSDIKTSEVSIKVIHEGVGSITEGDVMLAKAAKAIILGFNVRPDAKAKEAAEREKVDIRVYGIIYELLDDVKKAISGMLSPVKKEITLGLAEVRATFKVKGAGTVAGCYVLEGKIVRNQRARLIRNGVVIYDGKIESLKRFKEDVNEVARGYECGIKLENYNDIKVKDEIECYEIKEEKQTL
>NC_015587.1|WP_015419599.1|937888_938065_-|hypothetical-protein
MAYERLIGSLKQESKVLVSEEIRRRKALLDKLKSSPKSDFEDIYREQKEKLENKQKLM
>NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha
MTLAYDDALEILKSQLQSFETDIKMEEVGVVYAVGDGVARAYGLDNVMANELLEFDSGEAGLAFNLEEDNVGIIILGSESGIKEGSIVKRTGRILDAPVGEELVGRVIDPLGNPLDGKGPINAKQRSPVEKIAPGIVKRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRATGKTTVAIDTILNQRDTDVYCIYVAIGQKKSTTARIIELLEREGAMKYTTVVVASATDPAPLQYLAPFTGCTIGEYFRDNSKHALIVYDDLSKHAEAYRQLSLLVRRPPGREAYPGDVFYLHSRLLERAAKLNDELGAGSLTALPIIETKAGDVSAYIPTNVISITDGQIYLEPDLFNKGIRPAINVGLSVSRVGGSAQIKAMKQVAGTLRLDLAQFRELEAFMQFASDLDKATQDTINRGLRLVELLKQGPYSPIPVEKQVIAIYAGTNGYLDDIPVSSVRKFEMELYGFLDANFKDLLDELKTKKAIDDSVKAKLKTALDKFKASFIP
>NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta
MKVNKELARKLAKKIISSVPKDKESLSAVSDFLGLLGVLYRKEPKFRDFVLSPFVPNEQKKLFIKSLIQKGNIPKEIEFFVDELIDLNLLRIVDEIKRLFDYESEKILSIYKGKLIFAKEPAKELVDEIIQRVEKVLNRKIEPEISVNEALIGGFELRLSGLVLDTSVRGVLQNLSNKVKSL
>NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B
MSNYVFENIWKAVNVILFFALVYKFAGKQIKDMFEKAYKSLVSQVEEPLSKLLSNREAVSLAKKEVEEARKKYEKTLENQRILAKAQYDEILSHAKIVAENIEKMGKEMVEVEANRLKSQLISGLSSSLISKAEVKLKEAFKDEKVEISYIKSRLERLGK

Crispr_ID: NC_015587_6

• CRISPR_ID: NC_015587_6
• CRISPR_location: 930815-931239
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 6 spacers

Consensus repeat of NC_015587_6

Consensus_repeat	Method
GTTTCATCTGAACCGTGTGGGTTAAGAAG	PILER-CR
CTTCTTAACCCACACGGTTCAGATGAAAC	CRISPRCasFinder
CTTCTTAACCCACACGGTTCAGATGAAAC	CRT

spacers of NC_015587_6

>6.1|930844|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TGATTATGAGTTATTGACAAATGATACGGTACAATG
>6.2|930909|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA
>6.3|930975|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT
>6.4|931043|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG
>6.5|931109|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT
>6.6|931174|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TCTTACCTACTATTTGACCTTCATACATAATAAAGCG

CRISPR arrays and Neighbor proteins around NC_015587_6

CRISPR arrays

The CRISPR arrays of NC_015587_6

>merge|NC_015587|6|930815-931239|PILER-CR,CRISPRCasFinder,CRT
CTTCTTAACCCACACGGTTCAGATGAAACTGATTATGAGTTATTGACAAATGATACGGTACAATGCTTCTTAACCCACACGGTTCAGATGAAACTTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAACTTCTTAACCCACACGGTTCAGATGAAACTGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGATCTTCTTAACCCAAACGGTTCAGATGAAACGAATTGAAAAAGGTACCACACAAGTGGTACCTCATTGCTTCTTAACCCACACGGTTCAGATGAAACAAGAGGATAACTCTTTCCAGCAATCCACACTACCGTCTTCTTAACCCACACGGTTCAGATGAAACTCTTACCTACTATTTGACCTTCATACATAATAAAGCGCTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|6|5|930815-931239|PILER-CR
CTTCTTAACCCACACGGTTCAGATGAAAC	TGATTATGAGTTATTGACAAATGATACGGTACAATG
CTTCTTAACCCACACGGTTCAGATGAAAC	TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT
CTTCTTAACCCAAACGGTTCAGATGAAAC	GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG
CTTCTTAACCCACACGGTTCAGATGAAAC	AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT
CTTCTTAACCCACACGGTTCAGATGAAAC	TCTTACCTACTATTTGACCTTCATACATAATAAAGCG
CTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|6|6|930815-931239|CRISPRCasFinder
CTTCTTAACCCACACGGTTCAGATGAAAC	TGATTATGAGTTATTGACAAATGATACGGTACAATG
CTTCTTAACCCACACGGTTCAGATGAAAC	TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT
CTTCTTAACCCAAACGGTTCAGATGAAAC	GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG
CTTCTTAACCCACACGGTTCAGATGAAAC	AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT
CTTCTTAACCCACACGGTTCAGATGAAAC	TCTTACCTACTATTTGACCTTCATACATAATAAAGCG
CTTCTTAACCCACACGGTTCAGATGAAAC

>NC_015587|6|4|930815-931239|CRT
CTTCTTAACCCACACGGTTCAGATGAAAC	TGATTATGAGTTATTGACAAATGATACGGTACAATG
CTTCTTAACCCACACGGTTCAGATGAAAC	TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA
CTTCTTAACCCACACGGTTCAGATGAAAC	TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT
CTTCTTAACCCAAACGGTTCAGATGAAAC	GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG
CTTCTTAACCCACACGGTTCAGATGAAAC	AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT
CTTCTTAACCCACACGGTTCAGATGAAAC	TCTTACCTACTATTTGACCTTCATACATAATAAAGCG
CTTCTTAACCCACACGGTTCAGATGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B	unknown	unknown	gnl|CDD|223783
NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13	unknown	unknown	gnl|CDD|181703
NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase	unknown	unknown	gnl|CDD|223858
NC_015587.1|WP_015419603.1|940842_941271_-|ATP-synthase-F0-subunit-B	unknown	unknown	gnl|CDD|349951
NC_015587.1|WP_015419595.1|932785_933091_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9	unknown	unknown	gnl|CDD|178888
NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein	unknown	unknown	gnl|CDD|379590
NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl|CDD|223784
NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP	unknown	unknown	gnl|CDD|272878
NC_015587.1|WP_015419599.1|937888_938065_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2	unknown	unknown	gnl|CDD|235401
NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl|CDD|234761
NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase	unknown	unknown	gnl|CDD|234835
NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl|CDD|368098
NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI	unknown	unknown	gnl|CDD|226025
NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein	unknown	unknown	gnl|CDD|376651
NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.99425e-129
NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.39642e-46
NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B	gnl|CDD|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	2.57624e-08
NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13	gnl|CDD|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.69594e-75
NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase	gnl|CDD|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	1.98987e-109
NC_015587.1|WP_015419603.1|940842_941271_-|ATP-synthase-F0-subunit-B	gnl|CDD|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	1.8489e-16
NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9	gnl|CDD|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	9.2855e-59
NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein	gnl|CDD|379590	pfam14385, DUF4416, Domain of unknown function (DUF4416). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved DPG sequence motif.	7.84356e-54
NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta	gnl|CDD|223784	COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion].	4.81744e-23
NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP	gnl|CDD|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.72098e-90
NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2	gnl|CDD|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl|CDD|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	1.05474e-147
NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase	gnl|CDD|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	6.89813e-159
NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl|CDD|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.12385e-68
NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI	gnl|CDD|226025	COG3494, COG3494, Uncharacterized protein conserved in bacteria [Function unknown].	5.10601e-64
NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.45437e-60
NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.93602e-28

Protein sequences

>NC_015587.1|WP_015419593.1|929806_930766_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MDIQPHDSFFKQIFSDPKRVKLLLDIFAKDIGQEIHSITPVNTEKFSSKSQKFMLDLLFSCKVEDQDAYIRIVLEHKSYLDKELPIQLLYYNAAIWEEAIKEKDYYPPIINIVFYHGKGEWNVPTSLPIVKNTKLEKYASKLNYILIDLNRISDEDIISKAHQDLCTQWAMLAMKHIFDSIKGFIKVLELIADYIKTHDYIEKSHCIFLTIDYIVSVKNNPEEVESILKELTGGDEKIMTLTEKWMMEGLKKGRQEGLQEGLEKGSLKTKKDDIKSAVLIKFGVLPKELEEKIENTDDIQILDDMFKKVILAGKIEEIL
>NC_015587.1|WP_012514049.1|927475_927910_-|50S-ribosomal-protein-L13
MDSVKTIRPKPQDIKREYWIIDAKDMVLGRLAAKCASILRGKHKPIYQPDVDCGDFVIVINSKLVKTTGNKLRDKVYKFHTNHPGGLKEKSLGFMLETNPNQVIMLAVKRMLPKNRLGHRILKRLKVYETDKHPHIAQNPKPLK
>NC_015587.1|WP_012514048.1|927022_927463_-|30S-ribosomal-protein-S9
MATVVRNFKVLEDNSYHGVGKRKDSVARVWLVKNANGFIVKARDSQKEYDMREYLQRDSSFAKVLLPFNITNTNGKFGVYAIVNGGGLSAQAEAIMYGIADALLTYNPNFRTTLKKAGLLKVDARIKERKKYGKMGARAKFRWSKR
>NC_015587.1|WP_015419592.1|926033_927038_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MEQEIIKVGIAGFTGYTGLELLRILSKHPKVKITSLSSSTHYDKYLYDVLDFANIENIKITKELEDVDVVFLALPHEASLDQVPFYASKNVKIIDLSGAFRLKDKNIFKEYYNLEYKLEHESIVKEVVYGLPELFREGIRKANIVSNPGCYPTAVILGVLPIVKNTSYRKPIIVNAVSGVSGAGAKLKQEFHFPYMEQNAFYYGIGKHRHTPEMSLYLGLEVQFSPMVIPASRGMIANIKLFDIEEIDFKALYEDFYKDEPFVKLTDKPPHTKWVIGTNMCYIYIYYHKSLKTLEIISAIDNLGKGASSQAVQNMNIMFGLEETLGIDTFPVIP
>NC_015587.1|WP_015419591.1|925536_926037_-|DUF4416-family-protein
MKALPIFAILYNKNYEENLYTVLEELGDFGRFCISEHFYFENLQKYYSKEMEKPLFKVYLYAKNLFEDTDILSLKLKTMEIEKLFSINSKRTVNIDPGYINKQHLILASSKERGARIHIGKNIFLEMEYIYIYKDFKPFYWTYQDYRYEKVKLFFKMARDYYLSVI
>NC_015587.1|WP_015419590.1|923846_925544_+|ABC-transporter-ATP-binding-protein
MEQIKWLLSNLKPYWALVSLVIFGSILEGLGTSFMTYLVKRIMDDVFILKESNKLYMILYLFAAAAVIIQIGFFLRNFLMNMVSEKLLMDFREKMFSSLLYSKVDFFINHPSGDIISRFNNDINAIKNILIDYMLSLIKEPITVLLLLGVLIYRDIYLTVIIIFAFPIISYSVKYFGTKRAKYVKLNQERLGIINQHVTQLISGIENIKIFGAENKFLERFVQANKNLFKAGIKTIFYTVMNSIFNQSTGYIVFGLVLLYGGYRIVHGYTSAGNFISYITALLLIQMPIMETQKGFMNMRSSIPLVKRVQEMLLLQKEKDGTIDINNLLVPIVMKNVYVTIDSKEILKDINLTINPGEKIGIVGPTGAGKSTLLDILPKLVSYKGDVYIKDKSLEEITNKSIRSKIAFASQHVFIFNDTVRNNLLIANPNASEELLIKAIKLAKAEFLFTLKNGLDTVLGEYGYTVSGGERQRIAIARIFLTNPDIILLDEITSALDVHTEQAVISNIFEIFKDKTILIVAHRLSNIINCDRILYIEDGRILEEGTFEELMRKQGNFYTLYQKSR
>NC_015587.1|WP_015419589.1|922936_923875_+|ornithine-carbamoyltransferase
MKAHFLDVWDITFDEAKRIIDLSFDFKYNNFNPKSLQNLNIALLFSKPSTRTRVSFEVGIKELGGNPIFLQESSLQVSRGEDASDSARTLSRYVDGVVVRTGSHQWLLEFAQYSVIPVINALTDYTHPCQAISDIFTLFEAFREKIKNIKVLYIGDGNNMANALISAFAIFGLSLTVCTPKELRPDEENLKRALEVSKQTGAEIILEEDPIKAAKDKDVIYTDVWISMNDEGSKDHKINLLKDYQVNAKLLSYAKKDVRVMHCLPAKKGQEITKEVFEEHADFIFNQAENRLHTQKALMYLMFNGTNQMASI
>NC_015587.1|WP_015419588.1|921602_922919_+|RIP-metalloprotease-RseP
MIHTVLAFLILISILIVFHEFGHFIFAKLFGVKVEVFSVGFGNPIFKKKIGETEYQIAYIPMGGYVKLYGEEEEASSKDPKAFSSKAPWQKILIAAAGPLFNLIIAFIGFTLSFYIGIHQPAYIEEPVKVGYIAKKSPFYKAGIRPGDTIIKIDNLPIKTWKDLYTAEIKAVGESSKVVFERNGHIYTTTITLGKILNKDSIGILPEIAPVVGGIIKNSPASQIGLKEGDKILAVKMSDMPTAIPIKNWYELTDYMRKDKGNPITLVIERSNTLLVKDVIPKYSAKLKEYYIGIYPETTYVLKRYPINEAMIQAIRKIKELTILSIDSIKALVTMHASVLNLSGPISIAKMSGQAAEGGLGEFLGFMAFVSLQLAIINILPIPMLDGGLIVLFLIEAIIRRPLSEKFKEYWQKIGIAFVVSLSAVAILSDIIRLFTGV
>NC_015587.1|WP_015419587.1|921204_921606_+|YjbQ-family-protein
MIERIKVKTAKHTSVVNITQRIREIVEASFIDNGLCIVYVPHTTAAVFINEGADPDVVKDILNTLDRLIPWTNDYSHMEGNAAAHIKSSIIGNSRIIPILDGRLMLGKWEAVFLAEFDGPREREVVVSIVRSS
>NC_015587.1|WP_015419586.1|920756_921200_+|nucleoside-deaminase
MQIEYIEQKLLELCKEAIAQDRIPVSAVVTKNDEIVSWAFNGIKSIEHAEIIALEKAMNVLNAKRLDGCNIYVSLEPCPMCTYAISLARIEKVYFFSLDDKKGAILSNANIIDHFELKLKWEYKKNSDFENMLKGYFKNKRRLTVLK
>NC_015587.1|WP_015419594.1|931757_932789_-|alanine-racemase
MRIVLELLKENILNNISQIYNSVNKPIIAVVKANAYGMGSAEVSKVLDDNPYVKSFAVACIEEAVELREVDIKKPILVLGGVLDLKDVEYLKYYKLTPVISSTYQFDMIKDAGIDFHVKFDTGMGRLGFFELQEDIANHPNLKGIMTHLASPLDKEYSAFQIQRFKNIVKSLKRNSIEIHYQSSAGLMYEKDFTTAIRIGLAMYGEKPYEGFDIPIKPIYKVKAKVISLKNFKKGDKISYGGTYTLSKDATIGVVSMGYADGIPKSLANKWYFDFNGVKLPMVGAVTMDMTMFELPDEVNIKIGDYVDFVNEKQTFSMASKIVKTIPYELMCRMGKRVKRVVV
>NC_015587.1|WP_015419595.1|932785_933091_-|hypothetical-protein
MNRNMLILFLATLFLLNPSFALDRCDVYGLFLETCANFGQKHDFSACGDLENELSKIIKSNSKSTKLFIEACTTACKGAVLNKGISKFGVEAFVKMCKVIK
>NC_015587.1|WP_015419596.1|933083_933869_-|UDP-2,3-diacylglucosamine-diphosphatase-LpxI
MKIGLIAGAGELPEVFRKNAIKNKEEVFTVGAKDITTIEADVYLPVGKISKLIELLKEKKVNKIVMLGKFEHKLSLDPRNYDIKAVSILTSLKDKTPSSIIRAFMDFMQEEGFSFLDPKPYLFELLIEKEGLLNDVELDKNVVEDIEFGAKIAKNIADMDIGQTVVIKQKAVVAVEAMEGTDKTILRAFDIAGKGTVVIKSARTNQDFRIDVPTVGIDTLNTLKEVKAKAIAIQKGKVYVLEKEKFIKMANRFGIGVYAYE
>NC_015587.1|WP_015419597.1|933884_935207_-|HAMP-domain-containing-histidine-kinase
MLWFKNISSFRLKLITLFSVLVILSMGFVAISTSFVLHKILINYMYTYLNNQAKPVIEFYSIYSNDLAKEAKDMIDDITSENITAVVLSSNGGVLSVGSFEDSEKPIPINNYILSLFLKKPMGTFEENGEDYAYIVKKTKDVYFVVIGRLREINKVIKQFIYMLTVLTIGVVVFSVLTIYTILNKILKQLDDITRISENIYAGNMDIDIPDSSSSDEFGIMFRAFKNMVEKLNNTIKIQKNFIADVSHEFKTPISYIKAQIEFILTGVYQEDEMFDVLKKVYKQTDVLSKFTEDLLALARLESNIPISKTEVDVVSLLNQLKEEFSIQNRNIILDIKSQDTWIADPHYLKIAVKNLLENAIKYSDKDIILGYTGDCIYVKDFGPGIPEENLPYIFERFYRVSKDKRGLGLGLSIVKAVAQVHNFNLKVEVKDGTTFYICK
>NC_015587.1|WP_015419598.1|935213_937742_-|translation-initiation-factor-IF-2
MSKKKSGIRLKDFVETYGLEDRVDEIKSVLREWRSKNISQVTQYIEEEDKDFLIDYYELSGAVLVEETPKIVAKEVEKEHVKSTKSQKPTSKRPQQKPIQASKKQEPPARKPEIKQETKDQVVIPEPKKEEQSSAPVLLETSKPVESKPVAEEKPEEKIVEEKMEQDKPIEKPEEHMHKVVEENIAKEQPKQEPLTEVKPIEEKQSVQEKVKEEPIQVKAEKQEKVETKQESPKAPSQKPKKEPQKPSPPKEEAKKEEEIKIIEIPEVISVREFAELLGVGPNQIIKELFQEGILVTINQNIDPNLAVKIAEKFGYLAEIKKPEVVIEEEEPEEEDPSKLKPRPPVVVVMGHVDHGKTTLLDTIRKTNVAAREKGGITQHIGASMVKTKDGRLITFLDTPGHEAFTSLRARGAQVTDVAILVVAADDGVMPQTIEAINHAKAFNVPIVVAVNKIDKPGADPSRVRRELSEVGIIPEEWGGDTVFVDVSAKTGQGVDELLDMVMLVADMLELKANPDKKAKGTIIESRLDKQKGPVATVLVTEGTLKVGDIFVAGATYGRVRAMMDSYGHKVKQATPSMAVEIIGFEEVPEAGDVLKVVDSEKQAKELAQIRKTAKEQDKNKELGISLDDIFKKIKEGEVKELKLIVKADAVGSLEAIKKSLSDIKTSEVSIKVIHEGVGSITEGDVMLAKAAKAIILGFNVRPDAKAKEAAEREKVDIRVYGIIYELLDDVKKAISGMLSPVKKEITLGLAEVRATFKVKGAGTVAGCYVLEGKIVRNQRARLIRNGVVIYDGKIESLKRFKEDVNEVARGYECGIKLENYNDIKVKDEIECYEIKEEKQTL
>NC_015587.1|WP_015419599.1|937888_938065_-|hypothetical-protein
MAYERLIGSLKQESKVLVSEEIRRRKALLDKLKSSPKSDFEDIYREQKEKLENKQKLM
>NC_015587.1|WP_015419600.1|938195_939704_-|F0F1-ATP-synthase-subunit-alpha
MTLAYDDALEILKSQLQSFETDIKMEEVGVVYAVGDGVARAYGLDNVMANELLEFDSGEAGLAFNLEEDNVGIIILGSESGIKEGSIVKRTGRILDAPVGEELVGRVIDPLGNPLDGKGPINAKQRSPVEKIAPGIVKRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRATGKTTVAIDTILNQRDTDVYCIYVAIGQKKSTTARIIELLEREGAMKYTTVVVASATDPAPLQYLAPFTGCTIGEYFRDNSKHALIVYDDLSKHAEAYRQLSLLVRRPPGREAYPGDVFYLHSRLLERAAKLNDELGAGSLTALPIIETKAGDVSAYIPTNVISITDGQIYLEPDLFNKGIRPAINVGLSVSRVGGSAQIKAMKQVAGTLRLDLAQFRELEAFMQFASDLDKATQDTINRGLRLVELLKQGPYSPIPVEKQVIAIYAGTNGYLDDIPVSSVRKFEMELYGFLDANFKDLLDELKTKKAIDDSVKAKLKTALDKFKASFIP
>NC_015587.1|WP_015419601.1|939810_940359_-|ATP-synthase-F1-subunit-delta
MKVNKELARKLAKKIISSVPKDKESLSAVSDFLGLLGVLYRKEPKFRDFVLSPFVPNEQKKLFIKSLIQKGNIPKEIEFFVDELIDLNLLRIVDEIKRLFDYESEKILSIYKGKLIFAKEPAKELVDEIIQRVEKVLNRKIEPEISVNEALIGGFELRLSGLVLDTSVRGVLQNLSNKVKSL
>NC_015587.1|WP_015419602.1|940355_940838_-|ATP-synthase-F0-subunit-B
MSNYVFENIWKAVNVILFFALVYKFAGKQIKDMFEKAYKSLVSQVEEPLSKLLSNREAVSLAKKEVEEARKKYEKTLENQRILAKAQYDEILSHAKIVAENIEKMGKEMVEVEANRLKSQLISGLSSSLISKAEVKLKEAFKDEKVEISYIKSRLERLGK
>NC_015587.1|WP_015419603.1|940842_941271_-|ATP-synthase-F0-subunit-B
MSIGVIPNETLFVEIVLFLVFVAIVNYMVLKPYLGIAKERQDQADKTLKEAQALAKEREMLLKEAQEILEKAKKEAQQILEEAIKKANDEKQRILKEAEEKAELEYRTQIEKIKQELEEQKKVLEASLDSLVESLVEKVIKG

Crispr_ID: NC_015587_7

• CRISPR_ID: NC_015587_7
• CRISPR_location: 1024000-1024496
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 7 spacers

Consensus repeat of NC_015587_7

Consensus_repeat	Method
GTTTCAATCCCCTATAGGTACAAACAAAAC	CRISPRCasFinder
GTTTCAATCCCCTATAGGTACAAACAAAAC	CRT
GTTTTGTTTGTACCTATAGGGGATTGAAAC	PILER-CR

spacers of NC_015587_7

>7.1|1024030|36|NC_015587|CRISPRCasFinder,CRT
TATTGATAGAGCGTATATTAGACGATATAGAAGATT
>7.2|1024096|36|NC_015587|CRISPRCasFinder,CRT,PILER-CR
TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA
>7.3|1024162|39|NC_015587|CRISPRCasFinder,CRT,PILER-CR
TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA
>7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR
AAATTAGGGAAATAATGAATCAAATATTAAAATA
>7.5|1024295|37|NC_015587|CRISPRCasFinder,CRT,PILER-CR
TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT
>7.6|1024362|37|NC_015587|CRISPRCasFinder,CRT,PILER-CR
ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA
>7.7|1024429|38|NC_015587|CRISPRCasFinder,CRT,PILER-CR
AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT

CRISPR arrays and Neighbor proteins around NC_015587_7

CRISPR arrays

The CRISPR arrays of NC_015587_7

>merge|NC_015587|7|1024000-1024496|CRISPRCasFinder,CRT,PILER-CR
AAGTAAATCCCCTATAGGTACAAACAAAACTATTGATAGAGCGTATATTAGACGATATAGAAGATTGTTTCAATCCCCTATAGGTACAAGCAAAACTCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGAGTTTCAATCCCCTATAGGTACAAGCAAAACTTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAAGTTTCAATCCCCTATAGGTACAAACAAAACAAATTAGGGAAATAATGAATCAAATATTAAAATAGTTTCAATCCCCTATAGGTACAAACAAAACTTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATTGTTTCAATCCCCTACAGGTACAAACAAAACACATTGACATCAAAACTAATAAAGTGCCGATTATGGAGTTTCAATCCCCTATAGGTACAAACAAAACAAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACTGTTTCAATCCCCTATAGGTACAAACAAAAC

>NC_015587|7|7|1024000-1024496|CRISPRCasFinder
AAGTAAATCCCCTATAGGTACAAACAAAAC	TATTGATAGAGCGTATATTAGACGATATAGAAGATT
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAATTAGGGAAATAATGAATCAAATATTAAAATA
GTTTCAATCCCCTATAGGTACAAACAAAAC	TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT
GTTTCAATCCCCTACAGGTACAAACAAAAC	ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT
GTTTCAATCCCCTATAGGTACAAACAAAAC

>NC_015587|7|5|1024000-1024496|CRT
AAGTAAATCCCCTATAGGTACAAACAAAAC	TATTGATAGAGCGTATATTAGACGATATAGAAGATT
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAATTAGGGAAATAATGAATCAAATATTAAAATA
GTTTCAATCCCCTATAGGTACAAACAAAAC	TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT
GTTTCAATCCCCTACAGGTACAAACAAAAC	ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT
GTTTCAATCCCCTATAGGTACAAACAAAAC

>NC_015587|7|6|1024066-1024496|PILER-CR
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA
GTTTCAATCCCCTATAGGTACAAGCAAAAC	TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAATTAGGGAAATAATGAATCAAATATTAAAATA
GTTTCAATCCCCTATAGGTACAAACAAAAC	TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT
GTTTCAATCCCCTACAGGTACAAACAAAAC	ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA
GTTTCAATCCCCTATAGGTACAAACAAAAC	AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT
GTTTCAATCCCCTATAGGTACAAACAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419687.1|1014758_1015340_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|338614
NC_015587.1|WP_015419696.1|1027310_1027589_-|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl|CDD|224739
NC_015587.1|WP_015419697.1|1027579_1028398_-|A24-family-peptidase	unknown	unknown	gnl|CDD|377700
NC_015587.1|WP_015419689.1|1018977_1019364_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419699.1|1029899_1030502_-|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl|CDD|129824
NC_015587.1|WP_015419701.1|1031296_1032070_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|239516
NC_015587.1|WP_015419694.1|1024888_1026553_-|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl|CDD|235393
NC_015587.1|WP_015419686.1|1014060_1014762_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl|CDD|181800
NC_015587.1|WP_015471364.1|1026622_1027348_-|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl|CDD|376413
NC_015587.1|WP_015419691.1|1021023_1021623_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419698.1|1028394_1029897_-|protein-translocase-subunit-SecD	unknown	unknown	gnl|CDD|235615
NC_015587.1|WP_015419702.1|1032071_1032491_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419690.1|1019778_1020762_+|hypothetical-protein	unknown	unknown	gnl|CDD|273806
NC_015587.1|WP_012514171.1|1015326_1015608_-|30S-ribosomal-protein-S20	unknown	unknown	gnl|CDD|376586
NC_015587.1|WP_015419700.1|1030505_1031261_-|energy-transducer-TonB	unknown	unknown	gnl|CDD|273570
NC_015587.1|WP_015419703.1|1032487_1033711_-|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl|CDD|224600
NC_015587.1|WP_015419688.1|1015717_1018981_-|RAP-domain-protein	unknown	unknown	gnl|CDD|350195
NC_015587.1|WP_015419693.1|1022941_1023889_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl|CDD|368098
NC_015587.1|WP_015419692.1|1021749_1022400_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_015587.1|WP_015419685.1|1012128_1013718_-|NADH/Ubiquinone/plastoquinone-(complex-I)	unknown	unknown	gnl|CDD|223941

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419687.1|1014758_1015340_-|tetratricopeptide-repeat-protein	gnl|CDD|338614	pfam13174, TPR_6, Tetratricopeptide repeat.	0.00300868
NC_015587.1|WP_015419696.1|1027310_1027589_-|twin-arginine-translocase-TatA/TatE-family-subunit	gnl|CDD|224739	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion].	1.09061e-05
NC_015587.1|WP_015419697.1|1027579_1028398_-|A24-family-peptidase	gnl|CDD|377700	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain. This family is found at the N-terminus of the pre-pilin peptidases (pfam01478). It's function has not been specifically determined; however some of the family have been characterized as bifunctional, and this domain may contain the N-methylation activity (EC:2.1.1.-). It consists of an intracellular region between a pair of transmembrane. This region contains an invariant proline and two almost fully conserved disulphide bridges - hence the name DiS-P-DiS. The cysteines have been shown to be essential to the overall function of the enzyme in, but their role was incorrectly ascribed.	9.47362e-45
NC_015587.1|WP_015419694.1|1024888_1026553_-|carbamoyl-phosphate-synthase-large-subunit	gnl|CDD|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_015587.1|WP_015419699.1|1029899_1030502_-|ribosome-associated-translation-inhibitor-RaiA	gnl|CDD|129824	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95., ribosomal subunit interface protein. This model includes a small protein encoded by one of two genes, both downstream of the gene rpoN for sigma 54, whose deletion leads to increased expression from sigma 54-dependent promoters. It also includes the N-terminal half of a light-repressed protein LtrA of Synechococcus PCC 7002 and the N-terminal region (after removal of the transit peptide) of a larger plastid-specific ribosomal protein of spinach. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes. [Protein synthesis, Translation factors].	3.33503e-21
NC_015587.1|WP_015419701.1|1031296_1032070_-|NUDIX-domain-containing-protein	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	2.24826e-10
NC_015587.1|WP_015419686.1|1014060_1014762_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl|CDD|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	3.12546e-131
NC_015587.1|WP_015471364.1|1026622_1027348_-|twin-arginine-translocase-subunit-TatC	gnl|CDD|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	6.89625e-68
NC_015587.1|WP_015419690.1|1019778_1020762_+|hypothetical-protein	gnl|CDD|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	0.000202235
NC_015587.1|WP_015419698.1|1028394_1029897_-|protein-translocase-subunit-SecD	gnl|CDD|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	3.50019e-154
NC_015587.1|WP_012514171.1|1015326_1015608_-|30S-ribosomal-protein-S20	gnl|CDD|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	2.194e-18
NC_015587.1|WP_015419700.1|1030505_1031261_-|energy-transducer-TonB	gnl|CDD|273570	TIGR01352, Protein_TonB, TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm. [Transport and binding proteins, Cations and iron carrying compounds].	1.34709e-07
NC_015587.1|WP_015419703.1|1032487_1033711_-|D-alanyl-D-alanine-carboxypeptidase	gnl|CDD|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.57539e-44
NC_015587.1|WP_015419688.1|1015717_1018981_-|RAP-domain-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	2.62582e-20
NC_015587.1|WP_015419693.1|1022941_1023889_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl|CDD|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	5.83531e-70
NC_015587.1|WP_015419692.1|1021749_1022400_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	8.65214e-41
NC_015587.1|WP_015419685.1|1012128_1013718_-|NADH/Ubiquinone/plastoquinone-(complex-I)	gnl|CDD|223941	COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism].	6.48138e-65

Protein sequences

>NC_015587.1|WP_015419693.1|1022941_1023889_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MDIQPHDTFFKQIFSDPKRLKMLLDIFAEDIAQDIHSITPVNTEKFSSKSQKFMLDLLFSCKVEDQDAYIRVVLEHKSYLDKELPIQLSYYNSAIWEEAIKEKEYYPPIINIVFYHGKGEWNMPTCLPIVKNTKLEKYTSKLNYILIDLNKISDDDIISETHKDLCTQWALLAMKHIFDSIKDFIKVFELIADYIKTHDYIETTHCIFLTLDYIVSVKDSAEEVENILKELTGGDEKVMTLTEKWKMEGKQEGLQEGLQKGLIKAKKDDIKSAVLIKFGLLPKDFEEKIENTDDIQALNDIFKKVILATKIEEIQ
>NC_015587.1|WP_015419692.1|1021749_1022400_-|sel1-repeat-family-protein
MKKSYIIGGTILLVLIGGFVFHRYVYSKIEYKKGLSYYKNKNYQKALPLFKDAANQGYAPAEVKLGVLYLYGEGTLKNYDKAIYWFKKAADQGDADGGFDLSVIYVNGLGVPRNYRKALYWVKKFAERGNAYGEFGLGWMYLFGKGVPKDYDEALYWVKKSAEQGNARGENLLGYMYENGFGVSQDYNKALYWYKKSAEQGYAPAKANLERLESEH
>NC_015587.1|WP_015419691.1|1021023_1021623_-|hypothetical-protein
MLKKLVATLALTSLAFGSGLCFNPYNHDYGVSTKDMSNFYYVSYNRNKEIVLHNGKLQLDKDVSIKLLKYIAKGNKALVLMKADVDYLVFYVECVNGKPQTKAAEDIGSYVDSDFSHPWNVKRYPVKVGFYKDGFWTKALGIDGGTYHDPEYHCNYETAYFPYKLVEEHKTDNNPPHKNKFLPKRVCNVLVKQLGIGLP
>NC_015587.1|WP_015419690.1|1019778_1020762_+|hypothetical-protein
MDQENKHPQKIDITIRDIIPSFSESAFIRMITGKNYKRVLNSVFPSTKERRVDLLLELEDNSILHIKFQTSNDKDMLYRMLEYYSLIKSHFKDRSLYQKLIYLGEDECNMENSFEDIGISYKYEIIDIKYIQCDSLIESNNIADITFAFLCNVKDREKLFKKAVAKLKELPSKERSDWFKKILTLLSIRPKLSKEIIDFYEEAPMLEISLTIDDIKEWPVVGKLVKELEQEAILKGMLEGELKGKLKGKLEGRLEGKIEGKLEGRLEEKLEDIKRVILTRFGILPEDIENRLSKIEDLQKLNVIFDKSITANSIDEIEKLISETTKR
>NC_015587.1|WP_015419689.1|1018977_1019364_-|hypothetical-protein
MPTEIILIVILILLLISIALNITTYLKLEKDKSLILEEMSNHHKEVSNHNNMIQTAMNQAFLDLDKKIERHENEIKEHNNMIQTAMNQAFLDLDKKIERHENEIKELEEKIEHIIKLLKEPLTEEDLR
>NC_015587.1|WP_015419688.1|1015717_1018981_-|RAP-domain-protein
MNDKQYILDYLGYLKELSRKIGVGVDFGNLVKSKPRNKNLENTFFYFDKNLDIGEIYRIDIGEIYRANKEVDGKLYWYLRQKLIEINNSNQAIFLGIGLLKYVIKENGSYTNKAFGPIFIVNLDIEEDKEGKSISIYFENSYINYDLFNNISENLEDNENSIQLEQAVYFIKTLEEKLEETNNLLGLKTLAKEAILKIPEAFNIKIEQDITIENKNVKEIFYKKESVYLDRNYFFVNNFPSELSTYKSLELLIQEINEEGDFKNSTLKKLFVSAFEEKINLEKVDNFKLEDYEYLTPLQLSESQKKALENAINYEISYIQGPPGTGKSHTITALALLSILLDKKILIVSQKPPAIKVLFEKLTEILEKNNIIPFIYYYDEHKRKMKENVGAVERLNIKDDLKERLRYLEERAIDYINELKELEKNYKKYLALENKYYSIRKDLNDEVKFFEGGFFNIKNYLNHLKCIEIEELNLHKNTFKVLEGYGNTRLLQLRKVFLYRFLKNYHKELELKKFLNISQSLFLDSLIKIIYDYNKIQDTKSKILSFGDIQNLVNRINHIKSQLMQVSKELVNLKLLLKIYENAQKYKNNLAKFKNVFHWVKDRLLKNVQEKVNYENILEIFNIWIVDIPNVDRILPMKPNLFDIVVVDESSQVNLAQIIPVFYRGKHICVVGDHKQLSLEATGLGFSIGGKLDRYTWEKFKPNKIDYEQAKRRDLILTKSSILDFLVSDDSDKDSNRESFNYISAEAQSMLNEHFRSVYPSASFTSKKFYENKIYIMTKNPNLEDKAFKSIKVNGKRHLKFNVVEEEIDEVFKIIESLKRNRRYEDVVLPDYVPENFSIGVLSFTRDQVVRLKIRSYEYGYEDILIGTPEEFQGHEKDVMIISLALDETCTRSKNHYENKNRFNVATSRAKYFTFLVYGGIPENFHLTKEYIVHFESIENVDRKNIDTENAHLDKSKFESELEEFVYNYLKDIVNEINKNYHSDIRIYNQYETCGYRLDFVLHNRKNKKFIALEADGPYHYEQSGLQSINYADWHIERAERLKRAGWKVIHTPYYRWYINGWLDSSNPIMREELERIKKELVENLTT
>NC_015587.1|WP_012514171.1|1015326_1015608_-|30S-ribosomal-protein-S20
MPNKRQAAKRARRDERRREINALHVSRMKTAIRNFKKLIQAKDLETAKAKLPFVVSMIQHAAAKGSIHKNEAARRVSRVTQLLNKALASNEQK
>NC_015587.1|WP_015419687.1|1014758_1015340_-|tetratricopeptide-repeat-protein
MSKNKIYTILSLSITAIFVAIGFYFLKNHEKEYNEAASYQLSKVDELLQQKNYQGALNQAQFVATHYKKSPMALLAMSYEIGISTLANLPVNDVALSQDISSKAKTLPAKFLYEERAAYGLYKEGKYQQAVSILNTIPNNAFNKASALLLEAEAYEKLNDKVKAITVYNDIIKAFPKSYYANVASLRISMLES
>NC_015587.1|WP_015419686.1|1014060_1014762_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MNKLYEGKAKIVYENDQDTYIITFKDDVTAFDAIKKDNISGKGHINLEITSFIFELLKARNIKTHFIKKLSENSMVVLKATRIDVEVVVRNIAAGSLTKRLGIKEGTSLNPPLVELFYKSDELHDPLICIEHVKLLNLATEEDITFMKQTALKVNDVLKEFFDQLDIILVDFKLEFGKTKDGEIILIDEISPDSCRLWDKKTGEKLDKDRFRFDLGDLKEGYLKILERIKTHS
>NC_015587.1|WP_015419685.1|1012128_1013718_-|NADH/Ubiquinone/plastoquinone-(complex-I)
MEIVVSIPFIPLVIAALISFVDDKRAIPRISMFFSGLIAIISLIGTAYEFMFHKVIIGFYNTLVFDHLASILVPYVAIIGLVIRKYASNYMWDEKGYKRFFIILNFIFSSIYFMIMANNLIVMFIAWQILSLSLYFLISFRVESKDAVRFGSWAITVHRIGDFFFLLGTILTYKVYHTLNLQTLYHIWQTNIEHSTVVNAIALLFVASAMAKSAIIPFYFWLPYTSEAPTPVSALMHAGIVNAGGILLNKIAYLYLSSSIALNTAFFFGILTAIAASVVMLSKPDIKRSLGYSTVGQMGYMIMEVGIGAFSVAIYHLIVHGIFKASLFLESGNVIHLARKDPNIPKNLSYKLFSEETEENRKTIGEIVAIFTIIPIVLFTLIEFLINRVQFQFQAGIIFLAFGWLTSAQLFLSFFKVSKNTSLKTILGLIVSFVFIVLTYEFMGTTFEEYLYGPKYVEFYKAANLSIPYLLILLALLIGVIVFGWAIIYYQSYKDASGTRYEKLKWTFYKIFSRGFFLPDILIRYFKLL
>NC_015587.1|WP_015419694.1|1024888_1026553_-|carbamoyl-phosphate-synthase-large-subunit
MPKNTNIKRILILGAGPIIIGQAAEFDYSGTQACKALMREGYEVVLVNSNPATIMTDEQLATKTYIEPLTVEVLEEIIKKEHPDVLLPTLGGQTALNLAKDLYESGILEKYGVGIIGASYEAIKKGEDRALFAKAMEEIGLKVPPNAIVNSLSEGMASIKDIGFPAILRPAFTLGGTGGSIVYNLEEFPAKLNAALEASPIHQVLIDKSLIGWKEFELEVIRDTKDNVVIVCSIENFDPMGVHTGDSITVAPAQTLTDKQYQMLRDASLAIIRKIGVDTGGSNIQFAVDPNSDNFYVIEMNPRVSRSSALASKATGFPIAKVAALLAVGYTLDEIKNDITKNTPISFEPSIDYVVVKIPRFDFAKFKESSKILGTTMKSVGEVMAIGRTFKEAFMKAIRSLETDNPYLFMKDYEALSYDELLTNIRIPTPERIFYIKEAFMRGISIEKVNEVSHIDKWFLHQIKELVEAYKQDIPFDKDYIFELKILGFSNKEIAKKFNKTEKEIEELLEGLMPTFKAVDTCAGEFRAYTPYYYSSWEYPYYKIGQEEAIFDND
>NC_015587.1|WP_015471364.1|1026622_1027348_-|twin-arginine-translocase-subunit-TatC
MEHLQELRQRILKSIAAVLIFSAISFFYAKYVFEILKYPIDVYYPGMKLITLSPTEPLFIMMEISVIVGIILAIPVILYQIWRFVEPALYPEEKRLVFPLVFFSLVLFVMGASFAYFAVLPMALKFLIGIGFSQLRAKPMLSAELYINFLLKMLLGFGIAFEMPIFLFMLQRAGIISTKQLKSFRKYFIVVAFFIGALIAPDVSTQILMALPLIALYEISIFVGRFAVKKQNTSKDIQKAQ
>NC_015587.1|WP_015419696.1|1027310_1027589_-|twin-arginine-translocase-TatA/TatE-family-subunit
MDLGQIIIILVIAYIVLGPEKMMDVATKLGEFTRKAREFMDEIKMQAYIENVNKKVLELEKEQTNTEEKKDGEGTSESSTDGASSGTKTENT
>NC_015587.1|WP_015419697.1|1027579_1028398_-|A24-family-peptidase
MTILILLTFFLLGTIFGSLYNVLIYRLPRGESVVYPNSKCPHCGHKIKPYENIPILSYIFLRGRCSACKNKISMRYPIVEALTGFYFALCVYAFYIKNNENLSVLNIKDAVKTLEALLFGSILIVQSFIDLDWFILLDSFNYAGIVFGLLFSLSNYGFVDIKSSILGILFGGLIPFLIYYIYLKVRKMEGLGIGDIKLLAMIGAFGGIWMVLGAMFFGSVIGLLVSIPTIIKNKNMQYYIPFGPFLSIGAIIWMFLDRGILVGIFIERVLWT
>NC_015587.1|WP_015419698.1|1028394_1029897_-|protein-translocase-subunit-SecD
MPKNIFLNILIGAFIIIGSLLVVAFKPVNLGLDLKGGISMVLAPDIDKVIKEEYENTASDISKLFLKNHINVLDVTPSQDGIYIDLLNASDYNKVYELLTKYYKNRIDISKVSALKVKVRFSSIYLSQIKENVITQTVEVLRRRVDQLGVVQPVITRLGNSKVMVELPGVMDLERAKKVLGKTAQLELMEVVDASASLDALQKELKPDEKILPSKDGHEWYLVKKKPIITGADLKTAYESTDSFNNPAVSFELNSKGAEIFGNFTQSHIGKRLAIVLDNRVMSAPVIRSRISDQGQITGNFTPDQVRDLAAILRAGALPTTLHILQDAVVGPTLGKAAIKQSIYAGLASFLFVVLLIIARYKTAGVTATIAIIMNGLLLWAGLVLLGATLTLPGIAGIILNMGIAVDSNVLIFERIKEEITRGNTLRKAVEYGYKRVLSAVYDTHATLLVAALILFQFSSGPVKGFATTLTIGTIASFLSNVYYSKVMIDILAKLRMLKI
>NC_015587.1|WP_015419699.1|1029899_1030502_-|ribosome-associated-translation-inhibitor-RaiA
MQIEFIGKHFEITEHLRAFVEAKLSKFKRLLRETGEDQTEVVVTISSARAKHTDDNINKTSIYRVDIDIYIKSNGGGTVHAWEEDKDVYTAIDRVIDEVERQLLKLKERRLNYRRKSSKTKEETREIPLEPLEEEQETKTFVIEETFSVEKPMSVEDAILELTENHMVFLPFMDTKDGKIKILYRKRSDSFGVIDLGCKG
>NC_015587.1|WP_015419700.1|1030505_1031261_-|energy-transducer-TonB
MDLKQETQELPFFLVSILINIFLFSGLAMLFTMRPLLSQYQNPPVNVQLINPPKEVPTPPKPIKLQKFHMKRSYSKPLSPAKGYKPSRGVHKPLQTSALRQRQVFKKGDIKIPVVHHPPKAPPKNISVLSSLEKEIEAQRKQAQTDIEGAIKQVGNLSATISSKGSYLHEGSRKLIYAPPAPVIRAGEFPAPMVLRIFVSPSGYVTRVIILKRSGIAYVDREVVNYVRRFRFEPINGPVESGTITINFKGG
>NC_015587.1|WP_015419701.1|1031296_1032070_-|NUDIX-domain-containing-protein
MDLDKIKFIGFSDKKLKKFLDKSNYVFWEWADKLKHHKDIEYIKIYGKDAVYFGKEFGRVQVFVKLENLYRGIITLRKKAVAIGVFVFSDDIYQLNVKQFRYPILDEAEEIVAGLIDAIRHGNLEKSIEETIKKEVIEELGIEPTSHIYKSLMESKPIFIKSLYPTIGDSSEEVFLYVLFLKAKKEEIEHLCKKEAGNKEENEYTKVSCIKGIENILNRDYIDAKSFIIQLWLKTKYLEFKQSSFSHFEDFIGSLYK
>NC_015587.1|WP_015419702.1|1032071_1032491_-|hypothetical-protein
MKNFLFTVVVLGMGLRMAFGYIGDSYDTFLKEYKHVKILSVDKNITPHAKRALEIEKNGFKVYALFDEKDICYEEYTLKNKTLPSPDLFIKDASKIKPKLLLRIPLRMAVWEYDTPTYKIIYQTFGLPGYLSADARIKQ
>NC_015587.1|WP_015419703.1|1032487_1033711_-|D-alanyl-D-alanine-carboxypeptidase
MYYNEEDRYAKHKNLKRVLVLLVLGFIFYVGFQLFKGWPKPKLELSLKDQQIPGSFNISWPTDIRYGVIGTLQSGIISKTPNQGQWPLASVAKIMTAYIILKDHPLSIGQDGPTVTVTQKEVNEYEAFKKDGQSVVKVTLGEKLTERQLLEGLMIPSANNFAYILARWDAGSVKAFVDKMNKTAQSLGLKDTRYEDPSGASAGTVSTPTDQFKLTQLAMQIPTFRHIVAMPQVVLPVAGIQYNVNYDLGKDNIVGVKTGSSLPAGANFVFDSKQGNIDILGVIFGASGRSPLITALKDAITLIDMTKTQLSTEKLISKNQQIGFIKVPWIKKEIPMLASDDFSTVVYPGMKITYSLYPVKDIKFPIKPNEVIGTLIINYGDSSYSMPVIISQEIKAPSFLDRLRRVL

Crispr_ID: NC_015587_8

• CRISPR_ID: NC_015587_8
• CRISPR_location: 1088875-1092207
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 50 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas8b2,cas7,TnpB_regular.1

Consensus repeat of NC_015587_8

Consensus_repeat	Method
GTTTCTAATTAACCGTGTGGAGTTGAAAG	PILER-CR
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CRISPRCasFinder
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CRT

spacers of NC_015587_8

>8.1|1088904|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC
>8.2|1088972|40|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA
>8.3|1089041|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA
>8.4|1089106|35|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT
>8.5|1089170|38|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA
>8.6|1089237|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT
>8.7|1089303|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT
>8.8|1089369|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA
>8.9|1089434|35|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATCTCCTACAGCACTCCATTGATAATATGTTATTT
>8.10|1089498|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA
>8.11|1089563|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT
>8.12|1089628|38|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA
>8.13|1089695|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT
AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC
>8.14|1089763|40|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG
>8.15|1089832|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG
>8.16|1089898|38|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA
>8.17|1089965|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG
>8.18|1090030|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG
>8.19|1090096|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC
>8.20|1090161|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA
>8.21|1090229|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
>8.22|1090294|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
>8.23|1090360|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA
>8.24|1090425|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT
>8.25|1090491|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG
>8.26|1090556|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC
>8.27|1090621|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA
>8.28|1090687|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA
>8.29|1090752|38|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA
>8.30|1090819|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA
>8.31|1090885|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT
>8.32|1090950|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG
>8.33|1091015|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT
>8.34|1091080|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA
>8.35|1091146|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA
>8.36|1091211|42|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA
>8.37|1091282|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA
>8.38|1091348|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT
>8.39|1091413|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CTACCAATCGCATCTACGCCTATCACCTTCCAACCA
>8.40|1091478|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTGATTACAAACATTATCAACGCACTTGTAAAACAAA
>8.41|1091544|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT
>8.42|1091610|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT
>8.43|1091676|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG
>8.44|1091742|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
>8.45|1091807|37|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
>8.46|1091873|41|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG
>8.47|1091943|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ATTACTGAAAAATTGCAACAATTATTAAACTACATG
>8.48|1092008|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT
CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA
>8.49|1092076|36|NC_015587|PILER-CR,CRISPRCasFinder,CRT
AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT
>8.50|1092141|38|NC_015587|PILER-CR,CRISPRCasFinder,CRT
ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA

CRISPR arrays and Neighbor proteins around NC_015587_8

CRISPR arrays

The CRISPR arrays of NC_015587_8

>merge|NC_015587|8|1088875-1092207|PILER-CR,CRISPRCasFinder,CRT
GTTTCTAATTAACCGTGTGGAGTTGAAAGACTTATGCAAAAGTATCTATTACATTAGAACTATCAAACGTTTCTAATTAACCGTGTGGAGTTGAAAGCCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTATCACACGTGCAAGTGTTTTGTGTTTTGATATGAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTGTCTCGTAACATTAAAATTCGTTGGAGTTGTATGTTTCTAATTAACCGTGTGGAGTTGAAAGTCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGAGTTTCTAATTAACCGTGTGGAGTTGAAAGCTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTTGTTTCTAATTAACCGTGTGGAGTTGAAAGATTTCTTGAGATAATTTGATGATAGAAATATTTTTCTGTTTCTAATTAACCGTGTGGAGTTGAAAGGTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAAGTTTCTAATTAACCGTGTGGAGTTGAAAGATCTCCTACAGCACTCCATTGATAATATGTTATTTGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTTGTTTCTAATTAACCGTGTGGAGTTGAAAGTCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATAGTTTCTAATTAACCGTGTGGAGTTGAAAGAACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGCGTTTCTAATTAACCGTGTGGAGTTGAAAGCCAAAATATACTTGATAAAAACGATAAACAAGCACATTCGGTTTCTAATTAACCGTGTGGAGTTGAAAGTTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTGGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTGTTGGATAAGTGATTTTTACTTTGTACTTCATGGGTTTCTAATTAACCGTGTGGAGTTGAAAGGAAGCTGTCAATCTAAACACTACTTTGTAATTATTTGGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGCGTTTCTAATTAACCGTGTGGAGTTGAAAGGCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGTGTTTCTAATTAACCGTGTGGAGTTGAAAGATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTCGTTTCTAATTAACCGTGTGGAGTTGAAAGTTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCTGTTTCTAATTAACCGTGTGGAGTTGAAAGAAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAGGTTTCTAATTAACCGTGTGGAGTTGAAAGATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGCGTTTCTAATTAACCGTGTGGAGTTGAAAGTGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCAGTTTCTAATTAACCGTGTGGAGTTGAAAGGACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTAGTTTCTAATTAACCGTGTGGAGTTGAAAGGACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAAGTTTCTAATTAACCGTGTGGAGTTGAAAGCGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGAGTTTCTAATTAACCGTGTGGAGTTGAAAGTATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCTGTTTCTAATTAACCGTGTGGAGTTGAAAGCTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTGGTTTCTAATTAACCGTGTGGAGTTGAAAGTAGAGCATTTGCACTCATAGATGCTCCAGTAGGACTGTTTCTAATTAACCGTGTGGAGTTGAAAGTAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCAGTTTCTAATTAACCGTGTGGAGTTGAAAGAACACAGACGCAAACCTTTTAAACGCAAACGGTGTAGTTTCTAATTAACCGTGTGGAGTTGAAAGACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGAGTTTCTAATTAACCGTGTGGAGTTGAAAGACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGAGTTTCTAATTAACCGTGTGGAGTTGAAAGGAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCTGTTTCTAATTAACCGTGTGGAGTTGAAAGCTACCAATCGCATCTACGCCTATCACCTTCCAACCAGTTTCTAATTAACCGTGTGGAGTTGAAAGTTGATTACAAACATTATCAACGCACTTGTAAAACAAAGTTTCTAATTAACCGTGTGGAGTTGAAAGGAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTATGTTTCTAATTAACCGTGTGGAGTTGAAAGTAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTTGTTTCTAATTAACCGTGTGGAGTTGAAAGGCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGGGTTTCTAATTAACCGTGTGGAGTTGAAAGTTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGTGTTTCTAATTAACCGTGTGGAGTTGAAAGATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTCGTTTCTAATTAACCGTGTGGAGTTGAAAGATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGGGTTTCTAATTAACCGTGTGGAGTTGAAAGATTACTGAAAAATTGCAACAATTATTAAACTACATGGTTTCTAATTAACCGTGTGGAGTTGAAAGCTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCAGTTTCTAATTAACCGTGTGGAGTTGAAAGAGCATCGGGGCGTTTATAAATACCGATGCAAAAACTGTTTCTAATTAACCGTGTGGAGTTGAAAGACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGAGTTTCTAATTAACCGTGTGGAGTTGAAAG

>NC_015587|8|7|1088875-1092207|PILER-CR
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATCTCCTACAGCACTCCATTGATAATATGTTATTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTACCAATCGCATCTACGCCTATCACCTTCCAACCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGATTACAAACATTATCAACGCACTTGTAAAACAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTACTGAAAAATTGCAACAATTATTAAACTACATG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG

>NC_015587|8|8|1088875-1092207|CRISPRCasFinder
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATCTCCTACAGCACTCCATTGATAATATGTTATTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTACCAATCGCATCTACGCCTATCACCTTCCAACCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGATTACAAACATTATCAACGCACTTGTAAAACAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTACTGAAAAATTGCAACAATTATTAAACTACATG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG

>NC_015587|8|6|1088875-1092207|CRT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATCTCCTACAGCACTCCATTGATAATATGTTATTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTACCAATCGCATCTACGCCTATCACCTTCCAACCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTGATTACAAACATTATCAACGCACTTGTAAAACAAA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ATTACTGAAAAATTGCAACAATTATTAAACTACATG
GTTTCTAATTAACCGTGTGGAGTTGAAAG	CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA
GTTTCTAATTAACCGTGTGGAGTTGAAAG	AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT
GTTTCTAATTAACCGTGTGGAGTTGAAAG	ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA
GTTTCTAATTAACCGTGTGGAGTTGAAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419772.1|1101729_1102293_-|RNA-methyltransferase	unknown	unknown	gnl|CDD|378317
NC_015587.1|WP_015419766.1|1093401_1094367_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419754.1|1076898_1079613_+|diguanylate-cyclase	unknown	unknown	gnl|CDD|143635
NC_015587.1|WP_015419758.1|1081495_1083718_+|type-I-B-CRISPR-associated-protein-Cas5	cas8b2	cd09665_cas8b2_CAS-I-B	gnl|CDD|273860
NC_015587.1|WP_015419756.1|1079913_1080477_+|thiamine-phosphate-synthase	unknown	unknown	gnl|CDD|238317
NC_015587.1|WP_015419768.1|1096442_1098188_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173865
NC_015587.1|WP_015419761.1|1086403_1087357_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
NC_015587.1|WP_012514222.1|1094367_1094754_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl|CDD|237320
NC_015587.1|WP_015419770.1|1099831_1100653_-|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|234703
NC_015587.1|WP_015419757.1|1080522_1081509_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09650_cas7_CAS-I	gnl|CDD|273846
NC_015587.1|WP_015419764.1|1092209_1092995_-|PDZ/DHR/GLGF-domain-protein	unknown	unknown	gnl|CDD|225575
NC_015587.1|WP_015419767.1|1094944_1096399_+|IS200/IS605-family-accessory-protein-TnpB-related-protein	TnpB_regular.1	-	gnl|CDD|273793
NC_015587.1|WP_015419755.1|1079629_1079914_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419760.1|1085898_1086411_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015587.1|WP_015419771.1|1100649_1101729_-|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl|CDD|234638
NC_015587.1|WP_015419759.1|1083689_1085897_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_015587.1|WP_015419762.1|1087353_1087635_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015587.1|WP_015419765.1|1092991_1093420_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419763.1|1088448_1088640_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419769.1|1098287_1099835_+|2-isopropylmalate-synthase	unknown	unknown	gnl|CDD|234864

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015587.1|WP_015419767.1|1094944_1096399_+|IS200/IS605-family-accessory-protein-TnpB-related-protein	TnpB_regular.1	-	3.5e-11	37.1	30.6
NC_015587.1|WP_015419758.1|1081495_1083718_+|type-I-B-CRISPR-associated-protein-Cas5	cas8b2	cd09665_cas8b2_CAS-I-B	6.4e-49	161.6	12.3
NC_015587.1|WP_015419759.1|1083689_1085897_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	4.6e-82	270.6	0.1
NC_015587.1|WP_015419761.1|1086403_1087357_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	3.9e-121	398.8	8.0
NC_015587.1|WP_015419762.1|1087353_1087635_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-24	81.1	0.9
NC_015587.1|WP_015419760.1|1085898_1086411_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	4.6e-53	174.4	1.5
NC_015587.1|WP_015419757.1|1080522_1081509_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09650_cas7_CAS-I	2.1e-68	224.7	1.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419768.1|1096442_1098188_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_015587.1|WP_015419754.1|1076898_1079613_+|diguanylate-cyclase	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.8273e-60
NC_015587.1|WP_015419758.1|1081495_1083718_+|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.32727e-42
NC_015587.1|WP_015419756.1|1079913_1080477_+|thiamine-phosphate-synthase	gnl|CDD|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	2.28565e-59
NC_015587.1|WP_015419770.1|1099831_1100653_-|shikimate-dehydrogenase	gnl|CDD|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	6.06292e-97
NC_015587.1|WP_015419761.1|1086403_1087357_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.83858e-145
NC_015587.1|WP_015419760.1|1085898_1086411_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.74909e-58
NC_015587.1|WP_015419772.1|1101729_1102293_-|RNA-methyltransferase	gnl|CDD|378317	pfam09936, Methyltrn_RNA_4, SAM-dependent RNA methyltransferase. This family has a Rossmanoid fold, with a deep trefoil knot in its C-terminal region. It has structural similarity to RNA methyltransferases, and is likely to function as an S-adenosyl-L-methionine (SAM)-dependent RNA 2'-O methyltransferase.	5.26397e-96
NC_015587.1|WP_015419757.1|1080522_1081509_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	1.01205e-53
NC_015587.1|WP_015419764.1|1092209_1092995_-|PDZ/DHR/GLGF-domain-protein	gnl|CDD|225575	COG3031, PulC, Type II secretory pathway, component PulC [Intracellular trafficking and secretion].	5.20947e-24
NC_015587.1|WP_015419767.1|1094944_1096399_+|IS200/IS605-family-accessory-protein-TnpB-related-protein	gnl|CDD|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	1.28328e-10
NC_015587.1|WP_015419771.1|1100649_1101729_-|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl|CDD|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.48283e-159
NC_015587.1|WP_015419759.1|1083689_1085897_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.88017e-80
NC_015587.1|WP_015419762.1|1087353_1087635_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3186e-23
NC_015587.1|WP_012514222.1|1094367_1094754_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl|CDD|237320	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional.	3.20737e-66
NC_015587.1|WP_015419769.1|1098287_1099835_+|2-isopropylmalate-synthase	gnl|CDD|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0

Protein sequences

>NC_015587.1|WP_015419763.1|1088448_1088640_-|hypothetical-protein
MRKKGKKLVKTTVLLPSDVHRALRIEAITKKISMGDLIVQKLNELEEYKEKYGGVVKAEEYLH
>NC_015587.1|WP_015419762.1|1087353_1087635_+|CRISPR-associated-endonuclease-Cas2
MRIILFYDIDTTEKKGQRRLQKALKTARKYLTHVQKSVFEGNLTASGIERLKNEMLKVVDKEKDSLIIYILEDTTNYKREILTNIKDPTDNLI
>NC_015587.1|WP_015419761.1|1086403_1087357_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGEVYYITTSGTLRRDENTILFENQDIKKKIPIENVSELFIVTEVSTNTKFFSLLSEYDIVAHFFNYYGYYIGSFYPRESKLSGHLIIKQVEHYLDKEQKLYLAKSFVIGSIINSEGIYKIDTKEHLEALKQASNTQEIMQVEGNFKKLCYKALEELTGWDFEARTKRPPQNPLNALISFGNSLVYAKVLGEIYHTPLNSTVSYLHEPSEKRHSLSLDMAEVFKPILSEGLIIELLKSKAITEKDFLEEAEYCYLNAEGRKKFLRAFDDLLKSTVYHPKLKRNVSLKTLIRLELYKLVKHLTGEEYYLPVNYHSLKR
>NC_015587.1|WP_015419760.1|1085898_1086411_+|CRISPR-associated-protein-Cas4
MYNTSELRFKGTQVAYYLICHRKLWLFTKGISFEDESDYVELGKLLDDTSFSRENKEGVSYEPVSIDFFSTENGLVVHEIKHSSALEPAHILQVKYYIYYLRQKGIKVSHGIIHYPKSKKLLKVELEEQDNELMQEVFKNMDNIIKKDKPPEVINKAYCKKCAYWEYCYG
>NC_015587.1|WP_015419759.1|1083689_1085897_+|CRISPR-associated-helicase/endonuclease-Cas3
MKKILQNLLEERWAKDDGTTIRDHTDKLLENCEKLKNYYKQEIEELMPKGLPYELKERFWEILKLACEYHDYGKIHCKFQEKLGNKNLKCEKPIKELPEVRHNLLSPAFVDIEDELARKIVRLLVLHHHPVEDPSVENVEKVLKEEFGFEKIPIRFMLKKTETDYLRDDVAKIFNISIDELIGYYRLLKGLLLRIDHASSSKKTQEVEDNPPEDTLNFVDEFFKSTKRVPNEMQIFVKENRDKNLLIIAPTGSGKTEAGLIYLKKKGFFMLPYRVSANGIYTRAEGILKDYAGLLHSSALSYVLEKEYSTEDIQNNKGDSIFLNYFLSRNFAKPIIISTPDQLMHFVFRYKGFEKYYATTLYSRLVIDEIQSYDPITLAFMVKALEIIIQNGGKFLVMTATFPEFLRDRFKNMGVVYKELNLQPMIYHNIQVIDDTIDNYVDIINNLSKNAKVLVVVNTVKKAIEVKEKLSNANLLHSRFILKDRKDKEKKIKEFFDANSNGAWITTQLAEVSLDLDADYLFTELSTADSLIQRMGRCNRKGEKPTDKPNVFVFTKDCSGIGKVYYKHLFESTLKNLKDGLWDWAFKWKLVENVYSEQSLKGTKYLERFNKAEEYIKSLWEGTDSLIRSKSQAQELFRDINTISAIPIKFESEVENLMQKWEAVKGNLKERTKIFNEILEYTISVPEWSLKKIKLQKANEKLRRFGVYYLEGDYSEDTGFVIKPEADLEQIDNII
>NC_015587.1|WP_015419758.1|1081495_1083718_+|type-I-B-CRISPR-associated-protein-Cas5
MDCLRFKLYTPTGIFKNPLSIKGVEVYPLPPYSTIIGLIYKAMGKKWNKEHFQISIQGDYETIYRDYVWFKKYNLRDKKLDKLPLQVPILYNLTLLIHIMTENEFLDQIEKALKEPKEVLFLSGGEYPVKVEEVKRVACEKKRISEEDYIKLAYNAYVPKQHLENINTTDKGILFNLSYFYKNSNKYATVHKPKTYHWIDAYYFQKGTYIYGSLMFDGDENPVFLTDLDSDILVEKEQRRQEVCHGSQVCHGSDANEYIRFYSENWLMASACVGVLKVLKKQGERIEDFVEEKTLKIPKDLWEKLPETYADYLLNDSEQLEHALISSYEKEKKKERFNPYNVIILRSFGDFHSNSPFTNPSLSYITKLRGLSISDINNVKSKIKESFIEGYQYFLTKVIETSQVCFFCHERQAKNIVDATNFTPLFSSLDTVKNFIWDPIPICKECEFLLYFASAGFYKSGGKYLFIYIPDNLLETYRLNLVLSTEEEVEQDKLGKIWSVVKHVLGLETQKSSWILQNIYFVEIEMVGNATANIYSFNISPTLAKAIRNLIGKYPKNLQAVFSDFLFYVYTGKSLYEFLLLLISGFIKKESYKNLEIRTIESRIIQTGKKLDYLSKNLLFFIEFQEVLNMSEQKNYIDWAFWEGKKLKGFYTKDPNKEKKLEPLIYRLLEAIRRKDKGYFIHNLIRAYLEVEREIPYVIKESLDDKNFNMIAYAFLIGLNSEEKTEEAQVKNEENITESA
>NC_015587.1|WP_015419757.1|1080522_1081509_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MIGILTLTVVTQRATSLNYGENIGNVSILKKLSLGDNSQLTYVSDKAIKYDIKRKGKEEKGWRLLDEKIKEYIENSKKGKELDVDEFSKSLIKEYHEFDLFGGLLTNLKGDDGKKVDLSYGDSVKRTAPVKTTYAFSVSKFQGDMDFLNNIDAFNRYIKHIEQKEAQAIAQSEQHTTHYYYTIAIDLDRIGVLETENNTVEVIEPEERAKRVKDLLDIIRTFSRQIRGRYENLSPIFVIGGVYKIKNPFFMGCIDAKEIENGKLLLDLNRLLDCKSLIPEEEKENTLCGVLSGFFENEEDIREKLNCKSVGEAFEELKTKVDKVYGLS
>NC_015587.1|WP_015419756.1|1079913_1080477_+|thiamine-phosphate-synthase
MLMELSRYLAIVDVDAFKDDITEKTKKIVETYKPIIMLRAKNLKGKYFYEYAKAIRDITLNYGVLFFVNERFDIALAVGANGVHLPSNALDVSVVKNICKDMIIGYSAHSKENVLEAFQKGADYVTLSPIFPTKSHENATPLGLEYLKDVVKSSKKPIFALGGITKENIDDVFKTGVYGIASIRFFL
>NC_015587.1|WP_015419755.1|1079629_1079914_+|hypothetical-protein
MELLKKYTIELVIYVTSVGLSVMAMGFLADRNFIFGSLFMFMLLLFQVFVILGAKGDKEFPKAYDKDIKDVGLFNALMLLYAGVFTAGILMALA
>NC_015587.1|WP_015419754.1|1076898_1079613_+|diguanylate-cyclase
MSYTVHLALKNEEVLDFLKVEANTPTKYAIQLMANFDKDYVVVVDNNKAVGIFSESDVLKLKYANENLDKNVLEYASKPAITVRSSFNLFEAINLMIENDISKLIIVDDEDKPIGVLTQRTLIKTIDQEMLKRNKNVKDILRQRDLISLSPTDTLSLALKTLVENKIRAVVILEPNNTNSSEFGENEQDTNDGRLVSRGRLVSRGRLVERGRLVGIITQKDLTKLISVGVDLDKALIKDYMKSPVITCRIDTPLIEASKIMASFNIRRLVVVDEKDNPIGIVTQGDIIRNLEEKYEEYVEKKLKHLRSMLNIMQDPVLEVMDTGVFDSSSGIIIWQNDSAKSIFGNFLGKNIEEIIDHYTWKYIYEKLKNEKSVNYEPIFIKDHIYHISCLYVEDEQKIIDGRIKILFKDITKAYKSELELKKINKQYKNILDAMNDMVIIYDAYDYKIKFVNKSTLEHLGYEEEELTNKNFFDIILNSENVIKHFIERVIKENKKVVGRRVYIKKNGEFLPVHVVATRVEFENNTGKEHILVVARDISKELIIEEKLKNTNKDLNMLYSFITDLSKAHQEDEAYDILIHYLKRLGIEYIHMYKLNPSLNKIVSSYLLNTKSIYQLHNENNLWVNDCLEDNPSLCKVIKSGTTLATPNINVDYGCPRIALGSSIKSYMCVPIFIGGIYITNATAILTLMSSKENFFTEVIKNKINKFIEAFIPVVSNLRLMEINKELSIRDPLTNAYNRRFLDEILEKAFQKAIRYQTKLSIIILDVDNFKKFNDTYGHRAGDMALQHLSKVVQENIRVSDIFARYGGEEFMIVLPETPKEYAIEIANRVKDALSSKMFYINSLESKDISTLDIDDIYPKYYITASFGVATFDDDAKNLEELIKVADMRLYKAKELGKNRVVYN
>NC_015587.1|WP_015419764.1|1092209_1092995_-|PDZ/DHR/GLGF-domain-protein
MKKSYATYSLIVGILLILTSILSSYYNIKSLKIVLNQEIPTIPSSFNKKDLMEAISKFAHQKITPQTTSSSSNMEVLAIAYSENPAYSMVLVSSNCGKKVLMVGDSFCGFTIEEIKPFYIIASNDGKTLTLKLSKGAKINSANTPSGLPSLKELLSGSLNQNTYTVNRNELLEITSNPYKMFSDIDLVPTPKGFMFKSVKPGSLFAQMGIKPGDILLSINNESLNSPEDAFRILGTLRNSQSFSVKIIRDNKEITLYYKVE
>NC_015587.1|WP_015419765.1|1092991_1093420_-|hypothetical-protein
MDFRKINISPRYVYFLYRIRYILYVVIFLAIFLEAFNSVKKEKEALYNKIAQYEYISFLIKNGKPKTKTLNENYIRNLFSHTKVDYIKYENGFYNVKASNVDIQTLANIVYQIENDGFKINFLKATDYTGEQNFDLLMEISP
>NC_015587.1|WP_015419766.1|1093401_1094367_-|hypothetical-protein
MLIRGIYLDTSVVLRKIKNSFEIVEKGKEDVTIRVLAVKDAILIKDTSSIDPTLSILDISGYKFLTKKPIDFDTEDIWALALLRALDTMGYDNLYVVFKDVYAYVLCRIENKDIAYYEVIFDKDELIDKLNTLEGDILYDIEDIKATNLRALPMLYIKKGQLIAFGGALKKVKDRFNQIQRISFQKLKKEFVSIGIFVLGILISYLVFLLSVHYQVKIVKEKEKHIFEKAFPNTPIVDIKEQTEAYIIPKDSFKLSKLLLKAYKNLPPDAKVYELFYKDNALSVKSEISSYELSSLENVVSSRNLSEGNKQEVVQKWILGR
>NC_015587.1|WP_012514222.1|1094367_1094754_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MQQEKKYGEIEIEKAALEPWENPAKENDYIIEMSFPEFSCLCPRSGYPDYATIKIRYIPNEYIVELKSLKLWLNSFRNQYISHEAATNTIYNKLFELLKPKFLEVIGDFHPRGNLHTVVRVRSDKKYD
>NC_015587.1|WP_015419767.1|1094944_1096399_+|IS200/IS605-family-accessory-protein-TnpB-related-protein
MKLQSSAVRYAYNRIREGYADKDIYHLIREKFPSLPTRYIPSAINKAKSINKEHETIVFGNREIFEKLCKSHLQGKQREKLKEQWRQNRKYNLISIGTANNTDKGNRLLRFEKKNDELYLRVNIQPRKWIWLKVKRQISSKNDKWAVFLAMLNDLWENKRYFPYTVELKIRGNDIYGYITFDFPVPSTYITKNNGVIGIDTNASPLHLALAEISRDGNLISYERRELHNFLLYEKNRKEYEEWILAHKIVNTAIEKQKAIAIENLNKVNKGYRGDGKAKLRERLTKWNYKSLLSKIESVAIQKGVEIIKVNPAYTSVIGALKYAPILNIDKDIAGAYVIARRAMGFKERIPINYKKLLKDENYINYALERLNNEIQKLKEKIKQEKDKYKQNPLKQELNRILNDVKKLESFQSESSFCKGANGRNLEQTNKAWQVLRVALVIPVLGKVFTRDFSSLKTLLVLGDVDRVASRLVPAQADGATLRK
>NC_015587.1|WP_015419768.1|1096442_1098188_+|ABC-transporter-substrate-binding-protein
MYFAFKILKNPYINGILFTLICFLPIYFSKSPKVSNIPIKTVDLRKAHISIGKTSNIAYIVLASDPKTLNPVLAQETSSTDVIAPLFNGLTRIDLKTMSIKPELASSWKILNNGKTYIIYLRKGLKWSDGKPLTAYDVEFTYNDIYYNPHIPNSIKDTLSVDGKPFKVKALNKYTVEFDLPHRFAPFLQAISAPILPKHILENAVKQNTFNTFWSVSQKPSLIVGSGPYKLVKYVKGQYVEYEANPYYYKSSKNLPYIKRIKAFIIQDKNIALMQFLEGDISYVGLSPEDLSYFALNKPKTPAIVYDLGETPTTTFITFNQNPHADIPKYKLKWFQDRLFRVAISYAIDRKAIASMVYNNMASPLYGPITPANKPYYKKGLFKRYPFNLSKAKKLLIKAGFYYKKGKLYDKDGHRVEFSLITNSDAQDRKYIGAIVKEDLEKIGIKVIFQPIDFNSLVSKLTTPPYQWESVLIGLTGSIDPNDGKNVWYSKGSLHIWYPMEKKPATLWEKELDTLFDEGAKTINQKKRINIYRAAFYLIQYYEPMVFIVTPKSLMTSKVYMKNFYPTVWGFYKKDYMYIER
>NC_015587.1|WP_015419769.1|1098287_1099835_+|2-isopropylmalate-synthase
MDDKRVYIFDTTLRDGEQAPGFSMTIDEKLQMAHQLARLGVDIIEAGFAIASKGDFEAIKLIAEEVKGPTICSLARANETDIERAAEAIKPAERKRIHTFIATSDIHMQYKLKKTKEEVLELAKKAVRFARNFTDDVEFSCEDATRSSKDFLYKIIEEAIKEGATTINIPDTVGYATPLEFYELIKSIKENVPNIDKAIISVHCHNDLGMATANSLMALKAGARQVECTINAIGERAGNAGLEEVAMALVVRKEYFDNLYTNINTKEIYKTSRLLCRITSSFVQPNKAVVGDNAFAHESGIHQHGVLSNPMTYEIMKPEDVGFPSNRVVLGKHSGRHALKSRLQELGIELPEEEFEKLFEEFKALSDKKKYIYDEDIEALIYKDVLKQDNKSLKLISFQVQTGDNLLPTATVSLEINGEKKIFTATGDGPVDAVIKAIEKALPQEPKFLDYSIKALTPNTDAQAEARVLIELNDIKSSGSSTDTDIVKASANAFLDAVNKALFKKQVKEKAIEGV
>NC_015587.1|WP_015419770.1|1099831_1100653_-|shikimate-dehydrogenase
MMNLPNGQTLCYGIFGYPVKHSLSPVFQSFAFSKKNINAIYIPFEVKPEDLEIAIKGAKAMSVKGLNITIPHKESVLEFVDVISDDVKKIGSCNTLLFEENIIKAYNTDYIGFKRALEEKTSLNGKKALVLGAGGTSKAIIYALTSSGVKVYLHNRTIKKALKLKEIFDVEVIGHIEDILQYVDIIVNTTSVGLKDDDEALFDYDKISAHHIVFDVIYKDTALIKKAKEKGAVAVNGLPMLVYQGLESFKIWTGVDAFDIAPQIFELLKAYKT
>NC_015587.1|WP_015419771.1|1100649_1101729_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYWLGLVLKSHIFLFNVLRYITFRALMAVILSFFITLVLSPIFMRKVTALNRLYGGYVREDTPETHSKKKFVPSMGGLIIILSLELSSILLMRLDIAQTWIMAFTVLGFAIVGFIDDFVKLKNKKGISARSKMLGQIVVSFVSALLLYFVVHIDTNLYFPFFKSLKLNLGYFYIVFVMLVLIATSNAVNLTDGLDGLAIVPAMTTAFALGIISYVAGNAVLAKYLEIHYVENAGELAIFGMAVVGAGLGFLWFNSFPAQMFMGDVGSLGLGAALGMLAIMSKQELTLIIAGGVFVVEALSVIIQVSVFKITKGKRVFKMAPIHHHFELNGTPEPKIVVRIWIVSILLAIFTIATLKLR
>NC_015587.1|WP_015419772.1|1101729_1102293_-|RNA-methyltransferase
MSVFIGVLHWPATDRYGNRIITSFTTLDLHDIARPAKTYGVETYYIAHPVDAQREVIQRQIEYWTCQENKDKQFTRYESVALVKLVYNYEEIIEDIISKKGKKPITVGTDARTYPNTISYKELSEAIKSGENDYLILFGTGYGIPKSLMETFDLILEPIYGASDWNHLSVRNAAAIILDRLLSRNRC

Crispr_ID: NC_015587_9

• CRISPR_ID: NC_015587_9
• CRISPR_location: 1151818-1151924
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015587_9

Consensus_repeat	Method
AGAAATGCCGTTGGCACACTAGAGCG	CRISPRCasFinder

spacers of NC_015587_9

>9.1|1151844|55|NC_015587|CRISPRCasFinder
ATAAAATCGCATTTCAGACGCCTGTTTTCTTAACAGACGCTTATTATACGATGTG

CRISPR arrays and Neighbor proteins around NC_015587_9

CRISPR arrays

The CRISPR arrays of NC_015587_9

>merge|NC_015587|9|1151818-1151924|CRISPRCasFinder
AGAAATGCCGTTGGCACACTAGAGCGATAAAATCGCATTTCAGACGCCTGTTTTCTTAACAGACGCTTATTATACGATGTGAGAAATGCCGTTGGCATACTAGAGCG

>NC_015587|9|9|1151818-1151924|CRISPRCasFinder
AGAAATGCCGTTGGCACACTAGAGCG	ATAAAATCGCATTTCAGACGCCTGTTTTCTTAACAGACGCTTATTATACGATGTG
AGAAATGCCGTTGGCATACTAGAGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419819.1|1149798_1150731_-|dihydroorotate-dehydrogenase	unknown	unknown	gnl|CDD|235982
NC_015587.1|WP_015419820.1|1151024_1151369_-|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|225236
NC_015587.1|WP_015419824.1|1154744_1155413_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NC_015587.1|WP_015419815.1|1146103_1147465_-|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235774
NC_015587.1|WP_015419831.1|1159540_1159822_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419826.1|1156194_1156743_-|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NC_015587.1|WP_015419817.1|1147865_1149005_-|Retroviral-aspartyl-protease	unknown	unknown	gnl|CDD|379408
NC_015587.1|WP_015419816.1|1147504_1147849_-|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419825.1|1155409_1156198_-|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl|CDD|237285
NC_015587.1|WP_015419828.1|1157134_1157854_+|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl|CDD|376506
NC_015587.1|WP_015419818.1|1149025_1149802_-|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|223220
NC_015587.1|WP_015419814.1|1144686_1146051_-|YchF/TatD-family-DNA-exonuclease	unknown	unknown	gnl|CDD|223162
NC_015587.1|WP_015419829.1|1157957_1159235_+|phosphopyruvate-hydratase	unknown	unknown	gnl|CDD|234617
NC_015587.1|WP_015419821.1|1151365_1151695_-|nucleotidyltransferase	unknown	unknown	gnl|CDD|224583
NC_015587.1|WP_015419830.1|1159197_1159557_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419822.1|1151966_1153664_-|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|237783
NC_015587.1|WP_015419827.1|1156825_1157095_+|RNA-chaperone-Hfq	unknown	unknown	gnl|CDD|379947
NC_015587.1|WP_015419823.1|1153690_1154764_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_015587.1|WP_015419812.1|1142782_1143643_+|hydroxymethylbilane-synthase	unknown	unknown	gnl|CDD|234612
NC_015587.1|WP_015419813.1|1143651_1144695_+|PHP-domain-containing-protein	unknown	unknown	gnl|CDD|213987

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419819.1|1149798_1150731_-|dihydroorotate-dehydrogenase	gnl|CDD|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	3.48841e-176
NC_015587.1|WP_015419820.1|1151024_1151369_-|DUF86-domain-containing-protein	gnl|CDD|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	1.31581e-34
NC_015587.1|WP_015419824.1|1154744_1155413_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.81888e-50
NC_015587.1|WP_015419815.1|1146103_1147465_-|dihydrolipoyl-dehydrogenase	gnl|CDD|235774	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.	3.41618e-155
NC_015587.1|WP_015419826.1|1156194_1156743_-|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	3.41057e-88
NC_015587.1|WP_015419817.1|1147865_1149005_-|Retroviral-aspartyl-protease	gnl|CDD|379408	pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl protease. This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins.	3.7622e-05
NC_015587.1|WP_015419825.1|1155409_1156198_-|tryptophan-synthase-subunit-alpha	gnl|CDD|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.48631e-115
NC_015587.1|WP_015419828.1|1157134_1157854_+|di-trans,poly-cis-decaprenylcistransferase	gnl|CDD|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	1.06097e-113
NC_015587.1|WP_015419818.1|1149025_1149802_-|polyprenyl-synthetase-family-protein	gnl|CDD|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	4.90991e-64
NC_015587.1|WP_015419814.1|1144686_1146051_-|YchF/TatD-family-DNA-exonuclease	gnl|CDD|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	7.42123e-106
NC_015587.1|WP_015419829.1|1157957_1159235_+|phosphopyruvate-hydratase	gnl|CDD|234617	PRK00077, eno, enolase; Provisional.	0
NC_015587.1|WP_015419821.1|1151365_1151695_-|nucleotidyltransferase	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	9.72446e-33
NC_015587.1|WP_015419822.1|1151966_1153664_-|excinuclease-ABC-subunit-UvrC	gnl|CDD|237783	PRK14667, uvrC, excinuclease ABC subunit C; Provisional.	0
NC_015587.1|WP_015419827.1|1156825_1157095_+|RNA-chaperone-Hfq	gnl|CDD|379947	pfam17209, Hfq, Hfq protein.	8.71228e-32
NC_015587.1|WP_015419823.1|1153690_1154764_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.00192e-22
NC_015587.1|WP_015419812.1|1142782_1143643_+|hydroxymethylbilane-synthase	gnl|CDD|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	4.427e-157
NC_015587.1|WP_015419813.1|1143651_1144695_+|PHP-domain-containing-protein	gnl|CDD|213987	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. HisPPase can be classified into two types: the bifunctional HisPPase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	2.50704e-06

Protein sequences

>NC_015587.1|WP_015419821.1|1151365_1151695_-|nucleotidyltransferase
MANIGRDRKSKQKITIDQLKQKLSELKPILEEKYKVKEIGIFGSYVRGEQTKNSDLDILVDFYEVPDLFTFVELNNLLSKALKIRVDLVMKSALKPYIGKIILQEAIYL
>NC_015587.1|WP_015419820.1|1151024_1151369_-|DUF86-domain-containing-protein
MKIKREIRDYILDIKTECEYLINKSNRLTFEEFLQNEELKRAFVRSLEIIGEAAKNIPKELKQKHPEIKWTSIVGMRNKLIHEYFGVDYLVVWKTIDLRIPELYQVILKLVDEL
>NC_015587.1|WP_015419819.1|1149798_1150731_-|dihydroorotate-dehydrogenase
MDKLEIELFGIKFKNPVWVASGTFGYGVEGANIYDISKLGAVVTKGLSLRPREGNPMPRIAETPCGMLNSIGLQNPGVEAFIKKIYPVIKDIDTHFIANVFGETEEEYIEVIKILEDVPKISAYELNVSCPNVKKGGVVFGQDPVVLRSLIEKIKSFAKKPLLVKLSPNVTDITEFAKICIEAKADGIVLINTLIGMKIDIYNERPFLATKTGGLSGPAILPIAVRMIWQTYEKYGKAIPIIGVGGITTYVDALEHVLAGASAVQVGTANFYKPLSPLDVIEGIKNHLDAKNLKHFKELIGRAHRLDIKQ
>NC_015587.1|WP_015419818.1|1149025_1149802_-|polyprenyl-synthetase-family-protein
MIFDDLRPKIEKRLRELLTPFEPKVLYDAMAYYVFQEGKRIRPVLCVIGGYACDLDEEDAITLGCAIEFIHNYSLIHDDMPELDNDDERRGKPTCHKIFGQDIALLAGDGLLSLAFDILSNESLYKNPKNLAKVVNYVSKNAGIEGMVAGQVYDIKGEKDFLKVASLKTAALIKTSLVIPSILKGVDFSLYEKLGHNIGVLFQLTDDYYDKDGAYVVLGEKPLLKLIQDYKNTIFTLINQTNVSSYLKEYVDFISFGI
>NC_015587.1|WP_015419817.1|1147865_1149005_-|Retroviral-aspartyl-protease
MKKFNLSKELLLNGILIGALSIGLASCGGGGGGSSSSTPLPSSMATYIYAGTDYYNEPIITVYIDGSPVQLLADTGASGLIVNSSAINIPSSDLTSYSFSGTFADGSTYSGTMASATVCLNPNITNTCVVMPIGVITSGNAFPSFGEAQGDFGLDSSLNIMALGSNSSGSYLAGLSYPTYLERQYDINSYTISFYPLSNTFYANVSPNTPIGQISFGTYNGNSSSIISYSGGFPSTTAIFPSYTSSNPSFTAGVSFFDTGSNLNFLTTEVFTTEIPHFSSSDENNCSISSLLNGGYNISYQIPYQNTTNFYNTAFTTEPSSSNLCNFNPPWNLMTGMTIDSGSYQTVGYEDFGLSEMLRHTYVWILNNQGFVQDISINP
>NC_015587.1|WP_015419816.1|1147504_1147849_-|hypothetical-protein
MYIFIGQPLPIEANTKIVNKANISTPYMKIQGKTFTYYVKTNPNGNVQEVIAKSQRNLAPASYFIQNVNACTKKLLLRVPLRMAKWEYDCPQGKFEYTTFGVIGNLITKAKMIR
>NC_015587.1|WP_015419815.1|1146103_1147465_-|dihydrolipoyl-dehydrogenase
MIEVDVLTIGAGGGAYPGAFRLAKAGFSVLMVDKKGVMSGNCLAEGCVPSKAIREQIHTYLRFKAFSKKDIDIDYKDIIAKKDEVQNIRYKLHEEELKAFKNLKLMKGVARFKDEHTVVVESDKGEETIKAKYIIIASGADVFVPPIKGKEHAITSTDIYKLNPNLTYVPKEFAIIGGGYIGLETTFYFANLGSNVYIFEKLDRVLAGIDKYATNTLLKYLPKNIKIFTSVEVQEIGLKDNKKKVVYYKQDDTVKSIEVDEVLMAVGRKPVIPEGADKFLKISKAIEVNRACQTNIPHIYASGDVNGKVPLFHTAIRQSLVCAYNIMANNTPIDYADFDNVPFTVFTIPAMAFVGITKEKAESLNMDIVEASFDLKEDSRAEIYSEEGELKLFFDAKSLKLVGAYIVGTDAEQLVSHLGLAIKLGASARDLAEHQDQHPMTQECISKAARKLF
>NC_015587.1|WP_015419814.1|1144686_1146051_-|YchF/TatD-family-DNA-exonuclease
MIDTHCHLDLLEKEHFEEAINDESLEYLITIGFDKKTCENAVEIASKYDKVYCAVGFHPNDVADITEKDILWLEDLAKSSAKVKAIGEIGLDYYRSKDLKDKQIEYFNIQLELAKKLGLPVVIHSRDAEEDTIKVLESHQNVGGVLHCFSGSLEFMRKGVELGFYISYSGNITFKNAQSLREVVSKTPTYRLLIETDSPWLAPVPHRGEKNKPSFIWHTAKVMSELIPNSSLEDIDRTTSANAKLCFNLGFDKNEDTITYVINNKLYINPTNKCNLHCRFCERERDRNFMVKGYWVWTKRDPLADDIIREIPNPEIYDEIVFCGYGEPTLRMDVIKKVSSYIKSKSPNTKVRVDTNGLYLAFGKKEDLENLRGLVDTFSISLNAPDENTYNDVCRPPYKNAFSLLIEFIKTVKELGFEVITTAVTYPGVDIDATEKLALELGTKFRKREWEVLG
>NC_015587.1|WP_015419813.1|1143651_1144695_+|PHP-domain-containing-protein
MWILFVIICIYAFIIAFGILELLFFILPVKSLKNPSKGQPIDPPEFYVKSFVFHIHTEFSYDSLGKPEDIETARKEEAIDYAIITDHENTHYKCFENDHTIVGTEQKITTEKGIVGSLISVEDLRVVAHPFKKKYIWRLPKEEDLVVELIDLRDAIIASKYKILWRYIASLIPKIFLKKRIYRFFAPALTPEVYIKKYFEQGWKNPIIGGLDHHVKIYVREVGIRLLIPSYKWSFGMLRNFVFSKSKLETKKDIIENIKKGNTVISFVDRPSFFFEKENHILAYLPYENSFSILYEEGIPKSTFLGGYASFEKPQKPSFIVAYSYMFNIKNLYFGVKPIAISNIILP
>NC_015587.1|WP_015419812.1|1142782_1143643_+|hydroxymethylbilane-synthase
MKLRLGTRKSKLALWQANFVKSKLEALGLEIELVLITTTGDKILDTPLSKIGGKGLFVKEIENALMKDEIDFAVHSLKDVPAFIPQGLVVDIFLEREDPKDAFVSKSYKTLNELPPSAKIGTSSIRRKVQLLQKRQDLTIEDLRGNVDTRLKKLEDGLYDAIILASAGLKRLGFEGVISSYLDFIPAVGQGIVAIEYKASNKELSNILRQINHEPTYICALAERSFLETVEGNCQIPMGAHATLTQDLIKIRGFIANEDGTNYRELTLEGKDPIGLGKDLAKNLLL
>NC_015587.1|WP_015419822.1|1151966_1153664_-|excinuclease-ABC-subunit-UvrC
MDIVALIEKAPEEPGVYIFKNQKHYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSKELEWIVTRNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDEYPTVKITRDTSQKGEAFGPFLNINKAIKIKKLIHATFRLRTCEEMPKRPTPCMDYHLGLCSGPCANLISKEDYAISVKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQGVFLYDIEEADVFYLEGYSLWLFIIRNKRLVAHKEFRLNKELIINYEEMLGTYYMSNIVPKKIVANFELTENFRLFIKSKRKDVAFSNNIPKPLLKIIEKNVVLKPDTKEFESEFYKLFGRKAPKLIECFDISHFQGQYTVGSMVVWEDGSLNKSKYRRYRIKTVDYIDDFASLKEVLSRRAKRIVSKEDQTPDMWLIDGGKGQLSMGIEVKEKFLLNIYICSLAKKEEIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFAITYNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIRSDDEKLKKLGISKSIKDQVRKMLGEN
>NC_015587.1|WP_015419823.1|1153690_1154764_-|HAMP-domain-containing-histidine-kinase
MATGLFRNIFINARLKFAVLNSFIFIIIMGLFYYLLYNLYVSYAEEIIKNRSEDIAKVALLKAVEKKLFTLPPGFSITIERNHKIYYSANNMDKDDKRAIKLKDRFEYNGKIYTVFLKASVEDIVESEKRIMFYASLVFFGLTMVVFGISYWFSGIFLKPIEDYTQKLDIVLKGSMHAINTPLSILKLSDIKDKRAKEAISRIEDAIGRVKSIFISKPSQETLLNINAFVEDALDALEDSLESKNIAVNLEENTTLKVYGDPVDISMIIENIFDNAIKYNKENGFINVKISSSKLVVENPSEPIKDTSRLFELFYREDESKEGLGLGLYIVKTLCERNGISVKAKYENGIFRIVLEW
>NC_015587.1|WP_015419824.1|1154744_1155413_-|response-regulator-transcription-factor
MKVLVVEDDKILLELLCKKLKENGFLCEGAENAQDAILYLKAEAFDVICLDIMLGKDSGINLCKDIRELNKESSIIFISAIADLSTKTKGFEECLADDYITKPFSVEELILRIKAVVRRKHNIKGSVVKLRENVLYDMDRKVLIVDGEEKELTRKLACILETLILKAGKLVSYEMLMQNCWDMAEAPSQDSIRTHLKLLRKLLKEENKDLIRNVPGLGYRLV
>NC_015587.1|WP_015419825.1|1155409_1156198_-|tryptophan-synthase-subunit-alpha
MNISEVFGLLKQKNKIALLSYMVAGYPDLETSYKAFDILLEQGSDMIEIGFPFSDPVADGPTIQEAHTVALQNGITHKDIFDLSKSLKTKHKDKPFLLMTYFNPIFKIGLDRFFEEAKESGIDGFIIPDLPAEEAQGVKDALEQRSLSLVMLLAPTSFKNNRVQSVCEMSSDFVYMVSITGITGARDKLPIESIKEYTTNYRKHCHKPIVLGFGISSKEHIDSLKSYVDGVVVGSHFVKSLKQRGLEGLKEEAKKLSEATYL
>NC_015587.1|WP_015419826.1|1156194_1156743_-|ribosome-recycling-factor
MIEDILKEAEESMKKSINHFKSELAGFRTGRASTSLVEDIKIEYYGSRVPIKQVGNVSVPEPNQILIQVWDQNAISPIEKAIMEQLSLNPARQGNTLRITLPPLTQERRKELVKLLHKTTEEAKVAIRNIRRDAKEMIESLEGISEDEIKRALDKLQKITDHYIDEISNLSSSKEKEITELK
>NC_015587.1|WP_015419827.1|1156825_1157095_+|RNA-chaperone-Hfq
MGSKNAARLQDLMLNQIRKSKVKVSIYLLNGVRLQGKVRSFDLYTILIEDGKQQTLVYKHSITTIIPAERIDLNFNEIEEEEEEENYNI
>NC_015587.1|WP_015419828.1|1157134_1157854_+|di-trans,poly-cis-decaprenylcistransferase
MDLNVPKHIAIIMDGNGRWAQEKGKSRFYGHYAGAEVVEPVTLKAKELGVGYLTLFAFSTENWKRPKEEIDVLFKLFKEYLIRKEESILKNGIKMKFIGRKDRIPQELLQYMDSIEQKSEKNNAITLTLAVDYGGLDDITRAFNKLLSSGRLVSQKNQVTQEDIKRALDTHFLPAVDLLIRTGNEKRISNFLLWDIAYAEIFFCEKYWPDFTPEDLCMIVEDFSKRKRRFGAVQPVDMI
>NC_015587.1|WP_015419829.1|1157957_1159235_+|phosphopyruvate-hydratase
MSKIADVKAREVLDSRGNPTVETEVLLESGAMGVAIVPSGASTSSKEALELRDNDERYFGKGVLKAVENVNKEIAKAIIGLDASNQTELDLTLIELDGTDNKSNLGANAILSVSMAVARAMANELRIPLFAYLGGVFAKKLPVPLMNIINGGVHADNPLSIQEFMIVPYGAETFSDALRMASETFHVLKSLLKENGFATCVGDEGGFAPNLESTEKAIEFILKAIEKAGYTPGEDIAIGLDFAASEFYKDGIYTIDGKQYDKEELLNFCIKLLENYPIISLEDPASEDDEEGWQMITESLGDKVQIIGDDVFATNPKIFADGIEKGIANAILIKLNQIGTLTETLETIAMAKQYGYNTVISHRSGETEDTFIAHLAVGTNAGQIKTGSLSRSERIAKYNELLRIEEYLGYGAMYASKEEFWPFLQ
>NC_015587.1|WP_015419830.1|1159197_1159557_+|hypothetical-protein
MRQKKNFGRSYSNFITLGFFSLAIFYTIWNIFISSSNIFSLIALEKSNAPIEALLKKEEDRYQYLYAKKQQIDENPNFFMKKFAAEYMQMQRPNEKIVILPKSLWFKKPEDDTKDESSK
>NC_015587.1|WP_015419831.1|1159540_1159822_+|hypothetical-protein
MNPQNSLLNQLLGSLPFHINLSSLMYAIVVDTIIYFATIWAIVYISHKYDAIHLRKPAILSYTILSLFFISILKFALLSLAFIGIIYLLSNLL

Crispr_ID: NC_015587_10

• CRISPR_ID: NC_015587_10
• CRISPR_location: 1214987-1215088
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015587_10

Consensus_repeat	Method
GAAATGCGATTGCATCGCTCTAGT	CRISPRCasFinder

spacers of NC_015587_10

>10.1|1215011|54|NC_015587|CRISPRCasFinder
GTGCTGTAAGCATTTCTCTGAACTTTGGAGTGCCTGTGAATGCTCCTTAGACCA

CRISPR arrays and Neighbor proteins around NC_015587_10

CRISPR arrays

The CRISPR arrays of NC_015587_10

>merge|NC_015587|10|1214987-1215088|CRISPRCasFinder
GAAATGCGATTGCATCGCTCTAGTGTGCTGTAAGCATTTCTCTGAACTTTGGAGTGCCTGTGAATGCTCCTTAGACCAGAAATGCGATTGCATCGCTCTATC

>NC_015587|10|10|1214987-1215088|CRISPRCasFinder
GAAATGCGATTGCATCGCTCTAGT	GTGCTGTAAGCATTTCTCTGAACTTTGGAGTGCCTGTGAATGCTCCTTAGACCA
GAAATGCGATTGCATCGCTCTATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015587.1|WP_015419878.1|1207135_1208578_-|hydrogenase-4-subunit-F	unknown	unknown	gnl|CDD|235805
NC_015587.1|WP_015419889.1|1220466_1221303_-|bacteriocin-family-protein	unknown	unknown	gnl|CDD|377362
NC_015587.1|WP_015419892.1|1225609_1226671_-|TQO-small-subunit-DoxD-domain-containing-protein	unknown	unknown	gnl|CDD|377896
NC_015587.1|WP_015419879.1|1208574_1209243_-|hydrogenase-4-membrane-component-(E)	unknown	unknown	gnl|CDD|226688
NC_015587.1|WP_015419884.1|1216104_1216650_-|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl|CDD|235477
NC_015587.1|WP_015419880.1|1209252_1210170_-|NADH-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl|CDD|223723
NC_015587.1|WP_015419888.1|1219531_1220455_-|manganese-catalase-family-protein	unknown	unknown	gnl|CDD|153097
NC_015587.1|WP_015419885.1|1216640_1218605_-|transketolase	unknown	unknown	gnl|CDD|223100
NC_015587.1|WP_015419874.1|1203486_1203846_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_012514339.1|1201851_1202112_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|376540
NC_015587.1|WP_015419875.1|1203889_1205113_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419881.1|1210162_1212028_-|NADH/Ubiquinone/plastoquinone-(complex-I)	unknown	unknown	gnl|CDD|235820
NC_015587.1|WP_015419877.1|1205702_1207139_-|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl|CDD|225800
NC_015587.1|WP_015419876.1|1205198_1205693_-|NADH-ubiquinone-dehydrogenase	unknown	unknown	gnl|CDD|225799
NC_015587.1|WP_015419887.1|1219245_1219545_+|rhodanese-like-domain-containing-protein	unknown	unknown	gnl|CDD|238089
NC_015587.1|WP_015419890.1|1221356_1222901_-|ATP-binding-protein	unknown	unknown	gnl|CDD|313108
NC_015587.1|WP_015419883.1|1215289_1216108_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|366154
NC_015587.1|WP_015419891.1|1225050_1225575_-|GGDEF-domain-containing-protein	unknown	unknown	gnl|CDD|143635
NC_015587.1|WP_015419886.1|1218815_1219022_+|hypothetical-protein	unknown	unknown	unknown
NC_015587.1|WP_015419873.1|1202122_1203310_-|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl|CDD|377920

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015587.1|WP_015419878.1|1207135_1208578_-|hydrogenase-4-subunit-F	gnl|CDD|235805	PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.	3.95958e-139
NC_015587.1|WP_015419890.1|1221356_1222901_-|ATP-binding-protein	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.56726e-122
NC_015587.1|WP_015419879.1|1208574_1209243_-|hydrogenase-4-membrane-component-(E)	gnl|CDD|226688	COG4237, HyfE, Hydrogenase 4 membrane component (E) [Energy production and conversion].	2.00626e-20
NC_015587.1|WP_015419885.1|1216640_1218605_-|transketolase	gnl|CDD|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_015587.1|WP_015419880.1|1209252_1210170_-|NADH-quinone-oxidoreductase-subunit-H	gnl|CDD|223723	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion].	3.88767e-51
NC_015587.1|WP_015419888.1|1219531_1220455_-|manganese-catalase-family-protein	gnl|CDD|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	6.53054e-25
NC_015587.1|WP_015419889.1|1220466_1221303_-|bacteriocin-family-protein	gnl|CDD|377362	pfam04454, Linocin_M18, Encapsulating protein for peroxidase. The Linocin_M18 is found in eubacteria and archaea. These proteins, referred to as encapsulins, form nanocompartments within the bacterium which contain ferritin-like proteins or peroxidases, enzymes involved in oxidative-stress response. These enzymes are targeted to the interior of encapsulins via unique C-terminal extensions.	1.98253e-103
NC_015587.1|WP_012514339.1|1201851_1202112_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	9.4902e-13
NC_015587.1|WP_015419887.1|1219245_1219545_+|rhodanese-like-domain-containing-protein	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.9069e-11
NC_015587.1|WP_015419881.1|1210162_1212028_-|NADH/Ubiquinone/plastoquinone-(complex-I)	gnl|CDD|235820	PRK06521, PRK06521, hydrogenase 4 subunit B; Validated.	2.53881e-147
NC_015587.1|WP_015419877.1|1205702_1207139_-|NADH-quinone-oxidoreductase-subunit-C	gnl|CDD|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	2.92001e-112
NC_015587.1|WP_015419876.1|1205198_1205693_-|NADH-ubiquinone-dehydrogenase	gnl|CDD|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	9.16327e-48
NC_015587.1|WP_015419892.1|1225609_1226671_-|TQO-small-subunit-DoxD-domain-containing-protein	gnl|CDD|377896	pfam07680, DoxA, TQO small subunit DoxA. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in BT_0515.	2.07005e-53
NC_015587.1|WP_015419891.1|1225050_1225575_-|GGDEF-domain-containing-protein	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.91704e-49
NC_015587.1|WP_015419883.1|1215289_1216108_-|glycosyltransferase-family-2-protein	gnl|CDD|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	4.48746e-33
NC_015587.1|WP_015419884.1|1216104_1216650_-|ATP-dependent-protease-subunit-HslV	gnl|CDD|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	2.0099e-111
NC_015587.1|WP_015419873.1|1202122_1203310_-|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl|CDD|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	8.73678e-54

Protein sequences

>NC_015587.1|WP_015419881.1|1210162_1212028_-|NADH/Ubiquinone/plastoquinone-(complex-I)
MFFYKKVSKDLWRFLEVGFSLLYIGIFLGCIALFIKGDNNTIHLNTTIKYIIYSFYVDRLSLFFIGIVAFNGAINSIYTLDYIEEENYDKKILMTMLKNIFILSMILVLLSANVFTFLLFWEVMSILSFFLVLWDFKKEENYKASLIYIVMTHIGTAFILLSFVGFYINTNSLSFDHWQNLSLNTFWTTWIFLFSVLGFGMKAGIIGLHNWLPKAHPVAPSFVSALMSGLMIKMPVYMFIRYWFYFIKQYPASFGLLILTIGTITMLFGILNASVQNRLKAMLAYSSMENIGIIYAGIGLAMIFKSLNIEYLYALALGASLFHILNHSLFKSLLFMSAGSLMARAHTQEIAKLGGAIKYAPKLGTITLVGMLSLVALPPFNGFISEWLLYQSLLLSLKVKGYYLWIASPLSASFLALTGGIAMLSAVKYFGLTFLGNPRKDIKHKEDIKTMGLISMGILALSCLLVGVLPVFVLDVINKLIPVPIHVNGIFEIKTPENFGSIAPFFIGILMVFMLLISIYLNKYISKHSIYYKTWACGQEDVPLSAQYSPEGFSQPIKKITSKLYKDGLDIFDGIYGFIAKSLLNKLQTLKYKIQPGIIHVYILYMAITLIILIWVSKIYG
>NC_015587.1|WP_015419880.1|1209252_1210170_-|NADH-quinone-oxidoreductase-subunit-H
MGNIVIGILQIVIFIALAPAIKGFIHKIKLNLRGQKGPSILQPYKDLIKLFRKEPVISKDASFISKIAPIVVLLATIISASFIPIFSPNTLLSFTGDVIAFMYVLGLSTFFIALYGLDQGSSFGGLGSAREMTIASLAEPTLMMIMFTFSLEYGTSNISEIFVKAHSHSFNVPIAYVFSLLALFFVSMAENARIPFDNPETHLELTMVHEAMILEASGKYLAIFELSSYMKLLLFISIASNIFLPFLYSSNMLLNILFYIIKVIIFSIPIALVELSVAKFRFFRIPDLLMISFALATLGFVLYYA
>NC_015587.1|WP_015419879.1|1208574_1209243_-|hydrogenase-4-membrane-component-(E)
MNLNISLSEFVEFMAALSLFFAILQTASHRLDFAIKTYTAQSIALSITMFLSVFYYFDYELILSAVLTLLIKGILIPFVMKKITDKIVEDENVKPFVNLTYSVLICIFIVIFSFYITSNTFYRSTDNGTMQKVLAIGLSIIFVGIFLMLARKKALIQIIGFLTLENGIILGATSTVKGLPLIVEIGVFFDVFVGAIMAGILIFHIKDTLESIDTSKLSDLKE
>NC_015587.1|WP_015419878.1|1207135_1208578_-|hydrogenase-4-subunit-F
MITLLLLTELIGIVVIPFLDFNKNKYIQAFLQFINVVVFLYLFKSLKTNGPYYGTYFTLDSLNIVLIGIVSVVGFLTYLYSIGYLEKEKSLKESKIKEFYLWINTFMFSMLLLVSTSNLGIMWVSIEATTLSTTFLISFYKNKTAVEASWKYIMLCSLGIALALFGIILIYFGVINIIGGGLYSLDWQNIMPIADKIDKNLLKIAFVFVLVGFGTKMGLAPLHFWLPDAHSEAPTPISALMSSVLLSCSFYTIIRIFSIESKAGIGAFTYDTMLYIGLFSIVLASIFIPRSRDYKRLLAYSTMEHMGILAFSLGLGSFEGIFASLLGLIAHALTKALMFMSSGSILVNLHTKSIKDIRGLFKILPITATFLAVGVFAITGAPPFLLFISEFLTLVSAFKEGFIWQGIVVLLALSLIFFGFIESFFGMLTREPTFEQKKEHMFMLIPMGILVILIVGLGLFIPNDIKSLLENAVYTIGVRR
>NC_015587.1|WP_015419877.1|1205702_1207139_-|NADH-quinone-oxidoreductase-subunit-C
MKHYIESLLHSDDHQFLGVFVSDDLEKEGVFKIRYLFCDIKSKKLNTVELNVKDTFPHIDIPVLDWYEREIYDMFGLIPEGHPNLRPLMLFPENYPKDFHPLRKDANMNIKYEGYKTYPYEDFDPEGSFKILVGPIHAGIIEPGHFRFTLIGEPILKLEIRHFYKHKGIEKLSEGKTPEESLKLSERISGDHSVAHSLAFVKAVEKIYDIDIPPKARYIRAILLELERLMCNLNDFAFIFQDVGYSFGAQKVFALKEMLMRLNETLTGNRFNRNIIKIGGVSKELDTKAIKEVLGLLEKEYLKYKKLFLNSSTVLERTDTTGRIFYKTAKKHAALGYVAKASNIFFDTRAILEKDLYGSLVKAFKLEKGDVSARVKVRFNDIEESFNIIKTFIENMPLGDIAKNIEPKDGEAFGYEEGQRGNITHFLRIEHGLISRWKIRDPSFHNWPIIQKAVLGDIIADFPLINKSLNLSYAGNDL
>NC_015587.1|WP_015419876.1|1205198_1205693_-|NADH-ubiquinone-dehydrogenase
MLNILKSFLKEGIKTEDITPYNEQNIVIYKKLPKHLKGSLNIRHVDCGSCNACEYELTALSNVFYDIERFGIKFVASPKHADALTISGPITRNMYKPLLDAIQNTPNPKVIIAIGDCSIDGGLFKGAYGIMGGLKDINIEPHILIRGCPPHPRDIISGILKGFD
>NC_015587.1|WP_015419875.1|1203889_1205113_+|hypothetical-protein
MQKREKMYLLDTNIISFLVKENKTREKEEDKIKEERIVYEVFKLKAQNAIIRIPITSYIRRYYSMNLITNFGKKVAQIAYVVFVILFVLYFIFSVKSLPNVNNFEKAGIIFLFFLPVILFICVILLVKSDYKKLSDYKKLFYNSIMVACFMLFLFLGLVLSENLRFLKANRLNAGFILFILYVLALKESKELLPETDSKLLELVSKLSSCLKIEVPISVIIIIGLFNYSFANHSFACFVAVIIIIILNLLRKRNVENITRIIRRALAEMPVHIIYFFAHLLYFSRLLIIYILNLLRKRNVENITIIIRRALAEMPVHIIYFFAHLLYFSRLLIIYLIFLSVFIKSNVYGFIKSISCIKSIIVIKPDLKFYIMGIFIILFDLIVNYFIVYIVDKFNIVDELNKKLFKK
>NC_015587.1|WP_015419874.1|1203486_1203846_+|hypothetical-protein
MKTINIKQPLEKKSLKTRANFGYLANVPKNTNSYNPQRLINKKEQKFKERLINLINEVYSEDEIYQQTYNSKEEIIRRILRAFDESPIKYHLSNEQIKKAIRGMLALELIIGIAPEPSL
>NC_015587.1|WP_015419873.1|1202122_1203310_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MDIKVICNGKPVGTLFEGDQSKGLKEYVFEYLAFKESDIYSLYNSISLSMPSSQRIYVSKLYLHPFFDSFLPEGYLFEILKDLINKREGKVDDFAMLGYLAPGIEGRVSFEGESLPVPTNISLEDIITNDTWDTFRELLYMFLQKNAISGVQPKTIAVIKDKTSLDFKEFIVKTYGDEYPNLVENEYFCMKTIEKIGVKIPKIYMSENKRFLVIEKFIYDEKGYLGFEEVGSILGRRRYDKYEGSYEQIAKAIKKLSTDTLKDLETYYKMIVLNFLIKNGDAHNKNFGFLYKSDMSYIWLAPAYDVVCTTVYIKDDKPALFLGGTKRWVSKKELVEFGLKYCALEEKTAIEIFNNCQQALAESIDDIKSYIKQNKNFQEIGNRIIKEWEHSLNQT
>NC_015587.1|WP_012514339.1|1201851_1202112_-|helix-turn-helix-transcriptional-regulator
MDYERLGKFLKKKRKEKGWTQDEIAKRVGLSRQTISKIENGVMARVSLIHMEALLRLIGYDMCIIPHNPFSKEEPFMCKEDLEWEE
>NC_015587.1|WP_015419883.1|1215289_1216108_-|glycosyltransferase-family-2-protein
MKCISVVIPSYNASKFLLKAINSVKNQTYLPKELIVIDDGSTDNIKELLKDIKLPFDFRLLTNEKNKGRSYSRNLGAKESACDFVAFLDADDIYFPHHLEELSKEKGDLVYSIPRTFIDEEDKIIRVSKKAYPDLKSMILGGMVGYPSGIMVKKERFLAFNESLHQREDWELFLRYYKNNLDIKIIDKNTVGIREHGKRTSRSKEYFDYTMKVYKMHKDIADANMYLSISETAFRFKEKSLGFEFLIKALKQNPKALDIRRLWNIIKRIPKV
>NC_015587.1|WP_015419884.1|1216104_1216650_-|ATP-dependent-protease-subunit-HslV
MDVKDKLLHATTVIAVRKNGQTAIGSDGQVTLGSQILKHGARKIRRLHKGTVLVGFAGGAADGLALMERLEGKLEEHRGNLARAAVELAKEWRTDRYLRRLEAVLIACDKESMFLLSGNGDVIEPDEPILATGSGGDFARSAAKALYYHTDKSAEEIVKISLDIASDICVYTNKHFSIELL
>NC_015587.1|WP_015419885.1|1216640_1218605_-|transketolase
MNIDELVINSIRFLSVDAVEKANSGHPGMPLGTAHIGYILFDRILRYNPENPKWVNRDRFVLSNGHGSMLLYSLLYLYGFDLTLEDIKNFRQLGSKTPGHPESFLTKGVEATTGPLGQGIANAVGMAIEQKHLGAICNKLDEPILDYKVFCMVGDGDLMEGISYEAAALAGHLNLDNLFIIWDNNHITIDGDTSLAWSEDVLKRFENAGFTVRHIEDGYDIGLLEKTIKELLTNQTKPVFLSVRTHIGYKSIKQDSAEAHGAPLGKEAIAKLRESLNWPYEPFHIPQEVLDYTRRKVEEGRILEQKWQEKLLKYKETHKDIVDILTKNINLENVISHIPRFTEDMATRQASGKVLNAIAPHMPTLFGGSADLHESNNTYIHNEGDFEATNYYGRNIHFGIREHAMGAIANGMAYGGITTPYVATFLVFSDYMRPSIRVAALSKLHVIYIFTHDSIGVGEDGPTHQPVEHVPSLRLIPNLWVMRPCDANETAYCWELALRRKDGPVALILSRQKLKTLDRTKYTKENMTKYGAYVLSGAPNQEFTIIASGSEVGLALALQDKLAENGIQSSVVSAPCLELFEMQDEAYKKEVIPKNTKHIVIEAAKGDIWYKYVNKDALVISMETFGKSGKGPEVMKHFGFDEEYIYQKVKEKWM
>NC_015587.1|WP_015419886.1|1218815_1219022_+|hypothetical-protein
MRNLIVSAPRMLALLGAVLFIGASAQASQTYKETGISAKAANQSYLLAEDENKQEDNSEDNSKEDSED
>NC_015587.1|WP_015419887.1|1219245_1219545_+|rhodanese-like-domain-containing-protein
MLKHTKTLLDVRMDKKEFDVDKVMDMFCCKEYIYIPFDEIVDNENLEYMLDKSKEYFVVCNSGNKSKYVVDMLNSLGFKAFNIEGGLKGLLEDDKLNVS
>NC_015587.1|WP_015419888.1|1219531_1220455_-|manganese-catalase-family-protein
MDNKTIIEYLNYNISLEHSAIIQYLFHAYTINDEGLENKLEEIAREEMKHLRMFAHKVVELNGIPAIDKRAQVFLEAPTLQDLLQLDIEAESMAIEEYSKQLSNIEDKSIKKIFERIIDDENSHLHIFKDLQKKVLETSKEFGENPILDENKLKIVSTLNTFLQKQYQTILETLYQSFVTRHKDMSLSDELEQRAIDKMKHMGWIAEEISEKGQKPNFSLPNNVNTLENKDEIIAYQIKDQETSSNQIKAIESSVEDSDLKWILDRISRREIHYKDLEAFLENPKTKEEDIAKVVNALTVGSLFKKH
>NC_015587.1|WP_015419889.1|1220466_1221303_-|bacteriocin-family-protein
MNFLHREESPLTAQEWQTIDNIVVNTARNHLVGRRFIELTQALDPAIQSVAYDTIPSLDNGACGLFGEKECGIAKIKSRKFLPIPQIYKDFKIHWRDIETSRKLNIPLDVSVVALATREVALAEDRFIFHGDSEIGYPGLLNVEGRSIIKNKNFDEEGGIFKTALACVETLVEKGFSKNLAYILNPKDYTKAFRIYGNSGVLEITHIKELFDVGVFTSHAVDEGKTIAVATGVENMDIFLVQDMISAFIDYENMDYYFRVFEILAFRIKNPSAVVTTE
>NC_015587.1|WP_015419890.1|1221356_1222901_-|ATP-binding-protein
MKYLPIGIQTFRDIIEGGFYYVDKTQFIPKLTSKYYFLSRPRRFGKSLFLDTLKEAFSGNKELFKGLYLYDNWDWEKRYPVIKISFASGNIRTSDILLDLMTSQVNRISEKEQINLKEKRPSQMFLELIQKLYEKYNQKVVVLIDEYDKPILDAIENIEIARENREILKDFYSVLKDADSYLKLVFLTGVSRFSKVSIFSGLNQLQDITLNEEFSTVCGYTQSELESVFSDRLKDFDKEKIKQWYNGYSWLGESVYNPFDILLLFSEKRFRAFWFETGTPTFLIKMFMKNRYYIPELENLEVGEEILSNLDVDNIRVENLLFQAGYLTIKEFLEEDGVYILSYPNLEVRKSLNNAFLFYLDFDASRITKTELNIKQILKEKNIDKLKDAIYTFFASIPHDWYRKNDIDSYEGFYASIVYALFNGAGLNVIAEDNTNKGQIDLSVFNQDSVYIIEFKVVEDKEEGGKALEQIKEKRYYEKYKSKYNDIYLIGIEFSKKDKNIVGFEWEKVSTFYI
>NC_015587.1|WP_015419891.1|1225050_1225575_-|GGDEF-domain-containing-protein
MQFFLHTSKINNIGNHSSSKHAKHSYNIRYSRRTKTAPFSLIIFDIDDFKKINDAYGHDAGDLILKRISELVKANIRQEDIFCRIGGEEFAIILKQIDIFGAYVVSEKLRKIVETTDFTYKDKTIKTTVSLGVAEFGKNDTKETLFKKADRALYVSKTSGKNMSYLFFGDFMEV
>NC_015587.1|WP_015419892.1|1225609_1226671_-|TQO-small-subunit-DoxD-domain-containing-protein
MESVSGYSSKSVSNSNIDILQLLAFVVLPVRLVYAWMYISAPLRRVVLASGKLDPNSPLWVGHKFNSFLPHASNILWLHDFVRYLVLHPDLLASFLWVFTIIEFLTGLGIALGLLSRLSAIGGTLLPLGMLLGAGWQGATCLDEWQIGSTGVAMGLTLFFAGSGVLSVDCLLMNKYPKLKESGWFKWLGSGPIFDNPAFNKIAIVGALFALFVTMGTNQYFQGGVWGKLHNFGKVLDVKVSNAHIQNGNLVFEAYRISGSSAAMAWIPKIDLIKDGKVIYTWDQKAITSLPPSSIKNIYINKAKINQYALGMRLGAKAIITLPLPQNLNLTHGQYTLVLHEIGGQKFSTTFTY

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015587_5	5.15|929025|36|NC_015587|CRISPRCasFinder,CRT	929025-929060	36	NC_015587.1	1337724-1337759	0	1.0
NC_015587_5	5.32|929026|36|NC_015587|PILER-CR	929026-929061	36	NC_015587.1	1337724-1337759	0	1.0
NC_015587_8	8.1|1088904|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT	1088904-1088942	39	NC_015587.1	578152-578190	0	1.0

1. spacer 5.15|929025|36|NC_015587|CRISPRCasFinder,CRT matches to position: 1337724-1337759, mismatch: 0, identity: 1.0

atatcatttttatagattagagtcaatattgtaaaa	CRISPR spacer
atatcatttttatagattagagtcaatattgtaaaa	Protospacer
************************************

2. spacer 5.32|929026|36|NC_015587|PILER-CR matches to position: 1337724-1337759, mismatch: 0, identity: 1.0

atatcatttttatagattagagtcaatattgtaaaa	CRISPR spacer
atatcatttttatagattagagtcaatattgtaaaa	Protospacer
************************************

3. spacer 8.1|1088904|39|NC_015587|PILER-CR,CRISPRCasFinder,CRT matches to position: 578152-578190, mismatch: 0, identity: 1.0

acttatgcaaaagtatctattacattagaactatcaaac	CRISPR spacer
acttatgcaaaagtatctattacattagaactatcaaac	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NZ_CP007164	Virgibacillus sp. SK37 plasmid pSK37387, complete sequence	3039-3073	7	0.8
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NZ_CP007164	Virgibacillus sp. SK37 plasmid pSK37387, complete sequence	3039-3073	7	0.8
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	62824-62857	8	0.765
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	MK250021	Prevotella phage Lak-B2, complete genome	438047-438080	8	0.765
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	MK250023	Prevotella phage Lak-B4, complete genome	437257-437290	8	0.765
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NZ_CP026694	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP2, complete sequence	20066-20100	9	0.743
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	CP053577	Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence	196042-196076	9	0.743
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	MN693954	Marine virus AFVG_250M569, complete genome	37313-37347	9	0.743
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NZ_CP026694	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP2, complete sequence	20066-20100	9	0.743
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	CP053577	Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence	196042-196076	9	0.743
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	MN693954	Marine virus AFVG_250M569, complete genome	37313-37347	9	0.743
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NZ_CP041212	Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence	46011-46044	9	0.735
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	65604-65637	9	0.735
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NZ_MH382833	Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence	857-890	9	0.735
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	25007-25040	9	0.735
NC_015587_7	7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR	1024231-1024264	34	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	83598-83631	9	0.735
NC_015587_5	5.5|928366|38|NC_015587|CRISPRCasFinder,CRT	928366-928403	38	NZ_CP045218	Pantoea dispersa strain BJQ0007 plasmid unnamed2, complete sequence	322-359	10	0.737
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NZ_CP046974	Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence	35494-35528	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	108001-108035	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	110523-110557	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	MH321490	Staphylococcus phage Quidividi, complete genome	2111-2145	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NC_028940	Pectobacterium bacteriophage PM2, complete genome	1914-1948	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	MH321491	Staphylococcus phage Twillingate, complete genome	3393-3427	10	0.714
NC_015587_5	5.22|928367|38|NC_015587|PILER-CR	928367-928404	38	NZ_CP045218	Pantoea dispersa strain BJQ0007 plasmid unnamed2, complete sequence	322-359	10	0.737
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NZ_CP046974	Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence	35494-35528	10	0.714
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	108001-108035	10	0.714
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	110523-110557	10	0.714
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	MH321490	Staphylococcus phage Quidividi, complete genome	2111-2145	10	0.714
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NC_028940	Pectobacterium bacteriophage PM2, complete genome	1914-1948	10	0.714
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	MH321491	Staphylococcus phage Twillingate, complete genome	3393-3427	10	0.714
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NZ_CP007602	Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence	51247-51281	11	0.686
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	44990-45024	11	0.686
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NC_023917	Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1	45210-45244	11	0.686
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NC_023918	Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1	45192-45226	11	0.686
NC_015587_5	5.8|928562|35|NC_015587|CRISPRCasFinder,CRT	928562-928596	35	NZ_MK275619	Clostridium perfringens strain JXJA17 plasmid p1, complete sequence	22321-22355	11	0.686
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NZ_CP007602	Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence	51247-51281	11	0.686
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	44990-45024	11	0.686
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NC_023917	Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1	45210-45244	11	0.686
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NC_023918	Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1	45192-45226	11	0.686
NC_015587_5	5.25|928563|35|NC_015587|PILER-CR	928563-928597	35	NZ_MK275619	Clostridium perfringens strain JXJA17 plasmid p1, complete sequence	22321-22355	11	0.686

1. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NZ_CP007164 (Virgibacillus sp. SK37 plasmid pSK37387, complete sequence) position: , mismatch: 7, identity: 0.8

ttgcgagaaaagaaaa-----tgaagaaaatcttaaaagg	CRISPR spacer
-----agaaaacaaaagaacttgaagaaaatcttaaaaga	Protospacer
     ****** ****     ******************.

2. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NZ_CP007164 (Virgibacillus sp. SK37 plasmid pSK37387, complete sequence) position: , mismatch: 7, identity: 0.8

ttgcgagaaaagaaaa-----tgaagaaaatcttaaaagg	CRISPR spacer
-----agaaaacaaaagaacttgaagaaaatcttaaaaga	Protospacer
     ****** ****     ******************.

3. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 8, identity: 0.765

----aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
ctccagat----gaaataatgaatctcatattaaaaca	Protospacer
    *.**    *************  *********.*

4. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 8, identity: 0.765

aaatta--gggaaataatgaatcaaatattaaaata	CRISPR spacer
--attaacacagaataatgatttaaatattaaaata	Protospacer
  ****  . ..******** *.*************

5. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 8, identity: 0.765

aaatta--gggaaataatgaatcaaatattaaaata	CRISPR spacer
--attaacacagaataatgatttaaatattaaaata	Protospacer
  ****  . ..******** *.*************

6. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NZ_CP026694 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP2, complete sequence) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttattacccaagaaaaggaagacaatcttaaaagc	Protospacer
**.. *   ******* ***** *********** 

7. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to CP053577 (Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
attcagggaaagaaaatgaagaaaattttgaaacc	Protospacer
 * *..*.******************.**.***  

8. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttgagagaaaagaatatgaagaaaaaaagaaagaa	Protospacer
*** ********** **********    ***...

9. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NZ_CP026694 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP2, complete sequence) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttattacccaagaaaaggaagacaatcttaaaagc	Protospacer
**.. *   ******* ***** *********** 

10. spacer 5.25|928563|35|NC_015587|PILER-CR matches to CP053577 (Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
attcagggaaagaaaatgaagaaaattttgaaacc	Protospacer
 * *..*.******************.**.***  

11. spacer 5.25|928563|35|NC_015587|PILER-CR matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 9, identity: 0.743

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttgagagaaaagaatatgaagaaaaaaagaaagaa	Protospacer
*** ********** **********    ***...

12. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 9, identity: 0.735

aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
gaatatgggaaataatgaatcaaatatgagtcat	Protospacer
.***  ********************* *.    

13. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
gaatatgggaaataatgaatcaaatatgagtcat	Protospacer
.***  ********************* *.    

14. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 9, identity: 0.735

aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
gaatatgggaaataatgaatcaaatatgagtcat	Protospacer
.***  ********************* *.    

15. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 9, identity: 0.735

aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
gaatatgggaaataatgaatcaaatatgagtcat	Protospacer
.***  ********************* *.    

16. spacer 7.4|1024231|34|NC_015587|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 9, identity: 0.735

aaattagggaaataatgaatcaaatattaaaata	CRISPR spacer
gaatatgggaaataatgaatcaaatatgagtcat	Protospacer
.***  ********************* *.    

17. spacer 5.5|928366|38|NC_015587|CRISPRCasFinder,CRT matches to NZ_CP045218 (Pantoea dispersa strain BJQ0007 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.737

actttgttgaaaggaacattaacaatgtaaaagaagta	CRISPR spacer
atattggtgaaaggaacattaaaaatgtaattattata	Protospacer
*. *** *************** *******  .  .**

18. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NZ_CP046974 (Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
agcctaaaaaagataatgaggaaaatcttaaagac	Protospacer
   * *.****** *****.************.. 

19. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

20. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

21. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

22. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
gattgagcaaagaaaatgtagaaaatctttataca	Protospacer
   .*** ********** ********** * * .

23. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

24. spacer 5.22|928367|38|NC_015587|PILER-CR matches to NZ_CP045218 (Pantoea dispersa strain BJQ0007 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.737

actttgttgaaaggaacattaacaatgtaaaagaagta	CRISPR spacer
atattggtgaaaggaacattaaaaatgtaattattata	Protospacer
*. *** *************** *******  .  .**

25. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NZ_CP046974 (Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
agcctaaaaaagataatgaggaaaatcttaaagac	Protospacer
   * *.****** *****.************.. 

26. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

27. spacer 5.25|928563|35|NC_015587|PILER-CR matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

28. spacer 5.25|928563|35|NC_015587|PILER-CR matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

29. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
gattgagcaaagaaaatgtagaaaatctttataca	Protospacer
   .*** ********** ********** * * .

30. spacer 5.25|928563|35|NC_015587|PILER-CR matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 10, identity: 0.714

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
ttactagaaaagaaaatgaagaaaagagaagacaa	Protospacer
**.* ********************    *.* ..

31. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NZ_CP007602 (Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
acaaaagaaaagaaaatgaagaaaacattatcgag	Protospacer
 .. .********************. ***  ..*

32. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NC_003042 (Clostridium perfringens str. 13 plasmid pCP13, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

33. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NC_023917 (Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

34. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NC_023918 (Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

35. spacer 5.8|928562|35|NC_015587|CRISPRCasFinder,CRT matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

36. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NZ_CP007602 (Staphylococcus capitis subsp. capitis strain AYP1020 plasmid pAYP1020, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
acaaaagaaaagaaaatgaagaaaacattatcgag	Protospacer
 .. .********************. ***  ..*

37. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NC_003042 (Clostridium perfringens str. 13 plasmid pCP13, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

38. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NC_023917 (Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

39. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NC_023918 (Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

40. spacer 5.25|928563|35|NC_015587|PILER-CR matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

ttgcgagaaaagaaaatgaagaaaatcttaaaagg	CRISPR spacer
aattaagaaaataaaatgaaaaaaatcttagtaat	Protospacer
   ..****** ********.*********. *. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	20134 : 29000	11	Catovirus(28.57%)	NA	NA
DBSCAN-SWA_2	857007 : 864421	8	Tupanvirus(16.67%)	tRNA	NA
DBSCAN-SWA_3	1432307 : 1441225	7	Enterobacteria_phage(42.86%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_015587|20134:29000|DBSCAN-SWA
AATGGGTATACCGATTAAGCTTATTGCTGGTTCGTCAAATATGAAGTTAGCTCAAGAAATATCTGAATATCTCGATATACCATTGTCAAAAACGCTTCTTAGTAAATTTAGCGATGGTGAGATAAGAGTGCAAATAGAAGAATCTATGAGAGGTGGAGATATATTTGTTATTCAATCGTTATCGGCTCCTATAAACGACCACATTATGGAGCTTGTACTACTATTAGATGCTATTAAAAGAGCGTCTGCTTATCGTATAACTGCAGTAATACCTTATTTTGCCTACGCAAGACAAGATAGAAAAGATAAACCACGTGTTCCCATAAGCGCTAGAGTGTTAGCTGATATGATAACCAACGCAGGAGCCCAAAGGGCTGTGATAGTAGATTTACACTCTCCTCAAATTCAAGGATTTTTTAATATACCAGTGGACAATTTGTTGGCATTGCCGGTGTTGTATGATTATATAAAGTATAAAGTAGATCCCTCTAGTTCTGTGGTAGTATCCCCAGACGCTGGTGGTGCTGAAAGGGCAAGGCAGCTTGCCAATAAACTTGGATGCAACATCGCCATCATATACAAAAGAAGACCAGAACCAAATAAAGCGGAAGTGTTTGATGTAATAGGAAATGTAGAGGGTAAAGATGCCATTATAATAGATGATATTATAGATACGGCAGGTACTTTGGTGGCTGCTACAAATATGCTTATAAACAAAGGGGCAAGATCTGTTAGAGCACTAGCTACTCATGGTGTTTTATCTGGACCAGCGTTAGAGCGTATAAACAACTCTATATTAGAAGAGGTAGTATTAACCAACACCATATGCCAGCAGGGTAAAGAATCTAGCAAAATAAACATAGTGAGCATAGCTCCAATAGTGGGAGAAGCTATAAAGCGCATATACGAAAACTCTTCTGTAAGTTCTTTATTCGTATGATATAATATAAAGCTCTTAGGATGGGTGGCCGAGTGGTCGAAGGCGCACCGCTGGAAACGGTGTGAAGGGTGATGAGCCCTTCCGCGGGTTCGAATCCCGCCCCATCCGCCACTTGAAACTTTAAGCTTTATAATGTAGGGCTTCAAATAGAAGTTTTACTTCATTTGGTTTTAAATGTCTCCATTTACCTTTTGGCAGATTACCAAGAGAAATAGGACCTATCGCTGTTCTTATAAGATGTTTTACTGGTTTTTTAAAAGCTAAGAAAAACCTTTTTACAAGATGATTTTTACCTTCGTGGAAAGTTATCTCTATGTTTGCACCATTTTTAAACCTTTTTAAAAGCTTCAAACTATCTGGTTTTACAAACCCATCCTCTAGTTTTACACCCCTTTTCATCTTTTCCAATGTTTCATCATCTATCTCACCTTTTACTGTGGCTATATATACTTTTGGTAGCTTGTATCTTGGATGTATTATTCTGTTTGCCAACTCTCCGTCGTTGGTGAGTATCAAAAGCCCTTCTACGTTGTAATCTAATCTTCCAGCTGGATATACCCTAACACCCACATCTTTTATTAGTTCTCTTATGGTGGGCTTTTCTTCTTTTTCTCCCAAAGATGTAAGGTAGCAACATGGTTTGTTTAACATTATATATACTGGTTTTTGAGCTTTTACTATGCGACCTCTAAACTCTACTATATCTTCATCTGGATTTATAGTGACACCAAGTTCTTTTACTATCTTGTTGTTTACCTTAACGTAGCCTTTTTCTATATACTCATCTGCTTTTCTTCTAGAGCATACTCCAGCCAAAGATAAAAATCTATTTAACCTCATTGTCTTATAAGTTTGAAAAACTCCTCCTTTGTTCTAATATCGCTTAAAAAGCTTCCCCTTAAAGAGGAAGTGACGGTGCAATGTCCTGGTGATCTTACTCCTCTCATAGACATACAAAGATGCTCTGCCTCTATTACGACACCAGCTCCCATTGGTTCTAATTCTTTTTGGACTATATCGGCTATTTCCTCTGTAAGTCTTTCTTGGACTTGTGGTTTTAAAGCCATAGCCCTTACAGTTCTTACAAGTTTAGATAGCCCACATATCTTTTTGTTTGGTATATAGGCTATATGAGCTTTTCCAAAAAATGGTAAAAGATGATGCTCGCACATACTATAAAAAGGTATATCTTTTACGATAATCATTTCAGAATAGTTGCTGTACTCTTCAAAAAGCTTAAAATCAAAGGATCTCTCTTTTTCAAACTCCTCCCACATCCTAGCGACTCTTTCTGGGGTTTCTTTTATGCCTTCTCTTGTGATATCTTCTCCTATACCTTCTAAGAAAAGCTTTATACCTTGTATGATCTTTTCTTTGTCAATCATTTTCAAAACCTCTCACTAAAATTTCTGCTAAATATATTAAATCTTAATATCATTATCAATGGGTTATCTCATGAAATATTCAGTAAATATGTTCTTCTGATGGAAATATATTTTCTTCAACTTCTTTTTTATAGCTTTTTATAGCTTCTAAAAATATTTGATAACCGTTTGTATATCTTTTTACAAACTTTGGTTTCATAAAATCCACAAGACCAACGATATCCTCAAACACAAGCACCTGTCCATCGGTACTGGCTCCGGCACCTATCCCTATTGTTATAACGCTTTCAGAATGAAGTTCTTTTGCCAGAGAATCTGGTATGCTTTCAAGCACCACCATAAAAGCTCCAGCTTCAGCTACACTGTTAAAGTCCTCTTTTATGATGTTTTTTTCCTCTTCGGTTTTACCCATAAATCTAAACTTTCCTATAGTGTTTATCCATTGAGGTGTAAAGCCTATGTGAGCGCATACTGGGATGCCTATCTTTGTAAGTTTCTCGATAAGAGGCGCAAAATAGCTCCCACCTTCAATTTTTACAGCATCAGCTTTTGTTTGTTTTATAACGTTGCCGCAGTTTTTAACAGCTTCATCTATAGAGCTTTGATAGCTCATAAAAGGCATATCCACTATCACAAATGTATTTGGAGCCCCCCTTCTTACCGCTTTTGCGTGATATATCATTTCTTCTAAAGATACTCCAAGGGTGTTTGGTTCTCCTTTAAATACCATGCCAAGAGAATCCCCCACTAAAATGGTATCAATGCCAGCTTCTTCGCAAATTTTAGCTGATATGTAGTTATTTAGAGAGACCATTGTGATTTTTTGTTTATTTTTTTTCTTTTTAAATAAAAGCTCTATATTTAATTTATTGGTCATCTTCTTGATTGTCAAAAGAAAGTTGGTTTAGAGCCTTCTTTCTTAGGTAAGCTTCTATAAAGTTGTCTATTTCGCCATCCATTACAGCCTCTATATTACCGGATTCTTCACCGGTTCTTAAGTCTTTTACCAGTTGGGATGGTTGGAATATGTATGATCTTATTTTATAGCCCCATCCTATATCTGTTTTTGGTCCTTCTAAGCTTTTTTTCTTTTCTTCTATCTTTTGAAGTTCTAACTGATAAAGTCTTGCTTTAAGCATTTCCATAGCTTTTCTTCTATTTTGTATTTGAGAGCGCTCTTGCTGACAGGCTACTACTATACCAGTTGGTATATGAGTTATTCTAACGGCTGTATCCGTTTTGTTTACATACTGACCACCAGCTCCAGAGGCTCTATAAGTATCTATCCTCAGGTCCTCTTCTTTTATTTCTATATTTACATCTTCGTTAACCTCTGGTACCACAAGCACAGAAGCAAAAGATGTATGTCTTCTGGCGTTGGCATCAAAAGGCGATATCCTTACAAGCCTATGAACACCGTTTTCAGATTTTAAATAACCGTAAGCATAAGGTCCTTTTATATAAAGGGTGGCGCTTTTTATACCGGCTACATCGTCTGGATTTATGTCTGTAAGCTGTACTTCATAGCCATGTTTTTCTGCCCACCTTGTGTACATTCTAAGAAGCATACTAGCCCAATCGCAAGCTTCCGTTCCACCTGCCCCAGCCTGTATTGTGAGATAGGCGTTGTTTATATCCATCTCATCAGAAAGGTAAGTTTCAAGCTCAAATTTCTTTAAATCTTTTTCTACAGCTTCTAACTCTTCGCTTATCAGTAGCGTTGTATCTAAGTCTTCTTCTTTCAGTTCGCTTACCATTTCATCTAAATCTTTTATACGGCTTTTAAGAGATGTGTAAGTATTTAATTTGTCTTGAAGAGCTTTTCTTTTTTGACTTATGCTTTTGGCTTTTTCTTGATCGGACCAAAAATCTGGTTCTGACATCATTTGGTCATACTTTTCTATTTCTTTTCTTATCTTTTCTTCGTCTATAGAAGAAGACAATTCTTCAAATCGCTTTTTTATATCGGAAAAGTTGCTTACTATTTCTACCATATTACTTTATATCTACTACTTTGTACCCCCATTCTTCAATGGCGGATTTTATATCGGCTTCTGAGAGTTTTGTCTCGTCGTACTCTACCTCTGAGTATTTTTTGTCTAGCTTTGTATCGAAGCTTTTAACCCCTTCTAAAGCCCCGATTGCTTTGTTTACAGTATTAACGCAGTGCATACATGTCATACCTTCTATGTAAAATAGCTTTCTCATAGTATATATTATAATCTTAAAAGCCAAACAAGTATATAAATATTATCATAAGATATAGCTTTTAGTAAAATATGTTGAAATCTTTTATAAATAACGATATAAAGTACTTGACAATAATAAGCTAATATTTTATAATATTAAGTATGAAGAAAGATTACTATGAAATTTTAGGGGTAAGTAGAAACGCTACTCAAGAGGAGATTAAAAAAGCTTATCGTAGACTGGCTAGGAAGTATCATCCAGATTTTAACAAAGAACCAGGGGCAGAAGAAAAATTTAAGGAGATAAACCAGGCTTATCAGGTACTCTCTGATGAAAATAAAAGAAAAATTTACGATCAATTTGGAGAAGAAGGCTTATCTGCTAGTATGGGACAACAGGGCGGGCAAGAAGCGTGGACGAGAGTAAACGCTGGTTTTGGAAACTTAGAAGATTTGCTAAGAGATGTGTTTGGTGGTGGTTTTGGAGATTTGTTTTCTGAAGATATATTCACTGGCGGTAGAAAGTCAAGAAGCTCTTCAAGACAAAGGCCTATAAATGGAGAAGACATTGTAAAAACCGTAGAAATGACATTAGAAGAAGCCTACACTGGCAAAAAGGTAAATTTAGAGGTAGAAAAAGGTGTACCTTGTGATGCATGTGGAGGCTATGGATACGATAAAAACTCTGAAAAGGTGTGCCCTACTTGTAAAGGTGCTGGGAGCGTTAATCAAAGAGCTATGTTTTTCTCTATATCTACCACCTGTCCTCAATGTGGTGGTAGTGGTTACATAAGGGAAGCTTGTAAAAAGTGCAAAGGACAGTCTTATATCTTCAAAAAAGAAGTTATCCCTGTAAACATTCCACCAGGTGTTGATAATGGTACAAAGCTTGTGGTAGATGGTAAGGGGCATGCGGGACTATTTGGTGGAAGGCCTGGCAACCTCTACGTGATAACCAGAGTATTGCCCCATGAAATATTCAAAAGAAAAGGCGATGATTTGTATATAGATGTAAATATAACTTATCCAGAGGCTGTTATGGGTACTACGATAGATATAAAAGATTTAAAAGGGGACAATATAAGAGTAGAAATACCACCTGGTACAAAAGAAGGTGATGAAATAGTTATTTCTGGTAAAGGTATGCCAAAATTAAAAGGTAGTGGTTATGGTAACCTTGTTGTAATACCTCATATAGATGTACCTAAGTTTAATACGCTTTCAAAGATTATGGGTGATGGCAAAAAAGCTGAAAAAATGTTGAAAGAGCTTGATAAACTTTTACCAAAACCTGAAAGGGTGGTGAGGAACTATGAGCGCTGAAAGAAGAGCCAAAGCGGTGTTTACTATAGGTACTGTAGCTAAAATGTATAAAATTCACCCTCAAACTCTTAGACTTTACGAAAGAGAAGGTCTTTTAAAACCTTCTCGAACCGAAGGCAACACAAGGCTTTATACAGAAGAAGACCTTGAGCAGTTGGAGTTTATCCTTATGCTGGCGAGAGACCTGGGGGTAAACATAGCCGGTATAGATGTTATATTAAACCTGAAAAGGCAGATGGAAGAGATGCAAAAAGGTATTGAGCTTTTAATAGATATAATAAAAAAGATAAGAACTGAGAATGTAAACTCTGAAGACGTTGACAAAGCTATAGTGCTTATGAACAATTTAAACAAAGGCATTATAAAAATTGCTAAAAAATCCTAGAGTGGTTTATCATTTAAACAGACAATGGCTTGCAGTAGCTTAGAGAAATGCTGTTAGCACACTACTTACTCCCGCAAACGTATCTTACACCTTTATCTGTTTTGGCCCAATGAGGTGTGTTGGGAGCAAGTATGACCTTGTCTCCAGGTAAAAGCTTAAAAACTTTATCTTCAACACCTATTTCTACTTCTCCAGAGACCACCCATCTTACTTCTTCGTCTTCATGAGTATGCCAAGGATAGTACGTGCCCTTAGAGTCTTGCCATGTATAAACATCGTAGCCTTGTTGTTTTAATATATCTTTTATCGTTTCTTCGTCTTTTATGTTAGTTTTTTCAAAGATAACTTTACTCATCTTTAACTTTTGACTTATCTTCTAGTATTTTTAACTCTGCCCTTTCTATAGCTAAAGCTTTTGGTGGTATATCTTTTGTTATTACAGAACCACCAGCTATAAAGGCAAAGTCCCCTATGTTTCTTGGAGCTATTATAAGGGAATTACTACCTATGAAAGCTTTTTGTCCTATATAAGATTGATACTTTTGTTTGCCGTCAAAGTTTGCTACCACTGTTCCAGCCCCTATGTTGGCTTTTTTACCTATGCTTACATCTCCAAGATAAGAAAGGTGCTTCGCCATCACGTCTTCTTGAAGTTTTGCATTTTTTAGTTCTACAAAGCTACCTACGTGAGAGCCTTTACCTACCACAGAGTTGTCTCTTATATGGCACATTGGACCTACAATAGCTTCTTCTTCTACGGTTGAGTTTTTTATGTAGCTCATAGGAAGTACAGTGGCTTTTTCTTTTATAGTAGCATTTTCAAGGTAGCTTCCATTCATAACCTTTGCTTTTTTGTGTATAACGGTATTGCCTTTTAAAACAACGTTTGGAAATATTTCAGCATCTAATTCTACTTGTACGTCAGGTTCTATGTAAACAGATTCTGGCGAGTGTATGGTAACACCTGATCTTGCAAGGTTTTCCAATATTCTCATTTTTATAACGCTTTCTGCAAAACTAAGCTCCCATCTGTCGTTTACACCAAAGATTTCTGTAATCTCAGAAGCCATGAAGCTCCTGCACGTATAACCAAGATTTGTCATAATTTCTATTATATCTGTGATATAAAGCTCGTTGGTTTTTTCGCTTGGTTTTAAGTGTTTAACAGCTTCTTTTAGATATGGTACGTAAAACATATAAACACCACCATTTACTTCGTTTATTTGTTTTTGTTCATAGGTGGCTTCTTTTTCTTCTACTATTTTTACTACGTCTCCTTTACCATTTTTTACTATTCTCCCATAACCTGTTGGGTCTGGTAAGAAAGAAGACAATACCAAAGCTCCCACTTTTATCTTTTCATACTCTTCTACCATGTGTAAAAATCTTTGCATACCTTTTATGGTATCTGGTTTTACCAAAGGAGCATCGCCGTTTGTAACCAATATGTAATCGTCCATACCTTCATAAAAAGCTTTTGCCGATAAAAGGGCATCTGCAGTGCCACCTTTTGGATTTGCCTGTTCAAAAAACAATACGTTTTCATGCTTTAAAGCTTCTAATATAGTTTCTTTTTTGTGGGATACAACTAAAGCTATATCTACTATGTTAGATTGTTTTATATAGTTTAGCACATACCAAATGATAGGTTTACCAAGCATTTCATGTAGTACTTTGTGTTTTTCGCTTTTAAATCTAGTGCCTAAGCCAGCTGCAAGTATTATCGCTTTCATAACTATATTTTAACCCACAACTCCCATCTTCGTAGCATAAAAATAAAATAATCTTTCTATGCCTATTGAATATCCTGCATAAGAAAAGCCGTTGTGATAATCTTTAACAAGTTTTTCTTTATCTTTTATAGGTTTGTAATTAGATGCATTTTCTACGATATCTTTTATTTTTTCATAGTTTGTTTCTTCTACCCAACCGTTTGCTATTTCAACCCCATCTATAAAAAGCTCAAAGCGTTTTGATACACCATCTTTACATGTAGACAATACACCTAGTTTACACGGGAAATCTGTTAAAAACTCTATTTGGCTTTTACCAAGTTTAGGTTGCATATGCACCATCATTTTATCTATCAGCTCTTCCCATGTATCGCTATCGTCAAACTCATATCCAAAAGATATGAGGTTGTTTTTAAGTATATCTTCATCTTCAGAAAAAATGACTCCAAGGTATTCTTCGAATGCCTTTTCAAAAGGCGTTAACTTTGGTTTGGTCAAGATATCTTTTATATTTTCTCCGAAAAGCTCAAAAATAAGCTTAGATATCTCGTTTATTGCATTTGCATTCTCAACGTTGTAGCATTCTAACATTGTAAACTCTATGCTGTTTAAATTACCGCATTCTTCGTCTCTAAAGACTTTTGCTATTTGGAATATATTTGATTTGTAGGTTTTCAAAAGGGCTTTCATAGATCTTTCTGGGGATGTATGAAGATACGCTTTTTCTTTTTTACCGCAGTAAGTTATATCTATCTCCACTGGTTTTATATATTTCTCTAAATTTGGCTCATCTTGGATGTATGGTGTAAAAACTTCTGTGTAGCCTAATCTTTTGTAAAAACCTCTTATCTTGTCTATAAACTCTTCATAAAGTTTTGGGGCTTTTAACGGTAAAGAAAAAATATCTATCAT

Protein sequences of DBSCAN-SWA_1

>NC_015587|20134:29000|25959_26355_+|WP_015418679.1|DBSCAN-SWA
MSAERRAKAVFTIGTVAKMYKIHPQTLRLYEREGLLKPSRTEGNTRLYTEEDLEQLEFILMLARDLGVNIAGIDVILNLKRQMEEMQKGIELLIDIIKKIRTENVNSEDVDKAIVLMNNLNKGIIKIAKKS
>NC_015587|20134:29000|28097_29000_-|WP_015418682.1|DBSCAN-SWA
MIDIFSLPLKAPKLYEEFIDKIRGFYKRLGYTEVFTPYIQDEPNLEKYIKPVEIDITYCGKKEKAYLHTSPERSMKALLKTYKSNIFQIAKVFRDEECGNLNSIEFTMLECYNVENANAINEISKLIFELFGENIKDILTKPKLTPFEKAFEEYLGVIFSEDEDILKNNLISFGYEFDDSDTWEELIDKMMVHMQPKLGKSQIEFLTDFPCKLGVLSTCKDGVSKRFELFIDGVEIANGWVEETNYEKIKDIVENASNYKPIKDKEKLVKDYHNGFSYAGYSIGIERLFYFYATKMGVVG
>NC_015587|20134:29000|24453_24666_-|WP_012513070.1|DBSCAN-SWA
MRKLFYIEGMTCMHCVNTVNKAIGALEGVKSFDTKLDKKYSEVEYDETKLSEADIKSAIEEWGYKVVDIK
>NC_015587|20134:29000|22537_23335_-|WP_015471329.1|DBSCAN-SWA
MTNKLNIELLFKKKKNKQKITMVSLNNYISAKICEEAGIDTILVGDSLGMVFKGEPNTLGVSLEEMIYHAKAVRRGAPNTFVIVDMPFMSYQSSIDEAVKNCGNVIKQTKADAVKIEGGSYFAPLIEKLTKIGIPVCAHIGFTPQWINTIGKFRFMGKTEEEKNIIKEDFNSVAEAGAFMVVLESIPDSLAKELHSESVITIGIGAGASTDGQVLVFEDIVGLVDFMKPKFVKRYTNGYQIFLEAIKSYKKEVEENIFPSEEHIY
>NC_015587|20134:29000|26416_26710_-|WP_015418680.1|DBSCAN-SWA
MSKVIFEKTNIKDEETIKDILKQQGYDVYTWQDSKGTYYPWHTHEDEEVRWVVSGEVEIGVEDKVFKLLPGDKVILAPNTPHWAKTDKGVRYVCGSK
>NC_015587|20134:29000|23324_24452_-|WP_015418677.1|DBSCAN-SWA
MVEIVSNFSDIKKRFEELSSSIDEEKIRKEIEKYDQMMSEPDFWSDQEKAKSISQKRKALQDKLNTYTSLKSRIKDLDEMVSELKEEDLDTTLLISEELEAVEKDLKKFELETYLSDEMDINNAYLTIQAGAGGTEACDWASMLLRMYTRWAEKHGYEVQLTDINPDDVAGIKSATLYIKGPYAYGYLKSENGVHRLVRISPFDANARRHTSFASVLVVPEVNEDVNIEIKEEDLRIDTYRASGAGGQYVNKTDTAVRITHIPTGIVVACQQERSQIQNRRKAMEMLKARLYQLELQKIEEKKKSLEGPKTDIGWGYKIRSYIFQPSQLVKDLRTGEESGNIEAVMDGEIDNFIEAYLRKKALNQLSFDNQEDDQ
>NC_015587|20134:29000|26702_28088_-|WP_015418681.1|DBSCAN-SWA
MKAIILAAGLGTRFKSEKHKVLHEMLGKPIIWYVLNYIKQSNIVDIALVVSHKKETILEALKHENVLFFEQANPKGGTADALLSAKAFYEGMDDYILVTNGDAPLVKPDTIKGMQRFLHMVEEYEKIKVGALVLSSFLPDPTGYGRIVKNGKGDVVKIVEEKEATYEQKQINEVNGGVYMFYVPYLKEAVKHLKPSEKTNELYITDIIEIMTNLGYTCRSFMASEITEIFGVNDRWELSFAESVIKMRILENLARSGVTIHSPESVYIEPDVQVELDAEIFPNVVLKGNTVIHKKAKVMNGSYLENATIKEKATVLPMSYIKNSTVEEEAIVGPMCHIRDNSVVGKGSHVGSFVELKNAKLQEDVMAKHLSYLGDVSIGKKANIGAGTVVANFDGKQKYQSYIGQKAFIGSNSLIIAPRNIGDFAFIAGGSVITKDIPPKALAIERAELKILEDKSKVKDE
>NC_015587|20134:29000|21909_22458_-|WP_015418675.1|DBSCAN-SWA
MIDKEKIIQGIKLFLEGIGEDITREGIKETPERVARMWEEFEKERSFDFKLFEEYSNYSEMIIVKDIPFYSMCEHHLLPFFGKAHIAYIPNKKICGLSKLVRTVRAMALKPQVQERLTEEIADIVQKELEPMGAGVVIEAEHLCMSMRGVRSPGHCTVTSSLRGSFLSDIRTKEEFFKLIRQ
>NC_015587|20134:29000|20134_21073_+|WP_015418673.1|DBSCAN-SWA
MGIPIKLIAGSSNMKLAQEISEYLDIPLSKTLLSKFSDGEIRVQIEESMRGGDIFVIQSLSAPINDHIMELVLLLDAIKRASAYRITAVIPYFAYARQDRKDKPRVPISARVLADMITNAGAQRAVIVDLHSPQIQGFFNIPVDNLLALPVLYDYIKYKVDPSSSVVVSPDAGGAERARQLANKLGCNIAIIYKRRPEPNKAEVFDVIGNVEGKDAIIIDDIIDTAGTLVAATNMLINKGARSVRALATHGVLSGPALERINNSILEEVVLTNTICQQGKESSKINIVSIAPIVGEAIKRIYENSSVSSLFV
>NC_015587|20134:29000|24809_25970_+|WP_015418678.1|DBSCAN-SWA
MKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKEPGAEEKFKEINQAYQVLSDENKRKIYDQFGEEGLSASMGQQGGQEAWTRVNAGFGNLEDLLRDVFGGGFGDLFSEDIFTGGRKSRSSSRQRPINGEDIVKTVEMTLEEAYTGKKVNLEVEKGVPCDACGGYGYDKNSEKVCPTCKGAGSVNQRAMFFSISTTCPQCGGSGYIREACKKCKGQSYIFKKEVIPVNIPPGVDNGTKLVVDGKGHAGLFGGRPGNLYVITRVLPHEIFKRKGDDLYIDVNITYPEAVMGTTIDIKDLKGDNIRVEIPPGTKEGDEIVISGKGMPKLKGSGYGNLVVIPHIDVPKFNTLSKIMGDGKKAEKMLKELDKLLPKPERVVRNYER
>NC_015587|20134:29000|21193_21913_-|WP_015418674.1|DBSCAN-SWA
MRLNRFLSLAGVCSRRKADEYIEKGYVKVNNKIVKELGVTINPDEDIVEFRGRIVKAQKPVYIMLNKPCCYLTSLGEKEEKPTIRELIKDVGVRVYPAGRLDYNVEGLLILTNDGELANRIIHPRYKLPKVYIATVKGEIDDETLEKMKRGVKLEDGFVKPDSLKLLKRFKNGANIEITFHEGKNHLVKRFFLAFKKPVKHLIRTAIGPISLGNLPKGKWRHLKPNEVKLLFEALHYKA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015418673.1|20134_21073_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	1.4e-49	39.7
WP_015418674.1|21193_21913_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_015418675.1|21909_22458_-	GTP cyclohydrolase I FolE	A0A088F7Y4	Vibrio_phage	2.9e-36	45.4
WP_015471329.1|22537_23335_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.6e-45	39.5
WP_015418677.1|23324_24452_-	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	1.7e-06	41.0
WP_012513070.1|24453_24666_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_015418678.1|24809_25970_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	6.9e-35	31.1
WP_015418679.1|25959_26355_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015418680.1|26416_26710_-	cupin domain-containing protein	NA	NA	NA	NA
WP_015418681.1|26702_28088_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7P8	Chrysochromulina_ericina_virus	7.4e-28	30.2
WP_015418682.1|28097_29000_-	elongation factor P--(R)-beta-lysine ligase	A0A1V0SAC0	Catovirus	8.6e-09	27.0

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_015587|857007:864421|DBSCAN-SWA
ATCATGATAATGCATCAGCAATAACTTTACCTATAAAAGCTGGATTTTCTATCACAGTCACATTAGCCTCTTTCAAAGCCTTCATTTTAGATTCAGCTGTCCCCTTACCACCGCTTATAATAGCACCAGCGTGCCCCATTCTCTTGCCAGGAGGAGCTGTAATACCAGCTATATAAGCAAAAACTGGCTTTTTAACGTTAGAGGCTATGTATTCTGCTGCCTCTTCTTCGGACGTACCCCCTATCTCACCTATCATGAGTATAGCTTTTGTCTCATCGTCTTCATTAAAAAGCGCTATCACATCCTTATGAGAAAGACCATGCACTGGATCACCGCCTATACCTATGGCACTAGATTGCCCTATACCGAGGTTTGAAAGTTGAAAAGCAGCTTCATAAGTTAATGTCCCGCTTCTTGAGACTATGCCAACGTTGCCTTTTTTAAATATATGCCCTGGCATAATCCCTACTTTCGCCTCTTCCGGGGTAATAGCTCCAGGACAATTTGGACCTATTAGTTTTGTATTGGGATAATTTTTCTTAAGATAGTATTTTACAGGTATCATATCTTTTACAGGAATACCTTCTGTTATACATATTATAAGCTCAATACCAGCATCTGCTGCTTCTACTATAGCATCTGCTGCAAAAGGTGGTGGTACAAATATTAAAGAACAATTAGCCCCGGTGTTTTTCACTGCATTTTCTACCGTGTTAAAAACTGGTATACCTTCTACCTCTATACCCTCTTTGCCTGGGGTTACTCCAGCCACTACTTGTGTGCCATAGTTTTTACATTGTATAGCATGGAAAGAACCTTCTTTACCAGTTATACCTTGAACTACCACTTTCGTATTTTTATTCACCAATATAGACATACAAAACCTCCTTTATTGTGCAAGTTTTATAGCTTTCTGAGCGCCGTCCCACATGTCTACAGCACTCTCAAAGTTTAAACCGGATTCTTTTAAGAGTTTTCTTCCTTCTTCTACGTTTGTGCCCTCTAATCTTACCACCACAGGGATTTTTATGTTTACCATTTTAGCAGCTTCTATCAAACCTTGGGCAAGCCTATCGCACCTCAATATCCCACCAAATATATTTATAAAAACAGCTTTTACATTTTCATCGGATGTAAGTATCCTAAAGGCGTTGGCTATTTGTTCCACAGAAGCACCACCTCCTACATCAAGGAAGTTTGCAGGTGCCCCACCAGCCAATTTAATAATATCCATAGTAGTCATGGCAAGCCCAGCTCCATTTACCATACATCCTATATTACCTTCTAGCTTTATATAATTTAAACCGTACTTTTCGGCTTCCACTTCAAGCGGATCTATTTGAGTGATATCTTCAAGCTCTTCTATATCTTTGTGTCTAAAAGCTGCGTTATCATCTATTTCTACTTTTGCATCCAAAAGCACTATATCTCCATCTTTTGTGAGTACAAGAGGATTTATCTCCACCAAAGAAGCATCCAAATCCATATAAGCTTGATATAGCTTTGAAACTATTTTACCAAACAAAGATGGATTTAAACCAAGTGCAAAAGAGAGTTTTCTAGTCTGATAAGGCATTATGCCAAGAACTGGGTCCACATACTCTTTTATGATGGCATCTGGTTTTTCTTTAGATAACTCCTCTATCTCCATACCACCTTCTTTAGAAGCCATTATAAGTATTTTTGAATTTGATCTATCTAATGTGATGCTAAGATAAAACTCTTTTTCTATAGGAGTAGCTCTTTCTATTAAAAGCCTTGAAACTACTTTTCCATTTGGACATTGAACCGTTTTTAGGATTTTACCAAGTATAGATTCAGAAAACGCTTCCAGTTCCTCATCAGATTTTACTATTTTTACACCGCCAGCTTTTCCTCTGGCGCCACAATGAATCTGGGCTTTTACCACCAATGGATAACCTCCCAGAGCCTGAGCTGCTTCTTTTGCTTCTTTAACGTTAAAAGCAGCATACCCTTCAGGAACAGGTAAGCCATATTTCTTGAGCAATTCCTTGGATTGATGCTCATGTAATTTCATAGAAAACCTCCAGCTAAGATTAGACTAATATTATATCAGAGGTTATATTTTGATTTTGATAAAATTTTGATTTAATTTGATTAAAGAAAATTTTTATAGATTTTATATATTGATTTTGAATAAATTATTTATTTTTTTATATAATTTTAAAAGATCCATATGCCCCGCTAAAAGCAAGGGCATAGGATTTTATATCATTTAAGATAAAACGCGAACGTTTTTTGCTCTTGGACCTTTTGAATCTTGGTCTACCTCAAATTCAACTCTTTGCCCCTGAACCAAAGTTTTGAAACCTTGTCTGTTTGGGTCGATTGCTGAGAAGTGAACGAAAACGTCGCCTTGGTTATCATCCCTTGTGAGGAATCCATAACCTTTTTCTTTGCTGAACCACTTAACTGTGCCTGTGATGCCCATGGAACTAAAACCTCCTAAAATTTGAGACGCGGGAATACTTGAATTGTTATATTCAAATATACCTTTATCTCTTGCATTTAATAATAACATATTTTTATATTTTGTCAATATGATTGTCATCATTGACTCTGCATTCTGACAGCTTTTAAAAGATTATTTTTTATCTGCGCTAATCCTTGAAATGTACCATCTTCCCCTAAAATTTTATACATTCCATCCTGAGATTGATATGTAAGTATTTTGCCTTGTTTTAGGCTTTTAATAAAAGAATGATCTAAAACCAAAGACGGTATAAAATAAAGACCTTCTTCAATAGAATAAACCTTACCTACGCTTTCATTGTCAAATTTACCTATGGCGGTACGCTTTATAATAAGCGTAGTAGCACCCACTTTTAAAGTGTCTCCTATATCGTTTATAAGCGTTCTTATGTAAGTGCCGGTTGAAACAACAGCTTTTATATAAAACTTTGGTATGTCGCATTCTAAAAGCTCAATACTATAGATGTTTACCGTTATAGGTTTCAGCTCTATGCTTTGGACTTGATTTTTTCTTGCCAATTTGTAAGCTTTTTTACCGTTTATCTTTTTGGCGGAGTAGATGGGGGGTATTTGGGTTATTTTGCCTTTGAATTTTTCAATGGTGCTTTTTAGCTCTTCACAGGTTATATTTACATTTTCTATTTTTTGTATAACATTTCCTGAGATATCTTGAGTATCTGTTTTTATACCAAGTATACCTTTTGCCTCGTAAGTTTTTGGAAGTACATTGAAATACTGTGTATACTTAGTGGCTTGACCAAGAGCTACTATCATAATACCTTCTGCTTCTAAATCAAGGGTACCAGTGTGTCCTGCTTTTGTGTTTAGGCTTTTAGAAATATCAAGTACAAACTTCGAAGACGATATACCAACTGGCTTATAGCCTATATAAAAACCATCCATTTAGCTTAAGAAATCTTTTAAATGTCTTTTTAAAGCAAAACTTCTTAGTTTTTTAATAGCCCTTGTTTCTAACTGCCTTACCCTTTCCCTTGAAATACCCAAAGCATCTCCTATCTCTCTTAGCGTTAGAGGTTCATTGCCATTGAGACCATACCTTAGCTCAAGGACTTTTCTTTCTTTCTCCGGAAGTTTACTGATTATATCGTGCAACTCCTTTTCCAATACATCTTTTATAACACCCTCTTCTATCTCGTCTGTGTCAGATATGCTAAGAAGATCTACAAAAAGAGTATCTGGATTGTCTCCCACCGGCGTATCCAAAGAAAGAGGCGTTTTACATATCTGAAGGCATTTTTTTACATCCTCTTCAGTTACAGTATACTTATGCTCTTGGTTCATCGATTGCTCTAACTCCTCTTCCGTAGGTGCAAAACCGGTTTCTTTTTTAAACTCTCTAATAATATTCTTCTTGTTTATATAATCTGCTATTTCTTTATAAGTAGGTTCTCTTTCAAGTTCTTTTAAAAGCTCATTATAAGCAAGACCCACTGCACTTATAAGATGAGAGTGCTTTACAGGTATTCTCACCGCTCCGGTTTGTTGAGACAAAGCTTGCATTATAGCTTGTCTTACCCACCACACAGCATAGGATATAAATTTTACGTTTTTATCTGGATCAAACCTTGTAGCCGCTTCTAAAAGACCCAAGTTTCCAGCCGCTATTAACTCAGACAAGGGTATGCCATATCCCATATACTGCTTTGCTACGCTTACCACAAATCTTAGATTTGCTTCTACTAAAGCTTTTAAGGCTTCCTTATCGCCAGCTTTCGCTCTTTTAGCAAGCTCTTTTTCTTCTTGAGGCGTTAAAAGCTTTACACTAGAGACTCGCTTCATATATTGATTGATAATCTCTTGTTCGCTATCAGAATACATAATAAACCCCTTATATATGTTTCACCTTGTCTGTATGCTTACATAAAACCTTTGCCCATCCCTTGCCACCAAAAACAGCACATATCCAGATTTTACATACTGAGATACAAGCGATTTAAAATCATTTACAGAGTTCACAGGATGGTTGTTTACCATTAGTATCACGTCTCCAGGTTGAAGAGAACCAGCTGCTGGACTATTTGGGGCTACGCTTACCACATAAACACCACCGCCGTAAGTTTGCATCTGTTGTGGAGTTAGGTTTGCTACAGATATACCAATATCTGTCGTAGTTTGAGTTTCACTAACAGACATTGGGTTTGTAGGCATTTTTCCTATAGTTACTTTTAAGTCCATGGGCTTTCCATTTCTTACTATGTGAAATGTAAGAGTAGTACCAGGTTTTGTCTCCATCACTTTAAATTGAAGCTGTTGCACAGTGTTTATATTTTCGTTGTCTATACCCACTATAACATCCCCTACTTTTATACCGGCTTTATCTGCAGGGCCGTTTGGCATAACCTGAACTACCACAGCTCCGTTTTGAACTTTTAAAGCTTTTGCTAAACTAGGTGTTACTTGTTGTATCATTACACCTATCCATCCCCTTGTAACAGAACCATGTTTTATAATTTGAGAAGATACCCATTTTGCTAAATTTATAGGGATGGCAAAGCCAAGACCTTGACCACCTTCTACCATAGCAGAGTTTATACCTATTACCTGGCCTTGTATATTCACAAGAGGACCACCGCTGTTGCCTGGGTTTATAGCAGCGTCCGTTTGTATGTAATTTTCATATTGAGTTAAACCTATGCTCCTATGTAAAGCAGATATAACCCCCATCGTCACAGTCCTATCTAGACCATAAGGATTACCTATGGCTAGTACGATTTGGCCCACTTGGAGTGTATCTGAATTACCAAGCGTTGCTACTCTAGAGCTTGGATCACTTACTCCTTTTGCGCTTACTTTCAATACAGCTAAATCTGTTTTTGGATCAGCTCCCACTATTGTAGCTCTATGTTGCTCGTTGTTGCCGAAACTTACCACTACGCTTTTGCTATGAGCTATAACATGGTTGTTTGTAAGTATATAAAATGTATCGTTTTGCTTGTTGTATTCAAATATAACACCGGACCCAAGAGCTTTTGTTTCTTGTGGTATCGAAGGTGTTGGAAGGTCAAAACCAGGTATTTGCGGGAAAAGAGGTACGTTTATCTCTTGGGTAGAGAATATCGTTACCACAGAAGGAGAGACTCTTTTTACAATCTGCACAAGTTCATCTTGCATCTGTGCCAATACTGGTACATTTAAGTTTAACTTATAATTAGAAGATGATGTTTGGCCTGTAGAATGCTCTTCCACTCTGCTTTTTTTTACACAAGAGCTTGCAAAAAACAAAAGGGCAAACACAGATAATATTGCAAAAATCTTTTTCATGTCTTCACACCTCTATTAAAAATGATAACACAACAAAAGAAGGATTTTCTACTTTTAATAATGTATTTTTTATCTGTGATTTACTAATGAAATAATTGCTGTATTTTTTCTTTGGCTTACCGGTTTTGTTAATAAACTTAAGTAGCTCAAGCTTTGTAAAATCAAGATAGTATACTCTTTTTTCAAATACTTTTATATTTTTTGATTTTAAAAGCTCAAAAACTCTATTCTCATCTGGAAATTCGTATATCCAATTTTCTAAACTCCCCCTTACCGGCAAAGAACAAGCTACATATTTTTTTGATACCCTAATCATCTCTTTTATAGATAGCTCTGTGTTGCACAAATGCAAAGCAAAATTGCTAATTACCATATCAAAACTCTTATCTTTAAAAGGTAGTTCTTCAGCGCTTCCTACCAAAAAGCTTTTATGATAAATTTTTAGGCTTTTATCAATATCAAGAGCTACGCATTTATTGAGGTGTTTAGCCAAAAATCCAGTACCAGCCCCTACATCGAGGGCATTTTCGTAGTCTAAATGTTTTATAATTTCTAAAAGGTCATTTGCCGCTTGTTTTTGTACAACGGCATATTTTTCGTATAAGGTTTTATTCATTTATAGCTTTTAAAATAATATCAGACAACTCTTCATCTGTCATAAAAGAAATTTTTAGGTTTGTATTGCCAAAAAATGTTTTTATCTTTTGTTTTATCTCATCAAAGTAAGAAAATTTAAGGTAGCTTTCTAAATCCTTGATAGCACTTGGTGGTGTGGCAAAAAAATCTCCATTTATAATTATATATTCTAAAAGCCTTTTAGTTTTATCTATTTTAAAACTTATTTTAAAAGTCCCTGCTCTGGTGCGTATGGTTTTTGTGCTTATAAGCTTATCTGCAATCTCATTTTCAAATACCCATTCTTTTGAGTTTAATTTGTTAGAAATCTCATTCAAAAGTTTAATCTCTTCTTGTGTTAAATCTTCTTGTTCTAAACCAAACTCTTCAAACTCTTTTTCTATGGCTTTTGCAATATCTTCAAAAGATGGAGCATAACCAAGTTCTTGTTTTAAAGAAGTTACTCTTTCTTTGGCAGAGGATATATTTTTGTCTTGAAGCTTTTCGTAAGGTATTTTTAGCAAAGAGGCCATTTTGTCTGGATCAAAATCTATAAGTATCGTACCTTGATACAAAAAAGCCCCATCTTGTAAAACCCCGCCAGTACCAGATATTTTTTTAGAGTTTATCTCGATGTCGTTTCTTGGTCTATACTTGGCGTTTAGACCAAAACTTGACAAAGCCTTTGCCACTTTTTCACACATGAATTGAGAAAGCTCCTCGTAGTTTTTTATATTAAAATCCTTTAAAGAGGCCACTACTTCCCATCCTATTTGAGCTTTGTTAAAGTATATAGCTCCTCCTCCTGTTTTTCTTCTTCCTATATCTATATTTAAAAATTTACAAAGCTCTAAATTTACCTCATCGTAGGGATTTTGATGATAACCTATTAGTACACATTCTGGATCAAAACTCAAAAATCTAAGCGTATTTGGTATTTTGTTTTGGGCTTTTAAAGAAAGTAAAACCCCGTCAAGGGCCATGTGGTAATACCAAGGTTTATTAAAAGTATACAAAACCCTCAT

Protein sequences of DBSCAN-SWA_2

>NC_015587|857007:864421|859577_860402_-|WP_015419520.1|tRNA|DBSCAN-SWA
MDGFYIGYKPVGISSSKFVLDISKSLNTKAGHTGTLDLEAEGIMIVALGQATKYTQYFNVLPKTYEAKGILGIKTDTQDISGNVIQKIENVNITCEELKSTIEKFKGKITQIPPIYSAKKINGKKAYKLARKNQVQSIELKPITVNIYSIELLECDIPKFYIKAVVSTGTYIRTLINDIGDTLKVGATTLIIKRTAIGKFDNESVGKVYSIEEGLYFIPSLVLDHSFIKSLKQGKILTYQSQDGMYKILGEDGTFQGLAQIKNNLLKAVRMQSQ
>NC_015587|857007:864421|860402_861338_-|WP_015419521.1|DBSCAN-SWA
MYSDSEQEIINQYMKRVSSVKLLTPQEEKELAKRAKAGDKEALKALVEANLRFVVSVAKQYMGYGIPLSELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVKHSHLISAVGLAYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELEQSMNQEHKYTVTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKELHDIISKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLRSFALKRHLKDFLS
>NC_015587|857007:864421|857007_857883_-|WP_015419517.1|DBSCAN-SWA
MSILVNKNTKVVVQGITGKEGSFHAIQCKNYGTQVVAGVTPGKEGIEVEGIPVFNTVENAVKNTGANCSLIFVPPPFAADAIVEAADAGIELIICITEGIPVKDMIPVKYYLKKNYPNTKLIGPNCPGAITPEEAKVGIMPGHIFKKGNVGIVSRSGTLTYEAAFQLSNLGIGQSSAIGIGGDPVHGLSHKDVIALFNEDDETKAILMIGEIGGTSEEEAAEYIASNVKKPVFAYIAGITAPPGKRMGHAGAIISGGKGTAESKMKALKEANVTVIENPAFIGKVIADALS
>NC_015587|857007:864421|859242_859458_-|WP_012513969.1|DBSCAN-SWA
MGITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQDSKGPRAKNVRVLS
>NC_015587|857007:864421|862785_863397_-|WP_015419523.1|DBSCAN-SWA
MNKTLYEKYAVVQKQAANDLLEIIKHLDYENALDVGAGTGFLAKHLNKCVALDIDKSLKIYHKSFLVGSAEELPFKDKSFDMVISNFALHLCNTELSIKEMIRVSKKYVACSLPVRGSLENWIYEFPDENRVFELLKSKNIKVFEKRVYYLDFTKLELLKFINKTGKPKKKYSNYFISKSQIKNTLLKVENPSFVVLSFLIEV
>NC_015587|857007:864421|863389_864421_-|WP_015419524.1|DBSCAN-SWA
MRVLYTFNKPWYYHMALDGVLLSLKAQNKIPNTLRFLSFDPECVLIGYHQNPYDEVNLELCKFLNIDIGRRKTGGGAIYFNKAQIGWEVVASLKDFNIKNYEELSQFMCEKVAKALSSFGLNAKYRPRNDIEINSKKISGTGGVLQDGAFLYQGTILIDFDPDKMASLLKIPYEKLQDKNISSAKERVTSLKQELGYAPSFEDIAKAIEKEFEEFGLEQEDLTQEEIKLLNEISNKLNSKEWVFENEIADKLISTKTIRTRAGTFKISFKIDKTKRLLEYIIINGDFFATPPSAIKDLESYLKFSYFDEIKQKIKTFFGNTNLKISFMTDEELSDIILKAINE
>NC_015587|857007:864421|857895_859044_-|WP_015419518.1|DBSCAN-SWA
MKLHEHQSKELLKKYGLPVPEGYAAFNVKEAKEAAQALGGYPLVVKAQIHCGARGKAGGVKIVKSDEELEAFSESILGKILKTVQCPNGKVVSRLLIERATPIEKEFYLSITLDRSNSKILIMASKEGGMEIEELSKEKPDAIIKEYVDPVLGIMPYQTRKLSFALGLNPSLFGKIVSKLYQAYMDLDASLVEINPLVLTKDGDIVLLDAKVEIDDNAAFRHKDIEELEDITQIDPLEVEAEKYGLNYIKLEGNIGCMVNGAGLAMTTMDIIKLAGGAPANFLDVGGGASVEQIANAFRILTSDENVKAVFINIFGGILRCDRLAQGLIEAAKMVNIKIPVVVRLEGTNVEEGRKLLKESGLNFESAVDMWDGAQKAIKLAQ
>NC_015587|857007:864421|861359_862781_-|WP_015419522.1|DBSCAN-SWA
MKKIFAILSVFALLFFASSCVKKSRVEEHSTGQTSSSNYKLNLNVPVLAQMQDELVQIVKRVSPSVVTIFSTQEINVPLFPQIPGFDLPTPSIPQETKALGSGVIFEYNKQNDTFYILTNNHVIAHSKSVVVSFGNNEQHRATIVGADPKTDLAVLKVSAKGVSDPSSRVATLGNSDTLQVGQIVLAIGNPYGLDRTVTMGVISALHRSIGLTQYENYIQTDAAINPGNSGGPLVNIQGQVIGINSAMVEGGQGLGFAIPINLAKWVSSQIIKHGSVTRGWIGVMIQQVTPSLAKALKVQNGAVVVQVMPNGPADKAGIKVGDVIVGIDNENINTVQQLQFKVMETKPGTTLTFHIVRNGKPMDLKVTIGKMPTNPMSVSETQTTTDIGISVANLTPQQMQTYGGGVYVVSVAPNSPAAGSLQPGDVILMVNNHPVNSVNDFKSLVSQYVKSGYVLFLVARDGQRFYVSIQTR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015419517.1|857007_857883_-	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	8.3e-17	31.5
WP_015419518.1|857895_859044_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_012513969.1|859242_859458_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.0e-13	53.8
WP_015419520.1|859577_860402_-|tRNA	tRNA pseudouridine(55) synthase TruB	A0A1V0SE53	Indivirus	4.3e-07	26.1
WP_015419521.1|860402_861338_-	RNA polymerase sigma factor RpoD/SigA	G8CLC7	Synechococcus_phage	9.5e-19	25.9
WP_015419522.1|861359_862781_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	5.9e-20	28.7
WP_015419523.1|862785_863397_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015419524.1|863389_864421_-	lipoate--protein ligase family protein	A0A2H4UVX5	Bodo_saltans_virus	1.3e-08	27.0

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NC_015587|1432307:1441225|DBSCAN-SWA
GTTATTTGCTTAAAATGCTTTTCAATACTTCTAAAGCACTGTTAAACGTTTCTATCTTTTGAACCCCTCCTTGGGCTAAATCTTCTCTACCGCCGCCAGACCCTTCCATTGGTTTTGCTACATCTTTTATAATAGCTTTCATATCGTAGTTTAAATCTTTTGATCTAGCTATGAGTATACTCTTTTTTGGGCTTTTGGAAACTAAAAACACCACCGTGTTTGGATGGTGTCTATAGGAATCTGCTATCTCTCTAAGATTGTCCAAAGAAGCTTCTTCCAATATACCCCAGTATAGTTTTATACCGTTTATTTGTTCTAGGTTTACAGAGGATTTAGCTTCTAAGCGTACCAATTTAGATTTCAACGTTTGGATGTGGTTATCTTTTTCTTTCAGTTCTTCTTTTAAAGCTGTTAGCCTTTCTAAAAGGTTTTGCTTGTTGGCACCTATTTCTTGGTATATGGCTTTTAAGAGATTGCTATCTTCATAGGCTTCTCTTACAGCTTTTCTACCAGCCTTTGCAATTATGCGTCTTATACCTGCTCCTACGGATGATTCTGATATTATTTTAAAATAACCTATATCCCCGGTTCTTTTTACGTGGGTTCCACCGCAAAGCTCTTTAGAGAAATCTCCAGCGCTTATTACCCTTACTACATCACCGTATTTTTCTTCAAATATTGCTATAGCTCCAGTTTTTATAGCCTCTTGGTATGGAAGCTCTTTTACAAATACTTCTTCATTTTTCATAATCTCTTCGTTTATCATCGCTTCCAAAGCTTCTAACTCTTCTGGTTTTAGGCTTCTATAAAATGTAAAATCAAACCTTAAAAACTCATCTCCCACGTAAGAACCAGCCTGTCTTACAGATTCACCAAACATATTTCTCAAAGCTGCATGCAAAAGATGTGTAGAGGTGTGATGTCTTTTTATATCCTCTCTTCTTTCTTTATCTATTTTTGCAAGTACGCCTGCGCCTACTCTTAGCCTTCCCTTTATTAGTTTTCCTATATGGGCTATTACTCCATCCGTTGGGGTTTTGGTATCGTTTACTATAAAAAGTGCTTCGCTGTTTTCCAGTATACCGCTGTCTCCTATTTGACCGCCTTTTTCTGGATAAAAAGGTGTTTTATCAAGGATGATGATACCATCTTCTTGCTCTTTTAGCTCTTCTGTTATTTTACCATCTTTTATTATGAAAAGGGCTTTTGCTTGTTCTTCGGTGTGTGTGTATCCTGTGAAGATTGATCTTGCCTTGTCTTTTATGCTAAGGTATACCTCATCCACCTTTTCTTCACTTTTGAAGTGTTTTCTCGATTCTTCTTTTTGTTTTTCTAAAAGCTCATAAAAACCTTTCATATCAAGGGTCATACCTTTTTCATGGGCCATCTCTTGAAGTATATCTAAAGGAAATCCGTAGGTATCGTAAGCTTTAAAGATAAAATCCCCACTTATAACGTTTGACTTGTTCTCAGCTATATATCTATCAAAAAGCTCCAAAGAGTTTTGCAATGTTTCTAAAAATCTCGATTCTTCAGCTTTTATTATATTTTTAACAAATTCTTTGCTCATTTCAAGCTCTGGATATGCGTTTTTTAACGTATCTACCACCACATCTACGCTTTTGTATAAAAACTCTTCTTTTATACCTATCTTATAACCAAATCTTACGGCTCTTCTTAAGACTTTTCTTATTACATAGCCTCTTCCTTCGTTGGAAGGTATAATACCCTCAGATATGGCTACGGTGCAAGCTCTTGAATGATCGGCTATAACCCTCATGGCAATATCAGTTTCTTCATCGGTTTTGTAGCGTTTAGAAGAAAGATCTTCTACAAAATGTATAATAGGCATTATAATATCTATCTCAAAGTTTGAGTCTTTGCCCTGCATCACAGAGGCTATTCTTTCGAGCCCCATACCAGTGTCTATAGAGGGTTTGGCTAAGGGTTCCATATGTCCGGATTCATCTTTGTTAAACTGCATAAAAACGAGGTTCCAGATTTCTAAGTATCTTTCATCTTGAGAATATTTTTCTCCCCTATCTATGTAGATTTCAGAAGAATATCCGCAAGGACCAGTCTCTCCCATTTGCCAAAAGTTATCTTCATCCCCCATACGCCATATCTTATCCTCTGGCACTTTTACCATATCTTTCCATATGTCGTAAGCTTCTTGATCGTTTTGATGGACGCTTACATATATCTTATCTTTTGGTAGTCTCAAAACCTCTGTAACAAACTCCCAAGCGTAAAGTATGGCCTCTTTCTTAAAGTAATCTCCGAAGGAAAAGTTTCCAAGCATTTCAAAAAACGTATGGTGTCTTGTGGTTCTTCCTACGCTTTCAAGGTCGTTGTGCTTGCCTGATACTCTGAAACACTTTTGACAAGAGGTAGCTCTTTTGTAAGGTAAACTTTCAAGCCCTAAGAATACATTTTTAAAAGGTACCATACCAGCATTGACAAATAGAAGCGTAGGATCGCTTTTAGGCACAATAGAAGCACTTTTCACAACGGTATGCCCTTTATTTTCAAAAAAAGATAAAAACTTTTCCCTTATTTCGTCTGTTTTCATACATCTATTTTACCAATGTTTTAATCTCTGGTCAATAAAACCTTTTTAATAAGTCATTCCACTCTTCAAAGTTTTCATTTAAATCTTTTTGGATTTTACTTGAATCTAGGGCTGAAAAATCTGGCCTTCTCGCTGGTAAGTTAAATACTTCTTTGCTTACCGGTATTATGATTTTCTTTATGCCGTAAACCTTTAAAATTAACTTTGCCCATTCGTAACGAGAAGCGTAGCCGTTTGGGACAAGATGATATAGACCGCTTAAGTTTTTGTCTATAGCTTTTAGAGTTTTTTCTACCAAAAAGTCTGCAGGCGTTGGTACAGAAAACTCATCTATCGCTATTTTTAAAATATCGTTATTTTTAGCCCAGTTTAAAAGCTTATAAACAAAGTTTTGTGTACCATCCCCATATACCCAGCTTGTCCTAAATATCAAACATTTTTCCAACCCCTCTTCTAAAGTCCATATTTCACCTGAGAGTTTACTTTTACCGTATTCGTTGATGGGGTTTGGCGTATCTTCTTCTTTGTATAGTCCTTCTTTTGTACCATCAAACACGTAATCTGTTGAGTATGTTATAAAGTAAGCGTTGTATTGTTTGGAAAGGTAAGCTAAGTTTTTTACTCCATAGGCGTTTGTTTTGTAAGCACTTGGAAAATCTGTCTCGGCTTTATCTACAAGGTTATAAGCACTACAGTTTAATACTATATCTGGTCTATAAGAATCAAAGATCTCTTTTAATCTGTCAAAATCTGATATATCGCAATCTTCTTTATCAAGCCCCAAAATATCTTCATTTTGAAGTGCATTTAAAAACGCTTTTCCCAGCTGTCCATTTTTACCAAGTATAAGGTATTTCATACGCTATATACCTTATCCCAATACTCTTTTAGGTATTTGAGTTTTTTCTCTACCCATGCCATATTTTCTATATACCATTTTACAGTTTTTTCTATACCTTCTTCAAATGTAGTTTTTGCTTCCCAGCCAAGCTCATTTTTTATCTTTGTAGTATCTAAAGAATATCTAAAATCATGTCCTGGTCTATCCTTTACAAACTCTATAAGATCTTCATTTTTATGTAAAAGTTTTAATATAGTTTTTACCACATCTATGTTTCTTCGTTCTTGATTGCTACCTACGTTGTAAATCTCACCAATTTTGCCTTTTTCCATTATCTCAAATATAGCATCAGCACAATCTGAGACATAAAGCCACTCTCTTACATTCTGCCCAGTGCCATATACAGGTATCTTTTCGTTGTTTAGGGCCTTTAAGATGACAACAGGTATAAGCTTTTCTGGATATTGCCAAGGACCGTAGTTGTTGGAGGGTCTAACGGTTATAACTGGAAGCTTGTAGGTTTTATAGTAAGCTCTTCCAAGCATATCAGCAGCTGCTTTTGATGAAGAGTAAGGGGAGTTTGGAACAAGGAGTGAATCTTCTTTGAACGTTCCCTCTTGCCCAAGTTCTCCATAAACCTCATCTGTGGCTATGTTGATAAACTTATCAACACCTATATCTTTTGCTACATCAAGAAGCACTTGTGTGCCTTCTACATTTGTCTTTATAAAAGGGCTTGCATCCAATATACTTCTATCCACATGGGATTCTGCTGCAAAATGAACTACAACCTTTGGCTTTTCAGTTTTAAAAATATGCTCTATAAACTCTTTGTTGGTAATATCTGCTTTGTAGAATGTTATATTCTCTTCTACTTCTTTTAGTCTTTCCAAATCCCCAGCATAGGTTAGCTTGTCCACCACAACAATATCATATCCTCTTTTTACGCCTTCTCTTACAAACTCACTGCCTATAAAACCAGCTCCACCTGTTACAAGTAATTTCAAAATTTATCCTCCGTATAAAAAGTTGTTGTCTGCTTGTTCTAGTGTTGGTAGATTTTTATCTTTATCAGATAAAATAACCTCTTTTATATGTTCTAAAGGCCATTTTATGTTTATGGTTTTATCGTTCCATATTATACCTTTGTCGTGTTCTTTTGAATACTCGGCCCCAGATACTTTGTATATTACTTCAGCTTCTTCTGAAAGGGTCAAAAATCCATGGGCAAAGCCCTTTGGTATAAAAAGCATCAGTTTGTTTTCTTCTGAGAGCTCATATCCTACCCATTTGCCGTAAGTGGGACTATTTTTTCTTATATCTACTGCCACATCAAATATTTTACCCTTTATACATCTTACAAGCTTTCCTTGAGCTTCTGGTTCTTTTTGATAATGAAGGCCCCTTAATACTCCTTTTACAGATTTTGAATGATTATCTTGGATAAAGACATCTGTTATACCGTTTTCCTCAAACTCAGATTTTTTATAGCTTTCTAAGAAAAACCCTCTTTCGTCTTCAAAGACCTTTGGCTTTATCAGTATCACCTCTTTTATATCTGTTTTTATAAACTCAAAAGGCATGATCTTGGACTATCTCCATTAAGTATTTTCCGTAATCTGTTTTTCTTAAATTGTGTGCTAATTCTAAAAGTTTCTCTTTTGTGATCCATCCGTTGTTGTAAGCTATCTCTTCTATACATCCTACCATAAGACCAGTACGCTTTTCTATTGTTGATATAAATTCAGAGGCTTCCATAAAACTATCGTGGGTTCCAGCATCAAACCAAGCAAAACCCCTTCCCAGTATATAGGCGTATAGCTTATTAGCTTTCAAATAAACTTCGTTTACAGATGTAATCTCAAGCTCTCCTCTATGAGAAGGCTTTATATCTTTTGCTATATAAACTGCATCTTTATCGTATACATACATACCAACCACTGCATAATTGGATTTTGGATGCTTTGGTTTTTCCTCTAAAGAGATCACCTTACCATCTTCTGATATTTCTGCTATACCAAAGCGCTCTGGGTCTTTTACGTGATAGCAAAATATAGATGCCCCGTTTTCTTTTAAAACCCTTTCTTTTGCCAAACTTACAATCTTGGGCAAATCATGTCCAAAGAATATGTTATCTCCCAAAAGATAAAGCACATAATCATCTTTTATAAAATCTTTTGCAAGAATAAGCCCTTCTGCTAAGCCCCTTGGTTTTTCTTGAATAATATAAGTTATATTTATACCAATATGAGACCCATCTTTTAACAAGAGTTTAAAACTCTCCAAATCTTGTGGGTTTACCACAATGGCTATATCCCTTATACCAAGAAGCATCACCAACGACAGCGGATAATATATCATAGGTTTGTTGTATATAGGCAAAAGATGCTTGTTTAACACTTCTGTAGTGGGGTATAGTCTTGTACCAGAACCCCCTGCCAGTATAACAGCTTTCATATTGATTTATTTTATTATATAATATACTTAGTTTTTATGCTTTTAAAAGTAGAAAATTTAAACGTATTTTATAAAAATAAACATATTTTAAAAGATGTTAGTTTTGATATAGAAGAAAATGAGATATTTTCTATAGTGGGAGAATCTGGTTCTGGTAAATCCACCATTGCAAAAGCTATAATGGGACTTATTGATTATAACGGGCTTATAGAGTATAAGGGTAAGGATATATTTATGATATTTCAAGACCCAGGCAATTATTTGGATCCTCTTTTTAACATATATTCACAGATAAAGATGGTAAAAGAGGCTGTAAAAGAAAGCTCTGGTATGGATATAGATAAGGCTATAAACCTTGTGGGGCTTAATGTAGATGAGCTAAAGAAAAAATATCCCCATCAGCTTTCAGGGGGTCAAAAGCAGAGGGTAATGATAGCAATGTCTTTGGCAAGGGGCTCTTCCTTGGTGATAGCCGATGAGCCCACAACTTCTTTAGATGTTTTGATACAAAAAGACGTTTTGTGCGCTTTTAAGAACATGAAAGCTTATTTTAGTTCAATCATTATAACCCACGATATAGATGTGGTTTATTATATAGCGGATAGGGTGATGGTGTTAAAAGATGGTATAGTGCAAGAGATCTCTAAAAAAGATGATTTTTTTAAAAGCCCAAAAAGCGAATATGGTAAAAAATTGCTAGAGAGTTTTTATTGATTTTAACATTTAAATATCTTGCTTGATTTATCATTGATTTGTTGATAGATTGGTAAATATGAGAAAAGTGTTCAAAATAAGTGGGATGACCTGTGTAAACTGCCAAAGGACTATACAGATAGGTCTTAAAAAAACAAAAGGTGTAGAAGATGTTGATGTATCTTTGGTTTTAGAAAGGGCTATAGTGAGCTTTGATGAAAATATTTTATCAAAAGAAGATATCGTTAAAAAAATAAAAGAGCTTGGATACGAGGCCCAAGTAGTAGAAGAGTCTGGTGTTTTAAACCTATACCTTGATAAAGTAGATTGCTCCACTGACTCTTGTGCTTTACTTACAAAAGAGGATTTAGAATCCTTAAATGGTGTAAAAAAGGCAGTTTTAGACAATATAAAACAAACCCTTTATATAGAATACGATAAAGATATTATTTCCTCTGAAGATATAATGGCTTTCATAAGATCAAAAGGGTATGAAGCCTCTATTTTAGAACTTGACAGATCAAAAGAGATAGCTCTAAAAATAGCTTTTGGTATAGCATCGGGTATTCTTATAATGGCTCTTAACTACAGCTCTATAGCCTACAAAGATTATATAGAGATGGTTTTAGCAATAGCTGTTCAGTTTTACACTGCCAAAGATTTTTACAAAGGGGCTATCGCTTCTTTAAAAGCCAAAACTGGTAATATGGATCTTTTGGTGGCTTTAGGAAGCTTTGTATCTATAGTGTATAGTTCTTTTGTGGTATTTGGGCTTTTAAAAGGAAACACATTTTTTGAAACACCCACTTTTTTGGTATCTTTTGTCTTAATAGGAAAGCTCATAGAGTATAGACTAAAGAAAAAAGCAAGCGCCTATCTTAAAAATCTTACATCTTTAAACCTAAGAAGTGCAAGGGTTTTGAAAGGTACTGAGGAGCTGATTGTGGATTCTTACTCTTTAAAAGAGGGGGATATTGTTTTATTTAAAGCTGGAGACAGGGTATCTTTGGATATTGTGGTAAAAGAAGGAAGTGCTTATATAGATACATCTTTTATAAATGGGGAGTTTGAGCCTGTTTTTGTAAAAGAAGGAGATAACGTAATATCTGGTTCTTTGGTAAAAAGCGGTTATATAAAAGGAGTTGTGGTAAATATAGCTGAAAAATCTTTTATAAATGAGCTTGTAAGAGCTTCAAATTTAAGCCTTGAGAAAAAACCAAACATACAAAGAATATCCGATAAGGTCTCTTCTTACTTTGTACAGGCTATTATCTTAATATCTTCTTTTGTGTTTGTAATATGGAAAATAATAGGTGTACCCACAGAAGAGGCTTTAAACTACTCTGTATCTACCCTTGTGATATCGTGTCCTTGCGCTATGGGTATAGCGGTGCCTATATCTGTTATGGTGGCAGTTTCTATGGCTTTTAAGAATGGTATTTTGATAAAAAACGCCGCTTCTTTAGAAACCCTTTACAAAGCCGATACTTTTGTGCTAGATAAAACTGGTACTTTAACAGAAGGCACCTTTAAAGTTGTAAAAGAGGATATAAAAGAGGATAAGGAAAAAGTATGCTCTTTGATAAAACATGCTGAAAGGTTTTCAAACCATCCGATAGGAAAAGCCCTTTATGAACACTGTAAAGATTACAATATGGACATAAATTTAACGTGTGAAGAGATAAAAGGTTTTGGTATAAAGTGTGAAGATATTTATATAACAGATGTTTCTTTTTGGGATAAAGATATAAACAAAAAAGCTATAGGTATAGGCACAAAAGAAAGTCTCATGGGCATTTTTTATCTTGAAGATGCTATAAGCCCATACGCTAAAGATTTTATTAAAAGCTTAAAACAAAGAAAAAAGCAAATCATACTTTGTTCTGGAGATACCGAACAAAATGTCAAATATATAGCAGATACTCTTGGTATAGAGCACTACTTTGCCTCTATGAGCCCTACCGATAAATCAAATCTTATAAAACGATTAAAAGATGAAAATCATATAGTCTGTATGGTGGGAGATGGTATAAACGATGCAAAGGCTATGGCGCTTTCTGATGTTGGTATAGCTGTATCAAAAGCCTTAGATGCTGCTAAAGTAAGTACAGATATTGTAGTATCAAGTGGTGGTCTTGAAAAAATAATATATCTTTTAGACCTTACGGATAAATTTATGAAAAACGTAAAGCAAAACCTCTTTTGGGCTTTTGGTTACAATGCTGTTATGATACCCTCTGCCGCTGGTATTTTTTCTAAATACGGCATTTACATAGAACCTCAGTTTGCTGGGCTTTTGATGGGGCTTTCGTCTGTGAGCGTAGTGTTAAACGCTATGAGGCTTTCAAAAGCTTAA

Protein sequences of DBSCAN-SWA_3

>NC_015587|1432307:1441225|1438212_1438890_+|WP_015420082.1|DBSCAN-SWA
MLLKVENLNVFYKNKHILKDVSFDIEENEIFSIVGESGSGKSTIAKAIMGLIDYNGLIEYKGKDIFMIFQDPGNYLDPLFNIYSQIKMVKEAVKESSGMDIDKAINLVGLNVDELKKKYPHQLSGGQKQRVMIAMSLARGSSLVIADEPTTSLDVLIQKDVLCAFKNMKAYFSSIIITHDIDVVYYIADRVMVLKDGIVQEISKKDDFFKSPKSEYGKKLLESFY
>NC_015587|1432307:1441225|1435733_1436726_-|WP_015420079.1|DBSCAN-SWA
MKLLVTGGAGFIGSEFVREGVKRGYDIVVVDKLTYAGDLERLKEVEENITFYKADITNKEFIEHIFKTEKPKVVVHFAAESHVDRSILDASPFIKTNVEGTQVLLDVAKDIGVDKFINIATDEVYGELGQEGTFKEDSLLVPNSPYSSSKAAADMLGRAYYKTYKLPVITVRPSNNYGPWQYPEKLIPVVILKALNNEKIPVYGTGQNVREWLYVSDCADAIFEIMEKGKIGEIYNVGSNQERRNIDVVKTILKLLHKNEDLIEFVKDRPGHDFRYSLDTTKIKNELGWEAKTTFEEGIEKTVKWYIENMAWVEKKLKYLKEYWDKVYSV
>NC_015587|1432307:1441225|1437291_1438176_-|WP_015420081.1|DBSCAN-SWA
MKAVILAGGSGTRLYPTTEVLNKHLLPIYNKPMIYYPLSLVMLLGIRDIAIVVNPQDLESFKLLLKDGSHIGINITYIIQEKPRGLAEGLILAKDFIKDDYVLYLLGDNIFFGHDLPKIVSLAKERVLKENGASIFCYHVKDPERFGIAEISEDGKVISLEEKPKHPKSNYAVVGMYVYDKDAVYIAKDIKPSHRGELEITSVNEVYLKANKLYAYILGRGFAWFDAGTHDSFMEASEFISTIEKRTGLMVGCIEEIAYNNGWITKEKLLELAHNLRKTDYGKYLMEIVQDHAF
>NC_015587|1432307:1441225|1434909_1435737_-|WP_015420078.1|DBSCAN-SWA
MKYLILGKNGQLGKAFLNALQNEDILGLDKEDCDISDFDRLKEIFDSYRPDIVLNCSAYNLVDKAETDFPSAYKTNAYGVKNLAYLSKQYNAYFITYSTDYVFDGTKEGLYKEEDTPNPINEYGKSKLSGEIWTLEEGLEKCLIFRTSWVYGDGTQNFVYKLLNWAKNNDILKIAIDEFSVPTPADFLVEKTLKAIDKNLSGLYHLVPNGYASRYEWAKLILKVYGIKKIIIPVSKEVFNLPARRPDFSALDSSKIQKDLNENFEEWNDLLKRFY
>NC_015587|1432307:1441225|1432307_1434878_-|WP_015420077.1|tRNA|DBSCAN-SWA
MKTDEIREKFLSFFENKGHTVVKSASIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRATSCQKCFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLPKDKIYVSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGEKYSQDERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVMQGKDSNFEIDIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGYVIRKVLRRAVRFGYKIGIKEEFLYKSVDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFLETLQNSLELFDRYIAENKSNVISGDFIFKAYDTYGFPLDILQEMAHEKGMTLDMKGFYELLEKQKEESRKHFKSEEKVDEVYLSIKDKARSIFTGYTHTEEQAKALFIIKDGKITEELKEQEDGIIILDKTPFYPEKGGQIGDSGILENSEALFIVNDTKTPTDGVIAHIGKLIKGRLRVGAGVLAKIDKERREDIKRHHTSTHLLHAALRNMFGESVRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEVFVKELPYQEAIKTGAIAIFEEKYGDVVRVISAGDFSKELCGGTHVKRTGDIGYFKIISESSVGAGIRRIIAKAGRKAVREAYEDSNLLKAIYQEIGANKQNLLERLTALKEELKEKDNHIQTLKSKLVRLEAKSSVNLEQINGIKLYWGILEEASLDNLREIADSYRHHPNTVVFLVSKSPKKSILIARSKDLNYDMKAIIKDVAKPMEGSGGGREDLAQGGVQKIETFNSALEVLKSILSK
>NC_015587|1432307:1441225|1438948_1441225_+|WP_015420083.1|DBSCAN-SWA
MRKVFKISGMTCVNCQRTIQIGLKKTKGVEDVDVSLVLERAIVSFDENILSKEDIVKKIKELGYEAQVVEESGVLNLYLDKVDCSTDSCALLTKEDLESLNGVKKAVLDNIKQTLYIEYDKDIISSEDIMAFIRSKGYEASILELDRSKEIALKIAFGIASGILIMALNYSSIAYKDYIEMVLAIAVQFYTAKDFYKGAIASLKAKTGNMDLLVALGSFVSIVYSSFVVFGLLKGNTFFETPTFLVSFVLIGKLIEYRLKKKASAYLKNLTSLNLRSARVLKGTEELIVDSYSLKEGDIVLFKAGDRVSLDIVVKEGSAYIDTSFINGEFEPVFVKEGDNVISGSLVKSGYIKGVVVNIAEKSFINELVRASNLSLEKKPNIQRISDKVSSYFVQAIILISSFVFVIWKIIGVPTEEALNYSVSTLVISCPCAMGIAVPISVMVAVSMAFKNGILIKNAASLETLYKADTFVLDKTGTLTEGTFKVVKEDIKEDKEKVCSLIKHAERFSNHPIGKALYEHCKDYNMDINLTCEEIKGFGIKCEDIYITDVSFWDKDINKKAIGIGTKESLMGIFYLEDAISPYAKDFIKSLKQRKKQIILCSGDTEQNVKYIADTLGIEHYFASMSPTDKSNLIKRLKDENHIVCMVGDGINDAKAMALSDVGIAVSKALDAAKVSTDIVVSSGGLEKIIYLLDLTDKFMKNVKQNLFWAFGYNAVMIPSAAGIFSKYGIYIEPQFAGLLMGLSSVSVVLNAMRLSKA
>NC_015587|1432307:1441225|1436729_1437302_-|WP_015420080.1|DBSCAN-SWA
MPFEFIKTDIKEVILIKPKVFEDERGFFLESYKKSEFEENGITDVFIQDNHSKSVKGVLRGLHYQKEPEAQGKLVRCIKGKIFDVAVDIRKNSPTYGKWVGYELSEENKLMLFIPKGFAHGFLTLSEEAEVIYKVSGAEYSKEHDKGIIWNDKTINIKWPLEHIKEVILSDKDKNLPTLEQADNNFLYGG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015420077.1|1432307_1434878_-|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.7e-73	35.3
WP_015420078.1|1434909_1435737_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.5e-31	35.6
WP_015420079.1|1435733_1436726_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-72	46.2
WP_015420080.1|1436729_1437302_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-41	47.5
WP_015420081.1|1437291_1438176_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.2e-93	55.6
WP_015420082.1|1438212_1438890_+	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	5.8e-10	32.8
WP_015420083.1|1438948_1441225_+	cation-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.3e-73	28.2