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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015577 Treponema azotonutricium ZAS-9, complete sequence 5 crisprs csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2,WYL 1 2 8 0

Results visualization

1. NC_015577
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015577_1 2606603-2606701 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015577_2 2881858-2881965 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015577_3 3383326-3384664 TypeIII NA
18 spacers
cas6,csm3gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,csx20,cas1,cas2,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015577_4 3386205-3386386 TypeIII NA
2 spacers
cas2,cas1,cas6,csm3gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015577_5 3748263-3748368 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 NC_015577.1 356197-356223 2 0.926

1. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to position: 356197-356223, mismatch: 2, identity: 0.926

attaactggccgctttcgcggcctacg	CRISPR spacer
attgactggccgctgtcgcggcctacg	Protospacer
***.********** ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 KM389212 UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence 48609-48635 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 NC_030929 Pseudomonas phage JBD44, complete genome 31472-31498 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 NZ_CP032053 Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence 33237-33263 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 JX403939 Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome 45961-45987 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 KM389210 UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence 496-522 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 KM389463 UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence 355-381 5 0.815
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 MH617298 Inoviridae sp. isolate ctbi36, complete genome 3317-3343 6 0.778
NC_015577_1 1.1|2606639|27|NC_015577|CRISPRCasFinder 2606639-2606665 27 NZ_CP017565 Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence 117675-117701 7 0.741
NC_015577_5 5.1|3748300|32|NC_015577|CRISPRCasFinder 3748300-3748331 32 NZ_CP040853 Lactobacillus murinus strain V10 plasmid unnamed, complete sequence 60581-60612 7 0.781
NC_015577_5 5.1|3748300|32|NC_015577|CRISPRCasFinder 3748300-3748331 32 NZ_CP040853 Lactobacillus murinus strain V10 plasmid unnamed, complete sequence 83421-83452 7 0.781

1. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to KM389212 (UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
gtcaactggccgctttcgtggccgacc	Protospacer
.*.***************.**** ** 

2. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to NC_030929 (Pseudomonas phage JBD44, complete genome) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
gtcaactggccgctttcgtggccgacc	Protospacer
.*.***************.**** ** 

3. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to NZ_CP032053 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
ggtcaccggccgctttcgcggccttcg	Protospacer
. * **.***************** **

4. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to JX403939 (Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
gtcaactggccgctttcgtggccgacc	Protospacer
.*.***************.**** ** 

5. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to KM389210 (UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
gtcaactggccgctttcgtggccgacc	Protospacer
.*.***************.**** ** 

6. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to KM389463 (UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence) position: , mismatch: 5, identity: 0.815

attaactggccgctttcgcggcctacg	CRISPR spacer
gtcaactggccgctttcgtggccgacc	Protospacer
.*.***************.**** ** 

7. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to MH617298 (Inoviridae sp. isolate ctbi36, complete genome) position: , mismatch: 6, identity: 0.778

attaactggccgctttcgcggcctacg	CRISPR spacer
tttaactggccgcgttagcggcctttt	Protospacer
 ************ ** ******* . 

8. spacer 1.1|2606639|27|NC_015577|CRISPRCasFinder matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 7, identity: 0.741

attaactggccgctttcgcggcctacg	CRISPR spacer
gcatcctggccgctttcgcggcctgca	Protospacer
..   *******************.*.

9. spacer 5.1|3748300|32|NC_015577|CRISPRCasFinder matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tgacgatacctttcggaatagttatatttttt	CRISPR spacer
tgtttaaatcttctggaatagttatatttttt	Protospacer
** . * *.***..******************

10. spacer 5.1|3748300|32|NC_015577|CRISPRCasFinder matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tgacgatacctttcggaatagttatatttttt	CRISPR spacer
tgtttaaatcttctggaatagttatatttttt	Protospacer
** . * *.***..******************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 401991 : 453296 54 Bacillus_phage(22.22%) portal,tRNA,integrase,terminase,transposase,protease,capsid,head attL 399459:399474|attR 430142:430157
DBSCAN-SWA_2 1134268 : 1141962 9 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_3 1335399 : 1397545 49 Tupanvirus(10.0%) portal,tRNA,integrase,transposase,head,protease,capsid,terminase attL 1389833:1389847|attR 1391476:1391490
DBSCAN-SWA_4 1690169 : 1749829 51 Hirudovirus(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_5 1839238 : 1884354 59 Streptococcus_phage(42.86%) holin,integrase,transposase,protease,capsid attL 1849473:1849488|attR 1884935:1884950
DBSCAN-SWA_6 2056320 : 2119390 60 Staphylococcus_phage(28.57%) integrase,transposase attL 2084682:2084734|attR 2119501:2119553
DBSCAN-SWA_7 2140497 : 2184656 31 Vibrio_phage(16.67%) integrase,tRNA,transposase attL 2153460:2153474|attR 2164069:2164083
DBSCAN-SWA_8 3729182 : 3788799 49 uncultured_virus(40.0%) tRNA,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage