CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015259	Polymorphum gilvum SL003B-26A1, complete sequence	2 crisprs	WYL,csa3,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	14	9	0
NC_015258	Polymorphum gilvum SL003B-26A1 plasmid pSL003B, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015259_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015259_1

408444-408537

Orphan

Consensus_repeat	Method
GATCATTTGTCTCTCATATTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015259_1

>merge|NC_015259|1|408444-408537|CRISPRCasFinder
GATCATTTGTCTCTCATATTTCGCAGAAAGTGATACGCAACGCCACTCGATGTGAACTTATGCGAGACAAGAGCATTTGTCTCTCATATTTCGC

>NC_015259|1|1|408444-408537|CRISPRCasFinder
GATCATTTGTCTCTCATATTTCGC	AGAAAGTGATACGCAACGCCACTCGATGTGAACTTATGCGAGACAA
GAGCATTTGTCTCTCATATTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015259.1\|WP_013651161.1\|403833_407277_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NC_015259.1\|WP_013651167.1\|413186_414263_+\|imelysin-family-protein	unknown	unknown	gnl\|CDD\|271142
NC_015259.1\|WP_013651156.1\|398345_398684_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NC_015259.1\|WP_013651151.1\|392897_393617_+\|hypothetical-protein	unknown	unknown	unknown
NC_015259.1\|WP_013651170.1\|416329_419752_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_015259.1\|WP_013651153.1\|394736_396197_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227123
NC_015259.1\|WP_041375317.1\|398853_399273_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NC_015259.1\|WP_041375748.1\|410262_411546_+\|peptidase	unknown	unknown	gnl\|CDD\|226018
NC_015259.1\|WP_013651163.1\|408679_409435_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|180590
NC_015259.1\|WP_013651155.1\|397364_397943_-\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NC_015259.1\|WP_013651164.1\|409490_409955_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|226588
NC_015259.1\|WP_013651168.1\|414243_415401_+\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|377834
NC_015259.1\|WP_013651173.1\|421576_423208_+\|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl\|CDD\|200272
NC_015259.1\|WP_013651169.1\|415431_416349_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381147
NC_015259.1\|WP_148259375.1\|396254_397112_-\|RNA-polymerase-factor-sigma-32	unknown	unknown	gnl\|CDD\|236033
NC_015259.1\|WP_041375319.1\|411669_413187_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NC_015259.1\|WP_148259227.1\|393813_394692_+\|hypothetical-protein	unknown	unknown	unknown
NC_015259.1\|WP_013651172.1\|420104_421403_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NC_015259.1\|WP_013651160.1\|403039_403759_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377050
NC_015259.1\|WP_049792538.1\|399272_402338_-\|helicase	unknown	unknown	gnl\|CDD\|350192

Protein	Function_ID	Function_description	E-value
NC_015259.1\|WP_013651161.1\|403833_407277_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NC_015259.1\|WP_013651167.1\|413186_414263_+\|imelysin-family-protein	gnl\|CDD\|271142	cd14659, Imelysin-like_IPPA, Imelysin-like protein. This family includes insulin-cleaving membrane protease (imelysin, ICMP)-like protein (IPPA from Psychrobacter arcticus), the Pseudomonas aeruginosa PA4372 and Vibrio cholera VC1266 Fur-regulated imelysin-like protein. They share the overall fold and a similar functional site as the insulin-cleaving membrane protease (ICMP). However, IPPA adopts a structure distinctive from the known HxxE metallopeptidases or iron-binding proteins, suggesting this protein may not be a peptidase; the histidine in the GxHxxE motif region is no longer conserved (GxxxxE), indicating a possible loss of enzymatic function or a change in substrate preference (compared to imelysin and IrpA families). A putative functional site for this non-peptidase homolog is located at the domain interface. The tertiary structure shows a fold consisting of two domains, each of which consists of a bundle of four helices that are similar to each other, implying an ancient gene duplication and fusion event.	1.99867e-71
NC_015259.1\|WP_013651156.1\|398345_398684_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	2.13406e-21
NC_015259.1\|WP_013651172.1\|420104_421403_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NC_015259.1\|WP_013651170.1\|416329_419752_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.11984e-61
NC_015259.1\|WP_013651169.1\|415431_416349_-\|response-regulator-transcription-factor	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.7289e-48
NC_015259.1\|WP_041375317.1\|398853_399273_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	3.78597e-29
NC_015259.1\|WP_041375748.1\|410262_411546_+\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NC_015259.1\|WP_013651163.1\|408679_409435_-\|glutamine-amidotransferase	gnl\|CDD\|180590	PRK06490, PRK06490, glutamine amidotransferase; Provisional.	1.57117e-151
NC_015259.1\|WP_013651155.1\|397364_397943_-\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	2.13618e-70
NC_015259.1\|WP_013651164.1\|409490_409955_-\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|226588	COG4103, COG4103, Uncharacterized protein conserved in bacteria [Function unknown].	9.09192e-44
NC_015259.1\|WP_013651168.1\|414243_415401_+\|DUF1513-domain-containing-protein	gnl\|CDD\|377834	pfam07433, DUF1513, Protein of unknown function (DUF1513). This family consists of several bacterial proteins of around 360 residues in length. The function of this family is unknown.	3.58385e-123
NC_015259.1\|WP_013651173.1\|421576_423208_+\|urea-ABC-transporter-permease-subunit-UrtB	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.95326e-154
NC_015259.1\|WP_148259375.1\|396254_397112_-\|RNA-polymerase-factor-sigma-32	gnl\|CDD\|236033	PRK07500, rpoH2, RNA polymerase factor sigma-32; Reviewed.	1.77395e-154
NC_015259.1\|WP_041375319.1\|411669_413187_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NC_015259.1\|WP_013651153.1\|394736_396197_+\|M48-family-metalloprotease	gnl\|CDD\|227123	COG4784, COG4784, Putative Zn-dependent protease [General function prediction only].	1.40885e-163
NC_015259.1\|WP_013651160.1\|403039_403759_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	1.10848e-23
NC_015259.1\|WP_049792538.1\|399272_402338_-\|helicase	gnl\|CDD\|350192	cd18805, SF2_C_suv3, C-terminal helicase domain of ATP-dependent RNA helicase. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in mitochondria and is a subunit of the degradosome complex involved in regulation of RNA surveillance and turnover. SUV3 exhibits DNA and RNA-dependent ATPase, DNA and RNA-binding and DNA and RNA unwinding activities. SUV3 is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.24953e-31

>NC_015259.1|WP_013651161.1|403833_407277_+|pyruvate-carboxylase
MAIRKILVANRSEIAIRVFRAANELGLRTVAVFAEQDKLALHRFKADEAYQVGRGLGPIEAYLSIDEILRVARLAEVDAIHPGYGFLSESPEFAEACEREGIVFIGPRPDTMRRLGNKVAARNLAIEAGVPVMPATEPLPDALPEIAAQAAAIGYPLMLKASWGGGGRGMRVIPDEKSLLKEVVAAKREARAAFGKDEIYLEKLVERARHVEVQILGDGHGNLVHLYERDCSIQRRHQKVVERAPAPYLVPEDRRKLAGYALAICESVSYRGAGTVEFLMDADTGAIYFIEVNPRIQVEHTVTEEVTGIDIVKAQIRIAGGARIGSPDSGVPVQDDIRLNGHALQCRITTEDPEQAFIPDYGRITAYRGATGFGIRLDGGTAYSGAVITRYYDPLLEKVTAWAPTAEEACRRMDRALREFRIRGVATNLAFLENIVGHPSFRANDYTTRFIDETPELFAQVRRQDRATKLLTYIADVSVNGHPETRARIRPPQDAPRPEAPDFGTVKPAGTRQLLQELSPKGFADWMKAQKQVLVTDTTMRDAHQSLLATRMRSHDIVAIADAYAAALPQLLSLECWGGATFDVAMRFLTEDPWERLRLIRHKAPNILLQMLLRGSNGVGYTNYPDNVVRFFVKQAADTGVDLFRVFDCLNWVDNMRVAMDAVQEAGKLCEGALCYTGDLTDSARPKYDLKYYVGLARELEAAGAHILGIKDMAGLLKPAAARLLVRALKEETGLPIHFHTHDTSGLSAASVLAAVEAGADAVDAAMDALSGLTSQPCLGSVVEALRGGDRDPGLDPQAIRRISFYWEAVRTQYRAFESDLRAGASEVYLHEMPGGQFTNLKEQARSLGLETRWHEVAQAYADANMMFGDIVKVTPSSKVVGDMALMMVSQGLTVADVENPDKDVAFPDSVLQMLRGDLGQPPGGWPAALQEKVLKAMAPITVRPGSLLAEENLEARRAEAAEKTGLAIDDAALASYLMYPKVFTDFARAQAQYGPTSVLPTPVYFYGLEPGEEILVDLEPGKTLVVRCQAFGETDERGEKKVFFELNGQPRIVKVPDRAHGAAGTAVRRKAESGNETHVGAPMPGVVSGVAVSAGQAVKAGDVLVSIEAMKMETALHAERDGTIAEVLVTPGSQIDAKDLLVVFQA
>NC_015259.1|WP_013651160.1|403039_403759_+|LuxR-family-transcriptional-regulator
MSRLTEALDLAEQIGRLETAQDVSARLGALARDYGFHAHVLASFQGPGTVAEPRILAAGWAQEWQERYLVNQYAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGVFIPVYGPKGLEGGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGTLTPRELECLKWVAAGKTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMIG
>NC_015259.1|WP_049792538.1|399272_402338_-|helicase
MPPRQNMPLPPAARSKTVTAVLGPTNTGKTHLAIERMIAQPSGLIGLPLRLLAREVYGRLVARAGEAAVALITGEEKIIPAAPRFWVSTVEAMPLDLDTEFVAIDEVQLAGDLERGHVFTNRILNLRGRSETLLLGAATARPLLEKLIPGLNVVTRPRMSVLSYSGSKKISRLPTRSAVVAFSSGEVYAIAELIRRQRGGAAVVLGSLSPRTRNAQVELFQNGDVDYLVATDAIGMGLNLDVDHIAFAGNRKFDGYQYRALSPAEMGQIAGRAGRHTRDGSFGVTGRVDPLADDLVETIESHRFDALKVFQWRNSLLDFSSLAALRNALDLPPREDGLTRAPPGDDIMALDHAARDDEIRALATTPARIELLWDVCQVPDYRKIAPANHADLLTHLYTHLVRHGAIDEDWFQRQLAFADRTDGDIDTLANRIAHIRTWTFVANRADWLKDPAHWQGVTRGIEDKLSDALHDRLTQRFVDRRTSVLMRRLRENAMLEAEITPSGDVLVEGQHIGHLQGFRFAPDAAADGPEGKAVRAAAQKALASEIESRADRLSRAGNEDFILATDGTLRWQGEPVARLTAGDTALTPHFLLLADDQLTGPAREKVQARIDLWIKAHVGTLLKPLEDLRQAEGLEGLARGVAYRIYEQLGILERQEAANEVRQLDQGMRASLRKLGVRFGAYNIYIPALLKPAPSQLLAQLWALKHGTPDMPGLAELPQLSASGRTSIPVDPQIDKALYKVVGFRVCGPRAVRIDILERLADLIRPLIAWKPLDKEVAPPDGAIAQGGGFTVTVAMTSLLGCAGEDFSAILKSLGYRLERREVDLPPAPAVVPVAEAGAAGESGTEAAPATDDAPAPTQADADAGTAKTEAQAATEPAADLADASELAAADEPTASGQPEPQAQGETEASTTVVIEIWRPGRPERPGRSQGDGEQRGERKGRGDKRPHGPRRGKDTQGGEHRKEADQRHKSSGPDRREERRNAGKPAGQRDKAPRRDKPVDPDSPFAALMALKASMEKGEK
>NC_015259.1|WP_041375317.1|398853_399273_-|RNA-binding-S4-domain-containing-protein
MSGTAPAAPGQATQRIDKWLWFARVAKSRTLAQKLALAGQVRLNREKIASASKAVRIGDVLTITLDRKVLVLKIAALGSRRGPAPEARALYEDLSPPPPDNPVPGDLPQGQREQGSGRPTKRERRQLDALRQQDGKNGY
>NC_015259.1|WP_013651156.1|398345_398684_-|ferredoxin-family-protein
MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTEPGLEKWIEINAEYAAKWPNITVKKDPLPEAAEFDGKAGKFEQYFSPNGPDGK
>NC_015259.1|WP_013651155.1|397364_397943_-|CarD-family-transcriptional-regulator
MATITKKAAQRQGFKTGEHIVYPSHGVGQITAIEEQSVAGHSLELLVISFEKDKMTLRVPVAKIATVGMRKLADAPTVKKALETVRGRPRIKRTMWSRRAQEYEAKINSGDLISISEVVRDLYRSDTQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLARTPNRAKDAEAGDDEGEQEEAA
>NC_015259.1|WP_148259375.1|396254_397112_-|RNA-polymerase-factor-sigma-32
MSTRRQLVKAAMNAPYLTREEELELATRWRQDKDVAALERLSLAHMRLVIAVASRFRNFGLPMNDLIQEGHVGLLEAAARFEPEREVRFSTYATWWIRASIQDYILRNWSIVRGGTSSTQKALFFNLRRLRAKLSSNRVDLPETELHRQIAEAIGVKTADVDLMNARLSGPDTSLNAPIIDSDGSSADRQDFLISDAPLPDETVSENIDSERQRRWLRSAMNVLTERERKIVSERRLTEEGATLEALGAKMGISKERVRQIENRALEKLREALLKAQPDRLALTR
>NC_015259.1|WP_013651153.1|394736_396197_+|M48-family-metalloprotease
MPCVLRRTRRIAVVAVAFALLSGCQLLGSKSPSVGVVTPGTLRPGLAADIGAREHPRVVATYGGVYENPGAERAIARVVGRLVEASEDPSQSYKITILNSPAVNAFALPGGYLYVTRGLLALANDTSEVAAVLAHEMAHVTANHAIERQQKAEATELANRVVSNVVRDPDRIRQAMISTQLSFARFSQVQELQADLVGVKTLSKAGFDPFAAARFLNSMAAFAAFQSARNDGSSAPDFLSSHPTTPERVNLAVQAARQVGAPGVGERDRSAYLANIDGMLYGDDPLEGFVRGRDFLHKALGIGFTVPEGYVLENSSEAVLASNGSGTAMRFDGADLTNYDKLGDYMTAGWINGLIPDSVRETTINGLAAVVGSAITQGWSFRIAVVRIGRNGYRFIFASRDPNPAFTRDYERTIESFRQLTPTERARLQSLRIKIVQTQPGDTPRRLAIGMSGVEPSRRLEFFSILNGFSADEEIPAGTSVKLVID
>NC_015259.1|WP_148259227.1|393813_394692_+|hypothetical-protein
MAAIAPQKRVLCDRMNALSLFPRRSFVRCPPLPRCAQRIGRGTACALAALLPSVPAGAQAPIPQACFAQDVQPEAVEIVAGEPFGAVLLADGRRLRLAEIRLADEVGMAVEGRALIVVTGAQDRWGQLPAHVLAQGPHGAVWLQADLLERGLAVVDPETGGLSCLQPLLAAEDAARHRDVGLWRVAPVLRADQPDLLLARTGHFAVVEGRIHSLGKTRRYRYLNFGRHWASDFTATVDTRVEADLTARGLALDDLNGARVRIRGVVQAQDGPHIELTHPAQLERLPMEQIAQ
>NC_015259.1|WP_013651151.1|392897_393617_+|hypothetical-protein
MNPDIGPINEIADIDIFVISPPKCATTSIQRGFERLGHKVLHAHNDLTTHDAFANGAILRRHGVGLLRLIEARQATSRRPAFFFCGYREVVAWYLSLAGQFGLPMTDDLTVDVPSALDLKMPWKNYSFEEPRRILEAATGLGMTGARAENGVCIQTKGRATLVFYRADRTDVVAQFIRSRIDPGFENRRERENADPAYAEFRARFRLPEPVLRRFYSDPVHAFFYKAEETETLVATYAA
>NC_015259.1|WP_013651163.1|408679_409435_-|glutamine-amidotransferase
MRFQSLEQPARPRVLVVLHQENSSPGRVGQELVKRGFALDIRKPRFGDSLPRTLADHAGAVIFGGPMSANDSDAFVQREIDWIGVPLKEKKPFLGICLGAQMMVRYLGGKVCCHNDGLVEIGYYPLRPTDSGRALMKWPGRVYQWHREGFDLPAGCELLAEGETYRNQAIRYGPAAYGIQFHPELTHAMMVRWTTKGAPRMALPGAQQRHDHFAGRYIFDGAVRAWLHEFLDLWIGHADDHRQTCLAAAAE
>NC_015259.1|WP_013651164.1|409490_409955_-|TerB-family-tellurite-resistance-protein
MLTAFKRFIRDVTFGESEKLTFAADDHRLAAAALLFHVTGVDGVVDEAESRKLRAILQSHYGLSDADTDELIKLAGDRDNEAVDLYGFTSVLKRKTDAEERLKIVEMMWEIVYADGHVHEFEDNTIWRVAELLGVSSRDRLALRQKVARDQAES
>NC_015259.1|WP_041375748.1|410262_411546_+|peptidase
MRSLRLMLLAATAIVAGAVVTGSALADAPKPADVLATYGDVAQAGYEDSLATARALKAAVEALVASPSDDTLAAARQAWLAARVPYQQTEAFRFGNAIVDDWEGKVNAWPLDEGLIDYVDTAYGDSSEENPFYAANVIANPKLTVAGEEIDASEITPALLSETLQEAGEIEANVATGYHAIEFLLWGQDLNGTDAGAGARPASDYDTANCTGGNCDRRIAYLRAVTDLLIADLEEMAVAWAPGGAARAELAAKGEGGGLATILTGMGSLSYGELAGERMKLGLMLHDPEEEHDCFSDNTHLSHYYDVVGIRNVYFGEYARVDGSKVEGASLADMVAARDPALAEEMKARLDATLAAFEALKTRAETVEAYDQMIGEGNAEGNAVVQAAVDALVDQTRSIERVVAVLGLEAIAFEGSDSLDNPSAVFQ
>NC_015259.1|WP_041375319.1|411669_413187_+|c-type-cytochrome
MKLSRLLAPALLGAMVALPSAAGEPLAHRDDLTQADRARVEAVLAPPVDYSKAEPFEAMSGGAATSRKRINRDAFSHPSANLSFEQQQTFRVGNGIFRKMWVSAPSSTQASDGLGPLYNARSCQGCHLKDGRGSPPAPGADAVSMFLRLSVPPRSEAERQALAERRLSHIPEPTYGTQLQLFGVPGLAGEGRFDIEVEEIEVALAGGETAVLQKPVYRIHSLGYGPMDPETMISPRVAPQMIGLGLLEAIHSGDILAMADPEDADGDGISGRPSFVRDPDTGAVVLGRFGWKASTPSVREQSAGAFSGDIGISTPGHPDPYGDCTAAQTACRAMPTGVQERLGDTEAPDPVMDLVTFYSQNLAVPARRNADDPTVLAGKEIFHAIGCASCHRPTYVTRRDADTEAHRFQLIWPYTDLLLHDMGEGLADHRPVGDASGTEWRTAPLWGIGLTETVSGHTRFLHDGRARNLLEAVLWHGGEAQAAREAVVALEPEQRAALIRFLESL
>NC_015259.1|WP_013651167.1|413186_414263_+|imelysin-family-protein
MRRLLAAFGLLAGLVGPAAAVDYAGFVEAGLTGFIRPATQAFADTAADLAPAVRSVCAAPSETTRRTFAEVNSATIRALGRIGFLRFGPLAESHRLERLAFLPDPRGIGQRQIRKLVADRDPSALDTAQLAAKSVAVQGLTALQIVAFDDAGAVVLGGDGEEAAFLCGYAAAITDNVGRIGAEVASGWADPAGYSRTLLEPAPDAPVLRSPKDAAEQIFNALVTGLIVVKDQDLLPALGKGVDSARANRIPFSRSGDGVAYLTAEIEGLHDAWLAAGYERDLDAEGAWIPASLAFEFANALKALAGVPAPVRRSMADPATYDRLAYLVLVLNSLRDMMALNLAGSLGMTGGFNALDGD
>NC_015259.1|WP_013651168.1|414243_415401_+|DUF1513-domain-containing-protein
MRWTATERTRLDRRGFLAALGGATAGALALDPRTAYAVELLIGADPEEPLFASARRNADGRHAVAVMTADGRDLIEVPLPGRGHGIAVSPDRRRLMAFARRPGTFAVLFDRDGRSAPQVIASPAGRHFYGHGAFSPDGRLVLAVENDFEAARGVVGLYDVSGPAVRRLGEIDTFGVGPHDLLFADGGRTLVVANGGIETHPDHGRDKLNLDTMRPSVVFLDAASGTLLAEHRLSDDLHQLSLRHMGLDARGRVWVGGQFEGDPGLTPPLVARLARDEAPLVLGAPAAVARSLHNYVGSVAVNVAGDVVATSCPRGGRVLYWDAASGALLGAQDIADGCGLAPIDETGFLVSDGFGALSYVPDPTARPEVLGRPAGVAWDNHMAAL
>NC_015259.1|WP_013651169.1|415431_416349_-|response-regulator-transcription-factor
MTNGVPERDIVLVVDDSPETLGFLTQALERSGVTVLVATSGQAALSVAERVTPDMVLMDAVMPEMDGFETCRRIKTRPALQHVPVIFMTGLSETEHVVHALESGGVDFLTKPINIDELQARIRVHLANARQVQSARIALDAAGRHLIAVSAAGLPVWSTPQTRQALDAALAQTGGETLLTARLASWLATDAPAPRAASFALDLAPGVALQMHYLGPIGPDEFLFRLTTADHPNQDETLRRHFGLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENRASAAVRAAQVLHEL
>NC_015259.1|WP_013651170.1|416329_419752_-|response-regulator
MTARQRILPVRRQYNQWVNNQTLEDYALRFTAKSARRFSSARISQTAIGAISFLALEAIGGAITLSYGTANAFVAILAGSLVLLVVGLPIARTAMRHGVDIDLLTRGAGFGYIGSTVTSLIYASFTFILFAIEASIMSSALEYAFGLPLWIGYIVSALAVIPLVTHGIALISRFQLVTQPFWIVLNIAPFAFIAAADWQAFGAWLDFAGIDPATGTLRPEGSNPIDLLQFGAAAAVILALMAQIGEQVDFLRFLPEQEPLRRRHRLALFLAGPGWVVLGAPKMLAGSFLAVLVLSAGIPVEHADEPSRMFAVAFGYMLPSEQAALLLMAAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHPGRVVWLVFNVGIALLLMELGIYRLLEETLGVFSIVAMAWLSAISADLFVNKPLGLSPPGIEFKRAHLHDVNPVGTGAMVLAATVALVAHYGWFGREAAALATFLAMAIAFLAAPAIAALTRGRYYLARKPRRHWQSKLAITCSICENPFEPEDMAYCPAYQAPICSLCCSLDARCHDLCKPKARVAHQVGSLAERVLPAPVLARLRTRLGRYLVTSTLAIAAIGLALLVIYHQAAVYRPDDSGVVGQTVALIFFVFAILAGIAAWFLVLAHDTRHVAEEESARQTALLLKEIEAHRRTDAALQKAKEAAEAANLAKSRYVVGLSHELRTPLNAVLGYAQVLERDEAIPRERKASINVIRRSAEHLSGLIDGLLDISRIEAGRLQVYSNEINIHDFLDQIVAMFRLQAQAKGLGFSFARADNLPAVVRTDEKRLRQILVNLLSNALKFTDTGAIGLEVGYRSQVATFRVTDTGRGIAPVDLPRIFEAFGRGEEDRLKKTPGLGLGLTITKLLAETLGGAIRVDSAPGCGSTFEVRLMLAAVADPKPAAALERRPTGYAGPRRTVLVVDDNLDHRELMTEILAPLGFVVLTAEDGPRCLALVAEVVPDLFLVDISMPGMTGWELVARLRAVGHAAPVIMLSANIGDGASRPTGEALHNDTLAKPFDLRQLLDKLEKHLGLEWTFTNAADGKVDAAPAPAVAAGGAPIRFKSPGAAHVRDLISLGEIGYVHGIEAKLSQLAEEPDNAAVVAALRGHIEKFDFAGYRAVLKGLGEDDQRGS
>NC_015259.1|WP_013651172.1|420104_421403_+|urea-ABC-transporter-substrate-binding-protein
MNNKLAARSAGLVLASLMASTIMTGAMAQEDTIKVGILHSLSGTMAISETTLKDVMLMLIEEQNKKGGLLGKKLEAVVVDPASDWPLFAEKARELISVNKVSAVFGCWTSVSRKSVLPVFEELNSILFYPVQYEGEESQRNVFYTGAAPNQQAIPAVDYLMNEEGVERWVLAGTDYVYPRTTNKILEAYLKSKGVAEEDIMINYTPFGHSDWQTIVSDIKAFGSAGKKTAVVSTINGDANVPFYKELGNAGIKAEDIPVVAFSVGEEELAGLDTAPLVGHLAAWNYFQSADTEINAEFIDTWRAFIKDDKRVTNDPMEAHFIGFNMWVKAVEKAGTTDTDAVIDALIGVSVPNLTGGYSAMMPNHHITKPVLIGEIQEDGQFETVWETTGLVVGDEWSDYLDGSKDLIADWRAPLSCGNFNVKTGKCGGSGS
>NC_015259.1|WP_013651173.1|421576_423208_+|urea-ABC-transporter-permease-subunit-UrtB
MPLLRTLIFILGSLLPALAPVQAQGDLAGLRPLIDALARGGFKETEAQVGALAATGNPAVAPALEALAEGNLYERKSDGAVVIAVKAGRDMARDMALTDPLSGAALGEAASRDLAKIKVNNSLRRVIRSALGALTLMAKDPAVRRQAAEAVFKARDAEAVEALDEAIAAETDAGVRRLMEQARAAAVLASDRAEDEKRAAVDVLAARGDRDALSLLIGLSASAEGALRDAADTAVTRINKSLVMWDAAQNVWYGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMIGAYVTFVVQEVIRGSAPGLFDYSLLIALPLAFLVAGAVGIGIERGIIRFLYGRPLETLLATWGLSLILQQAVRSLFGPTNREVGNPSFMSGAFDIGQLTITYNRMWIVVFALVVFAGLILVLKKTSFGLSMRAVTQNRRMAASMGIRTPWIDAFTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGAITLGVVNKFLEPYAGAVLGKILVLVFIILFIQKRPRGLFALKGRAVEA

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Crispr_ID: NC_015259_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015259_2

3059917-3061785

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTCTCCCCCGCCTACGCGGGGATGAACCC	PILER-CR
GTCTCCCCCGCCTACGCGGGGATGAACCC	CRISPRCasFinder
GTCTCCCCCGCCTACGCGGGGATGAACCC	CRT

30 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_015259_2

>merge|NC_015259|2|3059917-3061785|PILER-CR,CRISPRCasFinder,CRT
GTCTCCCCCGCCTACGCGGGGATGAACCCACCTTGAAGGTCGAAAGGCCCTGGACGAACGAGTCTCCCCCGCCTACGCGGGGATGAACCCGCTACCCGCATACATGCCGCAACTCTTCAAGCGTCTCCCCCGCCTACGCGGGGATGAACCCGATCACTGGTTCCCGCTTTCCAGTTTAACAGAGTCTCCCCCGCCTACGCGGGGATGAACCCTGGACTCAATCCCGGATCCACGCTCCGCCGTGGTCTCCCCCGCCTACGCGGGGATGAACCCTTAAGGGACGTCGGCGCGGTCTCATCACAGTCGTCTCCCCCGCCTACGCGGGGATGAACCCACGGACGTGTCGCGGAGGCCAGGGCAAAAGCTGTCTCCCCCGCCTACGCGGGGATGAACCCTTCCGCCCCGCCTGCCTCGACCCTCGCGGCATGTCTCCCCCGCCTACGCGGGGATGAACCCGGGATCATGGCCGTTGCCCTTGATGGTAATACGTCTCCCCCGCCTACGCGGGGATGAACCCTCGATCACCAAGGGGTCGCTGGTCGCGTGCGCGTCTCCCCCGCCTACGCGGGGATGAACCCTTTGCGCGTAGCTATTTGGTACTTGCCCTTTTGTCTCCCCCGCCTACGCGGGGATGAACCCCCGCGCCCGAGGCAACGCCCCAATCGCCCCCGGTCTCCCCCGCCTACGCGGGGATGAACCCGGCCGGCGACGGGATTGAAGCCAGGTGGGGAGGTCTCCCCCGCCTACGCGGGGATGAACCCTCGATAGACGCATGGGACAAACTGGACGACAGGTCTCCCCCGCCTACGCGGGGATGAACCCGGTCGCGGCACGTGATACCTGCCGAACGGACGGTCTCCCCCGCCTACGCGGGGATGAACCCCTTGCCGGCGCCAGGCTTATCGGCGCCAACCTGTCTCCCCCGCCTACGCGGGGATGAACCCGATTTGCTGTATGCCAGCTTGTATAGATCCGGGTCTCCCCCGCCTACGCGGGGATGAACCCGAGGACGACGGGGTATTTGACCCGGTCGAGTAGTCTCCCCCGCCTACGCGGGGATGAACCCGGGCCAAGCCGGAAGTAAGGGAAATCAGAGCCGTCTCCCCCGCCTACGCGGGGATGAACCCGAGTTGAATAATGCACCGATCCAAGTGCACGGGTCTCCCCCGCCTACGCGGGGATGAACCCAAGCCCGGCGGCTCCATCGCCGGGCTTTCGCCGTCTCCCCCGCCTACGCGGGGATGAACCCCTTTTACCGGCTCGATTTCGACGCGGACGTTTAGTCTCCCCCGCCTACGCGGGGATGAACCCCATTGCTCTCGACCTCGCTTATCGCTTCAAGGGTCTCCCCCGCCTACGCGGGGATGAACCCGATTTCCACCGTTCCCGCCTCGATCGCGACGATCGCCCGGAGTCTCCCCCGCCTACGCGGGGATGAACCCCTTCCGGCCGGGCCTCACCTTGCCCTGCGCGGGTCTCCCCCGCCTACGCGGGGATGAACCCTTCACGCGTGCCGATATGACCGGTTCCGCTCTGTCTCCCCCGCCTACGCGGGGATGAACCTTTTTGACAGCGAGGAGACTACTATCATGACACGTCTCCCCCGCCTACGCGGGGATGAACCCGCAAGTGACTGATCGACTTGAGCCTTATCAGAGTCTCCCCCGCCTACGCGGGGATGAACCCGTCATAGATTGCGCGCCCCTCTTTGCGTCATGGTCTCCCCCGCCTACGCGGGGATGAACCCGCTTTCATTATCATCGTCGACGCAGCTCATGAGTCTCCCCCGCCTACGCGGGGATGAACCGTGTTTGTAGGAGGGGGCGGCCCGCACGCTTACGTCTCCCCCGCCTGCGCGGGGATGAATGC

>NC_015259|2|1|3059917-3061724|PILER-CR
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACCTTGAAGGTCGAAAGGCCCTGGACGAACGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTACCCGCATACATGCCGCAACTCTTCAAGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATCACTGGTTCCCGCTTTCCAGTTTAACAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	TGGACTCAATCCCGGATCCACGCTCCGCCGTG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTAAGGGACGTCGGCGCGGTCTCATCACAGTC
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACGGACGTGTCGCGGAGGCCAGGGCAAAAGCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCCGCCCCGCCTGCCTCGACCCTCGCGGCAT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGATCATGGCCGTTGCCCTTGATGGTAATAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATCACCAAGGGGTCGCTGGTCGCGTGCGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTTGCGCGTAGCTATTTGGTACTTGCCCTTTT
GTCTCCCCCGCCTACGCGGGGATGAACCC	CCGCGCCCGAGGCAACGCCCCAATCGCCCCCG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGCCGGCGACGGGATTGAAGCCAGGTGGGGAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATAGACGCATGGGACAAACTGGACGACAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGTCGCGGCACGTGATACCTGCCGAACGGACG
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTGCCGGCGCCAGGCTTATCGGCGCCAACCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTGCTGTATGCCAGCTTGTATAGATCCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGGACGACGGGGTATTTGACCCGGTCGAGTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGCCAAGCCGGAAGTAAGGGAAATCAGAGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGTTGAATAATGCACCGATCCAAGTGCACGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	AAGCCCGGCGGCTCCATCGCCGGGCTTTCGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTTTACCGGCTCGATTTCGACGCGGACGTTTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CATTGCTCTCGACCTCGCTTATCGCTTCAAGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTCCACCGTTCCCGCCTCGATCGCGACGATCGCCCGGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTCCGGCCGGGCCTCACCTTGCCCTGCGCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCACGCGTGCCGATATGACCGGTTCCGCTCT
GTCTCCCCCGCCTACGCGGGGATGAACCT	TTTTGACAGCGAGGAGACTACTATCATGACAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCAAGTGACTGATCGACTTGAGCCTTATCAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GTCATAGATTGCGCGCCCCTCTTTGCGTCATG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTTTCATTATCATCGTCGACGCAGCTCATGA
GTCTCCCCCGCCTACGCGGGGATGAACCG

>NC_015259|2|2|3059917-3061785|CRISPRCasFinder
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACCTTGAAGGTCGAAAGGCCCTGGACGAACGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTACCCGCATACATGCCGCAACTCTTCAAGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATCACTGGTTCCCGCTTTCCAGTTTAACAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	TGGACTCAATCCCGGATCCACGCTCCGCCGTG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTAAGGGACGTCGGCGCGGTCTCATCACAGTC
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACGGACGTGTCGCGGAGGCCAGGGCAAAAGCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCCGCCCCGCCTGCCTCGACCCTCGCGGCAT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGATCATGGCCGTTGCCCTTGATGGTAATAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATCACCAAGGGGTCGCTGGTCGCGTGCGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTTGCGCGTAGCTATTTGGTACTTGCCCTTTT
GTCTCCCCCGCCTACGCGGGGATGAACCC	CCGCGCCCGAGGCAACGCCCCAATCGCCCCCG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGCCGGCGACGGGATTGAAGCCAGGTGGGGAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATAGACGCATGGGACAAACTGGACGACAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGTCGCGGCACGTGATACCTGCCGAACGGACG
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTGCCGGCGCCAGGCTTATCGGCGCCAACCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTGCTGTATGCCAGCTTGTATAGATCCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGGACGACGGGGTATTTGACCCGGTCGAGTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGCCAAGCCGGAAGTAAGGGAAATCAGAGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGTTGAATAATGCACCGATCCAAGTGCACGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	AAGCCCGGCGGCTCCATCGCCGGGCTTTCGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTTTACCGGCTCGATTTCGACGCGGACGTTTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CATTGCTCTCGACCTCGCTTATCGCTTCAAGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTCCACCGTTCCCGCCTCGATCGCGACGATCGCCCGGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTCCGGCCGGGCCTCACCTTGCCCTGCGCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCACGCGTGCCGATATGACCGGTTCCGCTCT
GTCTCCCCCGCCTACGCGGGGATGAACCT	TTTTGACAGCGAGGAGACTACTATCATGACAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCAAGTGACTGATCGACTTGAGCCTTATCAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GTCATAGATTGCGCGCCCCTCTTTGCGTCATG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTTTCATTATCATCGTCGACGCAGCTCATGA
GTCTCCCCCGCCTACGCGGGGATGAACCG	TGTTTGTAGGAGGGGGCGGCCCGCACGCTTAC
GTCTCCCCCGCCTGCGCGGGGATGAATGC

>NC_015259|2|1|3059917-3061785|CRT
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACCTTGAAGGTCGAAAGGCCCTGGACGAACGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTACCCGCATACATGCCGCAACTCTTCAAGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATCACTGGTTCCCGCTTTCCAGTTTAACAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	TGGACTCAATCCCGGATCCACGCTCCGCCGTG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTAAGGGACGTCGGCGCGGTCTCATCACAGTC
GTCTCCCCCGCCTACGCGGGGATGAACCC	ACGGACGTGTCGCGGAGGCCAGGGCAAAAGCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCCGCCCCGCCTGCCTCGACCCTCGCGGCAT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGATCATGGCCGTTGCCCTTGATGGTAATAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATCACCAAGGGGTCGCTGGTCGCGTGCGC
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTTGCGCGTAGCTATTTGGTACTTGCCCTTTT
GTCTCCCCCGCCTACGCGGGGATGAACCC	CCGCGCCCGAGGCAACGCCCCAATCGCCCCCG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGCCGGCGACGGGATTGAAGCCAGGTGGGGAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TCGATAGACGCATGGGACAAACTGGACGACAG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGTCGCGGCACGTGATACCTGCCGAACGGACG
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTGCCGGCGCCAGGCTTATCGGCGCCAACCT
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTGCTGTATGCCAGCTTGTATAGATCCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGGACGACGGGGTATTTGACCCGGTCGAGTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GGGCCAAGCCGGAAGTAAGGGAAATCAGAGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GAGTTGAATAATGCACCGATCCAAGTGCACGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	AAGCCCGGCGGCTCCATCGCCGGGCTTTCGCC
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTTTACCGGCTCGATTTCGACGCGGACGTTTA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CATTGCTCTCGACCTCGCTTATCGCTTCAAGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GATTTCCACCGTTCCCGCCTCGATCGCGACGATCGCCCGGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	CTTCCGGCCGGGCCTCACCTTGCCCTGCGCGG
GTCTCCCCCGCCTACGCGGGGATGAACCC	TTCACGCGTGCCGATATGACCGGTTCCGCTCT
GTCTCCCCCGCCTACGCGGGGATGAACCT	TTTTGACAGCGAGGAGACTACTATCATGACAC
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCAAGTGACTGATCGACTTGAGCCTTATCAGA
GTCTCCCCCGCCTACGCGGGGATGAACCC	GTCATAGATTGCGCGCCCCTCTTTGCGTCATG
GTCTCCCCCGCCTACGCGGGGATGAACCC	GCTTTCATTATCATCGTCGACGCAGCTCATGA
GTCTCCCCCGCCTACGCGGGGATGAACCG	TGTTTGTAGGAGGGGGCGGCCCGCACGCTTAC
GTCTCCCCCGCCTGCGCGGGGATGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015259.1\|WP_013653586.1\|3066340_3067588_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NC_015259.1\|WP_013653578.1\|3055872_3057075_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_015259.1\|WP_013653592.1\|3073798_3074473_-\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735
NC_015259.1\|WP_013650724.1\|3048848_3050345_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015259.1\|WP_013653579.1\|3057078_3057816_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_015259.1\|WP_158306638.1\|3053647_3055282_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_015259.1\|WP_049792673.1\|3059523_3059868_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|378244
NC_015259.1\|WP_083812097.1\|3047314_3047944_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270232
NC_015259.1\|WP_013653588.1\|3068959_3069829_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238636
NC_015259.1\|WP_013653590.1\|3071780_3072701_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270287
NC_015259.1\|WP_013653591.1\|3072738_3073773_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NC_015259.1\|WP_148259458.1\|3067600_3068902_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
NC_015259.1\|WP_013653589.1\|3069797_3071726_-\|TRAP-transporter-fused-permease-subunit	unknown	unknown	gnl\|CDD\|273983
NC_015259.1\|WP_013653584.1\|3062879_3064214_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_015259.1\|WP_158306639.1\|3055287_3055821_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0196_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_015259.1\|WP_013653581.1\|3058568_3059552_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_015259.1\|WP_013653583.1\|3061904_3062735_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_015259.1\|WP_158306637.1\|3050616_3053247_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_015259.1\|WP_013653580.1\|3057812_3058559_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_015259.1\|WP_148259317.1\|3064210_3066289_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969

Protein	Function_ID	Function_description	E-value
NC_015259.1\|WP_013653586.1\|3066340_3067588_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.64282e-30
NC_015259.1\|WP_013653578.1\|3055872_3057075_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.90129e-106
NC_015259.1\|WP_013653592.1\|3073798_3074473_-\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	1.12475e-148
NC_015259.1\|WP_013650724.1\|3048848_3050345_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.27683e-58
NC_015259.1\|WP_013653579.1\|3057078_3057816_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.46021e-41
NC_015259.1\|WP_158306638.1\|3053647_3055282_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.04168e-21
NC_015259.1\|WP_049792673.1\|3059523_3059868_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.94887e-28
NC_015259.1\|WP_083812097.1\|3047314_3047944_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|270232	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily. This family includes alkylphosphonate binding domain PhnD. These domains are found in PhnD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.01913e-36
NC_015259.1\|WP_013653588.1\|3068959_3069829_-\|amidohydrolase-family-protein	gnl\|CDD\|238636	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.	3.98819e-93
NC_015259.1\|WP_013653590.1\|3071780_3072701_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270287	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	6.955e-112
NC_015259.1\|WP_013653591.1\|3072738_3073773_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NC_015259.1\|WP_148259458.1\|3067600_3068902_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.76136e-47
NC_015259.1\|WP_013653589.1\|3069797_3071726_-\|TRAP-transporter-fused-permease-subunit	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	6.46622e-154
NC_015259.1\|WP_013653584.1\|3062879_3064214_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.1136e-112
NC_015259.1\|WP_158306639.1\|3055287_3055821_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.35699e-10
NC_015259.1\|WP_013653581.1\|3058568_3059552_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.45788e-99
NC_015259.1\|WP_013653583.1\|3061904_3062735_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	4.00317e-30
NC_015259.1\|WP_158306637.1\|3050616_3053247_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.37361e-68
NC_015259.1\|WP_013653580.1\|3057812_3058559_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.40835e-30
NC_015259.1\|WP_148259317.1\|3064210_3066289_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0

>NC_015259.1|WP_049792673.1|3059523_3059868_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPMTLVVTRDVPPRYRGFLASVMPEVAPGVYVMPKLSKGVRERIWTVLSDWWDAMPGGSILMSWKDESAPGGLGLQALGLPPVELADLDGLLVVRRAATDSDGPSQEVASSHRS
>NC_015259.1|WP_013653581.1|3058568_3059552_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLLGRLGLETARLPHADRHGLILLDRGALTVEDGCLRFASAGGGAVARGQYTIPHQSISLVLLGPGSTVSHDALRLLARHGAGLAAVGDDGVRLYTAPPLMPDFSNLARRQVTLWADENRGRLDVARRMYALRLGEVLPHRDITVLRGIEGARVKTLYANLAQRYGIPWNGRRYDRSNPSAADLPNQALNHAASAVEAAAAIAVTATATLPQIGFIHEDSGQSFVLDVADLYRDTVTVPCAFRAAAAARKTPQDSIERLTRRITGEALRKQAVIAAMIDRIKALFETPTQPEPERPRARKKAAADITKLAQDTAQGDGHADDAGGDA
>NC_015259.1|WP_013653580.1|3057812_3058559_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLKLMSFRPDMHRLLALAARERLLPAGGDLGYALHAVFAASFADRAPKPFRFLAPGDPGGGPAGRLFAYSACSLDDLRAQATAFADPAFANVLRLEEAEAKAMPTDFPTGTRLGFSLRLRPVQRTGASPDGLEKARERDVYDGPGEGEARGAAARAHAYAAWLERQFNRSNAATLEDWHIEALKQTRLRARDRGAGTSTPRDVSGPDATYSGVLRVTDPEAFAALLARGIGRFRAFGFGMLLLKPPG
>NC_015259.1|WP_013653579.1|3057078_3057816_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MPHFLLLRLEAPLVAFGDIMVDAKGPVSDLPSASMLTGLLGNALGYRREERTRLQRLQDRIVHAARLDRSGRRFTEFQTARLGKDDQGWTTRGRPEGRAGGDGSYEGPHLRYREHDCDVSALVALCLRPHDEAPDLEDLAVALQQPARPLFIGRKPCLPSSQIFAGITEAPDHLAALTSVGLASARTRAPRRILVDLPRCATPPDGFRTVHCSDSRDWIAGVHTGDSLRWHGLVPLERFASETPQ
>NC_015259.1|WP_013653578.1|3055872_3057075_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTQPRFIQFHSLVSYPAVLLNRDDAGLAKRISYGGSVRTRISSQCLKRHWRTAEDEWSLANTGLDLSVRSREIFEYEIGPRVLEALPDADPQAVKAAGAVLSRAVYGQKADDVRKRQALLLGWPELRFLTGEVVALLRDHPTANAVTAAAEARFLGKDARANFAALRETAGNLAAGLEAALFGRMVTSDFSANTDAAIHVAHAFTVHEQESETDYFTVVDDLKRQAANEDAGSGGIFDTELTSGLFYEYVVVDVPLLVSNITGAPVADWSRSDLDRSLPAKVVEHLIHLIATISPGAKKGSTAPYAHASTLLVEAGTSQPRSLAKAFEAPVRAGRGESLGSRAEKALFECLDRFDAIYCKREVRRFASYDGRPGSALADGPHTLQDLGLWLRSSIQAAEA
>NC_015259.1|WP_158306639.1|3055287_3055821_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MPQTAAQKAGGKAEEAPRRNRFQILAQVIGAPDFDIGDRAALRRTNPDLLPGLPVFHRLLARINPSVNEQDAAVWGAILHVVALTAPNGHSLPAGEALCKAGLSESRFARLMAARNDALLDQVTIVARRLSASQMPIDWSHIAKLLLADHHGDREDAQRQRFRIAKDFYHELEKVDP
>NC_015259.1|WP_158306638.1|3053647_3055282_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MLTDAVLTGRQAADLTKVRLTLPELLAGLVRQDIADYPRLRPHQRHVWHALLVQLAGLALAKAGDTALPDDAARWRIVLRDLTPDHADDAPWRLVTPPEQSAFLQAPVPGGDLSAFRPVETPGGLDMLIMSKNHDLKASAMPADDPELWLYALVSLQTQEGFLGAGNFGISRMNGGFASRPALSVGPGDSVSARFRRDLRLALDLHDRWSEEYGYRSQGGLGLVWLEPWDGMRSLDIARLDLFYIEICRRIRLVRTDTGLRALAAGSKVPRIESKALNGVTGDLWTSVVDEKGKRKAFTLDARGWSYQQMVRLLFPAVRRASEEITPAPMQSEAPFDETTGLSVLARAVVRGQGKTEGYHERRIPVSRTLRLGFGKTAASEPAAQAAHERVRDAGTFQSKVVFPAVLAVFTAAPRTGAGERARDDDTAKSRAGAVAARLDALIDPLFFEDLETELAVLGDRPAMERARLRWLRDRLLPFARTVLDEAFAAAPDAAARHWRVRVRARDLLAMCFRKQFGARFEAAGMPLTAPETDQDGEHPGRTV
>NC_015259.1|WP_158306637.1|3050616_3053247_+|CRISPR-associated-helicase-Cas3'
MSDNPIFSQSGLPLGKWDEEGNRQPLVEHSRDVAAVFSALARLPGIRKRLTRLAATAEFLDIWIERLAWFVFLHDLGKANWGFQARIESTACAVGHIAPIAGAYDAIVDQLDPVRMASWGDETMLGDWFHAVLSHHGKPWPQNPGPNKTACYKKYWQVRGDYDPIAEVQRLREAADQFHGTAFRQCSPELPFTSPLIHALAGLVMLADWIASSDWRASPDAAHLSTWAQRICCGIGFDPEPWRRTIVPDDFQAAFGFTPRTSQLDFVNAPGSLAILEAETGSGKTEAALWRFVERFRAGAVDGLYFALPSRTAAVQVHGRVERMIQALWPNDSPPCILAVPGYLDDASGGGLPVAADMLDCPEEDTRAPTPWASEHPKRYFTGMIGVGTLDQALLSVLRVKHAHMRSAALMRHMLVIDEVHASDAYMSRLTEILLRDHLAAGGEAALLSATLGGHARARYAAVGRLFNLNDLHLDDLSRSVTVPYPALTVQTSTGSETMALDPSGRSKRVSMAVECLIDDAHRIAGIAFAAAREGAKVLVVRNTVQGAVDVQMALENLAGQGAPELFRVSGDPARHPPVATLHHGRFAREDRRLLDAAVERAVGKARPPGGLVLVGTQTLEQSLDIDADYLITDLCPMDVLLQRLGRLHRHETETDGSLRLRPDAFRDARALVLAPAEALAGLLTTVPRTRRNRHGLGPRKDADGVPRGVYPDLLALEATRRLCLDQPVWTIPEMNRILVERALHPEAHDEILMTMPAEQREAWERHWRDIDGVRFGDTMTARGAALDRRKPFMDLANALLPQEHLATRLGDEGYILKLPEATLGPFGTPISRIVIPAWWLAGIPDPSKISISICFENNNSNLPNAIPYSRLGLQR
>NC_015259.1|WP_013650724.1|3048848_3050345_-|IS21-family-transposase
MDLYLKVRLAVSEGMSRRQAAKHFNISRDSVSKMLSYSTPPGYRRQAPVRRPKLDAFVSTIDHWLDEDLKVPRKQRHTAKRVFDRLRAECGFTGGYTIIKDYMREREQRRQEVFVPLSHPPGHAQADFGEAVVVIGGVEQKAHFFVLDLPHSDACYVRAYPAAVSEAWIDGHVHAFAFFGAVPQSIVYDNDRCLVSKILADGTRKRTVLFSGFLSHYLIRDRYGRPGKGNDKGSVEGLVGYARRNFMVPIPRFATWDEFNAWLEEQCRKRQRDRLRGESETIAERLQRDLAAMRPLPASPFEACDQASGRVSSQALVRYRTNDYSVPVAFGHQDVWIRGYVDEVVIGCRGEIIARHPRSWEREDVVFDPLHYLPLIEQKINALDQAAPLQGWDLPEAFATLRRLMEARMAKHGRREYVQVLRLLESFELADLHVAVKQALQIGAIGFDAVKHLLLCQVERRPPRLDLSIYPYLPRATVEKTSAKAYMRLLSTHAGDAA
>NC_015259.1|WP_083812097.1|3047314_3047944_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MVLTGPAEYVVIKQLTDAQIVVGWQRPDYFAQVVTLADGKIKTVEDLRGKIVTFGSVGSTSQHLGPAQALADLGLTLGTDYDGQIVSRNTAVEALIRGDIAAIGMNFTHMQKIRETYPDVAFTVIARGRDLPNDILVAKRNLDPEIVDQIRKVFVTRGADLMAAVLKGDDNQKFKGGHFLTEIDDSDYDYVRSMYRTIGVDTFGQFVGD
>NC_015259.1|WP_013653583.1|3061904_3062735_+|FkbM-family-methyltransferase
MTSYVFRVHGLTLAGLSPEDSYVRRLRAQRKPEPQLLTFLRAQYDTDGDYVFADIGANIGYTALLMARLFPRATVHAFEPGPTVFPLLRHNVEGARVVPVNAAVSSRSGTVAFVENSAYGHMVPQAAGGSTPMVSMADYAARTGIARFDFVKIDVEGFELDVFRGLGGLTDTVLFEFNTFALDCHSRVNPLTLLEELSADWDLYEFMRTDRLETIDDFPAVLHRTMIDRRTVSNLVAVRKGRALRQDLIDPTIRGRQILDLGRVVKRFRARLEAPR
>NC_015259.1|WP_013653584.1|3062879_3064214_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSLSPAVHDLDGRLGASIRRHLLAALALAAALVGGLGGWAAVTEIAGAVVATGTLVVETNVKAVQHQEGGIVRQIAVRDGDLVEAGDLLLRLDDTVTRANLAIVTRQLADLAAQEARLVAERDGRAEIVFGARPQGLQAADLAADLADVERSQVELLEARRASRTGRKKQLEEQIRQFDKQVEGLEAQRLAKGREIELIDDELADLIGLLDKKLVARNRVTALQRDKARLEGDYGSLIAQIAQSREAISERRLLILQIDDEARAEVLEQLQDVRGRLARLEEQRIAAEDQLARIDIRAPRAGYVHQLAVHTIGGVVGAGETVMLIVPREDLLVVEAKVQPVDIDQLAPGRDATVRFPSFDQRTTPELAARLVTVAADLTVDPATGAGYYAARLAIPDAELARLDGQTLVPGMPVEIFIRTRERTVLSYLVKPVADQIAHALRER
>NC_015259.1|WP_148259317.1|3064210_3066289_-|type-I-secretion-system-permease/ATPase
MNRSAGRPRRRTVPSCPGPHDPYTAPGPASTAAERGLNVKRRHCQAAERACQGPRLRVPSQHESAAAGTGAVSPRDRRAGRRTCQETGSVADIAPERPTSASGSPAPSRGGALAPVAAAFGSVRGALVATGAVSLLINLLMLTGPLFMLQVYDRVLVSGSVPTLVVLGTLAFALYVFYGLLEGLRGRILVRIAQRVDARLSGLAYGISMAVPVLHGSRGARLRPVQDLDTVRQFLAGPGPAAIYDVPWLPFYLAIVFLFHSLLGFVALAGAVLISVLIILNEVLSRAPVAQAARVAGQRTAAVETGRRNAEAARAMGMGPALSERWSRDNAAYLARQQEAADRTGAFATAIKTLRFVLQSAILGVGAWLAIRQEISPGVMIAASIMTSRALAPVEQAIAHWRGFLAFRQGLARLREVLGPAQGDGALIDLPLPRERLSLDAVTCAPAGVAKPVVQGVTLQLAAGDGLGIIGPSGSGKSTLARAIVGAVAPLRGVVRFDGADLGQWPEGRRGRFIGYLPQDLQLFDGTIADNIARFEPAARSEAVIEAARLADVHDLVVTLPDGYNTVIGSEGMVLSAGQRQRIALARALYGTPFLVVLDEPNSNLDAEGDAALSRAIKAVRDRGSIVVVIAHRPSAIATVDRVLCLKEGQVVACGPKDEVLRKVVAPVAAPVATPTTAPTTGPGAAAGSTRA
>NC_015259.1|WP_013653586.1|3066340_3067588_+|MFS-transporter
MAIAAGQTRVVLALGTAQTLAWGSTFYLPAILAVPMARDLGVSSGFVFAAFSAALVVSAFVGPGAGRRIDRLGGRDVLALANLVFAAGLALLGTAQGPILLVGAWLVIGFGMAIGLYEAAFATLAGIYGTKARGAITGITLLAGFASTVCWPISAVLEAEFGWRTACFAWAAAHLLVGLPLNRLLVPAGRHALPDKAAETGAPAPDALAGPPARAFTGAFTGAFTEAFAGLRDRAMILLAVVFTATWFISTAMAAHLPRLLQDAGATPAAAIAAAALVGPAQVAGRLVEFGLLRRVHPLVSARLAALAHPLGAAALLVFGAPAAAVFALVHGAGNGILTIAKGTLPLSLFGAAGYGARQGVLMVPTRLGQAAAPFAFALLMERFGATSLLVSAVIGLCGVAALLALGTTQAGRSD
>NC_015259.1|WP_148259458.1|3067600_3068902_-|LysR-family-transcriptional-regulator
MPNRFEDSDIDLHEDIADAGRCGTGYPNLRHVRLLEAAVRERSLTRAAETVHISQPAASQALARLNAQFGGPLLERQGNGVVPTPRGEVVVARAARALGYIREAAQRIARRCRSEGSSTPDLLETHATISHLRAASLVAHTGSFSAAARALGQSEPSVHRAAREIEGILGVTLFDEAYRRLQTTPAGRTLATAASLVLKELDNAFEEVREFEGDYAGRIVIGTLPLVRSRIVPQAVVEIARRHPRARIRILDGSYEALAQGVVVGSIDMIVGALRQELEHEDLTQKRLFDDSLSIVARAGHPLAGTTTLTDADLVRYPWVLPRRATPSRAVFEALASRFPREAPQAGFVETGSLVALRGILTQSDFLTIVSPRQIWYELRAGQLCVLPIDLGDTRRPIGLTLRADWRPTALQADFLAALDHAVGDLSPGAGGN
>NC_015259.1|WP_013653588.1|3068959_3069829_-|amidohydrolase-family-protein
MTTDPQTWHPDPSKPAYVPPAGAVDAHCHVFGPADRFPYAPERKYTPVDAPKEMLFALRDHLGFSRNVIVQASCHGKDNAALVDALESEPERTRGVAVVRPDISDQELRQMDAAGVRGIRFNFVRRLVDPGPRDVFSTLARRVADLGWHVVVYFEAPDLEDLTAFLKALPVTVVIDHMGRPDIAAGVESPGFRAFRTLMEDDKFWVKVGCPERLTVAGPPYDDVAPFARTLVESCPDRVLWGTDWPHPNMKSHIPDDGLLVDRIPVIAPTEDLQRRLLVDNPQRLYWAR
>NC_015259.1|WP_013653589.1|3069797_3071726_-|TRAP-transporter-fused-permease-subunit
MATIWKLLPEGHLGRLEHRLLCIVVSLLAVAATFLVVHSAWFGSLTALLLRSAFFSLMTSAGLFLVAARMHWRAWRLALYVLAILVLIPGPYLQANFMAIIRSGGIAGEMDVRLFVLSTVAVFVLARYTIGWSMVVIGVAALAYAFWGNHIPGVYGHAGYSLGRVTSNLFLSTEGLFGLPMGVAAQYILLFSLLGALLLRSGLGQVFVDLAHALTGRIQGGPALTAVVSSTMFSSINGSAVAGVVTTGTFTIPLMKRTGYRPKVAGAIEAAASSAGQIMPPVMGAAAFLMAEVTRTPYATIAAAALIPALLYVFALLVAVRLEAGKFNMSRSDGSDVPTVRSVLAGRGYMLLPLVALVGFLIYGYTPAKAAVLCIAATLAISLLSAKTRMGPAVLVEVMVETLRNVLPVVAAVAVAGILIGVLTLTGMALKVSAMILDFGGDSLFLVLVLTMIASFVLGLGMPTSAAYLLLAILIAPALVKFGLPVIAAHMFIFYYGLLSAITPPVALAAYAGASIAGAQPNETAVEAMRLGFVKVVAPFLFVYSPGLLLIGTPLDIVMATIGAVGATFAAGTAMVGWCIRPMSLAGRLAYWAAAVLFTYSLVIDQAAVLSFAAKAAGLVLIAIPLWNSWRTHDNRSADLAS
>NC_015259.1|WP_013653590.1|3071780_3072701_-|TAXI-family-TRAP-transporter-solute-binding-subunit
MMKRLITATALTVLAALPASADTRVSIGTGGTGGVFYAIGAGMADILSKKLDGVTANAEVTGASVENVRRVSAGEMTLGFSSASTLYEGKNGQGPFEAAQNVAAVAYLYPAILQIAATKASGADGVEDLGDLRVSVGPPGSNSAVLAERLMTAYGVFDLGKVSFLSYTEATDAIKNGNLDASIILAGTPASAFIELTTTMDMTIVPVDKDKVSGLLQEYPFYEVIDIPGGVYAGADQPVPALGDPAILFTAADADPELVYQITKTLFDNLADVGAVHPAAKDIQRATATNVPVPLHEGAKRYFDEN
>NC_015259.1|WP_013653591.1|3072738_3073773_-|4-oxalomesaconate-tautomerase
MWMRGGTSKGGYFLADDLPSDPAERDRVLLRIMGSPDPRQIDGLGGADSLTSKVAVVRTSTRPGIDVDYLFLQVFVDQAIVTDAQNCGNILAGVGPFAIERGLVPAQDGETDVAIFMENTGQKAIATIRTPGGRVSYAGEARIDGVPGTSAPVAIVFEDTAGSSCGALLPTGNAIDVIDGVEVTLIDNGMPCVILDAADFGVAGTESPKELDANADLKARIESIRLKAGPLMNLGDVRDSSVPKMTLVSPARNGGCVSTRTFIPHKCHAAIGVLGAVSVGTACLLAEGPAARIAAVPGGNPKTLSIEHPTGEFSVIARLDDDGGVRSTGVLRTARKLFDGTVFA
>NC_015259.1|WP_013653592.1|3073798_3074473_-|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MGGVVVQSIERADPAVIAGLAECGVATVHEAQGRKGLMASYMRPIFSGAQLAASAVTISAPPGDNWMVHVAIEQVKAGDILVLAPTSPCEDGYFGDLLATSMQARGGRGLIIDAGVRDVRDLTAMNFPVWSKAVFAQGTVKETLGSVNVPVVCAGAYVNPGDVIVADDDGVCVVRRDEAEAVLEKARARVAAEEDKRRRLAAGELGLDIYKMRERLAEKGLKYV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015259_2	2.9\|3060434\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060434-3060465	32	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	61458-61489	5	0.844
NC_015259_2	2.15\|3060800\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060800-3060831	32	NZ_CP044424	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN1, complete sequence	2390-2421	5	0.844
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	268967-268998	6	0.812
NC_015259_2	2.8\|3060373\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060373-3060404	32	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	389462-389493	7	0.781
NC_015259_2	2.13\|3060678\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060678-3060709	32	MT708550	Achromobacter phage Mano, complete genome	1883-1914	7	0.781
NC_015259_2	2.15\|3060800\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060800-3060831	32	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	882866-882897	7	0.781
NC_015259_2	2.15\|3060800\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060800-3060831	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	270333-270364	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1413519-1413550	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	19409-19440	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	517166-517197	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	333034-333065	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	334754-334785	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1374281-1374312	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	400572-400603	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	965145-965176	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1359104-1359135	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1391369-1391400	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1584956-1584987	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	2003075-2003106	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	70668-70699	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1604486-1604517	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	15929-15960	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1302303-1302334	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1234109-1234140	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	515266-515297	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1286842-1286873	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1567997-1568028	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1402151-1402182	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	542757-542788	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	330297-330328	7	0.781
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	333035-333066	7	0.781
NC_015259_2	2.29\|3061664\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061664-3061695	32	NZ_CP015601	Pseudomonas antarctica strain PAMC 27494 plasmid pP27494_1, complete sequence	20932-20963	7	0.781
NC_015259_2	2.1\|3059946\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3059946-3059977	32	NZ_CP053715	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed8, complete sequence	20890-20921	8	0.75
NC_015259_2	2.2\|3060007\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060007-3060038	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1325756-1325787	8	0.75
NC_015259_2	2.2\|3060007\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060007-3060038	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1032012-1032043	8	0.75
NC_015259_2	2.7\|3060312\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060312-3060343	32	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	266515-266546	8	0.75
NC_015259_2	2.7\|3060312\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060312-3060343	32	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	249558-249589	8	0.75
NC_015259_2	2.7\|3060312\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060312-3060343	32	NZ_CP044080	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence	206659-206690	8	0.75
NC_015259_2	2.8\|3060373\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060373-3060404	32	NC_031255	Gordonia phage Schwabeltier, complete genome	34029-34060	8	0.75
NC_015259_2	2.9\|3060434\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060434-3060465	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	123253-123284	8	0.75
NC_015259_2	2.15\|3060800\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060800-3060831	32	MG696115	Plesiomonas phage phiP4-7, complete genome	21886-21917	8	0.75
NC_015259_2	2.15\|3060800\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060800-3060831	32	NC_004808	Streptomyces rochei plasmid pSLA2-L DNA, complete sequence	113173-113204	8	0.75
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	129604-129635	8	0.75
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	MH744418	Streptomyces phage JustBecause, complete genome	149600-149631	8	0.75
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	MT310898	Streptomyces phage Kela, complete genome	151204-151235	8	0.75
NC_015259_2	2.29\|3061664\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061664-3061695	32	KX119205	Helicobacter phage DeM53M, complete genome	27932-27963	8	0.75
NC_015259_2	2.5\|3060190\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060190-3060221	32	NZ_CP036330	Klebsiella pneumoniae strain BA28434 plasmid punnamed_1_VBA28434	4409-4440	9	0.719
NC_015259_2	2.5\|3060190\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060190-3060221	32	CP052354	Klebsiella pneumoniae strain D16KP0146 plasmid unnamed	40088-40119	9	0.719
NC_015259_2	2.5\|3060190\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060190-3060221	32	CP052395	Klebsiella pneumoniae strain C17KP0040 plasmid unnamed	40093-40124	9	0.719
NC_015259_2	2.5\|3060190\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060190-3060221	32	KY271402	Klebsiella phage 48ST307, complete genome	40864-40895	9	0.719
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	88973-89004	9	0.719
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	418526-418557	9	0.719
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	537688-537719	9	0.719
NC_015259_2	2.24\|3061359\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061359-3061390	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	760676-760707	9	0.719
NC_015259_2	2.29\|3061664\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061664-3061695	32	NC_018696	Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence	334758-334789	9	0.719
NC_015259_2	2.1\|3059946\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3059946-3059977	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	44989-45020	10	0.688
NC_015259_2	2.8\|3060373\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060373-3060404	32	KU998235	Gordonia phage Bowser, complete genome	33910-33941	10	0.688
NC_015259_2	2.12\|3060617\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060617-3060648	32	KU160673	Arthrobacter phage Wilde, complete genome	55133-55164	10	0.688
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	280715-280746	10	0.688
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1812526-1812557	10	0.688
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	29896-29927	10	0.688
NC_015259_2	2.21\|3061166\|33\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061166-3061198	33	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	469140-469172	10	0.697
NC_015259_2	2.21\|3061166\|33\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061166-3061198	33	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	578079-578111	10	0.697
NC_015259_2	2.29\|3061664\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061664-3061695	32	NZ_CP014329	Corynebacterium glutamicum strain USDA-ARS-USMARC-56828 plasmid p48A, complete sequence	36566-36597	10	0.688
NC_015259_2	2.5\|3060190\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3060190-3060221	32	NZ_CP019438	Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence	162578-162609	11	0.656
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	313433-313464	11	0.656
NC_015259_2	2.20\|3061105\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061105-3061136	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	536892-536923	11	0.656
NC_015259_2	2.25\|3061420\|32\|NC_015259\|PILER-CR,CRISPRCasFinder,CRT	3061420-3061451	32	KU682439	Stenotrophomonas phage vB_SmaS-DLP_6, complete genome	12160-12191	11	0.656

1. spacer 2.9|3060434|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 5, identity: 0.844

tcgatcaccaaggggtcgctgg---tcgcgtgcgc	CRISPR spacer
tcgatcacgaaggggtcgctggtgatcgcgtc---	Protospacer
******** *************   ******

2. spacer 2.15|3060800|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044424 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN1, complete sequence) position: , mismatch: 5, identity: 0.844

cttgccggcgccaggcttatcggcgccaacct	CRISPR spacer
ttcgtcggcgccaggctgatcggcgcgaacct	Protospacer
.*.*.************ ******** *****

3. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 6, identity: 0.812

aagcccggcggctccatcgccgg-gctttcgcc	CRISPR spacer
aaccccggcggctccagcgccggagcgggcgc-	Protospacer
** ************* ****** **   ***

4. spacer 2.8|3060373|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcatg---gccgttgcccttgatggtaatac	CRISPR spacer
---tccatgggcgcccttgcccttgaaggtaatac	Protospacer
    .****   *** ********** ********

5. spacer 2.13|3060678|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 7, identity: 0.781

tcgata-gacgcatgggacaaactggacgacag	CRISPR spacer
-caacaggacgtatgggacgaactggacgacct	Protospacer
 *.*.* ****.*******.***********

6. spacer 2.15|3060800|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

cttgccggcgccaggcttatcggcgccaacct	CRISPR spacer
cttgccggcgccggccttatcggcatctgcgt	Protospacer
************.* *********..* .* *

7. spacer 2.15|3060800|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.781

cttgccggcgccaggcttat----cggcgccaacct	CRISPR spacer
gttgcgggcgccgggcttatcggccggcgcca----	Protospacer
 **** ******.*******    ********

8. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

9. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctg-cgcgg	CRISPR spacer
gaaccagccgggcctgaccttgccctgtcgcc-	Protospacer
   **.********* *********** ***

10. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttctggccgggcctgaccttgccgatgtcgg	Protospacer
****.********** ********     ***

11. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

12. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

13. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

14. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

15. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

16. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

17. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

18. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

19. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

20. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

21. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

22. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

23. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

24. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

25. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

26. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

27. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

28. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

29. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

30. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

31. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cttccggtcgggcctcacctggcggcgcggcg	Protospacer
*******.************ **  .***  *

32. spacer 2.29|3061664|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015601 (Pseudomonas antarctica strain PAMC 27494 plasmid pP27494_1, complete sequence) position: , mismatch: 7, identity: 0.781

gctttcatt---atcatcgtcgacgcagctcatga	CRISPR spacer
---tttactcacatcatcgtcgacgaagcgcatga	Protospacer
   **.*.*   ************* *** *****

33. spacer 2.1|3059946|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053715 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed8, complete sequence) position: , mismatch: 8, identity: 0.75

accttgaaggtcgaaaggccctggacgaacga	CRISPR spacer
ggcttgcaggtcgaaatgccctggatgctgga	Protospacer
. **** ********* ********.*   **

34. spacer 2.2|3060007|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

gctacccg---catacatgccgcaactcttcaagc	CRISPR spacer
---ttccgaaacagacatgccgcatctcttcaaga	Protospacer
    .***   ** ********** *********

35. spacer 2.2|3060007|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 8, identity: 0.75

gctacccgcatacatgccgcaactcttcaagc	CRISPR spacer
ggcgcaggaatacgtgacgcaactcttcaagc	Protospacer
* ..*  * ****.** ***************

36. spacer 2.7|3060312|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 8, identity: 0.75

ttccgccccgcctgcctcgaccctcgcggcat-----	CRISPR spacer
ttccgcgccgcctgccacgaccc-----ggatttcca	Protospacer
****** ********* ******     * **

37. spacer 2.7|3060312|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ttccgccccgcctgcctcgaccctcgcggcat-----	CRISPR spacer
ttccgcgccgcctgccacgaccc-----ggatttcca	Protospacer
****** ********* ******     * **

38. spacer 2.7|3060312|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044080 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ttccgccccgcctgcctcgaccctcgcggcat-----	CRISPR spacer
ttccgcgccgcctgccacgaccc-----ggatttcca	Protospacer
****** ********* ******     * **

39. spacer 2.8|3060373|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_031255 (Gordonia phage Schwabeltier, complete genome) position: , mismatch: 8, identity: 0.75

gggatcatggccgttgcccttgatg-gtaatac	CRISPR spacer
tcgatcatggccgtggcccttcatgagttgga-	Protospacer
  ************ ****** *** ** . *

40. spacer 2.9|3060434|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcaccaaggggtcgctggtcgcgtgcgc	CRISPR spacer
tggatcgccaagggggcgctggtcgtgcccta	Protospacer
* ****.******** *********.*. *

41. spacer 2.15|3060800|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to MG696115 (Plesiomonas phage phiP4-7, complete genome) position: , mismatch: 8, identity: 0.75

cttgccggcgccaggcttatcggcgccaacct	CRISPR spacer
tgaagcggcgccagcctgatcggcgccaacat	Protospacer
.  . ********* ** ************ *

42. spacer 2.15|3060800|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 8, identity: 0.75

cttgccggcgccaggcttatcggcgccaacct	CRISPR spacer
cacaccggcgccgggcgtatcggcgccccctt	Protospacer
* ..********.*** **********  *.*

43. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 8, identity: 0.75

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
aagcccggcggccccatcaccggttcggcggc	Protospacer
************.*****.**** ..  ** *

44. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.75

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cacccggccgggccgcatcttgccctcccggc	Protospacer
* .*********** **.******** *  *

45. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.75

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
cacccggccgggccgcatcttgccctcccggc	Protospacer
* .*********** **.******** *  *

46. spacer 2.29|3061664|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to KX119205 (Helicobacter phage DeM53M, complete genome) position: , mismatch: 8, identity: 0.75

gctttcattatcatcgtcgacgcagctcatga	CRISPR spacer
gctttcgttatcatcgccgacgctactattag	Protospacer
******.*********.****** .**  *..

47. spacer 2.5|3060190|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036330 (Klebsiella pneumoniae strain BA28434 plasmid punnamed_1_VBA28434) position: , mismatch: 9, identity: 0.719

ttaagggacgtcggcgcggtctcatcacagtc	CRISPR spacer
gtcagggacgtcagcgcggtcgcatcggcttt	Protospacer
 * *********.******** ****.   *.

48. spacer 2.5|3060190|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to CP052354 (Klebsiella pneumoniae strain D16KP0146 plasmid unnamed) position: , mismatch: 9, identity: 0.719

ttaagggacgtcggcgcggtctcatcacagtc	CRISPR spacer
gtcagggacgtcagcgcggtcgcatcggcttt	Protospacer
 * *********.******** ****.   *.

49. spacer 2.5|3060190|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to CP052395 (Klebsiella pneumoniae strain C17KP0040 plasmid unnamed) position: , mismatch: 9, identity: 0.719

ttaagggacgtcggcgcggtctcatcacagtc	CRISPR spacer
gtcagggacgtcagcgcggtcgcatcggcttt	Protospacer
 * *********.******** ****.   *.

50. spacer 2.5|3060190|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to KY271402 (Klebsiella phage 48ST307, complete genome) position: , mismatch: 9, identity: 0.719

ttaagggacgtcggcgcggtctcatcacagtc	CRISPR spacer
gtcagggacgtcagcgcggtcgcatcggcttt	Protospacer
 * *********.******** ****.   *.

51. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
gcgctcggcggcttcatcgccgggctggagag	Protospacer
. **.********.************   *

52. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
ggccccggcggctccatcggccggctgctgca	Protospacer
.. **************** * **** ..**

53. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
ggccccggcggctccatcggccggctgctgca	Protospacer
.. **************** * **** ..**

54. spacer 2.24|3061359|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.719

cttccggccgggcctcaccttgccctgcgcgg	CRISPR spacer
ctttcggccgagcctcaccttgctgttcagtt	Protospacer
***.******.************. * *.

55. spacer 2.29|3061664|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_018696 (Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence) position: , mismatch: 9, identity: 0.719

gctttcattatcatcgtcgacgcagctcatga	CRISPR spacer
ggcattattaccatcgtcgacgcagcacaatc	Protospacer
* . *.****.*************** **

56. spacer 2.1|3059946|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

accttgaaggtcgaaaggccctggacgaacga	CRISPR spacer
cggaagaaggtcgagaggctctggacgagctg	Protospacer
     *********.****.********.* .

57. spacer 2.8|3060373|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to KU998235 (Gordonia phage Bowser, complete genome) position: , mismatch: 10, identity: 0.688

gggatcatggccgttgcccttgatggtaatac	CRISPR spacer
tcgatcatggccgtggcccttcatgagtggat	Protospacer
  ************ ****** ***.  . *.

58. spacer 2.12|3060617|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to KU160673 (Arthrobacter phage Wilde, complete genome) position: , mismatch: 10, identity: 0.688

ggccggcgacgggattgaagccaggtggggag	CRISPR spacer
ccccggcgacgggattgtatccaggctcgtcc	Protospacer
  *************** * *****.  *

59. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 10, identity: 0.688

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
gcgctcggcggcttcatcgccgggctggaaag	Protospacer
. **.********.************   .

60. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.688

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
gtgcccggcggctccatcggcaggccgaccgt	Protospacer
. ***************** *.***.  *  .

61. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 10, identity: 0.688

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
tggcccggcggcgccaccgccgggcgggaaca	Protospacer
 .********** ***.********    .*

62. spacer 2.21|3061166|33|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.697

cttttaccggctcgatttcgacgcggacgttta	CRISPR spacer
cgcgtaccggctcgatttcgccgccgacaacct	Protospacer
* . **************** *** ***. ..

63. spacer 2.21|3061166|33|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.697

cttttaccggctcgatttcgacgcggacgttta	CRISPR spacer
cgcgtaccggctcgatttcgccgccgacaacct	Protospacer
* . **************** *** ***. ..

64. spacer 2.29|3061664|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014329 (Corynebacterium glutamicum strain USDA-ARS-USMARC-56828 plasmid p48A, complete sequence) position: , mismatch: 10, identity: 0.688

gctttcattatcatcgtcgacgcagctcatga	CRISPR spacer
aacgttattgtcatcgtcgacgaagctcaccg	Protospacer
. . *.***.************ ******. .

65. spacer 2.5|3060190|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019438 (Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ttaagggacgtcggcgcggtctcatcacagtc	CRISPR spacer
cgggccgacgtcggcgcggtctcgtcgcaaaa	Protospacer
. ..  *****************.**.**.

66. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 11, identity: 0.656

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
gcgcccggcggttccgtcgccgggcgaggagg	Protospacer
. *********.***.*********    .

67. spacer 2.20|3061105|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

aagcccggcggctccatcgccgggctttcgcc	CRISPR spacer
ccgccaggcggctccgtcgccgggcgcgaagg	Protospacer
  *** *********.********* .  .

68. spacer 2.25|3061420|32|NC_015259|PILER-CR,CRISPRCasFinder,CRT matches to KU682439 (Stenotrophomonas phage vB_SmaS-DLP_6, complete genome) position: , mismatch: 11, identity: 0.656

ttcacgcgtgccgatatgaccggttccgctct	CRISPR spacer
cctgacggtccagatatgaccggttccgctac	Protospacer
....   ** * ****************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500161 : 553360

uncultured_marine_virus(20.0%)

integrase,transposase

attL 497432:497448|attR 548682:548698

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
497432:497448	attL	NA	NA	NA	NA
WP_193371730.1\|500161_501104_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	3.1e-17	28.3
WP_148259231.1\|501543_501846_-	hypothetical protein	NA	NA	NA	NA
WP_013651245.1\|502089_502311_-	hypothetical protein	NA	NA	NA	NA
WP_013651246.1\|502401_504426_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013651247.1\|504959_505904_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.7e-60	43.0
WP_013651248.1\|506183_507821_-	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_148259232.1\|508014_508275_+	hypothetical protein	NA	NA	NA	NA
WP_083812026.1\|508463_508778_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_148259233.1\|508910_509552_-	hypothetical protein	NA	NA	NA	NA
WP_083812027.1\|510044_511226_-	flagellin	NA	NA	NA	NA
WP_083812028.1\|511348_511882_+	carbon storage regulator	NA	NA	NA	NA
WP_148259234.1\|512176_512446_+	hypothetical protein	NA	NA	NA	NA
WP_148259235.1\|514127_514319_+	hypothetical protein	NA	NA	NA	NA
WP_148259236.1\|514691_515762_-	hypothetical protein	F2Y2D2	Organic_Lake_phycodnavirus	7.0e-10	40.9
WP_083812029.1\|516190_517012_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_083812030.1\|516991_517138_-\|transposase	transposase	NA	NA	NA	NA
WP_158306619.1\|517134_517281_-\|transposase	transposase	NA	NA	NA	NA
WP_085997569.1\|517317_517617_-	hypothetical protein	NA	NA	NA	NA
WP_158306620.1\|518215_518374_+	hypothetical protein	NA	NA	NA	NA
WP_148259237.1\|518726_519230_+	hypothetical protein	NA	NA	NA	NA
WP_013651254.1\|519668_519974_+	hypothetical protein	NA	NA	NA	NA
WP_013651255.1\|519977_520208_+	hypothetical protein	NA	NA	NA	NA
WP_148259379.1\|520207_520567_+	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	7.8e-22	52.5
WP_013651257.1\|520623_522465_+	ParB/RepB/Spo0J family partition protein	A0A0F7L836	uncultured_marine_virus	6.4e-19	28.4
WP_148259238.1\|522543_522729_+	hypothetical protein	NA	NA	NA	NA
WP_013651259.1\|523200_523494_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_013651260.1\|523562_524069_+	hypothetical protein	NA	NA	NA	NA
WP_013651261.1\|524105_524663_-	hypothetical protein	NA	NA	NA	NA
WP_013651262.1\|524902_525268_+	hypothetical protein	A0A0F7L9F6	uncultured_marine_virus	1.3e-19	41.3
WP_158306621.1\|525542_525707_-	hypothetical protein	NA	NA	NA	NA
WP_148259380.1\|526928_527372_+	hypothetical protein	NA	NA	NA	NA
WP_041375331.1\|527361_529059_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_013651266.1\|529141_529756_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_041375332.1\|529807_530146_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_013651268.1\|530133_530385_-	MazE family transcriptional regulator	NA	NA	NA	NA
WP_013651269.1\|530434_530824_-	hypothetical protein	NA	NA	NA	NA
WP_083812031.1\|530839_532435_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_083812152.1\|532796_533531_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_193371731.1\|533633_534245_+	conjugal transfer protein TraI	NA	NA	NA	NA
WP_013651272.1\|534241_534460_+	hypothetical protein	NA	NA	NA	NA
WP_041375772.1\|534504_535095_+	recombinase family protein	A0JC18	Ralstonia_phage	2.9e-37	50.0
WP_013651273.1\|535069_537838_-	DEAD/DEAH box helicase family protein	A0A1B1IUI1	uncultured_Mediterranean_phage	2.1e-45	26.9
WP_041375333.1\|537840_538341_-	hypothetical protein	NA	NA	NA	NA
WP_013651274.1\|538343_541541_-	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_013651275.1\|541554_542544_-	hypothetical protein	NA	NA	NA	NA
WP_041375773.1\|542543_545294_-	DUF499 domain-containing protein	NA	NA	NA	NA
WP_148259382.1\|545306_546164_-	WYL domain-containing protein	NA	NA	NA	NA
WP_083812032.1\|546422_546935_-	hypothetical protein	NA	NA	NA	NA
WP_013651278.1\|547069_547291_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013651279.1\|547313_548525_-\|integrase	tyrosine-type recombinase/integrase	A0A088CD23	Shigella_phage	1.4e-22	32.3
WP_013651280.1\|549163_550243_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
548682:548698	attR	NA	NA	NA	NA
WP_158306622.1\|550503_552204_+	hypothetical protein	NA	NA	NA	NA
WP_085997570.1\|552230_553360_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.2e-93	64.3

DBSCAN-SWA_2

648896 : 755338

108

Rhodobacter_phage(10.71%)

integrase,protease,transposase

attL 637393:637440|attR 716913:716929

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
637393:637440	attL	NA	NA	NA	NA
WP_013651363.1\|648896_649481_+\|integrase	site-specific integrase	NA	NA	NA	NA
637393:637440	attL	NA	NA	NA	NA
WP_148259242.1\|649477_649861_-	hypothetical protein	NA	NA	NA	NA
WP_013651364.1\|649820_650294_-	universal stress protein	NA	NA	NA	NA
WP_013651365.1\|650440_650935_+	transcriptional regulator SlyA	NA	NA	NA	NA
WP_041375341.1\|650919_652110_+	HlyD family secretion protein	NA	NA	NA	NA
WP_013651367.1\|652102_653734_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_193371721.1\|653747_654125_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013651369.1\|654293_655154_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013651371.1\|656395_656788_+	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	2.7e-23	54.8
WP_013651372.1\|656803_657118_+	hypothetical protein	NA	NA	NA	NA
WP_013651373.1\|657182_658982_+	ParB/RepB/Spo0J family partition protein	A0A0F7L836	uncultured_marine_virus	1.4e-21	28.7
WP_013651375.1\|659364_660543_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_013651376.1\|660539_661946_-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	NA	NA	NA	NA
WP_013651377.1\|661953_663735_-	polyhydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_013651378.1\|663731_664322_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013651379.1\|664466_664811_+	phasin family protein	NA	NA	NA	NA
WP_013651380.1\|665170_665428_-	hypothetical protein	NA	NA	NA	NA
WP_148259243.1\|665814_666000_+	hypothetical protein	NA	NA	NA	NA
WP_013651382.1\|666373_666625_+	hypothetical protein	NA	NA	NA	NA
WP_041375792.1\|667535_667832_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_013651384.1\|667898_668408_+	hypothetical protein	NA	NA	NA	NA
WP_013651385.1\|668689_669055_+	hypothetical protein	NA	NA	NA	NA
WP_148259384.1\|669491_669794_+	hypothetical protein	NA	NA	NA	NA
WP_085997572.1\|670099_671288_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.3e-48	41.2
WP_013651389.1\|671304_671664_-	hypothetical protein	NA	NA	NA	NA
WP_013651390.1\|671684_672371_-	hypothetical protein	NA	NA	NA	NA
WP_041375345.1\|672854_673049_+	hypothetical protein	NA	NA	NA	NA
WP_083812154.1\|673625_674105_+	hypothetical protein	NA	NA	NA	NA
WP_013651392.1\|674094_675786_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_041375347.1\|675792_676164_-	hypothetical protein	NA	NA	NA	NA
WP_049792542.1\|676179_677775_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013651394.1\|678053_678281_-	hypothetical protein	NA	NA	NA	NA
WP_049792543.1\|678282_678936_-	ParA family protein	A0A0K1Y6H3	Rhodobacter_phage	7.3e-42	44.7
WP_013650723.1\|679812_680583_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.9e-41	43.0
WP_013651399.1\|682122_682332_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049792544.1\|682428_683049_+	hypothetical protein	NA	NA	NA	NA
WP_169313689.1\|683279_683864_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013651402.1\|684997_685570_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	8.9e-44	55.2
WP_148259244.1\|685561_685816_-	hypothetical protein	NA	NA	NA	NA
WP_013651403.1\|686032_686977_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_013651404.1\|686986_688105_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	7.1e-21	27.2
WP_013651405.1\|688101_688593_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_013651406.1\|688707_689199_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_013651407.1\|689219_689618_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_013651408.1\|689632_690058_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_013651409.1\|690260_690692_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_013651410.1\|690706_692539_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	4.0e-106	43.6
WP_013651411.1\|692602_695509_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.5e-123	35.7
WP_013651412.1\|695586_696726_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_193371732.1\|696776_697301_+	ETC complex I subunit	NA	NA	NA	NA
WP_013651414.1\|697334_698087_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013651415.1\|698077_698920_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1V0SAV4	Catovirus	3.5e-12	28.9
WP_041375351.1\|698972_699395_+	thioredoxin TrxC	V5L6J2	Insectomime_virus	7.3e-11	33.3
WP_013651417.1\|699443_700622_+	cation:proton antiporter	NA	NA	NA	NA
WP_013651418.1\|700863_701085_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013651419.1\|701138_702269_-\|integrase	site-specific integrase	G8C7K6	Escherichia_phage	4.3e-26	35.9
WP_083812156.1\|702837_703770_+	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	8.8e-25	31.0
702451:702498	attR	NA	NA	NA	NA
WP_013651421.1\|704234_704465_-	hypothetical protein	NA	NA	NA	NA
702451:702498	attR	NA	NA	NA	NA
WP_013651422.1\|704555_706571_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013651423.1\|707111_708053_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.1e-62	44.7
WP_013651424.1\|708232_709432_+	ATP-binding protein	NA	NA	NA	NA
WP_013651425.1\|709435_711970_+	S8 family peptidase	NA	NA	NA	NA
WP_013651426.1\|712178_712721_-	hypothetical protein	NA	NA	NA	NA
WP_041375353.1\|712724_713180_-	hypothetical protein	NA	NA	NA	NA
WP_013651427.1\|713389_713974_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_148259245.1\|714117_714549_-	hypothetical protein	NA	NA	NA	NA
WP_013651429.1\|714655_715702_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.9e-55	37.2
WP_041375355.1\|716329_719614_+	inverse autotransporter beta-barrel domain-containing protein	A0A2D1GMQ7	Marinobacter_phage	5.3e-08	26.7
WP_148259246.1\|719668_720419_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.2e-25	43.9
WP_013651433.1\|721047_721440_+	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	1.0e-19	49.6
WP_041375358.1\|723413_723599_+	hypothetical protein	NA	NA	NA	NA
WP_013651435.1\|724080_724377_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_013651436.1\|724444_724924_+	hypothetical protein	NA	NA	NA	NA
WP_013651437.1\|725242_725809_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_013651438.1\|726145_726511_+	hypothetical protein	NA	NA	NA	NA
WP_041375359.1\|727026_727245_+	hypothetical protein	NA	NA	NA	NA
WP_085997565.1\|728096_729045_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	2.0e-08	24.1
WP_148259247.1\|730227_730437_+	hypothetical protein	NA	NA	NA	NA
WP_148259387.1\|731068_731545_+	hypothetical protein	NA	NA	NA	NA
WP_148259386.1\|731627_733232_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_013651444.1\|733315_733933_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_148259248.1\|733974_734307_-	hypothetical protein	NA	NA	NA	NA
WP_013651446.1\|734385_734772_+	hypothetical protein	NA	NA	NA	NA
WP_041375362.1\|734794_735133_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_013651448.1\|735120_735372_-	MazE family transcriptional regulator	NA	NA	NA	NA
WP_013651449.1\|735451_735811_-	hypothetical protein	NA	NA	NA	NA
WP_148259388.1\|735826_737293_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_041375363.1\|737696_737924_-	hypothetical protein	NA	NA	NA	NA
WP_041375803.1\|737925_738498_-	ParA family protein	A0A219YB79	Aeromonas_phage	3.0e-15	33.7
WP_085997565.1\|738555_739504_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	2.0e-08	24.1
WP_193371722.1\|739476_739635_-	hypothetical protein	A0A0K1Y6H3	Rhodobacter_phage	4.5e-06	60.5
WP_013651454.1\|739810_740503_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_148259389.1\|740608_741220_+	conjugal transfer protein TraI	NA	NA	NA	NA
WP_148259249.1\|741216_741402_+	hypothetical protein	NA	NA	NA	NA
WP_013651456.1\|741516_742083_+	recombinase family protein	Q1MVM2	Enterobacteria_phage	1.3e-42	53.6
WP_013651429.1\|742102_743149_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.9e-55	37.2
WP_193371723.1\|743201_744473_-	AAA family ATPase	NA	NA	NA	NA
WP_013651458.1\|744450_745485_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	5.0e-138	68.9
WP_013651459.1\|745550_746435_-	AAA family ATPase	NA	NA	NA	NA
WP_013651460.1\|746454_746697_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_013651461.1\|746798_747677_+	WYL domain-containing protein	NA	NA	NA	NA
WP_013651462.1\|747732_749271_+	SAM-dependent DNA methyltransferase	J7I0U9	Acinetobacter_phage	1.5e-32	32.9
WP_013651463.1\|749267_750440_+	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	2.7e-10	30.8
WP_158306625.1\|750445_750607_+	hypothetical protein	NA	NA	NA	NA
WP_013651464.1\|750674_751754_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_083812039.1\|751898_753026_+	abortive infection family protein	NA	NA	NA	NA
WP_013650723.1\|753074_753845_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.9e-41	43.0
WP_013650724.1\|753841_755338_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1757249 : 1804435

Rhodobacter_phage(36.84%)

capsid,tRNA,transposase,portal,protease,integrase,head,tail

attL 1779302:1779317|attR 1807518:1807533

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013652391.1\|1757249_1759214_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.3e-122	37.8
WP_049792567.1\|1759529_1760570_-	hypothetical protein	NA	NA	NA	NA
WP_013652393.1\|1760791_1761385_+	nitroreductase	NA	NA	NA	NA
WP_013652394.1\|1761389_1761992_+	flavin reductase family protein	NA	NA	NA	NA
WP_013652395.1\|1762143_1763133_+	lytic transglycosylase	A0A1Y0T0A2	Pseudomonas_phage	4.1e-20	35.4
WP_013652396.1\|1763246_1764389_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_013652397.1\|1764421_1764958_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_013652398.1\|1765136_1765919_-	NAD kinase	NA	NA	NA	NA
WP_148259427.1\|1766353_1766938_-	hypothetical protein	NA	NA	NA	NA
WP_193371725.1\|1767091_1767706_-	hypothetical protein	G8GWB1	Rhodobacter_phage	1.3e-16	64.6
WP_013652401.1\|1767908_1768202_+	helix-turn-helix domain-containing protein	A0A219VHB8	Ochrobactrum_phage	2.9e-22	57.1
WP_013652402.1\|1768201_1768513_+	hypothetical protein	NA	NA	NA	NA
WP_041375444.1\|1768512_1768722_+	hypothetical protein	NA	NA	NA	NA
WP_013652403.1\|1768847_1769687_+	ParB N-terminal domain-containing protein	R9U496	Rhizobium_phage	2.0e-44	41.5
WP_013652404.1\|1769679_1770138_+	hypothetical protein	NA	NA	NA	NA
WP_013652405.1\|1770134_1770353_+	hypothetical protein	NA	NA	NA	NA
WP_041375445.1\|1770349_1772515_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	3.0e-140	42.8
WP_013652407.1\|1772586_1773351_+	ATP-binding protein	M4SPU5	Rhodobacter_phage	5.7e-46	41.6
WP_013652408.1\|1773350_1773992_+	hypothetical protein	NA	NA	NA	NA
WP_013652409.1\|1773988_1774369_+	hypothetical protein	M4STC0	Rhodobacter_phage	2.9e-19	42.6
WP_013652410.1\|1774355_1774628_+	hypothetical protein	NA	NA	NA	NA
WP_013652411.1\|1774624_1775017_+	hypothetical protein	NA	NA	NA	NA
WP_083812165.1\|1775082_1775673_+	DUF3164 family protein	M4STB6	Rhodobacter_phage	9.4e-73	67.7
WP_013652413.1\|1775672_1775975_+	hypothetical protein	NA	NA	NA	NA
WP_013652414.1\|1775971_1776262_+	hypothetical protein	NA	NA	NA	NA
WP_013652416.1\|1776818_1777451_+	regulatory protein GemA	A0A219VHC6	Ochrobactrum_phage	1.2e-36	43.3
WP_148259429.1\|1777459_1777822_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148259430.1\|1778554_1779487_+	TraR/DksA C4-type zinc finger protein	B5TA71	Burkholderia_phage	3.7e-07	46.0
1779302:1779317	attL	NA	NA	NA	NA
WP_013652421.1\|1779486_1779813_+	DUF2730 family protein	NA	NA	NA	NA
WP_013652422.1\|1779809_1780115_+	hypothetical protein	NA	NA	NA	NA
WP_013652423.1\|1780125_1780689_+	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	4.4e-11	34.3
WP_013652424.1\|1780689_1782102_+	hypothetical protein	Q5ZQY5	Pseudomonas_phage	5.9e-198	75.5
WP_148259273.1\|1782094_1784179_+\|portal	phage portal protein	A0A1B1IWP5	uncultured_Mediterranean_phage	1.1e-96	45.5
WP_041375970.1\|1784300_1785062_+\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_013652427.1\|1785425_1786721_+\|capsid	phage major capsid protein	A0A222ZEN6	Arthrobacter_phage	3.6e-32	34.4
WP_013652428.1\|1786944_1787493_+	hypothetical protein	NA	NA	NA	NA
WP_013652429.1\|1787504_1788008_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_041375448.1\|1788124_1788382_+	hypothetical protein	NA	NA	NA	NA
WP_013652431.1\|1788391_1788958_+	hypothetical protein	NA	NA	NA	NA
WP_013652432.1\|1789084_1789429_+	hypothetical protein	NA	NA	NA	NA
WP_013652433.1\|1789459_1789726_+	hypothetical protein	NA	NA	NA	NA
WP_013652434.1\|1789730_1790864_+	hypothetical protein	NA	NA	NA	NA
WP_013652435.1\|1790860_1791301_+	hypothetical protein	NA	NA	NA	NA
WP_013652436.1\|1791391_1791700_+	hypothetical protein	NA	NA	NA	NA
WP_013652437.1\|1792066_1792474_+	hypothetical protein	NA	NA	NA	NA
WP_013652438.1\|1792635_1793061_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013652439.1\|1793107_1793713_+	hypothetical protein	NA	NA	NA	NA
WP_013652440.1\|1793722_1793953_+	hypothetical protein	NA	NA	NA	NA
WP_013652441.1\|1793919_1794396_+	hypothetical protein	NA	NA	NA	NA
WP_013652442.1\|1794392_1794695_+	hypothetical protein	NA	NA	NA	NA
WP_013652443.1\|1794687_1796610_+	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	1.3e-30	31.9
WP_013652444.1\|1796606_1797029_+	hypothetical protein	NA	NA	NA	NA
WP_013652445.1\|1797056_1797590_+	hypothetical protein	M4ST87	Rhodobacter_phage	1.1e-43	53.4
WP_013652446.1\|1797586_1798021_+	C40 family peptidase	G8GWF9	Rhodobacter_phage	4.1e-25	47.3
WP_013652447.1\|1798017_1800996_+\|tail	tail fiber protein	A0A1B0T6I4	Pelagibaca_phage	8.1e-197	43.8
WP_013652448.1\|1801006_1802806_+	hypothetical protein	NA	NA	NA	NA
WP_013652449.1\|1803265_1804435_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
1807518:1807533	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2309748 : 2323787

uncultured_Mediterranean_phage(70.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013652931.1\|2309748_2311377_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.8e-151	50.9
WP_013652932.1\|2311532_2312375_+	VOC family protein	NA	NA	NA	NA
WP_148259290.1\|2312405_2312867_+	hypothetical protein	NA	NA	NA	NA
WP_013652933.1\|2313117_2314125_-	enterochelin esterase	NA	NA	NA	NA
WP_013652934.1\|2314269_2315295_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	4.5e-22	46.5
WP_013652935.1\|2315297_2316101_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.4e-31	32.2
WP_013652936.1\|2316090_2316798_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.6e-45	50.9
WP_013652937.1\|2316794_2317928_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.9e-13	26.6
WP_013652938.1\|2318039_2318279_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.4e-11	67.3
WP_013652939.1\|2318317_2318755_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_013652940.1\|2318751_2319549_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.4e-55	49.8
WP_013652941.1\|2319631_2320912_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-95	45.9
WP_013652942.1\|2320915_2321674_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_013652943.1\|2321714_2322395_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.9e-24	44.9
WP_013652944.1\|2322506_2323787_+	M23 family metallopeptidase	S6B1Q4	Bacillus_phage	1.6e-08	34.4

DBSCAN-SWA_5

3145500 : 3161452

Dinoroseobacter_phage(25.0%)

capsid,portal,protease,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013653653.1\|3145500_3146376_-	peptidoglycan-binding protein	A0A1B1UZH2	Plesiomonas_phage	7.8e-07	38.5
WP_041375559.1\|3146420_3147143_-	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	4.7e-42	42.4
WP_013653655.1\|3147135_3151005_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LLC1	Rhodobacter_phage	4.2e-246	41.5
WP_013653656.1\|3150992_3151454_-	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.4e-28	48.5
WP_013653657.1\|3151443_3152337_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	7.1e-48	37.3
WP_013653658.1\|3152355_3152991_-	DUF2460 domain-containing protein	A0A1V0DYB0	Dinoroseobacter_phage	8.1e-30	41.8
WP_013653659.1\|3153087_3153342_+	YdcH family protein	NA	NA	NA	NA
WP_013653660.1\|3153364_3153952_-\|tail	phage tail tape measure protein	A0A1B2AP03	Escherichia_phage	2.9e-05	41.9
WP_148259461.1\|3153955_3154177_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_049792596.1\|3154173_3154557_-	gene transfer agent family protein	NA	NA	NA	NA
WP_013653662.1\|3154713_3155127_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_013653663.1\|3155150_3155567_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_083812100.1\|3155563_3155995_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013653664.1\|3155885_3156443_-\|head,tail	phage head-tail connector protein	A0A141GEW4	Brucella_phage	1.2e-13	32.1
WP_013653665.1\|3156531_3157830_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	4.2e-81	43.0
WP_013653666.1\|3157826_3158279_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.3e-25	49.2
WP_041375560.1\|3158555_3158750_-	hypothetical protein	NA	NA	NA	NA
WP_041375561.1\|3158746_3159943_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	3.2e-72	40.5
WP_013653668.1\|3160210_3161452_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.2e-80	44.0

DBSCAN-SWA_6

4060454 : 4070103

Acidithiobacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013654478.1\|4060454_4063670_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.8e-67	27.4
WP_013654479.1\|4063812_4064544_-	DUF3800 domain-containing protein	A0A1W6JTE9	Pseudomonas_phage	1.0e-52	42.6
WP_083812128.1\|4064536_4065760_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013654481.1\|4065752_4067270_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.5e-79	36.7
WP_013654482.1\|4067269_4067860_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_041375641.1\|4067942_4068329_-	bacteriophage-like protein	K4HZX2	Acidithiobacillus_phage	4.6e-12	36.0
WP_013654484.1\|4068325_4069651_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.4e-121	52.7
WP_013654485.1\|4069647_4070103_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	4.4e-22	45.0

DBSCAN-SWA_7

4077244 : 4085342

uncultured_Caudovirales_phage(50.0%)

transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013654494.1\|4077244_4078609_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.6e-75	39.1
WP_083812129.1\|4078610_4079708_+	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	1.2e-33	49.4
WP_013654496.1\|4079717_4079933_+	hypothetical protein	K4I1E3	Acidithiobacillus_phage	7.0e-18	69.6
WP_013654497.1\|4079977_4080175_+	hypothetical protein	NA	NA	NA	NA
WP_013654498.1\|4080223_4080796_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	1.9e-14	37.2
WP_013654499.1\|4080886_4081111_-	hypothetical protein	NA	NA	NA	NA
WP_013654500.1\|4081570_4082608_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013654501.1\|4082797_4083394_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.3e-26	43.0
WP_049792617.1\|4083341_4085342_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	1.0e-219	61.2

DBSCAN-SWA_8

4092001 : 4107918

Paracoccus_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013654511.1\|4092001_4092421_+	hypothetical protein	G8DH50	Emiliania_huxleyi_virus	1.2e-34	55.0
WP_013654512.1\|4092560_4093499_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	2.1e-98	56.7
WP_013654513.1\|4093501_4093939_+	hypothetical protein	NA	NA	NA	NA
WP_013654514.1\|4093947_4094166_+	hypothetical protein	NA	NA	NA	NA
WP_013654515.1\|4094158_4096594_+	hypothetical protein	A0A1J0GUY9	Halomonas_phage	1.8e-21	36.6
WP_013654516.1\|4096597_4097224_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.5e-60	57.8
WP_013654517.1\|4097220_4097571_+	hypothetical protein	NA	NA	NA	NA
WP_013654518.1\|4097700_4098345_+	lysozyme	F8TV87	EBPR_siphovirus	1.4e-37	50.6
WP_041375644.1\|4098341_4098551_+	hypothetical protein	NA	NA	NA	NA
WP_013654519.1\|4098547_4099432_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	4.8e-65	45.9
WP_013654520.1\|4099428_4099863_+	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.0e-28	45.2
WP_013654521.1\|4099872_4103916_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	3.5e-259	40.7
WP_013654522.1\|4103927_4105850_+	DUF2793 domain-containing protein	A0A0K1LM04	Rhodobacter_phage	3.8e-30	29.7
WP_148259347.1\|4106367_4107918_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	7.6e-13	46.1

DBSCAN-SWA_9

4284705 : 4432299

156

Ochrobactrum_phage(23.38%)

capsid,plate,tRNA,transposase,portal,terminase,integrase,head,tail

attL 4301025:4301043|attR 4345801:4345819

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148259354.1\|4284705_4285713_-	late control protein	A0A219VHA9	Ochrobactrum_phage	1.1e-94	52.9
WP_013654700.1\|4285709_4285970_-\|tail	tail protein X	NA	NA	NA	NA
WP_013654701.1\|4285966_4286398_-\|tail	phage tail protein	A0A219VHA8	Ochrobactrum_phage	3.3e-43	58.7
WP_013654702.1\|4286398_4288882_-\|tail	phage tail tape measure protein	H8YJ81	Vibrio_phage	1.4e-32	29.2
WP_148259355.1\|4288894_4289020_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_013654703.1\|4289016_4289469_-	hypothetical protein	NA	NA	NA	NA
WP_013654704.1\|4289494_4290013_-\|tail	phage major tail tube protein	A0A219VHB2	Ochrobactrum_phage	2.0e-55	59.9
WP_013654705.1\|4290051_4291314_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A219VHA7	Ochrobactrum_phage	2.6e-168	69.2
WP_013654706.1\|4291489_4291999_-	hypothetical protein	A0A1Y0SVH3	Sinorhizobium_phage	8.0e-12	44.2
WP_013654707.1\|4291995_4293069_-	hypothetical protein	NA	NA	NA	NA
WP_013654708.1\|4293080_4296293_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	9.6e-196	39.5
WP_013654709.1\|4296300_4297455_-	phage protein gp27	K4I1F8	Acidithiobacillus_phage	3.4e-26	37.9
WP_013654710.1\|4297451_4298300_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.2e-39	38.9
WP_013654711.1\|4298296_4298704_-\|plate	baseplate assembly protein	A0A219VH96	Ochrobactrum_phage	1.6e-39	60.3
WP_041375658.1\|4298708_4298900_-	hypothetical protein	A0A219VHA0	Ochrobactrum_phage	4.2e-06	63.4
WP_013654712.1\|4298913_4299480_-	hypothetical protein	A0A219VHA3	Ochrobactrum_phage	8.0e-37	51.4
WP_013654713.1\|4299476_4300946_-	hypothetical protein	A0A219VH99	Ochrobactrum_phage	2.4e-32	45.1
WP_013654714.1\|4300942_4301422_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	5.5e-47	59.7
4301025:4301043	attL	NA	NA	NA	NA
WP_013654715.1\|4301418_4301835_-	DUF1320 family protein	NA	NA	NA	NA
WP_013654716.1\|4301856_4302126_-	hypothetical protein	NA	NA	NA	NA
WP_013654717.1\|4302203_4303103_-\|head	Mu-like prophage major head subunit gpT family protein	M4SRT6	Rhodobacter_phage	1.3e-73	47.5
WP_013654718.1\|4303139_4303541_-	hypothetical protein	A0A2P9JZJ1	Alteromonadaceae_phage	9.0e-27	51.1
WP_013654719.1\|4303590_4304604_-	Mu-like prophage I protein	A0A219VH76	Ochrobactrum_phage	1.0e-66	47.2
WP_013654720.1\|4304956_4306219_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	7.8e-109	63.9
WP_013654721.1\|4306208_4307771_-	DUF935 domain-containing protein	A0A219VH73	Ochrobactrum_phage	2.1e-151	53.6
WP_013654722.1\|4307767_4309438_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	3.1e-198	65.6
WP_013654723.1\|4309434_4310019_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	4.2e-57	60.8
WP_013654724.1\|4310021_4310318_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.3e-25	62.8
WP_013654725.1\|4310321_4310663_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	1.4e-12	38.3
WP_158306647.1\|4310659_4310797_-	hypothetical protein	NA	NA	NA	NA
WP_013654726.1\|4310801_4311194_-	hypothetical protein	NA	NA	NA	NA
WP_041375660.1\|4311190_4311391_-	hypothetical protein	NA	NA	NA	NA
WP_013654727.1\|4311387_4312329_-	peptidoglycan-binding protein	A0A0M5M782	Salmonella_phage	5.4e-06	35.3
WP_013654728.1\|4312419_4312812_-	hypothetical protein	A0A219VHE2	Ochrobactrum_phage	1.8e-24	51.2
WP_013654729.1\|4312816_4313464_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	1.4e-32	43.9
WP_013654731.1\|4313759_4314110_-	hypothetical protein	NA	NA	NA	NA
WP_013654732.1\|4314109_4314763_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	1.2e-73	64.7
WP_013654733.1\|4314764_4315166_-	hypothetical protein	NA	NA	NA	NA
WP_013654734.1\|4315162_4315423_-	hypothetical protein	NA	NA	NA	NA
WP_013654735.1\|4315412_4315799_-	transcriptional regulator	NA	NA	NA	NA
WP_013654736.1\|4315795_4316428_-	hypothetical protein	NA	NA	NA	NA
WP_013654737.1\|4316427_4317192_-	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	5.9e-43	42.9
WP_013654738.1\|4317271_4319464_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	9.1e-121	40.0
WP_013654739.1\|4319460_4319925_-	hypothetical protein	G8GWB9	Rhodobacter_phage	6.5e-37	55.9
WP_013654740.1\|4319928_4320792_-	ParB N-terminal domain-containing protein	G8GWB8	Rhodobacter_phage	6.9e-16	32.4
WP_148259356.1\|4320968_4321304_+	hypothetical protein	NA	NA	NA	NA
WP_013654741.1\|4321509_4321743_-	hypothetical protein	NA	NA	NA	NA
WP_041375662.1\|4321841_4322141_-	helix-turn-helix domain-containing protein	G8GWB2	Rhodobacter_phage	7.4e-10	44.4
WP_013654743.1\|4322289_4322814_+	helix-turn-helix transcriptional regulator	A0A219VHC1	Ochrobactrum_phage	1.8e-30	43.7
WP_013654744.1\|4323714_4325712_-	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.9e-82	34.3
WP_013654745.1\|4325713_4326676_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013654746.1\|4326792_4327353_+	hypothetical protein	NA	NA	NA	NA
WP_013654747.1\|4327595_4327829_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_013654748.1\|4327907_4329857_+	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-104	37.8
WP_041375664.1\|4330716_4331661_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_013654750.1\|4331641_4333849_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_013654751.1\|4333860_4334331_-	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_013654752.1\|4334369_4334744_-	hypothetical protein	NA	NA	NA	NA
WP_083812136.1\|4334924_4336274_-	ferredoxin reductase family protein	NA	NA	NA	NA
WP_013654754.1\|4336266_4336584_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_013654755.1\|4336729_4337389_+	response regulator transcription factor	NA	NA	NA	NA
WP_013654756.1\|4337385_4338744_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_013654757.1\|4338922_4339180_-	hypothetical protein	NA	NA	NA	NA
WP_013654758.1\|4339176_4339851_-	DUF882 domain-containing protein	A0A0K1LLY2	Rhodobacter_phage	4.0e-43	47.2
WP_013654759.1\|4339919_4340210_-	hypothetical protein	K4I011	Acidithiobacillus_phage	1.3e-14	50.6
WP_013654760.1\|4340233_4341514_-	hypothetical protein	V5XVY2	Staphylococcus_phage	6.0e-16	33.1
WP_013654761.1\|4341513_4345026_-\|tail	phage tail protein	Q5DN19	Alphaproteobacteria_virus	5.0e-214	41.0
WP_013654762.1\|4345032_4345482_-	C40 family peptidase	Q5DN20	Alphaproteobacteria_virus	8.0e-24	45.9
WP_013654763.1\|4345471_4347052_-	DUF2163 domain-containing protein	Q5DN21	Alphaproteobacteria_virus	6.6e-89	36.4
4345801:4345819	attR	NA	NA	NA	NA
WP_013654764.1\|4347048_4347651_-	DUF2460 domain-containing protein	A0A1W6DWM9	Sphingobium_phage	6.2e-48	47.7
WP_041375665.1\|4347662_4350167_-	potassium ABC transporter ATPase	A0A1J0GUY9	Halomonas_phage	5.6e-26	39.6
WP_013654766.1\|4350159_4350345_-	hypothetical protein	G8DH53	Emiliania_huxleyi_virus	2.0e-05	56.0
WP_013654767.1\|4350389_4350839_-	hypothetical protein	G8DH52	Emiliania_huxleyi_virus	4.9e-13	39.4
WP_013654768.1\|4350849_4352121_-	hypothetical protein	NA	NA	NA	NA
WP_013654769.1\|4352143_4352578_-	hypothetical protein	G8DH50	Emiliania_huxleyi_virus	8.3e-26	43.4
WP_013654770.1\|4352672_4353320_-	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	5.9e-36	45.0
WP_013654771.1\|4353316_4353631_-	hypothetical protein	NA	NA	NA	NA
WP_013654772.1\|4353633_4354656_-\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	1.2e-104	56.6
WP_013654773.1\|4354750_4355140_-\|head	head decoration protein	NA	NA	NA	NA
WP_013654774.1\|4355157_4356477_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.0e-66	45.7
WP_041375666.1\|4356484_4357960_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	2.3e-197	74.7
WP_041375667.1\|4357963_4358176_-	hypothetical protein	K4HZB1	Acidithiobacillus_phage	1.1e-07	48.6
WP_041375668.1\|4358180_4360157_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	7.3e-154	48.1
WP_013654777.1\|4360071_4360641_-\|terminase	terminase small subunit, Nu1	A0A2K9V2Q9	Faecalibacterium_phage	4.4e-11	34.0
WP_013654778.1\|4360788_4361010_+	hypothetical protein	NA	NA	NA	NA
WP_013654779.1\|4361112_4361658_+	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	4.4e-16	39.5
WP_013654780.1\|4361662_4361908_+	hypothetical protein	NA	NA	NA	NA
WP_041375669.1\|4361960_4362182_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.5e-15	63.8
WP_041375670.1\|4362178_4363501_-	ParB N-terminal domain-containing protein	K4HZA5	Acidithiobacillus_phage	2.8e-72	38.4
WP_013654783.1\|4363895_4364336_-	hypothetical protein	NA	NA	NA	NA
WP_013654784.1\|4364328_4364529_-	hypothetical protein	NA	NA	NA	NA
WP_013654785.1\|4364525_4364783_-	hypothetical protein	Q1A063	Mycobacterium_phage	5.1e-07	38.0
WP_148259494.1\|4364779_4365277_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	5.5e-50	62.4
WP_013654787.1\|4365426_4368354_-	toprim domain-containing protein	A0A1B0V000	Roseobacter_phage	4.7e-72	33.8
WP_013654788.1\|4368346_4369627_-	AAA family ATPase	A0A0F6SJ43	Sinorhizobium_phage	1.0e-71	40.4
WP_013654789.1\|4369623_4370394_-\|tRNA	isoleucyl-tRNA synthetase	K4HZA0	Acidithiobacillus_phage	2.0e-59	50.0
WP_013654790.1\|4370402_4370666_-	hypothetical protein	NA	NA	NA	NA
WP_013654791.1\|4370758_4370986_-	hypothetical protein	NA	NA	NA	NA
WP_013654792.1\|4370991_4371735_-	hypothetical protein	NA	NA	NA	NA
WP_013654793.1\|4371741_4372575_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	1.3e-67	49.6
WP_013654794.1\|4372574_4372874_-	hypothetical protein	NA	NA	NA	NA
WP_013654795.1\|4372870_4373365_-	hypothetical protein	NA	NA	NA	NA
WP_013654796.1\|4373364_4373706_-	hypothetical protein	NA	NA	NA	NA
WP_041375671.1\|4373740_4374322_-	hypothetical protein	NA	NA	NA	NA
WP_013654798.1\|4374445_4375381_-	hypothetical protein	NA	NA	NA	NA
WP_013654799.1\|4375340_4375940_-	hypothetical protein	NA	NA	NA	NA
WP_013650723.1\|4376092_4376863_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.9e-41	43.0
WP_013650724.1\|4376859_4378356_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013654800.1\|4378870_4380133_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_041375673.1\|4380129_4380900_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.7e-48	45.1
WP_013654802.1\|4381189_4382098_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_013654803.1\|4382370_4383027_-	OmpW family protein	NA	NA	NA	NA
WP_013654804.1\|4383125_4384331_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013654805.1\|4384431_4385337_-	VOC family protein	NA	NA	NA	NA
WP_013654806.1\|4385373_4385970_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_013654807.1\|4385966_4386962_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_013654809.1\|4388150_4388474_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_013654810.1\|4388668_4389874_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.3e-96	49.0
WP_013654812.1\|4392077_4392977_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_013654813.1\|4392973_4394206_-	CoA transferase	NA	NA	NA	NA
WP_013654814.1\|4394261_4396616_-	hypothetical protein	NA	NA	NA	NA
WP_041376357.1\|4396637_4397297_-	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_013654816.1\|4397305_4398001_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_013654817.1\|4398030_4399977_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_041375674.1\|4400067_4401054_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_041375675.1\|4401262_4402624_+	aromatic ring-hydroxylating dioxygenase subunit alpha	S4S2K9	Puniceispirillum_phage	1.8e-05	40.7
WP_013654821.1\|4402709_4403267_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_083812138.1\|4403278_4403584_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_013654823.1\|4403616_4404450_+	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	5.0e-11	29.1
WP_041375676.1\|4404605_4406057_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_013654825.1\|4406238_4407483_+	cytochrome P450	NA	NA	NA	NA
WP_013654826.1\|4407597_4408455_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_013654827.1\|4408507_4409032_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_013654828.1\|4409392_4409716_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_013654829.1\|4409766_4410825_+	gentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_013654830.1\|4410896_4411892_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_013654831.1\|4411888_4412485_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_013654832.1\|4412518_4413424_+	VOC family protein	NA	NA	NA	NA
WP_013654833.1\|4413493_4414699_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041375678.1\|4414761_4415418_+	OmpW family protein	NA	NA	NA	NA
WP_013654835.1\|4415476_4416076_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_013650727.1\|4416723_4417140_+\|transposase	transposase	NA	NA	NA	NA
WP_013650726.1\|4417139_4417493_+	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	8.2e-08	37.3
WP_013654839.1\|4417562_4419128_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.8e-84	35.8
WP_013654841.1\|4419783_4419999_-	hypothetical protein	NA	NA	NA	NA
WP_083812139.1\|4420002_4423095_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	8.7e-178	53.9
WP_013654843.1\|4423042_4423654_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.7e-24	40.5
WP_049792625.1\|4423739_4424069_+	hypothetical protein	A0A0K0PVN5	Roseobacter_phage	1.4e-12	51.5
WP_013654845.1\|4424164_4424752_+	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	6.4e-13	33.0
WP_013654846.1\|4424761_4425031_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	3.1e-15	64.4
WP_013654847.1\|4425027_4426017_-	DNA cytosine methyltransferase	D2XJU8	Escherichia_phage	1.5e-75	49.7
WP_013654848.1\|4426016_4427336_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	2.7e-75	39.1
WP_041376315.1\|4427652_4427853_-	hypothetical protein	NA	NA	NA	NA
WP_013654492.1\|4427858_4428287_-	hypothetical protein	NA	NA	NA	NA
WP_013654491.1\|4428283_4428811_-	hypothetical protein	NA	NA	NA	NA
WP_013654490.1\|4428807_4432299_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	4.8e-31	48.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015259

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection