CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017568	Staphylococcus pseudintermedius ED99, complete sequence	1 crisprs	WYL,RT,cas9,cas1,cas2,DEDDh,cas3,DinG,csa3	0	19	10	0

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CRISPR-Cas detection and classification

Crispr_ID: NC_017568_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017568_1

684166-685711

TypeII

Consensus_repeat	Method
TGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACT	PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CRISPRCasFinder
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CRT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	PILER-CR

23 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_017568_1

>merge|NC_017568|1|684166-685711|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTTTTAATCACTATACGATTATGAAAGCCTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGAACAGTTTGATTTACCTTATCGCTATATTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGTTTCTGTTTGTTACTTTTATTCTGTACGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGAACATTACCGAACCCTCTTGTGATTAAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGCGAACAACGGTATGCTTACGATGTTAGGTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTCGCATTAATCAAGAATCAAAAGGGTTGCGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAAAAAGCCAGTACAAGGTTCTATGGTTTCAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACATTAAGAACAATATAAATGTATCGATTTCAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGCAATGGATCAATTGAAGGCTCGTCAACAAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGTGTGTCATCAGACTTTACACCTTCAAATACGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGAACTCTTAAAGTATCTTTTAGGACACTTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACAAAGATTATGCCATCTTCAGTTACTTTAACGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGATGAGAGGTGTAAAAGCACAATTGCATGAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTATACGTGCAAACGGTTCTCTTTTAATTTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACCGGCACAGATTGTGTGATTTGTTGACCTGCGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTCAAAAGTATTTCGTCGAGATGGAGCGACTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGAAGATTTTCCACGCCAATGTATTTTTATGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTAAAATCAGAAACAAAAGGGCAAGCGGTTGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACCATTACCTTTGTTTGCGTTGTTTGATTCTGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACGTTAACTGAACTCGAGTGTTGGCGCTTGAGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACACAGGCTTAAAGAATCATTACAGTTTGCTAGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACTTGACCGTGCAAAAATTAATCACAAGGCGCGTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAACGTTATGATGTTTGGCGATATGGGTCGTCGTTTTTTAGCATTATGTTTATTTAGAAAACATCATCAA

>NC_017568|1|1|684166-684333|PILER-CR
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTT	TTAATCACTATACGATTATGAAAGCCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGA	ACAGTTTGATTTACCTTATCGCTATATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGTTTCTGTTTGTTACTTTTATTCTGTACGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGAACATTACCGAACCCTCTTGTGATTAAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCGAACAACGGTATGCTTACGATGTTAGGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCGCATTAATCAAGAATCAAAAGGGTTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAAAGCCAGTACAAGGTTCTATGGTTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAAGAACAATATAAATGTATCGATTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCAATGGATCAATTGAAGGCTCGTCAACAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GTGTGTCATCAGACTTTACACCTTCAAATAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACTCTTAAAGTATCTTTTAGGACACTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAGATTATGCCATCTTCAGTTACTTTAAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GATGAGAGGTGTAAAAGCACAATTGCATGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATACGTGCAAACGGTTCTCTTTTAATTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGGCACAGATTGTGTGATTTGTTGACCTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCAAAAGTATTTCGTCGAGATGGAGCGACT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAAGATTTTCCACGCCAATGTATTTTTAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TAAAATCAGAAACAAAAGGGCAAGCGGTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTACCTTTGTTTGCGTTGTTTGATTCT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTAACTGAACTCGAGTGTTGGCGCTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	ACAGGCTTAAAGAATCATTACAGTTTGCTA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTGACCGTGCAAAAATTAATCACAAGGCGC


>NC_017568|1|1|684166-685711|CRISPRCasFinder
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TTTTAATCACTATACGATTATGAAAGCCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACAGTTTGATTTACCTTATCGCTATATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGTTTCTGTTTGTTACTTTTATTCTGTAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAACATTACCGAACCCTCTTGTGATTAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCGAACAACGGTATGCTTACGATGTTAGGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCGCATTAATCAAGAATCAAAAGGGTTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAAAGCCAGTACAAGGTTCTATGGTTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAAGAACAATATAAATGTATCGATTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCAATGGATCAATTGAAGGCTCGTCAACAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GTGTGTCATCAGACTTTACACCTTCAAATAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACTCTTAAAGTATCTTTTAGGACACTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAGATTATGCCATCTTCAGTTACTTTAAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GATGAGAGGTGTAAAAGCACAATTGCATGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATACGTGCAAACGGTTCTCTTTTAATTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGGCACAGATTGTGTGATTTGTTGACCTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCAAAAGTATTTCGTCGAGATGGAGCGACT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAAGATTTTCCACGCCAATGTATTTTTAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TAAAATCAGAAACAAAAGGGCAAGCGGTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTACCTTTGTTTGCGTTGTTTGATTCT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTAACTGAACTCGAGTGTTGGCGCTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	ACAGGCTTAAAGAATCATTACAGTTTGCTA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTGACCGTGCAAAAATTAATCACAAGGCGC
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTATGATGTTTGGCGATATGGGTCGTCGT
TTTTTAGCATTATGTTTATTTAGAAAACATCATCAA

>NC_017568|1|1|684166-685711|CRT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TTTTAATCACTATACGATTATGAAAGCCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACAGTTTGATTTACCTTATCGCTATATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGTTTCTGTTTGTTACTTTTATTCTGTAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAACATTACCGAACCCTCTTGTGATTAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCGAACAACGGTATGCTTACGATGTTAGGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCGCATTAATCAAGAATCAAAAGGGTTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAAAGCCAGTACAAGGTTCTATGGTTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAAGAACAATATAAATGTATCGATTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCAATGGATCAATTGAAGGCTCGTCAACAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GTGTGTCATCAGACTTTACACCTTCAAATAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACTCTTAAAGTATCTTTTAGGACACTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAGATTATGCCATCTTCAGTTACTTTAAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GATGAGAGGTGTAAAAGCACAATTGCATGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATACGTGCAAACGGTTCTCTTTTAATTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGGCACAGATTGTGTGATTTGTTGACCTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCAAAAGTATTTCGTCGAGATGGAGCGACT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAAGATTTTCCACGCCAATGTATTTTTAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TAAAATCAGAAACAAAAGGGCAAGCGGTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTACCTTTGTTTGCGTTGTTTGATTCT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTAACTGAACTCGAGTGTTGGCGCTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	ACAGGCTTAAAGAATCATTACAGTTTGCTA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTGACCGTGCAAAAATTAATCACAAGGCGC
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTATGATGTTTGGCGATATGGGTCGTCGT
TTTTTAGCATTATGTTTATTTAGAAAACATCATCAA

>NC_017568|1|2|684427-685645|PILER-CR
	TTAATCACTATACGATTATGAAAGCCT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACGA	ACAGTTTGATTTACCTTATCGCTATATT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGTTTCTGTTTGTTACTTTTATTCTGTACGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAACTGAACATTACCGAACCCTCTTGTGATTAAGTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCGAACAACGGTATGCTTACGATGTTAGGT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCGCATTAATCAAGAATCAAAAGGGTTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAAAGCCAGTACAAGGTTCTATGGTTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	ATTAAGAACAATATAAATGTATCGATTTCA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GCAATGGATCAATTGAAGGCTCGTCAACAA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GTGTGTCATCAGACTTTACACCTTCAAATAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GAACTCTTAAAGTATCTTTTAGGACACTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	AAAGATTATGCCATCTTCAGTTACTTTAAC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	GATGAGAGGTGTAAAAGCACAATTGCATGA
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TATACGTGCAAACGGTTCTCTTTTAATTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CGGCACAGATTGTGTGATTTGTTGACCTGC
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TCAAAAGTATTTCGTCGAGATGGAGCGACT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TGAAGATTTTCCACGCCAATGTATTTTTAT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	TAAAATCAGAAACAAAAGGGCAAGCGGTT
GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	CATTACCTTTGTTTGCGTTGTTTGATTCT
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	GTTAACTGAACTCGAGTGTTGGCGCTTGA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	ACAGGCTTAAAGAATCATTACAGTTTGCTA
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	TTGACCGTGCAAAAATTAATCACAAGGCGC
GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017568.1\|WP_014613259.1\|677896_681901_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_017568.1\|WP_014613269.1\|691436_693392_-\|sialic-acid-synthase	unknown	unknown	gnl\|CDD\|226715
NC_017568.1\|WP_014613256.1\|674198_674513_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|129903
NC_017568.1\|WP_014613255.1\|673204_674173_+\|tagatose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|183502
NC_017568.1\|WP_014613258.1\|676260_677667_+\|6-phospho-beta-galactosidase	unknown	unknown	gnl\|CDD\|184102
NC_017568.1\|WP_014613260.1\|681890_682766_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_017568.1\|WP_014613263.1\|685878_686889_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NC_017568.1\|WP_014613257.1\|674518_676243_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273055
NC_017568.1\|WP_014613271.1\|694660_696424_+\|siderophore-synthetase	unknown	unknown	gnl\|CDD\|226715
NC_017568.1\|WP_014613262.1\|683136_683985_+\|hypothetical-protein	unknown	unknown	unknown
NC_017568.1\|WP_014613267.1\|689601_690093_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NC_017568.1\|WP_014613264.1\|686945_688466_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NC_017568.1\|WP_014613254.1\|672618_673134_+\|galactose-6-phosphate-isomerase-subunit-LacB	unknown	unknown	gnl\|CDD\|181506
NC_017568.1\|WP_014613272.1\|696427_697504_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143490
NC_017568.1\|WP_014613268.1\|690167_691313_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_017568.1\|WP_037542471.1\|688747_689290_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
NC_017568.1\|WP_014613253.1\|672174_672603_+\|galactose-6-phosphate-isomerase-subunit-LacA	unknown	unknown	gnl\|CDD\|181505
NC_017568.1\|WP_014613266.1\|689302_689548_+\|DUF2273-domain-containing-protein	unknown	unknown	gnl\|CDD\|227834
NC_017568.1\|WP_014613270.1\|693492_694677_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_017568.1\|WP_014613261.1\|682846_683140_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NC_017568.1\|WP_014613259.1\|677896_681901_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	5.74664e-104
NC_017568.1\|WP_014613269.1\|691436_693392_-\|sialic-acid-synthase	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	9.30536e-87
NC_017568.1\|WP_014613256.1\|674198_674513_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|129903	TIGR00823, PTS_system_lactose-specific_IIA_component, phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.61878e-44
NC_017568.1\|WP_014613255.1\|673204_674173_+\|tagatose-bisphosphate-aldolase	gnl\|CDD\|183502	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed.	0
NC_017568.1\|WP_014613258.1\|676260_677667_+\|6-phospho-beta-galactosidase	gnl\|CDD\|184102	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.	0
NC_017568.1\|WP_014613260.1\|681890_682766_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.80054e-98
NC_017568.1\|WP_014613263.1\|685878_686889_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.45538e-158
NC_017568.1\|WP_014613257.1\|674518_676243_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273055	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	0
NC_017568.1\|WP_014613271.1\|694660_696424_+\|siderophore-synthetase	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	5.03328e-82
NC_017568.1\|WP_014613267.1\|689601_690093_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	2.46471e-34
NC_017568.1\|WP_014613254.1\|672618_673134_+\|galactose-6-phosphate-isomerase-subunit-LacB	gnl\|CDD\|181506	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed.	1.29917e-120
NC_017568.1\|WP_014613272.1\|696427_697504_+\|alanine-racemase	gnl\|CDD\|143490	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	1.93175e-118
NC_017568.1\|WP_014613268.1\|690167_691313_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	8.13722e-73
NC_017568.1\|WP_037542471.1\|688747_689290_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	2.02053e-34
NC_017568.1\|WP_014613261.1\|682846_683140_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.86692e-23
NC_017568.1\|WP_014613264.1\|686945_688466_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NC_017568.1\|WP_014613266.1\|689302_689548_+\|DUF2273-domain-containing-protein	gnl\|CDD\|227834	COG5547, COG5547, Small integral membrane protein [Function unknown].	3.32221e-17
NC_017568.1\|WP_014613270.1\|693492_694677_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.01957e-55
NC_017568.1\|WP_014613253.1\|672174_672603_+\|galactose-6-phosphate-isomerase-subunit-LacA	gnl\|CDD\|181505	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed.	2.99243e-84

>NC_017568.1|WP_014613262.1|683136_683985_+|hypothetical-protein
MKIASHVTEVLEIKEQSLNIITFEDTDLCGMFIQNFMDYMTNKPVVENQFAHFISDDYETINSKNFHPIILNGGDRDVLGQKLIEEKVYQIFEEQIIKCETTNYEFLKFEQSLTHLKSSLGIYDSDYQIELQSSTFKLRKLLKLFGLDFHNQLKDLNELNKRKAFIDLLIHPTKENILIILFPESHLGIHDIKKFIHLIKRYKFTTIIFTNHPSIIINEENIFLCKSNKKCHDIEKIYEELMLFVPEEVVSHQLVNMIAYHEFVGENLSEYERYFKFINHYN
>NC_017568.1|WP_014613261.1|682846_683140_+|CRISPR-associated-endonuclease-Cas2
MFDLPVETSSERRAYRQFVKFLTNEGYVRLQFSIYCKLIFNSSTLNYQITKLKSVVPSNGIVQTLVVTENQFSNMKCLVGNPPKGQIGLSSERVIEL
>NC_017568.1|WP_014613260.1|681890_682766_+|type-II-CRISPR-associated-endonuclease-Cas1
MSFRTVIITKESKLSLRMNQLIVKSENLSRIPLNEILCLVIEHPNVSMTGHLMNALSDQKIVTILCNTKHLPNTLLLPLYGHHRQARLIQNQMNWKNERKGQLWQLLVKHKILNQKQVIQECFKERDSELFDAFANNVELDDSTNREGHAAKVYFNIVLDPGYARGDDTAQNAAMDYGYQVLLAIVARTIVSKGYLTELGIKHHNEFNIYNLASDFMEIFRPLIDYLVLKNVEQQFETEQKRAILDILNRKLKIDNKKYYFLNAVEIYVDSLFKYLSNGNREVIKIPTWTY
>NC_017568.1|WP_014613259.1|677896_681901_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKNRRIKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYHLQEALLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNNIKLNLDYEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFSIMLLGLKFNEGKLFNHADNAEELKGANQSHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAYDKFRNELKQVKDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKKQYSLLIKELKKIIPQDSELYFEAENDTLLKVLNTTDNASIPMQINLYEAETILRNQQKYHAEITDEMIEKVLSLIQFRIPYYVGPLVNDHTASKFGWMERKSNESIKPWNFDEVVDRSKSATQFIRRMTNKCSYLINEDVLPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEHIFKKYKTVSHSKFLEIMLNSNHRENFMNHGEKLSIFGTQDDKKFASKLSSYQDMTKIFGDIEGKRAQIEEIIQWITIFEDKKILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQGHSIIELLRHSDENFMEILTNDVYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWSTIKLVRELTSIFGEPEKIIMEFATEDQQKGKKQKSRKQLWDDNIKKNKLKSVDEYKYIIDVANKLNNEQLQQEKLWLYLSQNGKCMYSGQSIDLDALLSPNATKHYEVDHIFPRSFIKDDSIDNKVLVIKKMNQTKGDQVPLQFIQQPYERIAYWKSLNKAGLISDSKLHKLMKPEFTAMDKEGFIQRQLVETRQISVHVRDFLKEEYPNTKVIPMKAKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNGVVYHGAQLAYPNVDLFDFNFKWEKVREKWKALGEFNTKQKSRELFFFKKLEKMEVSQGERLISKIKLDMNHFKINYSRKLANIPQQFYNQTAVSPKTAELKYESNKSNEVVYKGLTPYQTYVVAIKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELALYLAQRENKDEVLDAQIVYSLNKGDLLYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNNKETNVEKLLIEYDFIAEKVINEYHHYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKVVTASATRSDKIGSRKNSMTHRAFLGKGKDVKIAYTSISGLKTTKPKSLFKLAESRNEL
>NC_017568.1|WP_014613258.1|676260_677667_+|6-phospho-beta-galactosidase
MKKLPEDFIFGGATAAYQAEGATNIDGKGRVAWDTYLEKNYWYTAEPASDFYHRYPVDLELSEKFGVNGIRISIAWSRIFPKGYGEVNPKGVDYYHRLFKECMKRNVEPFVTLHHFDTPEALHSNGDFLNRDNIQHFVDYAEFCFNEFKEVNYWTTFNEIGPIGDGQYLVGKFPPGIQYHFEKVFQSHHNMMVAHAKAVALFKEQGHQGEIGVVHALPTKYPFNPDDPEDVRAAELEDIIHNKFILDATYLGHYSKETMDGVNHILSINGGALDLRPEDFEILEVAKDLNDFLGINYYMSDWMRSFEGESEITHNSKGDKGGSKYQLKGIGQREFDVDVPRTDWDWMIYPQGLYDQIMRVKKDYPNYKKIYITENGLGYKDEFINDTVQDDARIDYVKQHLEVIADAIEDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQQRYPKKSAYWYKKLAETRIIES
>NC_017568.1|WP_014613257.1|674518_676243_+|PTS-transporter-subunit-EIIC
MNKLIGFIEKGKPFFEKLSRNIYLRAIRDGFISAMPIILFSSIFLLIAYVPNIFDFKWSKETEALIMKPYHYSMGIVGLFVAGTTAKALTDSYNRKLERTNQINFISTMLASMSGFLFLASNTLEAGGFANAFMGTKGLLTAFLSAFITVMIYNICIKNNITIKMPKEVPPNISQVFKDLIPFSLVILTLYGLDILSRSVNKTNVAESILKVFEPLFTAADGYVGITIIFGAFAFFWFVGIHGPSIVEPAIAAITYANIETNFKLLHAGEHADKILTPGTQMFIVTMGGTGATLVVPFIFMWLSKSKRNKAIGRASVIPTFFGVNEPILFGAPIVLNPIFFIPFIMAPIINVWIFKFFVDVIGMNSFSVFLPWTTPGPLGIVMGTGFGVWSFVLAMTLIVVDTFIYYPFFKVYDNQILDDELKGIDSTNELHAKVGENFNTSKADAILNASTNQSVADMTQEANSSNPITKPINVLVLCAGGGTSGLLANALNQAATEYEAPVKAAADSYGAHMDIMKDFDLVILAPQVASNYQDIKQDTDRLGIKLAKTQGGEYISLTRDGQAALKFVQDHFR
>NC_017568.1|WP_014613256.1|674198_674513_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MNREEVAMLGFEIVAYAGDARSKYLEALSAAQVGDYDKAEQLIEEGNQCIVDAHKAQTSLLQKEAMGDDIAYSVTMMHGQDHLMTTILLKDMLKHIIELYKRGS
>NC_017568.1|WP_014613255.1|673204_674173_+|tagatose-bisphosphate-aldolase
MSNKQELLARLSDENGIISALAFDQRGALKRMMAQFQASEPEVRDIEQLKKLVSEELTPYASSILLDPEYGLPATQVRHSSTGLLLAYEKTGYDVNAKGRLPDCLVDWSAKRIKEAGAQAVKFLLYYDVDDEAYINDQKEAYIERIGSECKAEEIPFFLEILAYDDSIKDNKSKEYAKVKPRKVIEAMRVFSNEHFGVDVLKVEVPVDMNYVEGFSQGEFVYTREEAAAYFKQQDEATHLPYIYLSAGVSAQLFQETLKFAHEAGAQFNGVLCGRATWSGAVKAYIENGEEAAREWLRTEGYHNINELNHVLKETAGSYKSK
>NC_017568.1|WP_014613254.1|672618_673134_+|galactose-6-phosphate-isomerase-subunit-LacB
MKIAIGSDHIVTDTKMEVSQFLKSLGHEVLDCGTYDFARTHYPIFGKKVGEAVTSGEADLGICICGTGVGINNAVNKVPGVRSALVRDMSSAIYAKEELNANVIGFGGKIIGELLLCDIVEAFINAEYHPTAENKRLIEKIAQVESENENQKEDSFFDEFLEKWDNGEYHD
>NC_017568.1|WP_014613253.1|672174_672603_+|galactose-6-phosphate-isomerase-subunit-LacA
MKVIIGADQYGLSLKEHIKTFLLQHQYEVLDVTSEELEDFVDVTVAVAKEVQQNDENLGVVIDAYGVGSFMVATKIKGMIAAEVSDERSAYMTRSHNNSKMITMGAALVGQTLAENIVKGFIEGHYDGGRHQIRVDMLNKMG
>NC_017568.1|WP_014613263.1|685878_686889_+|zinc-binding-alcohol-dehydrogenase-family-protein
MEAIIATQPFQLAEGQKFEKVSRELPTPEAHDILIKVYATGINPVDTKMRQAPLNAEARVLGFDAAGVVEAVGDAVTDFKPGDRVYYSGSNQRDGSNQTYQLVNENYLAHMPKTLSFAEAAALPLTAITAYETLFDVFNISPNPQQNQGKTLFIINGAGGVGSIATQIAKTYGLTVVTTASRPETNAWSKKMGADVVLNHKEDLAKQFDDQNLSRPNYIFCTYDTDDYYDVMIDLVQPRGHIATIVAFNKNQDLNALKQKSITFTHEFMFARAIHGVDEGMYRKYLEDVTAKVDAGQYQTTLNSVLKGLTPENVLKAHEMMEAQSHIGKLVIEIVE
>NC_017568.1|WP_014613264.1|686945_688466_+|BCCT-family-transporter
MKQTKKKKHVSLVFWISLLLCSLFVLVGAIFPKQMKETTQSITTWIGQNFSWYYLLLLLAIFLICVYLLFSRYSQITLGEEGEEPEFSLKSWFAMLFSAGMGIGLVFWTTAEPISHAYTATPIHQAGTQAAIDDSLQFAFFHWGIHAWAVYAIVALAFAYFNFHKGYPGLVSATLTPLFGEKQMQGPLGKLLDILAVIATVTGVSATLGFGALQISEGLNFLFNIPANFTTQILIIIMATALFIWSTWSGLSKGIKMLSNINMILAFIVLVVVFIIGPTLYILNMFTNSLGHYIAHFFDMSLRLTINNPEKSQWIQNWTVFYWAWWISWAPFVGIFIARVSRGRTIKEFIIGVLFVPSLVCFIFFSVFGASAIYLQDNGIANIAGEAIETATFATLEHFPLGFVMSIVTLVVVMIFFVTSADSATYVLGMLSTNGDNYPGSWVKVSWGIMLALFAFIMLLTGGTQAIQNLLIIAALPFSFVIIFMIWSLFKALAAERPRLSKRNDH
>NC_017568.1|WP_037542471.1|688747_689290_+|alkaline-shock-response-membrane-anchor-protein-AmaP
MTRIKNFILGLLIVIIVGFLLFMYIDYQPIKEYQDYFYQFNWFQPLLIGLAGLLILIGLILFLRAFKPTYRKPGLYKDYSDGHIYISRKSIENTVYDTLSKYDEVRQPNVVSKLYNKKKSSFIDITTDFIVPSESANVPSLVEQVRLDIKESVERFSELHVKSVKVNVRDQKRDNGPRVV
>NC_017568.1|WP_014613266.1|689302_689548_+|DUF2273-domain-containing-protein
MSNENRNGQSERDSVEQFAKILQSYKWRIIGFFFFLIIAILFLTLGFWKTILIIVLCLIGIGVGYIKDRTQDFLNLLNRLS
>NC_017568.1|WP_014613267.1|689601_690093_+|Asp23/Gls24-family-envelope-stress-response-protein
MTVENNKVKESYNRETGVNEKERQQREDNQGQQFSNSLTFSDEVVEKIAGIAAREVRGILDMKGGFVDSISGSFSGGNNVTQGVSAEVGEKQAAIDLKVILEYGESAPKIFRKVTELIKEQVKHITGLDVVEVNMQVDDVMTRKEWQQKHEKNKDQNENKGLQ
>NC_017568.1|WP_014613268.1|690167_691313_-|MFS-transporter
MTIMRTLTFMLSIFIVGMVEMVVAGIMNLMSADLNISEAWIGQLVTIYAFTFALTGPILVKLTEKYSPKSVLLSAIAFFVIGNLMIALSPNFTILIIGRIISSAAAALIVVKILSTTVVLARPENRGKMLGIVYTGFSASNVFGVPIGTLIGDWAGWRFTFGLIILVGLIAGVLLTIYLPKEVKSSLQPTQNHTSRILDKGEVTKLLSITFILLTANSVAYIYINPLILSGGHNIQFVSLALLIIGIAGMLGTSMGGFFTDKLSFKTWLLVSGGAFVIVMLVLNQLWTASTILLIALFIWHIIQWSTNPAVQSGLIDQVEGDNSQVMSWNMSALNAGIGFGALLGGLIVSHIDLHATIYFAAGIGFIGFIIIVMLKKKRVA
>NC_017568.1|WP_014613269.1|691436_693392_-|sialic-acid-synthase
MKTEQNHLSMMEKDFTKDEMENYQAVLQFDSNWATQFKRHVLVGRDKITARLMASLYRENLVGSYTHSTFIQAEQLAHSAIPSGELLMIHFTYGQLTLYARVISHHAFNRVDVTGPFYWRTADGEDRRVLHPNEVLDVIINEDTRYQGASAEQFRDDMENSAAHMALALSYQAQHPLKDAPSLLDYIEAQDDPYLTSEQLVVEGHPLHPGAKLRKGMSAQETIDYSSEYQHAMLMQFILVHHDVARTMAQHGTYAEAVYHAFDGLKSVALQAIGSDAPLEDYMPLIVHPWQYEHIIRTEYQHELDTKAIIPLDYTKSYYAGLSFRTLMPKKPDVSPHIKLSTNVHITGEIRTLSEQTTHNGPLMTNILTDISARDALFNNVSTSPVPEIAGAHFYQPKDSHPDEQERRSEQLGTLFRQNIYDMIDSERLPVIPSSLVVTHPETACPLIVELVERFRQTNDTTTDIDVRAQWFKTYAASLIDYVVPLLVKYGIALEAHLQNTIAVFEPSTGAFSHMLIRDFEGLRIDAEQLTQMGYDTSHFHEKSRILTKSQTSVFNKAFYSTIQNHLGELVAVLSRFYDDVALENTLWSIVRQQIEQCFDKLEAADINPERLAHMQNVFFNEKIDYKCVTTMRLMDEAHEYTYVKVDNPLS
>NC_017568.1|WP_014613270.1|693492_694677_+|MFS-transporter
MAKWFFPSTFLLFLGNWIGQIALNWYAYQLNENPMDLALINFFRLAPIFILSLWAGSIADRYRRSTLIKMTVTSSMVITGTLTVCVLFMNDIPMLYLYIYACLRGCMSAIETPVRQAVLPDISERLSVSKAVSYHSFLLNVCRSIGPAVAGFIIAVYDVPIAFVVQTICYALALVSSLPLKLAVVKPVKNKQFSIAVAMQYFKLHLQGRRIFMTSLLIMAMGYSYTTMLPILTDEVYPNSASVFGTAMTVSAIGGILATLTIPYVLQKFSTDNCYYLSSILFGIALLLLYPLGEIGLFLMIFFVGLFGQFARTTNRIYFQNDVEQESRGKILSVIMMDRGMIPLGAMLLSYFTELIGITTTFLVMGGATTIIAILGFLTNFKMNGGKTVHDTHA
>NC_017568.1|WP_014613271.1|694660_696424_+|siderophore-synthetase
MTLTHKLNADQNIQYRILIACMKEQLFPEKTQLQFKQNQVMIQYHQHVLAVQYETISTLYQLELSGPIVYRVGTEDVTIETVEQLIEILGTHFGITFHDQLVEELLHSRLGLELSYQQLRQRERVMRHSLKFSRMPDTLNFIAWLNHMNGDELFSVLGYTEGMVWEGHPSHPLTKTKLPLNAEEIQQYAPEFMKIIPLKMVLVRKALLKSTSMTGEEDFVLRKMFPDKESQLRQWMQTYEGTLDDYRIMLVHPWQYTNVITTRFKTMIAQHDVIPTPFTVDSKATLSFRTMRLLHYPYHVKLPVNVQATSAVRTVSTVTTVDGPKLSYQLQDMLDIYPTLTVASEPYGAHIDVEADLARQFAMIVRHSPEVHTHDYTQLVTAVLTQVNPVDGQVVVDSLIEYLYGDMNGETIQQFMRQYMEALIPPLIAYIQQYGIALEAHQQNTILQMDKENETLSFIVRDLGGSRIYPETLKQTVPDFEITNDSLVSDKIEAVIAKFQHAVIQNQLGTLIHHFHHKHQIDEATLYTIAAAEIEASIDPTRPHADALKRILFGEKMTVKALLNMRMEQKVKQYVQIDIKNPLEREL
>NC_017568.1|WP_014613272.1|696427_697504_+|alanine-racemase
MPQIHINLSKIKYNAMVLQHMLAEQGIRMIPVTKCMGGDPKVRQQFREMGFNTLSESRLTAMMTNEQHPTEHDMMIKGALPNEIHDVVRYSQISIQTELETIRALSDEAVAQGVKHHIYLMVDWKDGREGALTYEVVPLIKQIIRLKGVYLKGLSFNFMCFRQIPPTEEDIVYINYFIESVERDTGVKFKTISGGNSSMLTLAMYADLGRINELRIGEALFRGYETAYNMRLPYLFDNAVTLSGRILEIKPRLNLETRQSYMQALVDIGQLDTVIAGIQPVDHQLKIVGHSSDTLMMNLGLADYYQLGDKIEFHLDYSALAHSMHMQHIPRSYEEDLGIEQLVRGFVDIKKNNFIKQY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017568_1	1.7\|684463\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684463-684492	30	AP019560	Staphylococcus phage SP120 DNA, complete genome	10444-10473	0	1.0
NC_017568_1	1.7\|684463\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684463-684492	30	MK075006	Staphylococcus phage phiSP119-3, complete genome	39211-39240	0	1.0
NC_017568_1	1.7\|684463\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684463-684492	30	MK075003	Staphylococcus phage phiSP44-1, complete genome	35825-35854	0	1.0
NC_017568_1	1.8\|684529\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684529-684557	29	MK075005	Staphylococcus phage phiSP119-2, partial genome	6665-6693	0	1.0
NC_017568_1	1.18\|685187\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685187-685216	30	AP019561	Staphylococcus phage SP197 DNA, complete genome	4698-4727	0	1.0
NC_017568_1	1.19\|685253\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685253-685282	30	MK075001	Staphylococcus phage phiSP15-1, complete genome	17778-17807	0	1.0
NC_017568_1	1.19\|685253\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685253-685282	30	NC_007051	Staphylococcus phage 2638A, complete genome	37627-37656	0	1.0
NC_017568_1	1.19\|685253\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685253-685282	30	MK450538	Staphylococcus phage vB_SpsS_QT1, complete genome	39336-39365	0	1.0
NC_017568_1	1.19\|685253\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685253-685282	30	AY954954	Bacteriophage 2638A, complete genome	37627-37656	0	1.0
NC_017568_1	1.17\|685121\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685121-685150	30	MK075001	Staphylococcus phage phiSP15-1, complete genome	6607-6636	1	0.967
NC_017568_1	1.17\|685121\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685121-685150	30	MK075006	Staphylococcus phage phiSP119-3, complete genome	10319-10348	1	0.967
NC_017568_1	1.22\|685449\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685449-685477	29	AP019561	Staphylococcus phage SP197 DNA, complete genome	5064-5092	1	0.966
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MF428481	Staphylococcus phage SN8, complete genome	29670-29699	1	0.967
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	KX827370	Staphylococcus phage SpT252, complete genome	18457-18486	1	0.967
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	KX827368	Staphylococcus phage SpT5, complete genome	18482-18511	1	0.967
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MN028536	Staphylococcus phage vB_SpsM_WIS42, complete genome	29806-29835	1	0.967
NC_017568_1	1.16\|685056\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685056-685084	29	KX827371	Staphylococcus phage SpT99F3, complete genome	25341-25369	2	0.931
NC_017568_1	1.17\|685121\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685121-685150	30	NZ_CP031273	Staphylococcus chromogenes strain 17A plasmid unnamed1	8863-8892	2	0.933
NC_017568_1	1.21\|685384\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685384-685412	29	MK075005	Staphylococcus phage phiSP119-2, partial genome	19561-19589	2	0.931
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	NZ_CP013486	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence	54603-54631	3	0.897
NC_017568_1	1.20\|685319\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685319-685347	29	MK075005	Staphylococcus phage phiSP119-2, partial genome	21131-21159	3	0.897
NC_017568_1	1.21\|685384\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685384-685412	29	NZ_CP031032	Runella sp. SP2 plasmid pSP2_2, complete sequence	22511-22539	3	0.897
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	KX827371	Staphylococcus phage SpT99F3, complete genome	7719-7748	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	AP019561	Staphylococcus phage SP197 DNA, complete genome	38579-38608	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MT423824	Staphylococcus virus pSp_SNUABM-S, complete genome	14357-14386	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MT423823	Staphylococcus virus pSp_SNUABM-J, complete genome	14935-14964	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	AP019560	Staphylococcus phage SP120 DNA, complete genome	22240-22269	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MF428478	Staphylococcus phage SN13, complete genome	30329-30358	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MF428479	Staphylococcus phage SN11, complete genome	29607-29636	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	AP019562	Staphylococcus phage SP276 DNA, complete genome	19269-19298	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MF428480	Staphylococcus phage SN10, complete genome	29646-29675	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	KX827369	Staphylococcus phage SpT152, complete genome	7191-7220	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MK075002	Staphylococcus phage phiSP38-1, complete genome	8436-8465	4	0.867
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MK075003	Staphylococcus phage phiSP44-1, complete genome	8996-9025	4	0.867
NC_017568_1	1.1\|684204\|27\|NC_017568\|PILER-CR	684204-684230	27	KU998254	Gordonia phage Kampe, complete genome	29248-29274	5	0.815
NC_017568_1	1.1\|684204\|27\|NC_017568\|PILER-CR	684204-684230	27	KU998252	Gordonia phage PatrickStar, complete genome	29248-29274	5	0.815
NC_017568_1	1.1\|684204\|27\|NC_017568\|PILER-CR	684204-684230	27	NC_030915	Gordonia phage Orchid, complete genome	29248-29274	5	0.815
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	NZ_CP046807	Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence	135388-135416	5	0.828
NC_017568_1	1.21\|685384\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685384-685412	29	NC_015253	Brochothrix phage A9, complete genome	112744-112772	5	0.828
NC_017568_1	1.21\|685384\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685384-685412	29	MH616946	Microviridae sp. isolate ctbi921, complete genome	639-667	5	0.828
NC_017568_1	1.2\|684269\|28\|NC_017568\|PILER-CR	684269-684296	28	MT939241	Enterococcus phage 9183, complete genome	13853-13880	6	0.786
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	NC_022877	Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence	73479-73507	6	0.793
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	MH572395	Microviridae sp. isolate SD_SF_35, complete genome	3878-3906	6	0.793
NC_017568_1	1.15\|684990\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684990-685019	30	MN694792	Marine virus AFVG_250M662, complete genome	10369-10398	6	0.8
NC_017568_1	1.15\|684990\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684990-685019	30	MN694757	Marine virus AFVG_250M663, complete genome	10375-10404	6	0.8
NC_017568_1	1.16\|685056\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685056-685084	29	MK075002	Staphylococcus phage phiSP38-1, complete genome	27378-27406	6	0.793
NC_017568_1	1.3\|684202\|29\|NC_017568\|CRISPRCasFinder,CRT	684202-684230	29	KU998254	Gordonia phage Kampe, complete genome	29247-29275	7	0.759
NC_017568_1	1.3\|684202\|29\|NC_017568\|CRISPRCasFinder,CRT	684202-684230	29	KU998252	Gordonia phage PatrickStar, complete genome	29247-29275	7	0.759
NC_017568_1	1.3\|684202\|29\|NC_017568\|CRISPRCasFinder,CRT	684202-684230	29	NC_030915	Gordonia phage Orchid, complete genome	29247-29275	7	0.759
NC_017568_1	1.4\|684267\|30\|NC_017568\|CRISPRCasFinder,CRT	684267-684296	30	NZ_CP007649	Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence	23743-23772	7	0.767
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	NC_019686	Rivularia sp. PCC 7116 plasmid pRIV7116.02, complete sequence	905-933	7	0.759
NC_017568_1	1.5\|684333\|29\|NC_017568\|CRISPRCasFinder,CRT	684333-684361	29	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	12758-12786	7	0.759
NC_017568_1	1.14\|684924\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684924-684953	30	MN694470	Marine virus AFVG_250M476, complete genome	708-737	7	0.767
NC_017568_1	1.14\|684924\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684924-684953	30	MN693658	Marine virus AFVG_250M475, complete genome	708-737	7	0.767
NC_017568_1	1.19\|685253\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685253-685282	30	MK448735	Streptococcus phage Javan349, complete genome	35736-35765	7	0.767
NC_017568_1	1.21\|685384\|29\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685384-685412	29	MN694443	Marine virus AFVG_250M280, complete genome	54181-54209	7	0.759
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	HQ634189	Cyanophage Syn30 genomic sequence	75476-75505	7	0.767
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MH920640	Synechoccus phage S-E7, complete genome	114579-114608	7	0.767
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MH920639	Synechoccus phage S-P4, partial genome	125007-125036	7	0.767
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	MN850591	Escherichia phage aalborv, complete genome	5971-6000	7	0.767
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	NC_049830	Escherichia phage PGN590, complete genome	24730-24759	7	0.767
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	MN850600	Escherichia phage haarsle, complete genome	31890-31919	7	0.767
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	NC_042025	Salmonella phage SE1 (in:Nonagvirus), complete genome	57243-57272	7	0.767
NC_017568_1	1.4\|684267\|30\|NC_017568\|CRISPRCasFinder,CRT	684267-684296	30	MT939241	Enterococcus phage 9183, complete genome	13852-13881	8	0.733
NC_017568_1	1.7\|684463\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684463-684492	30	MN062188	Proteus phage Saba, complete genome	39875-39904	8	0.733
NC_017568_1	1.9\|684594\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684594-684623	30	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	26321-26350	8	0.733
NC_017568_1	1.14\|684924\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684924-684953	30	MN694027	Marine virus AFVG_250M455, complete genome	16072-16101	8	0.733
NC_017568_1	1.14\|684924\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684924-684953	30	MN694088	Marine virus AFVG_250M454, complete genome	35567-35596	8	0.733
NC_017568_1	1.14\|684924\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	684924-684953	30	MN694007	Marine virus AFVG_250M456, complete genome	35973-36002	8	0.733
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MN694803	Marine virus AFVG_250M814, complete genome	30367-30396	8	0.733
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	MG065637	UNVERIFIED: Campylobacter phage A15b, complete genome	21264-21293	8	0.733
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	NC_049825	Escherichia phage grams, complete genome	37310-37339	8	0.733
NC_017568_1	1.24\|685580\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685580-685609	30	MG065636	UNVERIFIED: Campylobacter phage A16a, complete genome	14723-14752	8	0.733
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MN693530	Marine virus AFVG_25M373, complete genome	31705-31734	9	0.7
NC_017568_1	1.23\|685514\|30\|NC_017568\|CRISPRCasFinder,CRT,PILER-CR	685514-685543	30	MN693144	Marine virus AFVG_25M372, complete genome	32285-32314	9	0.7

1. spacer 1.7|684463|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019560 (Staphylococcus phage SP120 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gcgaacaacggtatgcttacgatgttaggt	CRISPR spacer
gcgaacaacggtatgcttacgatgttaggt	Protospacer
******************************

2. spacer 1.7|684463|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075006 (Staphylococcus phage phiSP119-3, complete genome) position: , mismatch: 0, identity: 1.0

gcgaacaacggtatgcttacgatgttaggt	CRISPR spacer
gcgaacaacggtatgcttacgatgttaggt	Protospacer
******************************

3. spacer 1.7|684463|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075003 (Staphylococcus phage phiSP44-1, complete genome) position: , mismatch: 0, identity: 1.0

gcgaacaacggtatgcttacgatgttaggt	CRISPR spacer
gcgaacaacggtatgcttacgatgttaggt	Protospacer
******************************

4. spacer 1.8|684529|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 0, identity: 1.0

tcgcattaatcaagaatcaaaagggttgc	CRISPR spacer
tcgcattaatcaagaatcaaaagggttgc	Protospacer
*****************************

5. spacer 1.18|685187|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019561 (Staphylococcus phage SP197 DNA, complete genome) position: , mismatch: 0, identity: 1.0

tcaaaagtatttcgtcgagatggagcgact	CRISPR spacer
tcaaaagtatttcgtcgagatggagcgact	Protospacer
******************************

6. spacer 1.19|685253|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075001 (Staphylococcus phage phiSP15-1, complete genome) position: , mismatch: 0, identity: 1.0

tgaagattttccacgccaatgtatttttat	CRISPR spacer
tgaagattttccacgccaatgtatttttat	Protospacer
******************************

7. spacer 1.19|685253|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_007051 (Staphylococcus phage 2638A, complete genome) position: , mismatch: 0, identity: 1.0

tgaagattttccacgccaatgtatttttat	CRISPR spacer
tgaagattttccacgccaatgtatttttat	Protospacer
******************************

8. spacer 1.19|685253|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK450538 (Staphylococcus phage vB_SpsS_QT1, complete genome) position: , mismatch: 0, identity: 1.0

tgaagattttccacgccaatgtatttttat	CRISPR spacer
tgaagattttccacgccaatgtatttttat	Protospacer
******************************

9. spacer 1.19|685253|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AY954954 (Bacteriophage 2638A, complete genome) position: , mismatch: 0, identity: 1.0

tgaagattttccacgccaatgtatttttat	CRISPR spacer
tgaagattttccacgccaatgtatttttat	Protospacer
******************************

10. spacer 1.17|685121|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075001 (Staphylococcus phage phiSP15-1, complete genome) position: , mismatch: 1, identity: 0.967

cggcacagattgtgtgatttgttgacctgc	CRISPR spacer
cggcacagattgtgtgatttgttgacctac	Protospacer
****************************.*

11. spacer 1.17|685121|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075006 (Staphylococcus phage phiSP119-3, complete genome) position: , mismatch: 1, identity: 0.967

cggcacagattgtgtgatttgttgacctgc	CRISPR spacer
cggcacagattgtgtgatttgttgtcctgc	Protospacer
************************ *****

12. spacer 1.22|685449|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019561 (Staphylococcus phage SP197 DNA, complete genome) position: , mismatch: 1, identity: 0.966

gttaactgaactcgagtgttggcgcttga	CRISPR spacer
gttaactgaactcgagtgttggcgcttaa	Protospacer
***************************.*

13. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MF428481 (Staphylococcus phage SN8, complete genome) position: , mismatch: 1, identity: 0.967

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattacagtttgcta	Protospacer
.*****************************

14. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to KX827370 (Staphylococcus phage SpT252, complete genome) position: , mismatch: 1, identity: 0.967

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattacagtttgcta	Protospacer
.*****************************

15. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to KX827368 (Staphylococcus phage SpT5, complete genome) position: , mismatch: 1, identity: 0.967

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattacagtttgcta	Protospacer
.*****************************

16. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN028536 (Staphylococcus phage vB_SpsM_WIS42, complete genome) position: , mismatch: 1, identity: 0.967

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattacagtttgcta	Protospacer
.*****************************

17. spacer 1.16|685056|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to KX827371 (Staphylococcus phage SpT99F3, complete genome) position: , mismatch: 2, identity: 0.931

tatacgtgcaaacggttctcttttaattt	CRISPR spacer
tattcgtgcaaacggttctcttttaattc	Protospacer
*** ************************.

18. spacer 1.17|685121|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031273 (Staphylococcus chromogenes strain 17A plasmid unnamed1) position: , mismatch: 2, identity: 0.933

cggcacagattgtgtgatttgttgacctgc	CRISPR spacer
cggaacagattgtgtgatttgttgaccggc	Protospacer
*** *********************** **

19. spacer 1.21|685384|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 2, identity: 0.931

cattacctttgtttgcgttgtttgattct	CRISPR spacer
cattacctttgttggcgttgcttgattct	Protospacer
************* ******.********

20. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to NZ_CP013486 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence) position: , mismatch: 3, identity: 0.897

tgtttctgtttgttacttttattc-tgtac	CRISPR spacer
tggttctgtttgttactttttttcttgta-	Protospacer
** ***************** *** ****

21. spacer 1.20|685319|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 3, identity: 0.897

taaaatcagaaacaaaagggcaagcggtt	CRISPR spacer
taaaatcagaaacgaaagggcaagcagta	Protospacer
*************.***********.**

22. spacer 1.21|685384|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031032 (Runella sp. SP2 plasmid pSP2_2, complete sequence) position: , mismatch: 3, identity: 0.897

cattacctttgtttgcgttgtttgattct	CRISPR spacer
tattaccttcgttttcgttgtttgattct	Protospacer
.********.**** **************

23. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to KX827371 (Staphylococcus phage SpT99F3, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

24. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019561 (Staphylococcus phage SP197 DNA, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

25. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MT423824 (Staphylococcus virus pSp_SNUABM-S, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

26. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MT423823 (Staphylococcus virus pSp_SNUABM-J, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

27. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019560 (Staphylococcus phage SP120 DNA, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

28. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MF428478 (Staphylococcus phage SN13, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

29. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MF428479 (Staphylococcus phage SN11, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

30. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to AP019562 (Staphylococcus phage SP276 DNA, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

31. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MF428480 (Staphylococcus phage SN10, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

32. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to KX827369 (Staphylococcus phage SpT152, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

33. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075002 (Staphylococcus phage phiSP38-1, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

34. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075003 (Staphylococcus phage phiSP44-1, complete genome) position: , mismatch: 4, identity: 0.867

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gcaggcttaaagaatcattgcagttcgcaa	Protospacer
.******************.*****.** *

35. spacer 1.1|684204|27|NC_017568|PILER-CR matches to KU998254 (Gordonia phage Kampe, complete genome) position: , mismatch: 5, identity: 0.815

tttaatcactatacgattatgaaagcc	CRISPR spacer
tttaatcagtacacgattatgaatggt	Protospacer
******** **.*********** * .

36. spacer 1.1|684204|27|NC_017568|PILER-CR matches to KU998252 (Gordonia phage PatrickStar, complete genome) position: , mismatch: 5, identity: 0.815

tttaatcactatacgattatgaaagcc	CRISPR spacer
tttaatcagtacacgattatgaatggt	Protospacer
******** **.*********** * .

37. spacer 1.1|684204|27|NC_017568|PILER-CR matches to NC_030915 (Gordonia phage Orchid, complete genome) position: , mismatch: 5, identity: 0.815

tttaatcactatacgattatgaaagcc	CRISPR spacer
tttaatcagtacacgattatgaatggt	Protospacer
******** **.*********** * .

38. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to NZ_CP046807 (Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

tgtttctgtttgttacttttattc-tgtac	CRISPR spacer
cagttctgtttgttactttttttcttgta-	Protospacer
.. ***************** *** ****

39. spacer 1.21|685384|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_015253 (Brochothrix phage A9, complete genome) position: , mismatch: 5, identity: 0.828

cattacctttgtttgcgttgtttgattct	CRISPR spacer
acttacctttgtttgtgttgtttgacttt	Protospacer
  *************.*********.*.*

40. spacer 1.21|685384|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MH616946 (Microviridae sp. isolate ctbi921, complete genome) position: , mismatch: 5, identity: 0.828

cattacctttgtttgcgttgtttgattct	CRISPR spacer
cactgcctttgtttgcgttgtttgtatca	Protospacer
**.*.*******************  **

41. spacer 1.2|684269|28|NC_017568|PILER-CR matches to MT939241 (Enterococcus phage 9183, complete genome) position: , mismatch: 6, identity: 0.786

aacagtttgatttaccttatcgctatat	CRISPR spacer
aacagtttgttttaccttatctgtcgtt	Protospacer
********* ***********  *   *

42. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to NC_022877 (Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence) position: , mismatch: 6, identity: 0.793

tgtttctgtttgttacttttattctgtac	CRISPR spacer
tttttctgtttgttacttgtattcattct	Protospacer
* **************** *****  * .

43. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to MH572395 (Microviridae sp. isolate SD_SF_35, complete genome) position: , mismatch: 6, identity: 0.793

tgtttctgtttgttacttttattctgtac	CRISPR spacer
tgtttctgtttgttaattttgtttttcgc	Protospacer
*************** ****.**.* ..*

44. spacer 1.15|684990|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694792 (Marine virus AFVG_250M662, complete genome) position: , mismatch: 6, identity: 0.8

gatgagaggtgtaaaagcacaattgcatga	CRISPR spacer
gagcattggtttaaaagcacaattgcagga	Protospacer
**  *  *** **************** **

45. spacer 1.15|684990|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694757 (Marine virus AFVG_250M663, complete genome) position: , mismatch: 6, identity: 0.8

gatgagaggtgtaaaagcacaattgcatga	CRISPR spacer
gagcattggtttaaaagcacaattgcagga	Protospacer
**  *  *** **************** **

46. spacer 1.16|685056|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK075002 (Staphylococcus phage phiSP38-1, complete genome) position: , mismatch: 6, identity: 0.793

tatacgtgcaaacggttctcttttaattt	CRISPR spacer
cattcgtgcaaacggttctctttttttag	Protospacer
.** ********************  *

47. spacer 1.3|684202|29|NC_017568|CRISPRCasFinder,CRT matches to KU998254 (Gordonia phage Kampe, complete genome) position: , mismatch: 7, identity: 0.759

ttttaatcactatacgattatgaaagcct	CRISPR spacer
gtttaatcagtacacgattatgaatggtg	Protospacer
 ******** **.*********** * .

48. spacer 1.3|684202|29|NC_017568|CRISPRCasFinder,CRT matches to KU998252 (Gordonia phage PatrickStar, complete genome) position: , mismatch: 7, identity: 0.759

ttttaatcactatacgattatgaaagcct	CRISPR spacer
gtttaatcagtacacgattatgaatggtg	Protospacer
 ******** **.*********** * .

49. spacer 1.3|684202|29|NC_017568|CRISPRCasFinder,CRT matches to NC_030915 (Gordonia phage Orchid, complete genome) position: , mismatch: 7, identity: 0.759

ttttaatcactatacgattatgaaagcct	CRISPR spacer
gtttaatcagtacacgattatgaatggtg	Protospacer
 ******** **.*********** * .

50. spacer 1.4|684267|30|NC_017568|CRISPRCasFinder,CRT matches to NZ_CP007649 (Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence) position: , mismatch: 7, identity: 0.767

gaacagtttgatttaccttatcgctatatt	CRISPR spacer
gaacagtttgatttacgttattattaacat	Protospacer
**************** ****...**   *

51. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to NC_019686 (Rivularia sp. PCC 7116 plasmid pRIV7116.02, complete sequence) position: , mismatch: 7, identity: 0.759

tgtttctgtttgttacttttattctgtac	CRISPR spacer
gatttctgtttcttactttttttcttaaa	Protospacer
 .********* ******** ****  *

52. spacer 1.5|684333|29|NC_017568|CRISPRCasFinder,CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 7, identity: 0.759

tgtttctgtttgttacttttattctgtac	CRISPR spacer
tatttttgtttgttacttttatttgtttg	Protospacer
*.***.*****************.  *

53. spacer 1.14|684924|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694470 (Marine virus AFVG_250M476, complete genome) position: , mismatch: 7, identity: 0.767

aaagattatgccatcttcagttactttaac	CRISPR spacer
tgtaactatggcatcttcagttacattaac	Protospacer
 . .*.**** ************* *****

54. spacer 1.14|684924|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN693658 (Marine virus AFVG_250M475, complete genome) position: , mismatch: 7, identity: 0.767

aaagattatgccatcttcagttactttaac	CRISPR spacer
tgtaactatggcatcttcagttacattaac	Protospacer
 . .*.**** ************* *****

55. spacer 1.19|685253|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 7, identity: 0.767

tgaagattttccacgccaatgtatttttat	CRISPR spacer
tgaagattttccacgctaatgtcataactt	Protospacer
****************.*****  *  . *

56. spacer 1.21|685384|29|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694443 (Marine virus AFVG_250M280, complete genome) position: , mismatch: 7, identity: 0.759

cattacctttgtttgcgttgtttgattct	CRISPR spacer
ttgtccctttgtttgcgttgttttatatt	Protospacer
.  * ****************** ** .*

57. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to HQ634189 (Cyanophage Syn30 genomic sequence) position: , mismatch: 7, identity: 0.767

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
aataccttaaagaatcattacacattgctt	Protospacer
*  . *****************  *****

58. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MH920640 (Synechoccus phage S-E7, complete genome) position: , mismatch: 7, identity: 0.767

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
aataccttaaagaatcattacacattgctt	Protospacer
*  . *****************  *****

59. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MH920639 (Synechoccus phage S-P4, partial genome) position: , mismatch: 7, identity: 0.767

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
aataccttaaagaatcattacacattgctt	Protospacer
*  . *****************  *****

60. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN850591 (Escherichia phage aalborv, complete genome) position: , mismatch: 7, identity: 0.767

-----ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gaaaattaa-----caaaaaataatcacaaggcgc	Protospacer
     **.*     ****** **************

61. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_049830 (Escherichia phage PGN590, complete genome) position: , mismatch: 7, identity: 0.767

-----ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gaaaattaa-----caaaaaataatcacaaggcgc	Protospacer
     **.*     ****** **************

62. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN850600 (Escherichia phage haarsle, complete genome) position: , mismatch: 7, identity: 0.767

-----ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gaaagttaa-----caaaaaataatcacaaggcgc	Protospacer
     **.*     ****** **************

63. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_042025 (Salmonella phage SE1 (in:Nonagvirus), complete genome) position: , mismatch: 7, identity: 0.767

-----ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gaaagttaa-----caaaaaataatcacaaggcgc	Protospacer
     **.*     ****** **************

64. spacer 1.4|684267|30|NC_017568|CRISPRCasFinder,CRT matches to MT939241 (Enterococcus phage 9183, complete genome) position: , mismatch: 8, identity: 0.733

gaacagtttgatttaccttatcgctatatt	CRISPR spacer
caacagtttgttttaccttatctgtcgttg	Protospacer
 ********* ***********  *   *

65. spacer 1.7|684463|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN062188 (Proteus phage Saba, complete genome) position: , mismatch: 8, identity: 0.733

gcgaacaacggtatgcttacgatgttaggt	CRISPR spacer
ccgaacaacggtacgcttacaatgctttcg	Protospacer
 ************.******.***.*

66. spacer 1.9|684594|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaagccagtacaaggttctatggtttca	CRISPR spacer
taaaagccagtataaggttctactcgtcct	Protospacer
 ***********.*********.   *.*

67. spacer 1.14|684924|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694027 (Marine virus AFVG_250M455, complete genome) position: , mismatch: 8, identity: 0.733

aaagattatgccatcttcagttactttaac	CRISPR spacer
tccaacaatgctatcttcatttactttaac	Protospacer
   .*. ****.******* **********

68. spacer 1.14|684924|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694088 (Marine virus AFVG_250M454, complete genome) position: , mismatch: 8, identity: 0.733

aaagattatgccatcttcagttactttaac	CRISPR spacer
tccaacaatgctatcttcatttactttaac	Protospacer
   .*. ****.******* **********

69. spacer 1.14|684924|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694007 (Marine virus AFVG_250M456, complete genome) position: , mismatch: 8, identity: 0.733

aaagattatgccatcttcagttactttaac	CRISPR spacer
tccaacaatgctatcttcatttactttaac	Protospacer
   .*. ****.******* **********

70. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 8, identity: 0.733

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
catctcctgaagaatcattacagattgcta	Protospacer
     *.*.************** ******

71. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MG065637 (UNVERIFIED: Campylobacter phage A15b, complete genome) position: , mismatch: 8, identity: 0.733

ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gagagttaacaaaaaataatcacaaggcgc	Protospacer
  ** .  .****** **************

72. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to NC_049825 (Escherichia phage grams, complete genome) position: , mismatch: 8, identity: 0.733

ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gagagttaacaaaaaataatcacaaggcgc	Protospacer
  ** .  .****** **************

73. spacer 1.24|685580|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MG065636 (UNVERIFIED: Campylobacter phage A16a, complete genome) position: , mismatch: 8, identity: 0.733

ttgaccgtgcaaaaattaatcacaaggcgc	CRISPR spacer
gagagttaacaaaaaataatcacaaggcgc	Protospacer
  ** .  .****** **************

74. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN693530 (Marine virus AFVG_25M373, complete genome) position: , mismatch: 9, identity: 0.7

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gatttcttaaagaagcattacattttgcag	Protospacer
.    ********* ******* ***** .

75. spacer 1.23|685514|30|NC_017568|CRISPRCasFinder,CRT,PILER-CR matches to MN693144 (Marine virus AFVG_25M372, complete genome) position: , mismatch: 9, identity: 0.7

acaggcttaaagaatcattacagtttgcta	CRISPR spacer
gatttcttaaagaagcattacattttgcag	Protospacer
.    ********* ******* ***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

471362 : 520396

Staphylococcus_phage(20.0%)

transposase,integrase,tRNA

attL 462335:462350|attR 491441:491456

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
462335:462350	attL	NA	NA	NA	NA
WP_049773651.1\|471362_471788_-\|transposase	transposase	A0A146ICT8	Staphylococcus_phage	1.1e-38	57.4
WP_014613048.1\|471965_473411_-	YcaO-like family protein	NA	NA	NA	NA
WP_014613049.1\|473415_474285_-	nitroreductase family protein	NA	NA	NA	NA
WP_014613050.1\|474290_475358_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_014613051.1\|475375_476431_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_014613052.1\|476732_478397_+\|tRNA	arginine--tRNA ligase	A0A0G2Y3M1	Acanthamoeba_polyphaga_mimivirus	1.7e-66	35.0
WP_157980200.1\|478535_478709_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080556825.1\|478754_478976_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_080556826.1\|478984_479365_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_014613053.1\|480251_483923_+	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_014613054.1\|483912_485469_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	6.8e-22	41.9
WP_014613055.1\|485461_486037_+	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_014613056.1\|486029_486707_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_014613057.1\|486722_487184_+	GAF domain-containing protein	NA	NA	NA	NA
WP_014613058.1\|487183_488218_+	sensor histidine kinase	NA	NA	NA	NA
WP_014613059.1\|488236_488887_+	response regulator transcription factor	NA	NA	NA	NA
WP_014613064.1\|490639_491818_+	NarK/NasA family nitrate transporter	NA	NA	NA	NA
491441:491456	attR	NA	NA	NA	NA
WP_014613065.1\|491931_493530_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_014613066.1\|493713_494070_+	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_014613067.1\|494237_495185_-	lactate dehydrogenase	NA	NA	NA	NA
WP_014613068.1\|495365_496439_+	M42 family metallopeptidase	NA	NA	NA	NA
WP_014613069.1\|496610_497516_+	EamA family transporter	NA	NA	NA	NA
WP_014613070.1\|497870_498206_-	DUF4889 domain-containing protein	NA	NA	NA	NA
WP_014613071.1\|498489_499683_+	MFS transporter	NA	NA	NA	NA
WP_014613072.1\|499768_501862_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014613073.1\|502436_503876_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_014613074.1\|504572_505511_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014613075.1\|505507_505972_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096533529.1\|506382_508038_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_014613077.1\|508340_508544_+	hypothetical protein	NA	NA	NA	NA
WP_014613078.1\|508751_509210_+	DUF2871 domain-containing protein	NA	NA	NA	NA
WP_014613079.1\|509319_510639_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_014613080.1\|510778_511195_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014613081.1\|511215_512244_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014613082.1\|512430_513774_-	sugar porter family MFS transporter	O13311	Aichi_virus	3.1e-23	27.0
WP_014613083.1\|514010_515006_-	acryloyl-CoA reductase	NA	NA	NA	NA
WP_014613084.1\|515137_515656_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014613085.1\|515760_516465_+	hypothetical protein	NA	NA	NA	NA
WP_014613086.1\|516918_518523_+	L-lactate permease	NA	NA	NA	NA
WP_014613087.1\|519187_520396_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.1e-65	39.0

DBSCAN-SWA_2

1028175 : 1049573

Staphylococcus_phage(95.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613578.1\|1028175_1029579_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-135	52.3
WP_014613579.1\|1029581_1030568_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.3e-78	47.6
WP_014613580.1\|1030543_1030795_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.6e-29	70.6
WP_014613581.1\|1030853_1031324_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.1e-39	53.8
WP_041613219.1\|1031304_1032081_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	5.3e-84	61.6
WP_014613583.1\|1032478_1034059_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.2e-241	76.0
WP_014613584.1\|1034522_1035722_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.8e-179	80.3
WP_014613585.1\|1035809_1036721_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.4e-88	68.3
WP_014613586.1\|1036862_1037699_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.0e-112	69.3
WP_014613587.1\|1037800_1038148_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_014613588.1\|1038144_1038510_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.2e-25	51.7
WP_014613589.1\|1038542_1038845_-	hypothetical protein	NA	NA	NA	NA
WP_014613590.1\|1038997_1039708_+	transaldolase	M1PR54	Cyanophage	2.0e-21	39.0
WP_014613591.1\|1039874_1040324_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.0e-10	36.7
WP_014613592.1\|1040326_1040758_-	competence protein ComK	NA	NA	NA	NA
WP_172426177.1\|1040760_1041315_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.0e-20	34.4
WP_014613594.1\|1041446_1041671_+	hypothetical protein	NA	NA	NA	NA
WP_014613595.1\|1041827_1042691_+	glucosaminidase domain-containing protein	A0A1W6JQU5	Staphylococcus_phage	4.2e-37	41.7
WP_014613596.1\|1043079_1044648_+	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.0e-13	60.3
WP_014613597.1\|1045104_1046151_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-106	54.7
WP_014613598.1\|1046155_1046785_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.2e-63	59.5
WP_014613599.1\|1046798_1047980_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.3e-153	66.2
WP_041613220.1\|1047994_1048462_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-51	64.3
WP_014613601.1\|1048586_1049573_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.8e-122	67.0

DBSCAN-SWA_3

1053691 : 1061482

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613607.1\|1053691_1054255_-	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.5e-56	56.8
WP_014613608.1\|1054251_1055205_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-63	80.4
WP_014613609.1\|1055352_1056534_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	4.1e-136	62.0
WP_096533595.1\|1056842_1059257_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	81.8
WP_014613611.1\|1059283_1059595_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.7e-33	69.9
WP_014613612.1\|1060225_1061482_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.3e-31	69.5

DBSCAN-SWA_4

1182685 : 1198784

uncultured_Mediterranean_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172425799.1\|1182685_1183669_+	Holliday junction branch migration DNA helicase RuvB	E3T4M7	Cafeteria_roenbergensis_virus	7.9e-08	29.1
WP_014613721.1\|1183686_1184712_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_014613722.1\|1184729_1185869_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-87	45.5
WP_014613723.1\|1185885_1186149_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.0e-06	42.9
WP_014613724.1\|1186290_1188570_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.2e-28	32.0
WP_014613725.1\|1188686_1190972_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.9e-69	29.5
WP_014613726.1\|1190983_1191502_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.9e-27	48.0
WP_014613727.1\|1191858_1194048_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.0e-10	35.8
WP_014613728.1\|1194060_1194513_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_014613729.1\|1194509_1195385_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	7.0e-08	28.3
WP_014613730.1\|1195746_1197018_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	4.6e-16	24.3
WP_014613731.1\|1197017_1198784_+\|tRNA	aspartate--tRNA ligase	A0A1V0SFI4	Hokovirus	6.0e-06	34.1

DBSCAN-SWA_5

1324075 : 1336412

uncultured_Mediterranean_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014613863.1\|1324075_1324996_-	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	3.4e-05	34.1
WP_014613864.1\|1325075_1325618_+	NUDIX hydrolase	NA	NA	NA	NA
WP_014613865.1\|1325722_1326178_+	transcriptional repressor	NA	NA	NA	NA
WP_014613866.1\|1326217_1327105_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.0e-38	31.2
WP_014613868.1\|1327391_1327898_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_014613869.1\|1327992_1328721_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.2e-10	32.7
WP_014613870.1\|1328710_1329253_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.4e-08	42.9
WP_014613871.1\|1329253_1330000_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_026066968.1\|1330111_1330834_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.4e-46	41.4
WP_014613873.1\|1330820_1332578_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	6.3e-16	22.1
WP_014613874.1\|1332937_1333483_+	ECF transporter S component	NA	NA	NA	NA
WP_014613875.1\|1333745_1333994_-	ferredoxin	A0A127AYY7	Bacillus_phage	2.3e-17	53.3
WP_014613876.1\|1334095_1335043_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014613877.1\|1335035_1336412_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	2.7e-54	34.8

DBSCAN-SWA_6

1761627 : 1770047

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014614272.1\|1761627_1762194_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.8e-28	37.8
WP_014614273.1\|1762193_1763225_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	42.7
WP_014614274.1\|1763228_1764650_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-50	33.4
WP_014614275.1\|1764628_1766818_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.6e-139	40.3
WP_014614276.1\|1766810_1767482_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014614277.1\|1767483_1767744_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014614278.1\|1767746_1768448_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.0e-49	44.2
WP_080556837.1\|1768444_1769617_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_014614280.1\|1769564_1770047_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.9

DBSCAN-SWA_7

1827162 : 1867647

Streptococcus_phage(62.5%)

transposase,integrase,protease

attL 1820672:1820686|attR 1834255:1834269

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1820672:1820686	attL	NA	NA	NA	NA
WP_000410574.1\|1827162_1827528_-\|transposase	transposase	NA	NA	NA	NA
WP_000026851.1\|1827536_1829600_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706213.1\|1829602_1830715_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	1.7e-11	31.6
WP_014614327.1\|1831341_1831944_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014614328.1\|1831950_1832136_-	DUF2187 family protein	NA	NA	NA	NA
WP_014614329.1\|1832323_1833316_+	lipoate--protein ligase	NA	NA	NA	NA
WP_014614330.1\|1833537_1833756_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_014614331.1\|1833992_1834610_+	competence protein ComK	NA	NA	NA	NA
1834255:1834269	attR	NA	NA	NA	NA
WP_037543436.1\|1836819_1837026_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_000284571.1\|1839016_1840621_+\|transposase	IS1182-like element IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.1e-128	44.4
WP_000802831.1\|1841341_1842001_-	RibD family protein	A0A1B0RXM8	Streptococcus_phage	3.1e-125	100.0
WP_072387101.1\|1842111_1842519_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_001079938.1\|1842491_1843064_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
WP_001096887.1\|1843339_1844134_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_000627290.1\|1844226_1844769_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001255866.1\|1844765_1845674_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	E4ZFP8	Streptococcus_phage	2.8e-177	100.0
WP_000662263.1\|1845706_1846441_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_000228166.1\|1846421_1847291_-	nucleotidyltransferase domain-containing protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_000567888.1\|1847393_1847639_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001038792.1\|1848929_1849667_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	7.0e-134	99.2
WP_001814874.1\|1849791_1849875_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_000108743.1\|1850298_1852443_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.3e-268	98.6
WP_001062587.1\|1852442_1853060_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.9e-16	33.5
WP_000713595.1\|1853073_1853244_-	hypothetical protein	NA	NA	NA	NA
WP_075773694.1\|1853590_1854319_-	primase C-terminal domain-containing protein	NA	NA	NA	NA
WP_014614334.1\|1857960_1859475_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_014614335.1\|1859828_1859957_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_014614336.1\|1859976_1861431_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	1.0e-40	28.4
WP_014614337.1\|1861427_1862645_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.6e-18	31.4
WP_014614338.1\|1862657_1862894_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_014614339.1\|1862890_1864033_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_037543467.1\|1864619_1865978_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_014614341.1\|1865994_1867647_-\|protease	serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	1.2e-08	29.9

DBSCAN-SWA_8

2022324 : 2029072

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014614488.1\|2022324_2022822_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	5.2e-16	31.7
WP_014614489.1\|2022918_2023506_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.4e-52	54.7
WP_014614491.1\|2024637_2025582_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.5e-53	39.6
WP_014614492.1\|2025628_2026624_-	YvcK family protein	A1IMD5	Streptococcus_phage	9.0e-52	40.1
WP_014614493.1\|2026625_2027534_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	7.3e-08	33.6
WP_014614494.1\|2028139_2029072_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.2e-83	49.5

DBSCAN-SWA_9

2091970 : 2102793

Streptococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014614542.1\|2091970_2093908_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	W6LM83	Streptococcus_phage	1.6e-105	37.5
WP_014614543.1\|2094252_2095257_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_014614544.1\|2095253_2095937_-	allophanate hydrolase subunit 1	NA	NA	NA	NA
WP_014614545.1\|2095947_2096157_-	hypothetical protein	NA	NA	NA	NA
WP_041613279.1\|2096165_2096780_-	aminotransferase class IV	NA	NA	NA	NA
WP_014614546.1\|2096776_2097925_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	5.6e-29	44.8
WP_014614547.1\|2097908_2098502_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-35	41.4
WP_014614548.1\|2098762_2099431_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.0e-63	55.1
WP_014614549.1\|2099430_2099862_+	6-carboxytetrahydropterin synthase QueD	A0A2H4GYB3	Pseudomonas_phage	8.0e-05	30.7
WP_014614550.1\|2099854_2100568_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.7e-50	41.8
WP_014614551.1\|2100715_2101315_+	hypothetical protein	NA	NA	NA	NA
WP_014614552.1\|2101385_2101640_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_014614553.1\|2101812_2102793_-	glycosyltransferase	A0A192Y8W7	Salmonella_phage	3.2e-65	42.4

DBSCAN-SWA_10

2489580 : 2514523

Streptococcus_phage(84.21%)

integrase

attL 2497765:2497780|attR 2520350:2520365

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000181735.1\|2489580_2491374_+	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8
WP_000421279.1\|2491573_2491888_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
WP_001234191.1\|2491908_2492286_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
WP_000185761.1\|2492295_2493069_+	hypothetical protein	NA	NA	NA	NA
WP_001130244.1\|2493090_2494494_+	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	2.2e-176	66.5
WP_000426689.1\|2494675_2495860_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	6.3e-161	68.1
WP_000055376.1\|2495856_2496147_+	hypothetical protein	NA	NA	NA	NA
WP_001009054.1\|2496143_2496365_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
WP_000675717.1\|2496406_2497186_+	abortive infection family protein	NA	NA	NA	NA
WP_000870467.1\|2497252_2497747_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	2.8e-54	63.4
2497765:2497780	attL	NA	NA	NA	NA
WP_000248477.1\|2497802_2498441_+	hypothetical protein	NA	NA	NA	NA
WP_000723887.1\|2498512_2498908_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	5.9e-47	72.6
WP_014614895.1\|2498891_2501345_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.8
WP_000192393.1\|2501341_2503369_+	membrane protein	A0A1S5SF30	Streptococcus_phage	5.1e-195	65.3
WP_000768373.1\|2503365_2504388_+	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
WP_000584387.1\|2504404_2505334_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
WP_001791010.1\|2505578_2505695_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000691737.1\|2505710_2507630_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
WP_032506803.1\|2507727_2507916_+	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	7.4e-16	61.4
WP_001227350.1\|2507973_2508327_-	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
WP_000804879.1\|2508857_2509280_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	7.5e-48	68.6
WP_000845143.1\|2509276_2509507_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
WP_000633907.1\|2510004_2510205_+	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_000237797.1\|2510231_2511425_+\|integrase	site-specific integrase	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
WP_014614896.1\|2511492_2513034_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_014614897.1\|2513056_2514523_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.1e-97	41.4
2520350:2520365	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage