CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	0 crisprs	csa3,WYL	0	1
NC_016022	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY040, complete sequence	0 crisprs	NA	0	0
NC_016029	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY050, complete sequence	0 crisprs	NA	0	0
NC_016900	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY060, complete sequence	0 crisprs	NA	0	0
NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1 crisprs	csa3	14	1
NC_016028	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY030, complete sequence	0 crisprs	NA	0	0
NC_016027	Komagataeibacter medellinensis NBRC 3288, complete genome	4 crisprs	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,DEDDh,DinG	15	7
NC_016030	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY070, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016021_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016021_1

968-1321

Orphan

Consensus_repeat	Method
NCGGTGCAATCNCCACCC	CRT
CGGTGCAATCGCCACCC	PILER-CR

7 spacers

The CRISPR arrays of NC_016021_1

>merge|NC_016021|1|968-1321|CRT,PILER-CR
GCGGTGCAATCACCACCCTTTGGACAGCGTGTCTCCCGGTTTATCACGGTGCAATCACCACCCTTTTGGGAGCGATTCCGACATCCTCGGTGCGGTGCAATCGCCACCCCTTTGCGTCCGATTCGTCCTCAGAAACAGACGGTGCAATCGCCACCCTTTTTCCAAGCGGATCTCCGCAGGAAAGACGGTGCAATCACCACCCCTTTTATCCGCCTCACAGCCACCAAAAACACGGTGCAATCGCCACCCTTTTTGGAGAAAGGCTCGCCTCTGTGGATAAAAAAGTTATCCCGGTGCAATCGCCACCCGGATGCGGTGCAATCACCACCCCAAAAGACGGTGCAATCGCCACCC

>NC_016021|1|1|968-1321|CRT
GCGGTGCAATCACCACCC	TTTGGACAGCGTGTCTCCCGGTTTATC
ACGGTGCAATCACCACCC	TTTTGGGAGCGATTCCGACATCCTCGGT
GCGGTGCAATCGCCACCC	CTTTGCGTCCGATTCGTCCTCAGAAACAG
ACGGTGCAATCGCCACCC	TTTTTCCAAGCGGATCTCCGCAGGAAAG
ACGGTGCAATCACCACCC	CTTTTATCCGCCTCACAGCCACCAAAAAC
ACGGTGCAATCGCCACCC	TTTTTGGAGAAAGGCTCGCCTCTGTGGATAAAAAAGTTATC
CCGGTGCAATCGCCACCC	GGATGCGGTGCAATCACCACCCCAAAAG
ACGGTGCAATCGCCACCC

>NC_016021|1|1|969-1321|PILER-CR
CGGTGCAATCACCACCC	TTTGGACAGCGTGTCTCCCGGTTTATCA
CGGTGCAATCACCACCC	TTTTGGGAGCGATTCCGACATCCTCGGTG
CGGTGCAATCGCCACCC	CTTTGCGTCCGATTCGTCCTCAGAAACAGA
CGGTGCAATCGCCACCC	TTTTTCCAAGCGGATCTCCGCAGGAAAGA
CGGTGCAATCACCACCC	CTTTTATCCGCCTCACAGCCACCAAAAACA
CGGTGCAATCGCCACCC	TTTTTGGAGAAAGGCTCGCCTCTGTGGATAAAAAAGTTATCC
CGGTGCAATCGCCACCC	GGATGCGGTGCAATCACCACCCCAAAAGA
CGGTGCAATCGCCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016021.1\|WP_007284610.1\|3369_3732_+\|hypothetical-protein	unknown	unknown	unknown
NC_016021.1\|WP_007284448.1\|4504_4828_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|172378
NC_016021.1\|WP_007284446.1\|7543_8230_+\|transporter	unknown	unknown	gnl\|CDD\|369643
NC_016021.1\|WP_007284615.1\|39_945_+\|replication-protein-RepA	unknown	unknown	gnl\|CDD\|309782
NC_016021.1\|WP_007284612.1\|2302_2872_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_016021.1\|WP_010665816.1\|8241_8637_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NC_016021.1\|WP_050796931.1\|3790_4501_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NC_016021.1\|WP_007284447.1\|5154_7527_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|139913
NC_016021.1\|WP_158306040.1\|9640_9811_+\|type-IV-secretion-system-protein-VirB7	unknown	unknown	gnl\|CDD\|172380
NC_016021.1\|WP_007284444.1\|8681_9602_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|139912
NC_016021.1\|WP_010665815.1\|4831_5155_+\|type-IV-secretion-system-protein-VirB3	unknown	unknown	gnl\|CDD\|139914

Protein	Function_ID	Function_description	E-value
NC_016021.1\|WP_007284448.1\|4504_4828_+\|TrbC/VirB2-family-protein	gnl\|CDD\|172378	PRK13857, PRK13857, pilin major subunit VirB2.	4.7214e-20
NC_016021.1\|WP_007284446.1\|7543_8230_+\|transporter	gnl\|CDD\|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	2.04786e-12
NC_016021.1\|WP_007284615.1\|39_945_+\|replication-protein-RepA	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	1.98501e-25
NC_016021.1\|WP_007284612.1\|2302_2872_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.12394e-47
NC_016021.1\|WP_050796931.1\|3790_4501_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	3.6858e-62
NC_016021.1\|WP_007284447.1\|5154_7527_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|139913	PRK13853, PRK13853, type IV secretion system protein VirB4; Provisional.	0
NC_016021.1\|WP_158306040.1\|9640_9811_+\|type-IV-secretion-system-protein-VirB7	gnl\|CDD\|172380	PRK13859, PRK13859, type IV secretion system lipoprotein VirB7; Provisional.	1.44855e-08
NC_016021.1\|WP_007284444.1\|8681_9602_+\|type-IV-secretion-system-protein	gnl\|CDD\|139912	PRK13852, PRK13852, type IV secretion system protein.	6.33295e-49
NC_016021.1\|WP_010665815.1\|4831_5155_+\|type-IV-secretion-system-protein-VirB3	gnl\|CDD\|139914	PRK13854, PRK13854, type IV secretion system protein VirB3; Provisional.	3.76376e-45

>NC_016021.1|WP_007284615.1|39_945_+|replication-protein-RepA
MSKRKSPPEQSELVLSPTTARVIQLSAEIQATPPDDIEFMHTVLCQVGLPRKRTKETRFERNNGKASLLITAGEMYNDGHWEKLFVPYGTKPRLALFHISTEAIRTKSRTVAVGRTISEFMKRLNISQNGPSREAFRAQMNALCACEMKLGYGSRNLNARPVDEFDAWTKNLAKDSTIELSEKFWHELKENAVPLDPRALEGLQHSALALDIYTWLAHRLHRVRGSGERLTWSNLRLQFGQEYTDDKNFKKAFLIALRQVSAVYPDAKLEQVRTGLRLIASPPPVPRQTVVSFQKVIGSEA
>NC_016021.1|WP_007284612.1|2302_2872_+|recombinase-family-protein
MMLIGYARCSRDTQDLAAQRAALATLGVDEDRIYVDFGYSGTKRERPGLDQALAAVRRGDTLVVPKLDRLARSVPDARSIAEMLTSKGAKLAIGSNVYDPTDPMGKMFFNVLATFAEFEVDLVRQRTREGMLIAKQKGKLKGKKPKLSVRQQQELRRMHETGEYSISDLADVFSISRPTVYRTIKRNVE
>NC_016021.1|WP_007284610.1|3369_3732_+|hypothetical-protein
MLEPFELADIKVGLRDGGKILGVFIVARPDSDEGPVFVVYFRADWTQSRTFRILSRFRTEGVRTYKNLGSLYKTIRSIGYDGRITIYPSGDNALHTFVGVLPEDLGDHPADMVTSEGDKE
>NC_016021.1|WP_050796931.1|3790_4501_+|lytic-transglycosylase-domain-containing-protein
MCAQPLAIKDFGQLALKCGPNVAPITLASIAQTESGFDPFLVHDNNTKKAFNLETDAEAAELASRLISIGHSVDLGLMQINSHNLPALGLRVQDAFDPCVSIGAASIILSDTYVGGESHEAQQKALRVTISRYNTGDAQRGFTNGYVGKVEASARKVVPALDVGMGQSGVPAAPQPQQVAVPTDPNAPPVWDVWGSFEYSTASDTKKKGNDPRASDAVLFVQARDGSAVFPQLSKE
>NC_016021.1|WP_007284448.1|4504_4828_+|TrbC/VirB2-family-protein
MLSSSHYVAVRSPRLKAGLVAWVVFLSVLPAVAHAQTVSGGSTPTQMINNICTFILGDFGKSIAVVVLAAAGLMLAFGRLSLGIFAGMVGGILLMFGAAYLGSMVTG
>NC_016021.1|WP_010665815.1|4831_5155_+|type-IV-secretion-system-protein-VirB3
MEKLEEDTLFLAATRPALLAGVPLPVAALLLTMIGLIMVLLQNPLYEAVMVPLWFGSRILVARDYNAVGVVVLFLKTAGRSLDSSLWGGASVSPNPLKVHKRGRGIV
>NC_016021.1|WP_007284447.1|5154_7527_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MFGNPGYGERSGEIYLPYVGHITENVILLRDGSVMAMGYVKGVPFELEDTVVRNGRKRNMNTVLRNISDDNVTITTHMVRHSDVPGLPKTHFRSDFASRLHEDYNRRVLKDRLFRNDYFLSVVVTPRNALGKMGSKLFRVGKGEATEASDATVRQLEDVWQIVSSALDNYSVRRLGLREHDDVVFTEIGEALRLIISARWMPVPVVSGHLGASIYTDRVICGKRGFEVRSLDRSYVGGIFSFREYPAKTRPGMLNALLSVGFPLVVSQSFGFLTRSQADEKLTLKGNQMVSAGDKATSQIDQLTDAVDKLISNEFVFGSHHLSLAVYADTLAQLGDNAARARARLTDAGAVVVQEGIGLEAAFWSQLPGNWEYRTRPGAINSNNFACFSTFDNFPAGAREGHWGTAIARFRTDGATSYDYVPHVKDVGMTAIFGPIGSGKTTLLTFIMAMMEQALSEVNGAVVFFDKDRGGQLLVLATGGTYLVLKRGVSCGLAPLRGLTNTPEDREFLRQWLTGLIESDGKDTVSSEDAKRLQRGIERQMSYPVEMRSLAGLRQFLMHGPEEGAGARLERWCRGGALGWLFDGETDEVDLSSAITGFDLTAFLDHDEICAPTAAYLLYRIEKVVDGRRFLMSCDEFRAYLLDPKFAAVIDKFLLTVRKNNGMLILATQQPEHVLESKLGSSLVAQCMTKILYPSPTADRHAYITGLSCTEGEYRAVREGMVGDPKRFLMKRENGSVICEFDLSSMPEYIAVLSGRANRANFAERLRAEYGADPSQWLDHFMARYHEAKD
>NC_016021.1|WP_007284446.1|7543_8230_+|transporter
MKAYSLVAVVWFSLIGADAAHAQVAVFDNASIAQSVTNTTNEINQMMDELKQLQAQYQLLQNIPNVATGMLTTFNSANLQNPLPTVTQATGQITGATNTLNSYGQSFMSLNRYSATGTDPVAQSYQQRETSLANIQGIAAQNLDSINQRLASLDEMKQELSNAKDITQVSTINGRIAVENQAIQAQAAAAQNLQTLSMAQIRNQELQEQEAARKDDEATAAYFPAAIQ
>NC_016021.1|WP_010665816.1|8241_8637_+|EexN-family-lipoprotein
MNGYKTLVVASLGVLASGVASAHPLPNAAEHTVEWYSSHAAERRQVNRECMNDRTYENYPDCRNAVAAETGAEAPAQPATDDMTQPGYYVDKRQRDIVLALCGVNHPPPAAVCSAARNAASAANKKGSGRQ
>NC_016021.1|WP_007284444.1|8681_9602_+|type-IV-secretion-system-protein
MTTPFEDFDTSLRTAFSTGTSNVISQGLSAVASPFTALIVLWVIVQGVLVMRGDLDARRGISRIIRVTLVSAFILEAGIYNGYVVNLFQTVLPTWAASSVSSSTASTPKLLDDIWNSLVNYSATIDKQLHWFQVVDLIELAMIAIADGAMLTIAFAIYICSSLMTAVILSLGPFVIAGFLFDATRNISERWIGKLVGLALLSLLVDVTMIIVATGIRTYMLACNLNAVSAAGTPGIAIQIMEQTAMFIAVSTFILISLPAAAAFIGGGVSLNPAGAILNTIIGGATGGVGTVAKAGANIGRKSSNK
>NC_016021.1|WP_158306040.1|9640_9811_+|type-IV-secretion-system-protein-VirB7
MAKIRISISVLMLSVLSACASHDPVPKCKGPTFALNSGHWKPTEADLKKPKEIGHK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016021_1	1.1\|986\|27\|NC_016021\|CRT	986-1012	27	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	986-1012	0	1.0
NC_016021_1	1.1\|986\|27\|NC_016021\|CRT	986-1012	27	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4383-4409	0	1.0
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1031-1058	0	1.0
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4337-4364	0	1.0
NC_016021_1	1.3\|1077\|29\|NC_016021\|CRT	1077-1105	29	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1077-1105	0	1.0
NC_016021_1	1.4\|1124\|28\|NC_016021\|CRT	1124-1151	28	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1124-1151	0	1.0
NC_016021_1	1.4\|1124\|28\|NC_016021\|CRT	1124-1151	28	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4244-4271	0	1.0
NC_016021_1	1.5\|1170\|29\|NC_016021\|CRT	1170-1198	29	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1170-1198	0	1.0
NC_016021_1	1.6\|1217\|41\|NC_016021\|CRT	1217-1257	41	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1217-1257	0	1.0
NC_016021_1	1.6\|1217\|41\|NC_016021\|CRT	1217-1257	41	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4185-4225	0	1.0
NC_016021_1	1.7\|1276\|28\|NC_016021\|CRT	1276-1303	28	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1276-1303	0	1.0
NC_016021_1	1.7\|1276\|28\|NC_016021\|CRT	1276-1303	28	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4139-4166	0	1.0
NC_016021_1	1.8\|986\|28\|NC_016021\|PILER-CR	986-1013	28	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	986-1013	0	1.0
NC_016021_1	1.8\|986\|28\|NC_016021\|PILER-CR	986-1013	28	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4382-4409	0	1.0
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1031-1059	0	1.0
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4336-4364	0	1.0
NC_016021_1	1.10\|1077\|30\|NC_016021\|PILER-CR	1077-1106	30	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1077-1106	0	1.0
NC_016021_1	1.11\|1124\|29\|NC_016021\|PILER-CR	1124-1152	29	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4243-4271	0	1.0
NC_016021_1	1.11\|1124\|29\|NC_016021\|PILER-CR	1124-1152	29	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1124-1152	0	1.0
NC_016021_1	1.12\|1170\|30\|NC_016021\|PILER-CR	1170-1199	30	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1170-1199	0	1.0
NC_016021_1	1.13\|1217\|42\|NC_016021\|PILER-CR	1217-1258	42	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1217-1258	0	1.0
NC_016021_1	1.13\|1217\|42\|NC_016021\|PILER-CR	1217-1258	42	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4184-4225	0	1.0
NC_016021_1	1.14\|1276\|29\|NC_016021\|PILER-CR	1276-1304	29	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4138-4166	0	1.0
NC_016021_1	1.14\|1276\|29\|NC_016021\|PILER-CR	1276-1304	29	NC_016021	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence	1276-1304	0	1.0
NC_016021_1	1.3\|1077\|29\|NC_016021\|CRT	1077-1105	29	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4290-4318	1	0.966
NC_016021_1	1.10\|1077\|30\|NC_016021\|PILER-CR	1077-1106	30	NZ_LN606601	Acetobacter senegalensis strain 108B plasmid 1P, complete sequence	4289-4318	1	0.967
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	MW149111	Microvirus sp. isolate gila25, complete genome	3385-3413	5	0.828
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	MW149113	Microvirus sp. isolate gila30, complete genome	3390-3418	5	0.828
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	MW149112	Microvirus sp. isolate gila24, complete genome	3389-3417	5	0.828
NC_016021_1	1.9\|1031\|29\|NC_016021\|PILER-CR	1031-1059	29	MW149110	Microvirus sp. isolate gila31, complete genome	3384-3412	5	0.828
NC_016021_1	1.1\|986\|27\|NC_016021\|CRT	986-1012	27	MK560763	Virgibacillus phage Mimir87, complete genome	22357-22383	6	0.778
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	MW149111	Microvirus sp. isolate gila25, complete genome	3386-3413	6	0.786
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	MW149113	Microvirus sp. isolate gila30, complete genome	3391-3418	6	0.786
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	MW149112	Microvirus sp. isolate gila24, complete genome	3390-3417	6	0.786
NC_016021_1	1.2\|1031\|28\|NC_016021\|CRT	1031-1058	28	MW149110	Microvirus sp. isolate gila31, complete genome	3385-3412	6	0.786
NC_016021_1	1.8\|986\|28\|NC_016021\|PILER-CR	986-1013	28	MK560763	Virgibacillus phage Mimir87, complete genome	22356-22383	6	0.786

1. spacer 1.1|986|27|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttggacagcgtgtctcccggtttatc	CRISPR spacer
tttggacagcgtgtctcccggtttatc	Protospacer
***************************

2. spacer 1.1|986|27|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttggacagcgtgtctcccggtttatc	CRISPR spacer
tttggacagcgtgtctcccggtttatc	Protospacer
***************************

3. spacer 1.2|1031|28|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgacatcctcggt	Protospacer
****************************

4. spacer 1.2|1031|28|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgacatcctcggt	Protospacer
****************************

5. spacer 1.3|1077|29|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ctttgcgtccgattcgtcctcagaaacag	CRISPR spacer
ctttgcgtccgattcgtcctcagaaacag	Protospacer
*****************************

6. spacer 1.4|1124|28|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttttccaagcggatctccgcaggaaag	CRISPR spacer
tttttccaagcggatctccgcaggaaag	Protospacer
****************************

7. spacer 1.4|1124|28|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttttccaagcggatctccgcaggaaag	CRISPR spacer
tttttccaagcggatctccgcaggaaag	Protospacer
****************************

8. spacer 1.5|1170|29|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

cttttatccgcctcacagccaccaaaaac	CRISPR spacer
cttttatccgcctcacagccaccaaaaac	Protospacer
*****************************

9. spacer 1.6|1217|41|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttttggagaaaggctcgcctctgtggataaaaaagttatc	CRISPR spacer
tttttggagaaaggctcgcctctgtggataaaaaagttatc	Protospacer
*****************************************

10. spacer 1.6|1217|41|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttttggagaaaggctcgcctctgtggataaaaaagttatc	CRISPR spacer
tttttggagaaaggctcgcctctgtggataaaaaagttatc	Protospacer
*****************************************

11. spacer 1.7|1276|28|NC_016021|CRT matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ggatgcggtgcaatcaccaccccaaaag	CRISPR spacer
ggatgcggtgcaatcaccaccccaaaag	Protospacer
****************************

12. spacer 1.7|1276|28|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggatgcggtgcaatcaccaccccaaaag	CRISPR spacer
ggatgcggtgcaatcaccaccccaaaag	Protospacer
****************************

13. spacer 1.8|986|28|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttggacagcgtgtctcccggtttatca	CRISPR spacer
tttggacagcgtgtctcccggtttatca	Protospacer
****************************

14. spacer 1.8|986|28|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttggacagcgtgtctcccggtttatca	CRISPR spacer
tttggacagcgtgtctcccggtttatca	Protospacer
****************************

15. spacer 1.9|1031|29|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgggagcgattccgacatcctcggtg	CRISPR spacer
ttttgggagcgattccgacatcctcggtg	Protospacer
*****************************

16. spacer 1.9|1031|29|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgggagcgattccgacatcctcggtg	CRISPR spacer
ttttgggagcgattccgacatcctcggtg	Protospacer
*****************************

17. spacer 1.10|1077|30|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ctttgcgtccgattcgtcctcagaaacaga	CRISPR spacer
ctttgcgtccgattcgtcctcagaaacaga	Protospacer
******************************

18. spacer 1.11|1124|29|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttttccaagcggatctccgcaggaaaga	CRISPR spacer
tttttccaagcggatctccgcaggaaaga	Protospacer
*****************************

19. spacer 1.11|1124|29|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttttccaagcggatctccgcaggaaaga	CRISPR spacer
tttttccaagcggatctccgcaggaaaga	Protospacer
*****************************

20. spacer 1.12|1170|30|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

cttttatccgcctcacagccaccaaaaaca	CRISPR spacer
cttttatccgcctcacagccaccaaaaaca	Protospacer
******************************

21. spacer 1.13|1217|42|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

tttttggagaaaggctcgcctctgtggataaaaaagttatcc	CRISPR spacer
tttttggagaaaggctcgcctctgtggataaaaaagttatcc	Protospacer
******************************************

22. spacer 1.13|1217|42|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

tttttggagaaaggctcgcctctgtggataaaaaagttatcc	CRISPR spacer
tttttggagaaaggctcgcctctgtggataaaaaagttatcc	Protospacer
******************************************

23. spacer 1.14|1276|29|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggatgcggtgcaatcaccaccccaaaaga	CRISPR spacer
ggatgcggtgcaatcaccaccccaaaaga	Protospacer
*****************************

24. spacer 1.14|1276|29|NC_016021|PILER-CR matches to NC_016021 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY020, complete sequence) position: , mismatch: 0, identity: 1.0

ggatgcggtgcaatcaccaccccaaaaga	CRISPR spacer
ggatgcggtgcaatcaccaccccaaaaga	Protospacer
*****************************

25. spacer 1.3|1077|29|NC_016021|CRT matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 1, identity: 0.966

ctttgcgtccgattcgtcctcagaaacag	CRISPR spacer
ctttgcgtccgattcgccctcagaaacag	Protospacer
****************.************

26. spacer 1.10|1077|30|NC_016021|PILER-CR matches to NZ_LN606601 (Acetobacter senegalensis strain 108B plasmid 1P, complete sequence) position: , mismatch: 1, identity: 0.967

ctttgcgtccgattcgtcctcagaaacaga	CRISPR spacer
ctttgcgtccgattcgccctcagaaacaga	Protospacer
****************.*************

27. spacer 1.9|1031|29|NC_016021|PILER-CR matches to MW149111 (Microvirus sp. isolate gila25, complete genome) position: , mismatch: 5, identity: 0.828

ttttgggagcgattccgacatc-ctcggtg	CRISPR spacer
ttttgggagcgattccgaaatcgttccat-	Protospacer
****************** *** .** .*

28. spacer 1.9|1031|29|NC_016021|PILER-CR matches to MW149113 (Microvirus sp. isolate gila30, complete genome) position: , mismatch: 5, identity: 0.828

ttttgggagcgattccgacatc-ctcggtg	CRISPR spacer
ttttgggagcgattccgaaatcgttccat-	Protospacer
****************** *** .** .*

29. spacer 1.9|1031|29|NC_016021|PILER-CR matches to MW149112 (Microvirus sp. isolate gila24, complete genome) position: , mismatch: 5, identity: 0.828

ttttgggagcgattccgacatc-ctcggtg	CRISPR spacer
ttttgggagcgattccgaaatcgttccat-	Protospacer
****************** *** .** .*

30. spacer 1.9|1031|29|NC_016021|PILER-CR matches to MW149110 (Microvirus sp. isolate gila31, complete genome) position: , mismatch: 5, identity: 0.828

ttttgggagcgattccgacatc-ctcggtg	CRISPR spacer
ttttgggagcgattccgaaatcgttccat-	Protospacer
****************** *** .** .*

31. spacer 1.1|986|27|NC_016021|CRT matches to MK560763 (Virgibacillus phage Mimir87, complete genome) position: , mismatch: 6, identity: 0.778

tttggacagcgtgtctcccggtttatc	CRISPR spacer
agctgacagcgtgtctcccgatttaac	Protospacer
  . ****************.**** *

32. spacer 1.2|1031|28|NC_016021|CRT matches to MW149111 (Microvirus sp. isolate gila25, complete genome) position: , mismatch: 6, identity: 0.786

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgaaatcgttcca	Protospacer
****************** *** *.

33. spacer 1.2|1031|28|NC_016021|CRT matches to MW149113 (Microvirus sp. isolate gila30, complete genome) position: , mismatch: 6, identity: 0.786

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgaaatcgttcca	Protospacer
****************** *** *.

34. spacer 1.2|1031|28|NC_016021|CRT matches to MW149112 (Microvirus sp. isolate gila24, complete genome) position: , mismatch: 6, identity: 0.786

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgaaatcgttcca	Protospacer
****************** *** *.

35. spacer 1.2|1031|28|NC_016021|CRT matches to MW149110 (Microvirus sp. isolate gila31, complete genome) position: , mismatch: 6, identity: 0.786

ttttgggagcgattccgacatcctcggt	CRISPR spacer
ttttgggagcgattccgaaatcgttcca	Protospacer
****************** *** *.

36. spacer 1.8|986|28|NC_016021|PILER-CR matches to MK560763 (Virgibacillus phage Mimir87, complete genome) position: , mismatch: 6, identity: 0.786

tttggacagcgtgtctcccggtttatca	CRISPR spacer
agctgacagcgtgtctcccgatttaaca	Protospacer
  . ****************.**** **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21307 : 58368

Streptococcus_phage(18.18%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010511145.1\|21307_22339_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041247961.1\|22809_23769_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_110914815.1\|24364_25551_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-22	28.4
WP_014095376.1\|26579_28502_+	potassium transporter Kup	M1I6H8	Paramecium_bursaria_Chlorella_virus	1.5e-74	32.9
WP_014095377.1\|28700_29480_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.4e-31	35.8
WP_041247965.1\|30032_31055_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.9e-22	32.7
WP_014095380.1\|31316_32702_-\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	3.2e-31	29.0
WP_014095381.1\|32759_33647_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_012813131.1\|33989_34439_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_012813132.1\|34475_35798_-	porin	NA	NA	NA	NA
WP_041247966.1\|36073_36163_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA
WP_014095382.1\|36165_37872_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_014095383.1\|37886_39995_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	2.8e-34	30.3
WP_167537206.1\|40014_40629_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_014095385.1\|40628_43316_+	sensor histidine kinase KdpD	Q8QNA2	Ectocarpus_siliculosus_virus	2.8e-07	23.5
WP_012813137.1\|43312_43996_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.3e-24	30.8
WP_012813329.1\|44299_44869_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010512305.1\|45008_45623_-	recombinase family protein	E5FFF9	Burkholderia_phage	2.1e-38	49.7
WP_041247968.1\|45748_48640_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.7e-188	37.9
WP_014095387.1\|49156_52819_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_007284568.1\|52818_53139_-	hypothetical protein	NA	NA	NA	NA
WP_007284570.1\|54041_54941_+	hypothetical protein	NA	NA	NA	NA
WP_007284571.1\|54928_55588_+	hypothetical protein	NA	NA	NA	NA
WP_041247969.1\|55632_55860_+	hypothetical protein	NA	NA	NA	NA
WP_070097778.1\|55824_56397_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_148268692.1\|56440_57214_-	Fic family protein	NA	NA	NA	NA
WP_087652208.1\|57158_58368_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.9e-96	63.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_016037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

104474 : 249350

111

uncultured_Caudovirales_phage(21.05%)

integrase,transposase

attL 171842:171901|attR 233934:234802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007397838.1\|104474_106085_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_010510701.1\|106148_106496_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.3e-25	51.4
WP_007400224.1\|106492_106852_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	1.0e-05	42.3
WP_014106856.1\|107201_108113_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014106857.1\|108303_109701_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_007396728.1\|110154_110841_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.5e-26	35.2
WP_007396730.1\|111272_111980_-	VIT family protein	NA	NA	NA	NA
WP_007396731.1\|111969_112551_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_014106858.1\|112797_113292_-	hypothetical protein	NA	NA	NA	NA
WP_023524216.1\|113861_115403_+	carbohydrate porin	NA	NA	NA	NA
WP_010509921.1\|117022_118624_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_007396744.1\|119252_119951_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	9.1e-83	68.9
WP_174520959.1\|119971_121270_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.3e-132	59.9
WP_014106862.1\|121266_121689_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	8.8e-49	67.9
WP_014106863.1\|121685_122039_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023524214.1\|122162_122564_+	RcnB family protein	NA	NA	NA	NA
WP_102325815.1\|123130_123898_+	ATP-binding cassette domain-containing protein	A0A2I4R674	Erysipelothrix_phage	2.1e-08	28.7
WP_014106867.1\|123894_124704_+	ABC transporter permease	NA	NA	NA	NA
WP_041247918.1\|124925_126005_-	hypothetical protein	NA	NA	NA	NA
WP_014106869.1\|126045_126954_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_023524212.1\|126973_127858_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_014106874.1\|130917_133212_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_014106875.1\|133325_134216_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014106876.1\|135791_136307_+	hypothetical protein	NA	NA	NA	NA
WP_014106877.1\|136287_136773_+	hypothetical protein	NA	NA	NA	NA
WP_014106880.1\|137542_138061_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_014106881.1\|138131_139220_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_014106882.1\|139227_140310_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
WP_014106883.1\|140652_141411_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.2e-13	27.8
WP_014106884.1\|141407_142415_-	iron ABC transporter permease	NA	NA	NA	NA
WP_014106885.1\|142411_143251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010516556.1\|143252_145352_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007396790.1\|146291_146759_+	hypothetical protein	NA	NA	NA	NA
WP_014106887.1\|146763_148218_+	cobyric acid synthase	NA	NA	NA	NA
WP_148268689.1\|148779_149965_+\|transposase	IS3-like element ISGxy1 family transposase	Q716C2	Shigella_phage	4.9e-28	31.8
WP_014106890.1\|150273_151182_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
WP_110914778.1\|151695_153054_-	carbohydrate porin	NA	NA	NA	NA
WP_023524197.1\|154050_154263_+	CbtB-domain containing protein	NA	NA	NA	NA
WP_070097777.1\|154276_155059_+	CbtA family protein	NA	NA	NA	NA
WP_014106893.1\|155573_156161_-	DUF1826 domain-containing protein	NA	NA	NA	NA
WP_014106894.1\|156229_157462_+	GTP-binding protein	NA	NA	NA	NA
WP_014106895.1\|157454_157787_+	hypothetical protein	NA	NA	NA	NA
WP_023524194.1\|157901_159236_-	hypothetical protein	Q8W6C3	Saccharomonospora_phage	3.9e-18	24.8
WP_014106897.1\|159586_162520_-\|transposase	IS110 family transposase	A0A0K1Y8T6	Streptomyces_phage	2.1e-64	28.7
WP_193360695.1\|162516_163947_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_014106901.1\|165645_170859_+	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	5.4e-39	24.1
WP_041247921.1\|171136_171691_+	hypothetical protein	NA	NA	NA	NA
171842:171901	attL	NA	NA	NA	NA
WP_014106903.1\|171890_172700_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_148268690.1\|172582_173170_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_014106905.1\|173458_174235_-	hypothetical protein	NA	NA	NA	NA
WP_014106906.1\|174224_175562_-\|transposase	transposase	NA	NA	NA	NA
WP_014106907.1\|175996_177442_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014106908.1\|177780_178179_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014106909.1\|178252_178903_+	cation transporter	NA	NA	NA	NA
WP_014106910.1\|178895_180338_+	TolC family protein	NA	NA	NA	NA
WP_014106911.1\|180334_181369_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014106912.1\|181368_184503_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.0e-61	22.9
WP_110914815.1\|184622_185809_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-22	28.4
WP_014106913.1\|186118_187207_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_041247923.1\|187210_187780_-	hydrolase	NA	NA	NA	NA
WP_014106915.1\|187896_188526_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014106916.1\|188658_189552_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_041247943.1\|190506_191445_+	plasmid replication initiator	NA	NA	NA	NA
WP_007400691.1\|192777_193476_-	hypothetical protein	NA	NA	NA	NA
WP_081477947.1\|194421_194616_+	hypothetical protein	NA	NA	NA	NA
WP_014106919.1\|195002_196448_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_110914585.1\|196572_197463_+	ketopantoate reductase family protein	NA	NA	NA	NA
WP_014106921.1\|197775_198849_-	alkene reductase	NA	NA	NA	NA
WP_081477948.1\|199741_199891_-	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_014106923.1\|199877_200897_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_014106924.1\|200899_202333_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_014106925.1\|202611_204384_-	AMP-binding protein	A0A2K9KZV5	Tupanvirus	8.4e-08	24.1
WP_014106926.1\|204399_205647_-	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_019091908.1\|205663_205951_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA
WP_014106928.1\|205938_207117_-	MSMEG_0565 family glycosyltransferase	NA	NA	NA	NA
WP_014106929.1\|207113_208088_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA
WP_023524185.1\|208084_208648_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014106931.1\|208647_209754_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA
WP_014106932.1\|209750_210725_-	Nit6803 family nitriliase	NA	NA	NA	NA
WP_010512510.1\|210749_211232_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA
WP_014106934.1\|211572_212976_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_193360696.1\|213130_214213_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014106936.1\|214725_215448_-	TonB family protein	NA	NA	NA	NA
WP_041247944.1\|215579_216014_+	DUF2946 family protein	NA	NA	NA	NA
WP_014106938.1\|216081_218238_+	TonB-dependent receptor	NA	NA	NA	NA
WP_193360697.1\|219511_220594_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014106942.1\|222366_222912_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010512019.1\|223000_223222_+	hypothetical protein	NA	NA	NA	NA
WP_014106943.1\|223218_223797_+	zeta toxin family protein	NA	NA	NA	NA
WP_010512024.1\|225967_226423_+	hypothetical protein	NA	NA	NA	NA
WP_012812328.1\|226437_227688_+\|transposase	IS701-like element IS1452 family transposase	NA	NA	NA	NA
WP_110914731.1\|227867_228633_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.0e-11	39.7
WP_014106948.1\|229477_230755_-	hypothetical protein	NA	NA	NA	NA
WP_014106949.1\|230912_232175_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.2e-30	38.1
WP_014106903.1\|233134_233944_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010512344.1\|235810_236176_+	DUF488 family protein	NA	NA	NA	NA
233934:234802	attR	NA	NA	NA	NA
WP_014106953.1\|236237_236627_+	PAS domain S-box protein	NA	NA	NA	NA
WP_023524174.1\|236623_236896_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_010512346.1\|236909_237125_-	DUF2945 domain-containing protein	NA	NA	NA	NA
WP_010512347.1\|237160_237739_+	DUF488 domain-containing protein	A0A2K9L455	Tupanvirus	5.1e-23	40.0
WP_193360696.1\|237987_239070_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010512257.1\|239161_239791_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014106954.1\|239911_241891_-	oleate hydratase	NA	NA	NA	NA
WP_014106955.1\|242099_242996_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014106956.1\|243094_243913_+	pirin family protein	NA	NA	NA	NA
WP_014106935.1\|244106_245186_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014106957.1\|245276_245570_-\|transposase	transposase	NA	NA	NA	NA
WP_014106958.1\|245656_247027_-	hypothetical protein	NA	NA	NA	NA
WP_023524172.1\|247397_247580_+\|transposase	transposase	NA	NA	NA	NA
WP_148268691.1\|247822_248272_-	HNH endonuclease	NA	NA	NA	NA
WP_193360696.1\|248267_249350_+\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_016027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016027_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016027_1

883982-884437

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCACGCGCGGGGATGAACCG	PILER-CR
GTGTTCCCCGCACGCGCGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGCACGCGCGGGGATGAACCG	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NC_016027_1

>merge|NC_016027|1|883982-884437|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCACGCGCGGGGATGAACCGATCACCGTTCTTGATTCGCCGCTGACCTCTGGGTGTTCCCCGCACGCGCGGGGATGAACCGCGGGGATATGCCTGTATCTGGTGCAGAACAGGGTGTTCCCCGCACGCGCGGGGATGAACCGGTGTTATCCTTCAGGATGCGGCAATCACGCCAGTGTTCCCCGCACGCGCGGGGATGAACCGGCCGACAACGCGGCCATCCAGGCATCGTGAGCGTGTTCCCCGCACGCGCGGGGATGAACCGCCTGCTTGCGGGCATGATAGGCGTCAAGGCGCGTGTTCCCCGCACGCGCGGGGATGAACCGTTCAGGCGACCGCAAAGAAGCAGGCAGAAGAAGTGTTCCCCGCATGCGCGGGGATGAACCGTAATCCACAATGTCCGGGTCGTTCTCAAAGGCGTGTTCCCCGCACACGCGGGGATAAACCT

>NC_016027|1|1|883982-884376|PILER-CR
GTGTTCCCCGCACGCGCGGGGATGAACCG	ATCACCGTTCTTGATTCGCCGCTGACCTCTGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	CGGGGATATGCCTGTATCTGGTGCAGAACAGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	GTGTTATCCTTCAGGATGCGGCAATCACGCCA
GTGTTCCCCGCACGCGCGGGGATGAACCG	GCCGACAACGCGGCCATCCAGGCATCGTGAGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	CCTGCTTGCGGGCATGATAGGCGTCAAGGCGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	TTCAGGCGACCGCAAAGAAGCAGGCAGAAGAA
GTGTTCCCCGCATGCGCGGGGATGAACCG

>NC_016027|1|1|883982-884437|CRISPRCasFinder
GTGTTCCCCGCACGCGCGGGGATGAACCG	ATCACCGTTCTTGATTCGCCGCTGACCTCTGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	CGGGGATATGCCTGTATCTGGTGCAGAACAGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	GTGTTATCCTTCAGGATGCGGCAATCACGCCA
GTGTTCCCCGCACGCGCGGGGATGAACCG	GCCGACAACGCGGCCATCCAGGCATCGTGAGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	CCTGCTTGCGGGCATGATAGGCGTCAAGGCGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	TTCAGGCGACCGCAAAGAAGCAGGCAGAAGAA
GTGTTCCCCGCATGCGCGGGGATGAACCG	TAATCCACAATGTCCGGGTCGTTCTCAAAGGC
GTGTTCCCCGCACACGCGGGGATAAACCT

>NC_016027|1|1|883982-884437|CRT
GTGTTCCCCGCACGCGCGGGGATGAACCG	ATCACCGTTCTTGATTCGCCGCTGACCTCTGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	CGGGGATATGCCTGTATCTGGTGCAGAACAGG
GTGTTCCCCGCACGCGCGGGGATGAACCG	GTGTTATCCTTCAGGATGCGGCAATCACGCCA
GTGTTCCCCGCACGCGCGGGGATGAACCG	GCCGACAACGCGGCCATCCAGGCATCGTGAGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	CCTGCTTGCGGGCATGATAGGCGTCAAGGCGC
GTGTTCCCCGCACGCGCGGGGATGAACCG	TTCAGGCGACCGCAAAGAAGCAGGCAGAAGAA
GTGTTCCCCGCATGCGCGGGGATGAACCG	TAATCCACAATGTCCGGGTCGTTCTCAAAGGC
GTGTTCCCCGCACACGCGGGGATAAACCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_016027.1\|WP_014104755.1\|885039_887439_-\|recombinase	unknown	unknown	gnl\|CDD\|274169
NC_016027.1\|WP_081477923.1\|869812_871801_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372652
NC_016027.1\|WP_014104750.1\|877331_878507_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_016027.1\|WP_148268627.1\|878753_880844_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NC_016027.1\|WP_014104745.1\|872004_872748_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_016027.1\|WP_041247614.1\|881073_882753_-\|porin	unknown	unknown	gnl\|CDD\|369347
NC_016027.1\|WP_041247165.1\|889598_889808_+\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014104746.1\|872785_873100_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NC_016027.1\|WP_014104749.1\|876175_877276_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_016027.1\|WP_014104747.1\|873228_874878_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_016027.1\|WP_014104748.1\|874874_875723_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_016027.1\|WP_014104753.1\|883143_883761_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	3.829e-30
NC_016027.1\|WP_014104755.1\|885039_887439_-\|recombinase	gnl\|CDD\|274169	TIGR02505, RTPR, ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.04836e-47
NC_016027.1\|WP_081477923.1\|869812_871801_-\|peptidylprolyl-isomerase	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	1.54484e-34
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.76804e-106
NC_016027.1\|WP_148268627.1\|878753_880844_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	5.42362e-122
NC_016027.1\|WP_014104745.1\|872004_872748_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.77144e-117
NC_016027.1\|WP_041247614.1\|881073_882753_-\|porin	gnl\|CDD\|369347	pfam07396, Porin_O_P, Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.	1.47806e-24
NC_016027.1\|WP_014104746.1\|872785_873100_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	1.87601e-14
NC_016027.1\|WP_014104749.1\|876175_877276_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.56363e-39
NC_016027.1\|WP_014104747.1\|873228_874878_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_016027.1\|WP_014104748.1\|874874_875723_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.02803e-114
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.03021e-12
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.78855e-130
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.24955e-56
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	6.08637e-86
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.27296e-45

>NC_016027.1|WP_014104753.1|883143_883761_-|hypothetical-protein
MSQTWGDFQAVVQLSAGLNVAILSFVDISLPAIKERRRVFAKAQQELGMYRTAPSRLVSAQQLEHDCQVEEMNQKLYLLWQESTDYANEEDTLVHYTGVMGFFGAVLSLVLLWYSAEYYDTPIGGLGQAVIALSFCSLVVAFIINFMTASQSAVFTQKCNAIRQQARQNLTPQAGVPTKPATPVATPVATPVAAPVAAPAASTGA
>NC_016027.1|WP_041247614.1|881073_882753_-|porin
MIRRPVVSLLLGSSALLGLSSFHQAHADAASDAQIKALQVEMQAMRRDMSSQISVLRQRLVRAESVRGNSVAANAAQARRVAASHGQPLPDSYARDIHIGGDSGMGGSLSSAMQRADLGTPPSDRGVSSSWASFRAATEKEEALHMGGMVVGFPGGRPTISSEDGMYAMSIGLAFHEDIGGFMGMSPRRGETKGDYEGLTENARRLRIPISFRYKNWIANITPDFGSGSADGTSTSQLYEANLNYAGFNHTVITAGYFQPRVTEEDSESSNEFELMERPAITDIVRNIAAGDARMSLGALHYAKRWWIAGYVTGQTYGKRATYDSQSGATFRVAGRPYMSKDIDVHIGLSAITAFKVAQAKASDDRSYNFSEAPEVNLTTTKLLSATVGNVGSIWSAGPELGFRWKRLTLKGEYYNIGVTRGDNGGNSAANNATVNFTGYYGAANYTIFGKGRSYNIKEGAFAAPGVEHAFDPSHGYWGALEMTARYSVADLNANLGNASTALRGGQQTVWSAGLNWYPNRHFRFMLDFNHFIVSRNSVAANILGREGNSVAGRIQAAF
>NC_016027.1|WP_148268627.1|878753_880844_-|EAL-domain-containing-protein
MGDIARPGPVIPPDALGERLFEFFHNDAELMLVAVVNDDNVPVGLVERQAFFLRVSGKFGHALFNRRPVALLMDDSPVVIDAAVSSSDFTALTLMSQPSDLLRGYIVTRDGRYLGTGSALDLINASHSHAVASAASLKEAAEELRRANRKISRDKLFIDTIVENIPSALIVRSLRHEHLVLVNRAAEAMTGCRRDLLVERNVDDVFTSDEIGHLLVSRFAGGGQGVIEKVLCDHTGARRAISTRQVTIADERGAPRWELCVADDVTEQRDAQHQVELLAHYDPLTGLANRALFSSRLEAACVPGGTATLLCIDLDYFKTVNDVYGHAAGDSLLQLVSERLRACSRPEDLVARLGGDEFAIIWPTVPAPVELTARAREIVETVSRPYVIDGHHIVIGASVGSALYPRDADASENLLQYADIALYRAKSLGRNGFQFFDEELRDEIQTRARLGSELRGAIAGNGLTLHFQPLYSMPGNRLSACEALVRWHHPTQGMIPPDQFVGLAEENGLIHDLGEWVLRTACNEAADWPAQVKVAVNVSPIQLRNPRFIRIVEEALAQSGLPPERLEIEITENIFVQNSATNREILQKLGRIGCSIVLDDFGTGYSSLGYLRSFQFQKIKIDRSFVQELPERGAAGIIRAIISLAQSMDIPITAEGVETQDQWAHLNDLGCNQVQGFLLGRPQPADMIRQAILTHA
>NC_016027.1|WP_014104750.1|877331_878507_-|hypothetical-protein
MTTPHLQIGFLFNHDCTHQIAHTAPIICELVALGQDVTVVTSCDTQEQQVKKIIAGCAARVRFVHIDINRISRAINTVAGAVLPFRRIANLRDNLGLFAGFDALVVPETTSALLKSHFNLDVRLIYLPHGAGDRSIGFRDVTRFFDFVLLPGAKTRERMVRRKLVRPGHHAVIGYPKFDTIDMAARPRFFGNDRPTVLYNPHFDPILSSWWDMGMAVLEWFARQDEYNLIFAPHVMLFRRRLHTSVEHRRIRYRWSIPERLRNLSHILIDTGSTRSVDMSYVLAADIYLGDASSQVYEWICNPRPCIFLNSHNARWQDNPSYTHWNMGQVIDRVSALPHALAVARQQQARFDAHQRAAFAATFHTVPGQSASRRAAEEIVYYLLQDKREAA
>NC_016027.1|WP_014104749.1|876175_877276_-|glycosyltransferase-family-4-protein
MRIAYVINSFEGGGAALPIPAIVGVCRSLGHSVRVVALERRNGRAMTALEHAGIGADVLAVDGAPAPRVLSRLDGWVRDVGPTHIWTSLTRATLLGQVVGMRHGIPVTSWQHNAFLKPGNLALLRLMRGRSRLWVGDSAYVTELTHTRLGIAPARLMCWPIFRTRPDLAPAPGWQPGEVMRIGTLGRLNPGKGYDMLCRALVAMRNVGGLPPFQVMIGGEGAEHGRLRAFCQQHGLDNVVFAGYVHDTAAFLRRCHLYVQPSRREGFCIAAHEAMDRALPVIGSTVGEMNRSIIHGVTGWKVAPCQPQALADVLETALRRPGRLAAMGQAAQALVNQRYSPAAFARAGDAVLRHMAGMTMHGASTP
>NC_016027.1|WP_014104748.1|874874_875723_+|3-deoxy-8-phosphooctulonate-synthase
MTKHHALSIGSLTVGNEAPFTLIAGPCQIESASHAMEVAEALHGIATKLGIGLIFKSSFDKANRTSINGARGVGMAQGLDILGQVRARFGLPVLTDVHLPEQCAPVAETVDVLQIPAFLCRQTDLLLAAGQTGAAINIKKGQFLAPWDMANVAAKVASTGNTRIMLCERGTSFGYNTLVNDMRGLPIMAGTGYPVIYDATHSVQQPGGLGTASGGQRVFAPILARAALAIGVAGVFIETHPDPDAAPSDGATMLSLACMEDVLTTLLRYDRLTKGHPPAEIV
>NC_016027.1|WP_014104747.1|873228_874878_+|CTP-synthase
MTRFVFITGGVVSSLGKGIASAALAALLQARGYRVRLRKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVHATRADNATTGQIYSGVIARERRGDYLGATVQVIPHITDSIKETIVADTEDLDFVLVEIGGTVGDIESLPFLESIRQLRNDLAPDQTMFIHLTLLPWIAAAGELKTKPTQHSVKELQNVGIQPQMLVCRSDREIPENERRKIASFCNVRPQAVIAARDVDTIYACPISYHAEGMDTEVLRHFGLPTTPDPDLSRWEKIVDAVRHPDREVVVTVVGKYTALLDSYKSLIEALQHGGIANRARVRLNWVEAEDFEKSDDAVNSLARSDAILVPGGFGERGSEGKIRAVKYARENNIPFMGICFGMQMAVIECARNLAGIEKASSTEFGPTDQPLVGLMTEWARGNELLRRREGGEMGGTMRLGAYPAKLAPGSRAAETYGRTDIRERHRHRYEVNNHYREQLEKTGLRFSGMSPDGILPEVVEYPDHPWFIAVQYHPELLSKPFDPHPLFSGFIKAAVAKAAERAAGNRR
>NC_016027.1|WP_014104746.1|872785_873100_+|preprotein-translocase-subunit-SecG
MITVLLLLHLFVTIALIGTILIQRSEGGGLGIGGSQGMGSFMSGRGTATLLTRSTAVLGTTFMVLSLTLAVMNRGASSGVGHDILAAPPAAPATPATTAPATTP
>NC_016027.1|WP_014104745.1|872004_872748_+|triose-phosphate-isomerase
MKQIIVGNWKMNGLSADADALVTGLAAGLAALPTRADVVVCPPFTQLARLAPKLKAAGIALGAQDCHKDKSGAHTGDISAPMLADLGVQYVILGHSERRAEHGELDETVREKTVAAMAAGLTPIVCVGENADQRDSGDSRDAVGWQIQGSLPQGFTGIVAYEPIWAIGSGTAASQQDIADMSAFIRAELVRQFGEAGKTIRILYGGSVNERNVTDILPVENVDGALVGNASLKADAFVPLVRAARAS
>NC_016027.1|WP_081477923.1|869812_871801_-|peptidylprolyl-isomerase
MVRGPCSFRLCLGAGAGYFMLSFLYRVFVDSWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGDRPILVQSYQNALQSEMPQVAQSMHLSDPSQIPPATREQVARQVLQRLVLQAEIAEAADRHFLIVPDSVVRDEIFSIPAFKGGNGQFDRALFNDRLRRTGMTEGRLIELVRQEQASRMLLEPIRNGVGVSEVMVRHLFDFEAQTRTIDLVRIPFESQQVTATPTQAQLARYHANHPWEFTAPEYRHARVVVLTTDTIGRMLDITDDEMQQAYKAQAQTFSSPERRNVQIVTVPTEVRATALRAQWVDGNAWAQVQKDAGRDAAAVELPGMKLSDIPSPDLAKLVFAAPVDATQGPVRSEGGWVVFRVTAITPAHTTPMAEVKQALHDQIAHTRAQALLADRVQKLQDAIAGGGLDSVPADLGAAAVSGDLDASGNTHEGTPAPIPGTDALRQAVIARVFSQPKGASPTLVQGPDGGWYAVSVDGITPGHPLSLAEAGGRVNAAWLADARRHMADQQAAAFYNQAQGQGGLAHVTPAVPGLEHSQPISPMQPAPEIPREVAALIFRLDKVGQNIMTEAGDGYVVATLTAINHPDPAAQKALYDRVRAGLTQSMGEDIEMGYGGALEAIVKPKPNESALRAVMAEVTGQNTGTTQ
>NC_016027.1|WP_014104755.1|885039_887439_-|recombinase
MDGGFSLAGTARAHVRNPLEGAFGTPSLPSRALDRGMGEAVGRRTVFRPADHEDFGRVADRVARGNTELLPTVTPAERAQLRNAIATGALLTSGRHLQHGDAAQPGRNMEMFTNCATAICSFAKFYLLLNGSGVGRAYDDELCVVDWGQAPDLQFVLSPSHPDYPHDRAGLLRLGLEMQILPWGTGLDAFDAAMEGKVRAFLSRNVMTQVPEGAEQAHVIADSREGWGKAVEMIEAMAFAGARTRTLVFDFSAIRCAGSPIAGMQGRPASGPVSLLRGLLNVRDHVIRPARAGSMALWEQALRVDHYLSVEVQVGGARRAARMATKSWRDADVLRFIRAKEEGGLWTANHSVMVDAEFWACVNDPARVAPLADHARAVFAEATRCAWINGEPGFINGDRLEDSRTGSARRKPVYTDGRDFRSHRYQATEGAGLLADLARRAAGAHFPVTTNPCGEITLHVTGGYCVIGDFAPLLACPVALDGVTPGHVAAETAAIWDARVRDAVRLGVRFLLRANRMDALYGEEVRRTNRIGIGPTGLHEWAWLRFGLDFHDLLDETRAAPFWDAVRELSTIAKTEANAYAHETGTARPVTVTTVKPAGTTSKLFGLTEGAHLPARRQYLRWVQFKGVQCADGTWETGSDPLLADYASRGYPVRSLRSFPGMSIVGFPTVPLIQRLGMGGRVVTAPEATPAEQYRWLELLEKYWIGAAQGNQVSYTLKVYTDRHDLAGFRAMVAANQPHVRCCAVLPSRPDSDLGYEYLPEEEVPAGRFAAITAAIHGEDAREVVDWAHLQCASGACPI
>NC_016027.1|WP_014104756.1|887722_888898_+|low-temperature-requirement-protein-A
MATPAPTLHPLMRQSGPDGARVTNEELFFDLAYVFLVTQISHGLLHHLNWMGGVQTLILWFAAWLGWQYTGWVTNWFDPRVPALRGVMFVTMALAVLCGAAAPEAFGPRGLAFALCYAAMQVGRSAFIVCSLPASHPLAPNYRRILGWGVIAGVFWIAGGVGTPAWRVPLWAVGVACEYVSPMFGFWLPGLGRSRTADWTIAGGHLVERCQLFVIVALGETIMASGLSLAKNTEWSVWELGGFGTSFLCTIAMWWLYFGTSSEEAEHSITTSPDPGRMGAYFHYLHVVLVAGIIVTAVGMDILLEEPVEAATGAPAVVMTLGPVLYLMASTLYRWVATRRLVRAQVAGAVVLVVAGIAGHGLPMWQLALVETLVLLATSFVSVGRPQVERR
>NC_016027.1|WP_041247165.1|889598_889808_+|hypothetical-protein
MNIRHLPGGFHHSFIYISVDGSTDPIASALGRIAAIGTNPTPVLAALGSLMMTNTRQRMREGIDPNGVR
>NC_016027.1|WP_014104758.1|890955_891297_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEVRAGVYVGSYGQRVREMIWGQVCAYIGEGNAVMAWAAPTDAGFAFDTCGSNRRVPVDFDGLRLVAFGPEAALPTQPGPMATPLSRRRKRE
>NC_016027.1|WP_014104759.1|891277_892237_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRPMPGLPPPRPIALKERASIIFVAMGQLDVLDGAFVVVDQRGVRTHIPIGGVACLMLEPGTRVSHAAAALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLFQARLALDDTARLAVVRRMYARRFGEEAPARRSVEQLRGIEGARVRETYRLLAQTHNVTWDGRRYDPHAWDTANVINRCLSAATAALYGITEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFEGVVPEAFRVAAAVQHDRPLEGQRIGDPVVAVRHRCRDQFRRTNILTRLIPLIEDVLAAGGLEPPPAQAEAMPVAFVEPKGPGDAGHRG
>NC_016027.1|WP_014104760.1|892246_892954_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTEGFLSRVALRHEASVQAIIRLLVPGSAGQQHGAAHHLLWALFGDTPERRRDFLWRQTAPGQFMVLSARAPVDRHAIFDIESRPFAPVLKAGDRLRFMLCANATVDRKPPEKDRKAPGRTRSQRHDVVMDALHALPSAERATARARVVPEVMAAWLARQGARTGFVPLDAPEIERCDVLSIPRAQGRARARFGVVDMTGVLAVEDPALFVPALLHGFGRARAFGCGLMLVRRAG
>NC_016027.1|WP_014104761.1|892950_893736_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGRFLTFAMVAPMASFGMLAVGERRDGADRPARSAVLGLVGACLGLTRADGAAQAALAQGYGLALLCHAPGELLTDYHTTQSAPTRRNWQPATRARELAEAGDDLATILSRRDYRTGSWHLGAVWVRDAAPRWSLEEICAAMREPVFTPSLGRRSCPPGLPLAPQVVEGETATAVLLERQHNGPESQMHARYGLFRDQLAGHSRADEGALVVMDMADVAAHAGDHPVIRREMRRDEPLSRTRWQFGLREEAVLHCNAKVGI
>NC_016027.1|WP_041247166.1|893739_894798_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFIQLHLLTFYPPSNVNRDDMGKPKTATVGGVTRLRISSQALKRAWRTSEIFDHALAGHMGQRTQRLGEEVLAHLHAKGTKEKDAIKIAREIAGVYGKVKPEKDGNPTRTEQLVFISPTEREMALAMADRMAAGEKVDPKKEQDTLLHRADTAADIALFGRMLASAPAFNREAAVQVAHALTTHRVTVEDDYYTAIDDLNKGEEDAGAGFLGEAGFGSGVFYLYLCINRDLLLSNLGGEGETGVAEAALGALVEAAMTVSPSGKQNSYAALARAGYVLAEKGNAQPRTLAGAFARPVGGEDLMASSITALKDFRAELARVYGPGVDETCEMALGDAKSATLADLVTFCRA
>NC_016027.1|WP_014104763.1|894918_895467_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MRRDDRATARQVATWWHELQPDPERKRPGDRATLARLRHCGSVTEALFEPETQMLAQRCAAQGENAIARMALVAGVVAHVRTDTPAMRLARQIGPVDMKDAATTLCKPIRFRRLLDARTYDECLRGFRRLVVLAGGAVNVTDLAHALLLWPREGTHDDVRAEWIRREWVYQYWNAGPMATDS
>NC_016027.1|WP_014104764.1|895466_897110_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTQPLNLISDPWLPVRHRSGARSLIRPAQIVAGLENDPIIDFDWPRADFRIASLEFLIGLLATACPPADHRAWGQRWCQPPTVAALDAAFAPLVPAFWLDGPGPRFMQDHEDLQSGSEPVERLLIDAPGESTIKRNADLFVHRAQVGRLGRGAAAMALFTLQSWAPSGGAGNMTGLRGGGPLTTLVLPEEGAGLWAVAWANVPCGSAADPAAMSRIFPWMAPTIASGNKGVVREGVNAHALQCWWGMPRRIRLDFAPAQGAPCDLTGRVDDVLVTSWRQRPYGPKYAGWIGQPYGGAVIHPLTPRYRQKATTEWLAVHPQPGGIGYRHWTGVVVSSTDTNRLPASCVADWRNARAVEIGLLDTARLLAAGFDMDNMKARGFVESEMPLPGTQGADMRDALDDLARDCVGAAVLVADILRGCVRDALAGKGTVSVDVTLLANVRERFWLDTETGFFNTLRSGSREGSDDMALKRAWLGMLGQAARRQFDATVKLEPDTDPARAQACAWARTRLFTAVAGTSKEGVGLLNMLALPVPVKTKTKTARKGA

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Crispr_ID: NC_016027_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016027_2

889939-890882

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CRT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	PILER-CR

15 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_016027_2

>merge|NC_016027|2|889939-890882|CRISPRCasFinder,CRT,PILER-CR
CGGTTCAGCCTCGCGTATGCGGGGAACACGCTAATGTTAGAATAAGGTTAGCTCCCTCGATCGGTTCATCCCCGCGTGTGCGGGGAACACGATCATGTCATGAACGAAGCGCTGTGCCGGTCCGGTTCATCCCCGCGTGTGCGGGGAACACAGACGTACGGAATGGGAATAAGTTTTTTGTTACGGTTCATCCCCGCGTGTGCGGGGAACACCCGACCGTAAAATCCAGACGGAAGGCCGCCGTCGGTTCATCCCCGCGTGTGCGGGGAACACTCCTGCGTGAAGGTGGTCAGCTTGCCTTCCAGCGGTTCATCCCCGCGTGTGCGGGGAACACCACAACGGCATGTCGGGCGTTGCCCCAGCCGTCGGTTCATCCCCGCGTGTGCGGGGAACACAGATGCCGACCGATCTGCGTCAGTGCACCCAGCGGTTCATCCCCGCGTGTGCGGGGAACACCACGATTGCACGGCGCTGGGCCGCAGATAGAACGGTTCATCCCCGCGTGTGCGGGGAACACTTCAAAACGAAGTTCGTAAAATAGCAGATTTCCGGTTCATCCCCGCGTGTGCGGGGAACACCTATCCAGCCAGGTGGTGAAATCGTTGAACGCCGGTTCATCCCCGCGTGTGCGGGGAACACTTAGTATGAGTGGGACAGTTGGGAAAACGACACGGTTCATCCCCGCGTGTGCGGGGAACACGCCAGACGGCGCACAGTATCATTGTTGGCGATCGGTTCATCCCCGCGTGTGCGGGGAACACATGTTTCGAGTCCGCGGGAATGGCTGCGTGAGCGGTTCATCCCCGCGTGTGCGGGGAACACCAGGGACCGGCGCTGTTCGTATGTCACAGCCTCGGTTCATCCCCGCGTGTGCGGGGAACACCCGCGCACGTCACCATGCAATGCAGCATCGCCCGGTTCATCCCCGCGTGTGCGGGGAACAC

>NC_016027|2|2|889939-890882|CRISPRCasFinder
CGGTTCAGCCTCGCGTATGCGGGGAACAC	GCTAATGTTAGAATAAGGTTAGCTCCCTCGAT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GATCATGTCATGAACGAAGCGCTGTGCCGGTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGACGTACGGAATGGGAATAAGTTTTTTGTTA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGACCGTAAAATCCAGACGGAAGGCCGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TCCTGCGTGAAGGTGGTCAGCTTGCCTTCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACAACGGCATGTCGGGCGTTGCCCCAGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGATGCCGACCGATCTGCGTCAGTGCACCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACGATTGCACGGCGCTGGGCCGCAGATAGAA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTCAAAACGAAGTTCGTAAAATAGCAGATTTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CTATCCAGCCAGGTGGTGAAATCGTTGAACGC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTAGTATGAGTGGGACAGTTGGGAAAACGACA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GCCAGACGGCGCACAGTATCATTGTTGGCGAT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	ATGTTTCGAGTCCGCGGGAATGGCTGCGTGAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CAGGGACCGGCGCTGTTCGTATGTCACAGCCT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGCGCACGTCACCATGCAATGCAGCATCGCC
CGGTTCATCCCCGCGTGTGCGGGGAACAC

>NC_016027|2|2|889939-890882|CRT
CGGTTCAGCCTCGCGTATGCGGGGAACAC	GCTAATGTTAGAATAAGGTTAGCTCCCTCGAT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GATCATGTCATGAACGAAGCGCTGTGCCGGTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGACGTACGGAATGGGAATAAGTTTTTTGTTA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGACCGTAAAATCCAGACGGAAGGCCGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TCCTGCGTGAAGGTGGTCAGCTTGCCTTCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACAACGGCATGTCGGGCGTTGCCCCAGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGATGCCGACCGATCTGCGTCAGTGCACCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACGATTGCACGGCGCTGGGCCGCAGATAGAA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTCAAAACGAAGTTCGTAAAATAGCAGATTTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CTATCCAGCCAGGTGGTGAAATCGTTGAACGC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTAGTATGAGTGGGACAGTTGGGAAAACGACA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GCCAGACGGCGCACAGTATCATTGTTGGCGAT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	ATGTTTCGAGTCCGCGGGAATGGCTGCGTGAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CAGGGACCGGCGCTGTTCGTATGTCACAGCCT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGCGCACGTCACCATGCAATGCAGCATCGCC
CGGTTCATCCCCGCGTGTGCGGGGAACAC

>NC_016027|2|2|890000-890882|PILER-CR
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GATCATGTCATGAACGAAGCGCTGTGCCGGTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGACGTACGGAATGGGAATAAGTTTTTTGTTA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGACCGTAAAATCCAGACGGAAGGCCGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TCCTGCGTGAAGGTGGTCAGCTTGCCTTCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACAACGGCATGTCGGGCGTTGCCCCAGCCGT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	AGATGCCGACCGATCTGCGTCAGTGCACCCAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CACGATTGCACGGCGCTGGGCCGCAGATAGAA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTCAAAACGAAGTTCGTAAAATAGCAGATTTC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CTATCCAGCCAGGTGGTGAAATCGTTGAACGC
CGGTTCATCCCCGCGTGTGCGGGGAACAC	TTAGTATGAGTGGGACAGTTGGGAAAACGACA
CGGTTCATCCCCGCGTGTGCGGGGAACAC	GCCAGACGGCGCACAGTATCATTGTTGGCGAT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	ATGTTTCGAGTCCGCGGGAATGGCTGCGTGAG
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CAGGGACCGGCGCTGTTCGTATGTCACAGCCT
CGGTTCATCCCCGCGTGTGCGGGGAACAC	CCGCGCACGTCACCATGCAATGCAGCATCGCC
CGGTTCATCCCCGCGTGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_016027.1\|WP_041247167.1\|897570_900282_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_016027.1\|WP_014104755.1\|885039_887439_-\|recombinase	unknown	unknown	gnl\|CDD\|274169
NC_016027.1\|WP_014104753.1\|883143_883761_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_016027.1\|WP_148268627.1\|878753_880844_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NC_016027.1\|WP_014104748.1\|874874_875723_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_016027.1\|WP_041247614.1\|881073_882753_-\|porin	unknown	unknown	gnl\|CDD\|369347
NC_016027.1\|WP_041247165.1\|889598_889808_+\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014104749.1\|876175_877276_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_016027.1\|WP_041247168.1\|902305_903676_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NC_016027.1\|WP_014104747.1\|873228_874878_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_016027.1\|WP_041247617.1\|901431_901935_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|376575
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_016027.1\|WP_014104750.1\|877331_878507_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	3.829e-30
NC_016027.1\|WP_041247167.1\|897570_900282_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.01684e-118
NC_016027.1\|WP_014104755.1\|885039_887439_-\|recombinase	gnl\|CDD\|274169	TIGR02505, RTPR, ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.04836e-47
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.76804e-106
NC_016027.1\|WP_148268627.1\|878753_880844_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	5.42362e-122
NC_016027.1\|WP_014104748.1\|874874_875723_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NC_016027.1\|WP_041247614.1\|881073_882753_-\|porin	gnl\|CDD\|369347	pfam07396, Porin_O_P, Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.	1.47806e-24
NC_016027.1\|WP_041247617.1\|901431_901935_-\|flavin-reductase-family-protein	gnl\|CDD\|376575	pfam01613, Flavin_Reduct, Flavin reductase like domain. This is a flavin reductase family consisting of enzymes known to be flavin reductases as well as various oxidoreductase and monooxygenase components. VlmR is a flavin reductase that functions in a two-component enzyme system to provide isobutylamine N-hydroxylase with reduced flavin and may be involved in the synthesis of valanimycin. SnaC is a flavin reductase that provides reduced flavin for the oxidation of pristinamycin IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. This flavin reductase region characterized by enzymes of the family is present in the C-terminus of potential FMN proteins from Synechocystis sp. suggesting it is a flavin reductase domain.	7.94503e-30
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.78855e-130
NC_016027.1\|WP_041247168.1\|902305_903676_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NC_016027.1\|WP_014104747.1\|873228_874878_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.02803e-114
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.03021e-12
NC_016027.1\|WP_014104749.1\|876175_877276_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.56363e-39
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.24955e-56
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	6.08637e-86
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.27296e-45

>NC_016027.1|WP_041247165.1|889598_889808_+|hypothetical-protein
MNIRHLPGGFHHSFIYISVDGSTDPIASALGRIAAIGTNPTPVLAALGSLMMTNTRQRMREGIDPNGVR
>NC_016027.1|WP_014104756.1|887722_888898_+|low-temperature-requirement-protein-A
MATPAPTLHPLMRQSGPDGARVTNEELFFDLAYVFLVTQISHGLLHHLNWMGGVQTLILWFAAWLGWQYTGWVTNWFDPRVPALRGVMFVTMALAVLCGAAAPEAFGPRGLAFALCYAAMQVGRSAFIVCSLPASHPLAPNYRRILGWGVIAGVFWIAGGVGTPAWRVPLWAVGVACEYVSPMFGFWLPGLGRSRTADWTIAGGHLVERCQLFVIVALGETIMASGLSLAKNTEWSVWELGGFGTSFLCTIAMWWLYFGTSSEEAEHSITTSPDPGRMGAYFHYLHVVLVAGIIVTAVGMDILLEEPVEAATGAPAVVMTLGPVLYLMASTLYRWVATRRLVRAQVAGAVVLVVAGIAGHGLPMWQLALVETLVLLATSFVSVGRPQVERR
>NC_016027.1|WP_014104755.1|885039_887439_-|recombinase
MDGGFSLAGTARAHVRNPLEGAFGTPSLPSRALDRGMGEAVGRRTVFRPADHEDFGRVADRVARGNTELLPTVTPAERAQLRNAIATGALLTSGRHLQHGDAAQPGRNMEMFTNCATAICSFAKFYLLLNGSGVGRAYDDELCVVDWGQAPDLQFVLSPSHPDYPHDRAGLLRLGLEMQILPWGTGLDAFDAAMEGKVRAFLSRNVMTQVPEGAEQAHVIADSREGWGKAVEMIEAMAFAGARTRTLVFDFSAIRCAGSPIAGMQGRPASGPVSLLRGLLNVRDHVIRPARAGSMALWEQALRVDHYLSVEVQVGGARRAARMATKSWRDADVLRFIRAKEEGGLWTANHSVMVDAEFWACVNDPARVAPLADHARAVFAEATRCAWINGEPGFINGDRLEDSRTGSARRKPVYTDGRDFRSHRYQATEGAGLLADLARRAAGAHFPVTTNPCGEITLHVTGGYCVIGDFAPLLACPVALDGVTPGHVAAETAAIWDARVRDAVRLGVRFLLRANRMDALYGEEVRRTNRIGIGPTGLHEWAWLRFGLDFHDLLDETRAAPFWDAVRELSTIAKTEANAYAHETGTARPVTVTTVKPAGTTSKLFGLTEGAHLPARRQYLRWVQFKGVQCADGTWETGSDPLLADYASRGYPVRSLRSFPGMSIVGFPTVPLIQRLGMGGRVVTAPEATPAEQYRWLELLEKYWIGAAQGNQVSYTLKVYTDRHDLAGFRAMVAANQPHVRCCAVLPSRPDSDLGYEYLPEEEVPAGRFAAITAAIHGEDAREVVDWAHLQCASGACPI
>NC_016027.1|WP_014104753.1|883143_883761_-|hypothetical-protein
MSQTWGDFQAVVQLSAGLNVAILSFVDISLPAIKERRRVFAKAQQELGMYRTAPSRLVSAQQLEHDCQVEEMNQKLYLLWQESTDYANEEDTLVHYTGVMGFFGAVLSLVLLWYSAEYYDTPIGGLGQAVIALSFCSLVVAFIINFMTASQSAVFTQKCNAIRQQARQNLTPQAGVPTKPATPVATPVATPVAAPVAAPAASTGA
>NC_016027.1|WP_041247614.1|881073_882753_-|porin
MIRRPVVSLLLGSSALLGLSSFHQAHADAASDAQIKALQVEMQAMRRDMSSQISVLRQRLVRAESVRGNSVAANAAQARRVAASHGQPLPDSYARDIHIGGDSGMGGSLSSAMQRADLGTPPSDRGVSSSWASFRAATEKEEALHMGGMVVGFPGGRPTISSEDGMYAMSIGLAFHEDIGGFMGMSPRRGETKGDYEGLTENARRLRIPISFRYKNWIANITPDFGSGSADGTSTSQLYEANLNYAGFNHTVITAGYFQPRVTEEDSESSNEFELMERPAITDIVRNIAAGDARMSLGALHYAKRWWIAGYVTGQTYGKRATYDSQSGATFRVAGRPYMSKDIDVHIGLSAITAFKVAQAKASDDRSYNFSEAPEVNLTTTKLLSATVGNVGSIWSAGPELGFRWKRLTLKGEYYNIGVTRGDNGGNSAANNATVNFTGYYGAANYTIFGKGRSYNIKEGAFAAPGVEHAFDPSHGYWGALEMTARYSVADLNANLGNASTALRGGQQTVWSAGLNWYPNRHFRFMLDFNHFIVSRNSVAANILGREGNSVAGRIQAAF
>NC_016027.1|WP_148268627.1|878753_880844_-|EAL-domain-containing-protein
MGDIARPGPVIPPDALGERLFEFFHNDAELMLVAVVNDDNVPVGLVERQAFFLRVSGKFGHALFNRRPVALLMDDSPVVIDAAVSSSDFTALTLMSQPSDLLRGYIVTRDGRYLGTGSALDLINASHSHAVASAASLKEAAEELRRANRKISRDKLFIDTIVENIPSALIVRSLRHEHLVLVNRAAEAMTGCRRDLLVERNVDDVFTSDEIGHLLVSRFAGGGQGVIEKVLCDHTGARRAISTRQVTIADERGAPRWELCVADDVTEQRDAQHQVELLAHYDPLTGLANRALFSSRLEAACVPGGTATLLCIDLDYFKTVNDVYGHAAGDSLLQLVSERLRACSRPEDLVARLGGDEFAIIWPTVPAPVELTARAREIVETVSRPYVIDGHHIVIGASVGSALYPRDADASENLLQYADIALYRAKSLGRNGFQFFDEELRDEIQTRARLGSELRGAIAGNGLTLHFQPLYSMPGNRLSACEALVRWHHPTQGMIPPDQFVGLAEENGLIHDLGEWVLRTACNEAADWPAQVKVAVNVSPIQLRNPRFIRIVEEALAQSGLPPERLEIEITENIFVQNSATNREILQKLGRIGCSIVLDDFGTGYSSLGYLRSFQFQKIKIDRSFVQELPERGAAGIIRAIISLAQSMDIPITAEGVETQDQWAHLNDLGCNQVQGFLLGRPQPADMIRQAILTHA
>NC_016027.1|WP_014104750.1|877331_878507_-|hypothetical-protein
MTTPHLQIGFLFNHDCTHQIAHTAPIICELVALGQDVTVVTSCDTQEQQVKKIIAGCAARVRFVHIDINRISRAINTVAGAVLPFRRIANLRDNLGLFAGFDALVVPETTSALLKSHFNLDVRLIYLPHGAGDRSIGFRDVTRFFDFVLLPGAKTRERMVRRKLVRPGHHAVIGYPKFDTIDMAARPRFFGNDRPTVLYNPHFDPILSSWWDMGMAVLEWFARQDEYNLIFAPHVMLFRRRLHTSVEHRRIRYRWSIPERLRNLSHILIDTGSTRSVDMSYVLAADIYLGDASSQVYEWICNPRPCIFLNSHNARWQDNPSYTHWNMGQVIDRVSALPHALAVARQQQARFDAHQRAAFAATFHTVPGQSASRRAAEEIVYYLLQDKREAA
>NC_016027.1|WP_014104749.1|876175_877276_-|glycosyltransferase-family-4-protein
MRIAYVINSFEGGGAALPIPAIVGVCRSLGHSVRVVALERRNGRAMTALEHAGIGADVLAVDGAPAPRVLSRLDGWVRDVGPTHIWTSLTRATLLGQVVGMRHGIPVTSWQHNAFLKPGNLALLRLMRGRSRLWVGDSAYVTELTHTRLGIAPARLMCWPIFRTRPDLAPAPGWQPGEVMRIGTLGRLNPGKGYDMLCRALVAMRNVGGLPPFQVMIGGEGAEHGRLRAFCQQHGLDNVVFAGYVHDTAAFLRRCHLYVQPSRREGFCIAAHEAMDRALPVIGSTVGEMNRSIIHGVTGWKVAPCQPQALADVLETALRRPGRLAAMGQAAQALVNQRYSPAAFARAGDAVLRHMAGMTMHGASTP
>NC_016027.1|WP_014104748.1|874874_875723_+|3-deoxy-8-phosphooctulonate-synthase
MTKHHALSIGSLTVGNEAPFTLIAGPCQIESASHAMEVAEALHGIATKLGIGLIFKSSFDKANRTSINGARGVGMAQGLDILGQVRARFGLPVLTDVHLPEQCAPVAETVDVLQIPAFLCRQTDLLLAAGQTGAAINIKKGQFLAPWDMANVAAKVASTGNTRIMLCERGTSFGYNTLVNDMRGLPIMAGTGYPVIYDATHSVQQPGGLGTASGGQRVFAPILARAALAIGVAGVFIETHPDPDAAPSDGATMLSLACMEDVLTTLLRYDRLTKGHPPAEIV
>NC_016027.1|WP_014104747.1|873228_874878_+|CTP-synthase
MTRFVFITGGVVSSLGKGIASAALAALLQARGYRVRLRKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVHATRADNATTGQIYSGVIARERRGDYLGATVQVIPHITDSIKETIVADTEDLDFVLVEIGGTVGDIESLPFLESIRQLRNDLAPDQTMFIHLTLLPWIAAAGELKTKPTQHSVKELQNVGIQPQMLVCRSDREIPENERRKIASFCNVRPQAVIAARDVDTIYACPISYHAEGMDTEVLRHFGLPTTPDPDLSRWEKIVDAVRHPDREVVVTVVGKYTALLDSYKSLIEALQHGGIANRARVRLNWVEAEDFEKSDDAVNSLARSDAILVPGGFGERGSEGKIRAVKYARENNIPFMGICFGMQMAVIECARNLAGIEKASSTEFGPTDQPLVGLMTEWARGNELLRRREGGEMGGTMRLGAYPAKLAPGSRAAETYGRTDIRERHRHRYEVNNHYREQLEKTGLRFSGMSPDGILPEVVEYPDHPWFIAVQYHPELLSKPFDPHPLFSGFIKAAVAKAAERAAGNRR
>NC_016027.1|WP_014104758.1|890955_891297_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEVRAGVYVGSYGQRVREMIWGQVCAYIGEGNAVMAWAAPTDAGFAFDTCGSNRRVPVDFDGLRLVAFGPEAALPTQPGPMATPLSRRRKRE
>NC_016027.1|WP_014104759.1|891277_892237_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRPMPGLPPPRPIALKERASIIFVAMGQLDVLDGAFVVVDQRGVRTHIPIGGVACLMLEPGTRVSHAAAALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLFQARLALDDTARLAVVRRMYARRFGEEAPARRSVEQLRGIEGARVRETYRLLAQTHNVTWDGRRYDPHAWDTANVINRCLSAATAALYGITEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFEGVVPEAFRVAAAVQHDRPLEGQRIGDPVVAVRHRCRDQFRRTNILTRLIPLIEDVLAAGGLEPPPAQAEAMPVAFVEPKGPGDAGHRG
>NC_016027.1|WP_014104760.1|892246_892954_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTEGFLSRVALRHEASVQAIIRLLVPGSAGQQHGAAHHLLWALFGDTPERRRDFLWRQTAPGQFMVLSARAPVDRHAIFDIESRPFAPVLKAGDRLRFMLCANATVDRKPPEKDRKAPGRTRSQRHDVVMDALHALPSAERATARARVVPEVMAAWLARQGARTGFVPLDAPEIERCDVLSIPRAQGRARARFGVVDMTGVLAVEDPALFVPALLHGFGRARAFGCGLMLVRRAG
>NC_016027.1|WP_014104761.1|892950_893736_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGRFLTFAMVAPMASFGMLAVGERRDGADRPARSAVLGLVGACLGLTRADGAAQAALAQGYGLALLCHAPGELLTDYHTTQSAPTRRNWQPATRARELAEAGDDLATILSRRDYRTGSWHLGAVWVRDAAPRWSLEEICAAMREPVFTPSLGRRSCPPGLPLAPQVVEGETATAVLLERQHNGPESQMHARYGLFRDQLAGHSRADEGALVVMDMADVAAHAGDHPVIRREMRRDEPLSRTRWQFGLREEAVLHCNAKVGI
>NC_016027.1|WP_041247166.1|893739_894798_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFIQLHLLTFYPPSNVNRDDMGKPKTATVGGVTRLRISSQALKRAWRTSEIFDHALAGHMGQRTQRLGEEVLAHLHAKGTKEKDAIKIAREIAGVYGKVKPEKDGNPTRTEQLVFISPTEREMALAMADRMAAGEKVDPKKEQDTLLHRADTAADIALFGRMLASAPAFNREAAVQVAHALTTHRVTVEDDYYTAIDDLNKGEEDAGAGFLGEAGFGSGVFYLYLCINRDLLLSNLGGEGETGVAEAALGALVEAAMTVSPSGKQNSYAALARAGYVLAEKGNAQPRTLAGAFARPVGGEDLMASSITALKDFRAELARVYGPGVDETCEMALGDAKSATLADLVTFCRA
>NC_016027.1|WP_014104763.1|894918_895467_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MRRDDRATARQVATWWHELQPDPERKRPGDRATLARLRHCGSVTEALFEPETQMLAQRCAAQGENAIARMALVAGVVAHVRTDTPAMRLARQIGPVDMKDAATTLCKPIRFRRLLDARTYDECLRGFRRLVVLAGGAVNVTDLAHALLLWPREGTHDDVRAEWIRREWVYQYWNAGPMATDS
>NC_016027.1|WP_014104764.1|895466_897110_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTQPLNLISDPWLPVRHRSGARSLIRPAQIVAGLENDPIIDFDWPRADFRIASLEFLIGLLATACPPADHRAWGQRWCQPPTVAALDAAFAPLVPAFWLDGPGPRFMQDHEDLQSGSEPVERLLIDAPGESTIKRNADLFVHRAQVGRLGRGAAAMALFTLQSWAPSGGAGNMTGLRGGGPLTTLVLPEEGAGLWAVAWANVPCGSAADPAAMSRIFPWMAPTIASGNKGVVREGVNAHALQCWWGMPRRIRLDFAPAQGAPCDLTGRVDDVLVTSWRQRPYGPKYAGWIGQPYGGAVIHPLTPRYRQKATTEWLAVHPQPGGIGYRHWTGVVVSSTDTNRLPASCVADWRNARAVEIGLLDTARLLAAGFDMDNMKARGFVESEMPLPGTQGADMRDALDDLARDCVGAAVLVADILRGCVRDALAGKGTVSVDVTLLANVRERFWLDTETGFFNTLRSGSREGSDDMALKRAWLGMLGQAARRQFDATVKLEPDTDPARAQACAWARTRLFTAVAGTSKEGVGLLNMLALPVPVKTKTKTARKGA
>NC_016027.1|WP_041247167.1|897570_900282_-|CRISPR-associated-helicase/endonuclease-Cas3
MPDQDEQGLAFFWGKARPDGAEGQGAAAMHPLPAHMLDVAAVAALLPGSGQMGLDRQQIALLVALHDIGKLAPAFQAREPACWPTQVLGACPDSVVQTRHDADGLLLLAHVCADELAPLFGTDEDGNDWSPGDRLRLWRAIAAHHGQPLGVEMRRARHIRNTPLAAHARALIGLLLDVFRPPPIPPCATLGDLLQLEWRLAGLTNKADWIGSNQKWFPYVTPHEVRDMAGYWWNHAVPRAQAAIARAGLAPVAIAPFQGIGHLFAHVVTPSPVQALMETLHLPAGPALVVIEDMTGSGKTEAALVAAHRLMAAGRATGLFVALPTMATANAMFDRMAVAYRGLFQPSAHPSLALAHGRAALDPRFAAILAPDDALDRAAITPERADAAEIGCAAWLGSEARRALLAQVGVGTIDQALMAVLPVRYATIRQAGLAGKVLLVDECHAYDPYMQAEMTALLRFHAAMGGSAILLSATLTHEVRHKLVAAFRAGLGQGETAPLSATSYPLVTLAGREGVRELPCAPRPGLARRIAVRRLDGVASVMRVVADAAGQGAAVAWVRNTVDDVIAAAKALHEQGIKATVFHARFAMVDRLAIERTVLARFGRDGTPAGRAGVVVASPVIEQSLDVDFDVLCTDLAPMDLIIQRAGRLRRHARRERPVDREELCLFAPEPVAAPDRNWLRRVLPGTAAVYRDPAILWRTARALEKHGAISSPEHIRDLIEEAGNAADTPAGLEQDSSVAQGHGLAASGLARSHVLNYEMGYVPESGGWDRETRISTRLQERRYVTVRLAVMQGADVCPWAAIQDESLAPLSERRRAWALSEVSVAQHALAACPVAAGLAHAVAAARAGWPRWEREADGQFLLLVLRQGKAGMEGDACNEKGEAVVVHYDPHYGLRVVPAPAG
>NC_016027.1|WP_041247617.1|901431_901935_-|flavin-reductase-family-protein
MDEQARKTALRMIPYGLYVLSAGTEQGGLAAATINWVTQTSFAPPLLALGIKTDSALYDVARRSGDLVLNILGQGQGGLAFTFFKHAEYADGKLAGQDIGWAANGAPILSAAPAAVELKVRHVVELGDHHTFIAEVIDVHLTRSITGRPDESVLQMKDLGEKVFYGG
>NC_016027.1|WP_041247168.1|902305_903676_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSPYRTINPATGKTEKVFDLHDDKTMLAKLSTAHQLWESDWRHRPIAQRKAIMLKAAGNLRRDREKHARLISIEMGKVLPEALAEIDLSADILTYYAQKAETFLAPRELSVSNGHATVTSESLGVIYCVEPWNFPYYQLARVAAPNLMAGNVVMVKHAPGVPQCAVAFEELFHEAGAPTGTYTNLFITNDQSEKLIERPEVRGVALTGSERAGSAVAAQAGRALKKSTMELGGSDAFIVLDDADLNKVIPLAVQGRMANNGQVCTAAKRMIVHTSLVEEFTTKLKAALNEFQYGDPLEQGVTHGPMSSEVAMKHAMAQVEKAVANGAKLVTGGKQIEREGFFMKAAILTHVAKDNPIFYEEIFGPVAIIYPAASEDEAVALANDSPYGLGGSIHTTDVERGRKVAARIDTGMVFINSTTGTAPDLPFGGIKNSGYGRELSEFGIEEFLNRKLVHTP

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Crispr_ID: NC_016027_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016027_3

900439-901260

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CRT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	PILER-CR

13 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NC_016027_3

>merge|NC_016027|3|900439-901260|CRISPRCasFinder,CRT,PILER-CR
CCGTTTAGCCCTGCGGGTGCGGGGAACACCACCGCCCAGTTGCTTGTCCGTGATACCCAGACGGTTCATCCCCGCGCGTGCGGGGAACACCACGACCACGTCGGGCAGCAGTTCCGGCACGACGGTTCATCCCCGCGCGTGCGGGGAACACGAGCCACACAACAATTACAACCGGCACTACTACGGTTCATCCCCGCGCGTGCGGGGAACACGTTCTGCGGCCAGTTTGCGGGATGATCGGGGTCGGTTCATCCCCGCGCGTGCGGGGAACACCTCCAAATGGAGCCGACAAACCGCAATATTGCCGGTTCATCCCCGCGCGTGCGGGGAACACAAATCATCGGAAATTTTTTCCTGTCCGGTCTGCGGTTCATCCCCGCGCGTGCGGGGAACACAGGGTATGTGGCGAATGACGGGAACGGTGCACCGGTTCATCCCCGCGCGTGCGGGGAACACTCTGATATAGACGCGAGGACATTCCCCAGCGTCGGTTCATCCCCGCGCGTGCGGGGAACACTCTGCCGCCACCTGTGTGGACACCCACGGGCGCGGTTCATCCCCGCGCGTGCGGGGAACACGCCATATGAGCGGGTTGGACAAAGATACGCCGCGGTTCATCCCCGCGCGTGCGGGGAACACGCATTGCCACGCATGGAAATGCCCGAATTGATCGGTTCATCCCCGCGCGTGCGGGGAACACTTCTTTGGCCCGATACCAGGTGAGCGTTCCGTCGGTTCATCCCCGCGCGTGCGGGGAACACGAGGCACCTGTAGGTGCTGGCAAGTCGGTAATCGGTTCATCCCCGCGCGTGCGGGGAACAC

>NC_016027|3|3|900439-901260|CRISPRCasFinder
CCGTTTAGCCCTGCGGGTGCGGGGAACAC	CACCGCCCAGTTGCTTGTCCGTGATACCCAGA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CACGACCACGTCGGGCAGCAGTTCCGGCACGA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGCCACACAACAATTACAACCGGCACTACTA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GTTCTGCGGCCAGTTTGCGGGATGATCGGGGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CTCCAAATGGAGCCGACAAACCGCAATATTGC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AAATCATCGGAAATTTTTTCCTGTCCGGTCTG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AGGGTATGTGGCGAATGACGGGAACGGTGCAC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGATATAGACGCGAGGACATTCCCCAGCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGCCGCCACCTGTGTGGACACCCACGGGCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCCATATGAGCGGGTTGGACAAAGATACGCCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCATTGCCACGCATGGAAATGCCCGAATTGAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TTCTTTGGCCCGATACCAGGTGAGCGTTCCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGGCACCTGTAGGTGCTGGCAAGTCGGTAAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC

>NC_016027|3|3|900439-901260|CRT
CCGTTTAGCCCTGCGGGTGCGGGGAACAC	CACCGCCCAGTTGCTTGTCCGTGATACCCAGA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CACGACCACGTCGGGCAGCAGTTCCGGCACGA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGCCACACAACAATTACAACCGGCACTACTA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GTTCTGCGGCCAGTTTGCGGGATGATCGGGGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CTCCAAATGGAGCCGACAAACCGCAATATTGC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AAATCATCGGAAATTTTTTCCTGTCCGGTCTG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AGGGTATGTGGCGAATGACGGGAACGGTGCAC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGATATAGACGCGAGGACATTCCCCAGCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGCCGCCACCTGTGTGGACACCCACGGGCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCCATATGAGCGGGTTGGACAAAGATACGCCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCATTGCCACGCATGGAAATGCCCGAATTGAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TTCTTTGGCCCGATACCAGGTGAGCGTTCCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGGCACCTGTAGGTGCTGGCAAGTCGGTAAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC

>NC_016027|3|3|900500-901260|PILER-CR
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CACGACCACGTCGGGCAGCAGTTCCGGCACGA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGCCACACAACAATTACAACCGGCACTACTA
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GTTCTGCGGCCAGTTTGCGGGATGATCGGGGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	CTCCAAATGGAGCCGACAAACCGCAATATTGC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AAATCATCGGAAATTTTTTCCTGTCCGGTCTG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	AGGGTATGTGGCGAATGACGGGAACGGTGCAC
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGATATAGACGCGAGGACATTCCCCAGCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TCTGCCGCCACCTGTGTGGACACCCACGGGCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCCATATGAGCGGGTTGGACAAAGATACGCCG
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GCATTGCCACGCATGGAAATGCCCGAATTGAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	TTCTTTGGCCCGATACCAGGTGAGCGTTCCGT
CGGTTCATCCCCGCGCGTGCGGGGAACAC	GAGGCACCTGTAGGTGCTGGCAAGTCGGTAAT
CGGTTCATCCCCGCGCGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_016027.1\|WP_041247167.1\|897570_900282_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_016027.1\|WP_014104770.1\|910651_911194_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|224943
NC_016027.1\|WP_014104776.1\|915011_916460_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NC_016027.1\|WP_014104772.1\|911805_913407_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_016027.1\|WP_014104778.1\|917091_918048_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_016027.1\|WP_041247165.1\|889598_889808_+\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_041247169.1\|914047_914557_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240030
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NC_016027.1\|WP_041247168.1\|902305_903676_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NC_016027.1\|WP_014104773.1\|913573_913954_+\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_016027.1\|WP_041247617.1\|901431_901935_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|376575
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_016027.1\|WP_014104777.1\|916480_916951_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_016027.1\|WP_014104775.1\|914553_914904_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085

Protein	Function_ID	Function_description	E-value
NC_016027.1\|WP_014104761.1\|892950_893736_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	3.829e-30
NC_016027.1\|WP_041247167.1\|897570_900282_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.01684e-118
NC_016027.1\|WP_014104764.1\|895466_897110_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.76804e-106
NC_016027.1\|WP_014104770.1\|910651_911194_+\|superoxide-dismutase-family-protein	gnl\|CDD\|224943	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism].	2.33196e-40
NC_016027.1\|WP_014104776.1\|915011_916460_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	2.1911e-15
NC_016027.1\|WP_014104772.1\|911805_913407_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_016027.1\|WP_014104778.1\|917091_918048_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	6.31917e-153
NC_016027.1\|WP_041247617.1\|901431_901935_-\|flavin-reductase-family-protein	gnl\|CDD\|376575	pfam01613, Flavin_Reduct, Flavin reductase like domain. This is a flavin reductase family consisting of enzymes known to be flavin reductases as well as various oxidoreductase and monooxygenase components. VlmR is a flavin reductase that functions in a two-component enzyme system to provide isobutylamine N-hydroxylase with reduced flavin and may be involved in the synthesis of valanimycin. SnaC is a flavin reductase that provides reduced flavin for the oxidation of pristinamycin IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. This flavin reductase region characterized by enzymes of the family is present in the C-terminus of potential FMN proteins from Synechocystis sp. suggesting it is a flavin reductase domain.	7.94503e-30
NC_016027.1\|WP_041247169.1\|914047_914557_+\|NUDIX-hydrolase	gnl\|CDD\|240030	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.3637e-44
NC_016027.1\|WP_014104756.1\|887722_888898_+\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	6.08637e-86
NC_016027.1\|WP_041247168.1\|902305_903676_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NC_016027.1\|WP_014104763.1\|894918_895467_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.03021e-12
NC_016027.1\|WP_014104759.1\|891277_892237_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.78855e-130
NC_016027.1\|WP_014104777.1\|916480_916951_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	9.72483e-40
NC_016027.1\|WP_014104758.1\|890955_891297_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.24955e-56
NC_016027.1\|WP_041247166.1\|893739_894798_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.02803e-114
NC_016027.1\|WP_014104760.1\|892246_892954_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.27296e-45
NC_016027.1\|WP_014104775.1\|914553_914904_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	1.7306e-10

>NC_016027.1|WP_041247167.1|897570_900282_-|CRISPR-associated-helicase/endonuclease-Cas3
MPDQDEQGLAFFWGKARPDGAEGQGAAAMHPLPAHMLDVAAVAALLPGSGQMGLDRQQIALLVALHDIGKLAPAFQAREPACWPTQVLGACPDSVVQTRHDADGLLLLAHVCADELAPLFGTDEDGNDWSPGDRLRLWRAIAAHHGQPLGVEMRRARHIRNTPLAAHARALIGLLLDVFRPPPIPPCATLGDLLQLEWRLAGLTNKADWIGSNQKWFPYVTPHEVRDMAGYWWNHAVPRAQAAIARAGLAPVAIAPFQGIGHLFAHVVTPSPVQALMETLHLPAGPALVVIEDMTGSGKTEAALVAAHRLMAAGRATGLFVALPTMATANAMFDRMAVAYRGLFQPSAHPSLALAHGRAALDPRFAAILAPDDALDRAAITPERADAAEIGCAAWLGSEARRALLAQVGVGTIDQALMAVLPVRYATIRQAGLAGKVLLVDECHAYDPYMQAEMTALLRFHAAMGGSAILLSATLTHEVRHKLVAAFRAGLGQGETAPLSATSYPLVTLAGREGVRELPCAPRPGLARRIAVRRLDGVASVMRVVADAAGQGAAVAWVRNTVDDVIAAAKALHEQGIKATVFHARFAMVDRLAIERTVLARFGRDGTPAGRAGVVVASPVIEQSLDVDFDVLCTDLAPMDLIIQRAGRLRRHARRERPVDREELCLFAPEPVAAPDRNWLRRVLPGTAAVYRDPAILWRTARALEKHGAISSPEHIRDLIEEAGNAADTPAGLEQDSSVAQGHGLAASGLARSHVLNYEMGYVPESGGWDRETRISTRLQERRYVTVRLAVMQGADVCPWAAIQDESLAPLSERRRAWALSEVSVAQHALAACPVAAGLAHAVAAARAGWPRWEREADGQFLLLVLRQGKAGMEGDACNEKGEAVVVHYDPHYGLRVVPAPAG
>NC_016027.1|WP_014104764.1|895466_897110_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTQPLNLISDPWLPVRHRSGARSLIRPAQIVAGLENDPIIDFDWPRADFRIASLEFLIGLLATACPPADHRAWGQRWCQPPTVAALDAAFAPLVPAFWLDGPGPRFMQDHEDLQSGSEPVERLLIDAPGESTIKRNADLFVHRAQVGRLGRGAAAMALFTLQSWAPSGGAGNMTGLRGGGPLTTLVLPEEGAGLWAVAWANVPCGSAADPAAMSRIFPWMAPTIASGNKGVVREGVNAHALQCWWGMPRRIRLDFAPAQGAPCDLTGRVDDVLVTSWRQRPYGPKYAGWIGQPYGGAVIHPLTPRYRQKATTEWLAVHPQPGGIGYRHWTGVVVSSTDTNRLPASCVADWRNARAVEIGLLDTARLLAAGFDMDNMKARGFVESEMPLPGTQGADMRDALDDLARDCVGAAVLVADILRGCVRDALAGKGTVSVDVTLLANVRERFWLDTETGFFNTLRSGSREGSDDMALKRAWLGMLGQAARRQFDATVKLEPDTDPARAQACAWARTRLFTAVAGTSKEGVGLLNMLALPVPVKTKTKTARKGA
>NC_016027.1|WP_014104763.1|894918_895467_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MRRDDRATARQVATWWHELQPDPERKRPGDRATLARLRHCGSVTEALFEPETQMLAQRCAAQGENAIARMALVAGVVAHVRTDTPAMRLARQIGPVDMKDAATTLCKPIRFRRLLDARTYDECLRGFRRLVVLAGGAVNVTDLAHALLLWPREGTHDDVRAEWIRREWVYQYWNAGPMATDS
>NC_016027.1|WP_041247166.1|893739_894798_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFIQLHLLTFYPPSNVNRDDMGKPKTATVGGVTRLRISSQALKRAWRTSEIFDHALAGHMGQRTQRLGEEVLAHLHAKGTKEKDAIKIAREIAGVYGKVKPEKDGNPTRTEQLVFISPTEREMALAMADRMAAGEKVDPKKEQDTLLHRADTAADIALFGRMLASAPAFNREAAVQVAHALTTHRVTVEDDYYTAIDDLNKGEEDAGAGFLGEAGFGSGVFYLYLCINRDLLLSNLGGEGETGVAEAALGALVEAAMTVSPSGKQNSYAALARAGYVLAEKGNAQPRTLAGAFARPVGGEDLMASSITALKDFRAELARVYGPGVDETCEMALGDAKSATLADLVTFCRA
>NC_016027.1|WP_014104761.1|892950_893736_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGRFLTFAMVAPMASFGMLAVGERRDGADRPARSAVLGLVGACLGLTRADGAAQAALAQGYGLALLCHAPGELLTDYHTTQSAPTRRNWQPATRARELAEAGDDLATILSRRDYRTGSWHLGAVWVRDAAPRWSLEEICAAMREPVFTPSLGRRSCPPGLPLAPQVVEGETATAVLLERQHNGPESQMHARYGLFRDQLAGHSRADEGALVVMDMADVAAHAGDHPVIRREMRRDEPLSRTRWQFGLREEAVLHCNAKVGI
>NC_016027.1|WP_014104760.1|892246_892954_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTEGFLSRVALRHEASVQAIIRLLVPGSAGQQHGAAHHLLWALFGDTPERRRDFLWRQTAPGQFMVLSARAPVDRHAIFDIESRPFAPVLKAGDRLRFMLCANATVDRKPPEKDRKAPGRTRSQRHDVVMDALHALPSAERATARARVVPEVMAAWLARQGARTGFVPLDAPEIERCDVLSIPRAQGRARARFGVVDMTGVLAVEDPALFVPALLHGFGRARAFGCGLMLVRRAG
>NC_016027.1|WP_014104759.1|891277_892237_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRPMPGLPPPRPIALKERASIIFVAMGQLDVLDGAFVVVDQRGVRTHIPIGGVACLMLEPGTRVSHAAAALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLFQARLALDDTARLAVVRRMYARRFGEEAPARRSVEQLRGIEGARVRETYRLLAQTHNVTWDGRRYDPHAWDTANVINRCLSAATAALYGITEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFEGVVPEAFRVAAAVQHDRPLEGQRIGDPVVAVRHRCRDQFRRTNILTRLIPLIEDVLAAGGLEPPPAQAEAMPVAFVEPKGPGDAGHRG
>NC_016027.1|WP_014104758.1|890955_891297_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEVRAGVYVGSYGQRVREMIWGQVCAYIGEGNAVMAWAAPTDAGFAFDTCGSNRRVPVDFDGLRLVAFGPEAALPTQPGPMATPLSRRRKRE
>NC_016027.1|WP_041247165.1|889598_889808_+|hypothetical-protein
MNIRHLPGGFHHSFIYISVDGSTDPIASALGRIAAIGTNPTPVLAALGSLMMTNTRQRMREGIDPNGVR
>NC_016027.1|WP_014104756.1|887722_888898_+|low-temperature-requirement-protein-A
MATPAPTLHPLMRQSGPDGARVTNEELFFDLAYVFLVTQISHGLLHHLNWMGGVQTLILWFAAWLGWQYTGWVTNWFDPRVPALRGVMFVTMALAVLCGAAAPEAFGPRGLAFALCYAAMQVGRSAFIVCSLPASHPLAPNYRRILGWGVIAGVFWIAGGVGTPAWRVPLWAVGVACEYVSPMFGFWLPGLGRSRTADWTIAGGHLVERCQLFVIVALGETIMASGLSLAKNTEWSVWELGGFGTSFLCTIAMWWLYFGTSSEEAEHSITTSPDPGRMGAYFHYLHVVLVAGIIVTAVGMDILLEEPVEAATGAPAVVMTLGPVLYLMASTLYRWVATRRLVRAQVAGAVVLVVAGIAGHGLPMWQLALVETLVLLATSFVSVGRPQVERR
>NC_016027.1|WP_041247617.1|901431_901935_-|flavin-reductase-family-protein
MDEQARKTALRMIPYGLYVLSAGTEQGGLAAATINWVTQTSFAPPLLALGIKTDSALYDVARRSGDLVLNILGQGQGGLAFTFFKHAEYADGKLAGQDIGWAANGAPILSAAPAAVELKVRHVVELGDHHTFIAEVIDVHLTRSITGRPDESVLQMKDLGEKVFYGG
>NC_016027.1|WP_041247168.1|902305_903676_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSPYRTINPATGKTEKVFDLHDDKTMLAKLSTAHQLWESDWRHRPIAQRKAIMLKAAGNLRRDREKHARLISIEMGKVLPEALAEIDLSADILTYYAQKAETFLAPRELSVSNGHATVTSESLGVIYCVEPWNFPYYQLARVAAPNLMAGNVVMVKHAPGVPQCAVAFEELFHEAGAPTGTYTNLFITNDQSEKLIERPEVRGVALTGSERAGSAVAAQAGRALKKSTMELGGSDAFIVLDDADLNKVIPLAVQGRMANNGQVCTAAKRMIVHTSLVEEFTTKLKAALNEFQYGDPLEQGVTHGPMSSEVAMKHAMAQVEKAVANGAKLVTGGKQIEREGFFMKAAILTHVAKDNPIFYEEIFGPVAIIYPAASEDEAVALANDSPYGLGGSIHTTDVERGRKVAARIDTGMVFINSTTGTAPDLPFGGIKNSGYGRELSEFGIEEFLNRKLVHTP
>NC_016027.1|WP_014104770.1|910651_911194_+|superoxide-dismutase-family-protein
MFPRIRQFALLACGVAAFGTSGLYARAHAADTAAGNLLGTDGAPHGNVQVTAAPHGVLLRITAQGLTPGWHGIHFHEKGSCEAPKFTSAGAHVHATTPVVHGLLNADANDAGDLPNLFVGRDGKATVEMYSTLMTLNGTDGHPAVLDADGTSLVIHAKPDDYHSQPIGGAGDRVACAVLR
>NC_016027.1|WP_014104772.1|911805_913407_-|glutamine-hydrolyzing-GMP-synthase
MMTETVNTAPPAALDEALHEDRILILDFGSQVTQLIARRVRESGVYCEIWPYSTSADKIRAFAPKGIILSGSPASVLDENAPTIPDVVFALNVPVLGICYGQQAMCRQLGGVVESSEHREFGRAHIDIIKDCALFRGTWARGGREQVWMSHGDRVTKLPPGFQAVAVSEGAPYAIIADEGRRLYGMQFHPEVVHTPHGAALLRNFTHDVAGCRGTWTMAGFRDMEIARIRQQVGKGRVICGLSGGVDSSVAAVLIHQAIGDQLTCIFVDPGILRAGEADEVIRTFRDRFNIHLIHRDASDLFLNALEGVSDPEIKRKTIGRLFIEVFEEEAAKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRELGREMDIPEVIVGRHPFPGPGLAIRIPGAITREKLDLLRRVDAIFLEEIRSAGLYDAIWQAFAVLLPVRTVGVMGDGRTYDYACALRAVTSTDGMTADIYPFDMSFLNRVAGRIVNEVRGVNRVTYDITSKPPGTIEWE
>NC_016027.1|WP_014104773.1|913573_913954_+|hypothetical-protein
MTARLFPLPAAFFCLACLALPPVARASSPLGLWTGQLVTDQGSCDETRDTSTFQIEKKRVTFTPADGSILLTGVPEADHAHYHAEALVRQPSGAPFPMVFEAHPEGKTIVGTYGTPRCRAHIVLKR
>NC_016027.1|WP_041247169.1|914047_914557_+|NUDIX-hydrolase
MSDNMTLAGAVLSIIVRDGRMLLVRRRNPPDQGLWGFPGGRIEHGESYLAAAARELREETGFETHAEGTLTAFDLIDRDAHGQIRFHYLIIAVKCHDNGWSAIRAGDDADDVDWFDMAQVHANPSAFSPGLPELGALALSSRGIAPWPVAQQTRLSETTAAQQPESILS
>NC_016027.1|WP_014104775.1|914553_914904_+|response-regulator
MTQISALIVEDEATIAELVATMLETQGIAATISPSVADAMHRIQTAAYTLALVDLTLPDGQPDAFIQAARARGSQVIAMSGDPDRLAHYAPLPLLEKPFRMKALLEQVRQAMPVPN
>NC_016027.1|WP_014104776.1|915011_916460_-|glycosyltransferase-family-39-protein
MWLYSLALLVCVRLVVAGLLPLSPDEAYYRIWALAPAAGYLDHPPMVAIWIRLGMLLAGDTPFGVRLVGVLAGCGLSFFIIRAVRDLVPDAPAGQGVRACLLLQATLALAIQSVVITPDMPVLFFVSMLVWCMGRIVAGAGAGWWVLAGLAGGLAFDSKYTAILPMAGIGVWLGLQGLWGRCAWLRAQMVGMVAAPGVTALAMAPVIWWNARHGWVSFARQGGRAADWHPARAFQYLTELAGGQLGLMTPGIAIFFVWAMVCLLRRARHAPGAALLVCMTGVPVCVFVQHALGDRVQANWPVIIYPLLAVGTAVLGWRWGRWAIGGGMLVGGAVYVQAVFAPLPLSAHADVALRQMAGWHALAERIGAVARPGDFIAACDYGTAAELATVMPGRVVLGMEPRWALFNLPHGAAGEGIMVCNPRREFERADLAVIQPLGVVMRGRRSRVAELEGLYRVQLRPDLPATRQQSIARLPVVPAHKS
>NC_016027.1|WP_014104777.1|916480_916951_-|Lrp/AsnC-family-transcriptional-regulator
MAEQMADLDAIDRRIVAELQLDGRMTNVELARRVGISAPPCLRRMRRLEEDHVIRGYHADTDGARLGWSITLFALIGLDSQKETVLSAFEAQVSAWPEVRECHMIRGEGDFLVRLVARDATHENLLTRQLTEAPHVVRVQTLQTIRTSLNRPGVPV
>NC_016027.1|WP_014104778.1|917091_918048_+|thioredoxin-disulfide-reductase
MPQTCSTDLLVIGAGPAGYTAAIYAARANLSPVLVAGLQPGGQLMITTDVENYPGFGKGIQGPDLMMQMAEQAGNVGTRLIDDIIVSCDFSRSDGAGRFYATGDSGTLYEARTVIIATGAQAKWLGVPGEKEFQGSGVSACATCDGFFYRGKRVAVIGGGNTAVEEALYLTHHASHVTLIHRRDSLRAEKILQDRLHANPKISVIWNSAVERITGNGTPPVVTGLELRDTKTGAIHDIAVDGVFVAIGHAPTTAIFRDIVEIDTDGYIMTTPGSTRTSVPGVFAAGDVQDKIFRQAVTAAGTGCMAALEAERFLAATV

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Crispr_ID: NC_016027_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016027_4

1851600-1851709

Orphan

Consensus_repeat	Method
CTGCCCGACATGCCCGACTGCCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016027_4

>merge|NC_016027|4|1851600-1851709|CRISPRCasFinder
CTGCCCGACATGCCCGACTGCCCGAATGTATGTCGGGCAGCTTTTTGGAAACCAGAATGGTGGAAAACTGCGGGGTATAGCGTGCCTGCCCGACATGCCCGACATGCCCG

>NC_016027|4|4|1851600-1851709|CRISPRCasFinder
CTGCCCGACATGCCCGACTGCCCGA	ATGTATGTCGGGCAGCTTTTTGGAAACCAGAATGGTGGAAAACTGCGGGGTATAGCGTGC
CTGCCCGACATGCCCGACATGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016027.1\|WP_041247296.1\|1842678_1843128_+\|DUF2501-domain-containing-protein	unknown	unknown	gnl\|CDD\|236951
NC_016027.1\|WP_014105602.1\|1854636_1854909_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014105603.1\|1854905_1855313_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014105601.1\|1854337_1854640_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235927
NC_016027.1\|WP_014105604.1\|1855513_1855720_-\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|200128
NC_016027.1\|WP_014105600.1\|1851736_1854334_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|336282
NC_016027.1\|WP_041247302.1\|1857346_1857580_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_041247300.1\|1855814_1856588_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014105591.1\|1839656_1840553_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NC_016027.1\|WP_014105596.1\|1845523_1848298_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_016027.1\|WP_041247301.1\|1857101_1857350_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014105599.1\|1850165_1850726_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_016027.1\|WP_014105597.1\|1848312_1848528_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|370944
NC_016027.1\|WP_014105590.1\|1838779_1839643_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_016027.1\|WP_148268567.1\|1848600_1849686_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_016027.1\|WP_041247297.1\|1844894_1845524_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|376869
NC_016027.1\|WP_148268569.1\|1856590_1856779_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_193360639.1\|1840524_1842294_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NC_016027.1\|WP_014105606.1\|1856775_1857105_-\|hypothetical-protein	unknown	unknown	unknown
NC_016027.1\|WP_014105594.1\|1843200_1844880_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173871

Protein	Function_ID	Function_description	E-value
NC_016027.1\|WP_041247296.1\|1842678_1843128_+\|DUF2501-domain-containing-protein	gnl\|CDD\|236951	PRK11667, PRK11667, hypothetical protein; Provisional.	4.06999e-08
NC_016027.1\|WP_014105601.1\|1854337_1854640_-\|hypothetical-protein	gnl\|CDD\|235927	PRK07078, PRK07078, hypothetical protein; Validated.	4.69193e-05
NC_016027.1\|WP_014105604.1\|1855513_1855720_-\|excisionase-family-DNA-binding-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.52107e-06
NC_016027.1\|WP_014105600.1\|1851736_1854334_-\|DUF927-domain-containing-protein	gnl\|CDD\|336282	pfam06048, DUF927, Domain of unknown function (DUF927). Family of bacterial proteins of unknown function. The C-terminal half of this family contains a P-loop motif. The N-terminal domain appears to have a unique fold, which contains three Helices and two strands. Structural analyses show that helicases containing this domain form a hexameric ring with a positively charged central pore threading a single DNA strand through suggestive of a replicative function for this helicase.	2.21264e-84
NC_016027.1\|WP_014105591.1\|1839656_1840553_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	2.94501e-113
NC_016027.1\|WP_014105596.1\|1845523_1848298_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_016027.1\|WP_014105599.1\|1850165_1850726_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.67703e-48
NC_016027.1\|WP_014105597.1\|1848312_1848528_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|370944	pfam10276, zf-CHCC, Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.	2.65052e-12
NC_016027.1\|WP_014105590.1\|1838779_1839643_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	9.56937e-53
NC_016027.1\|WP_148268567.1\|1848600_1849686_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.83155e-36
NC_016027.1\|WP_041247297.1\|1844894_1845524_-\|SCO-family-protein	gnl\|CDD\|376869	pfam02630, SCO1-SenC, SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.	1.25564e-37
NC_016027.1\|WP_193360639.1\|1840524_1842294_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NC_016027.1\|WP_014105594.1\|1843200_1844880_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173871	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold. Clavulanic acid (CA), a clinically important beta-lactamase inhibitor, is one of a family of clavams produced as secondary metabolites by fermentation of Streptomyces clavuligeru. The biosynthesis of CA proceeds via multiple steps from the precursors, glyceraldehyde-3-phosphate and arginine. CA possesses a characteristic (3R,5R) stereochemistry essential for reaction with penicillin-binding proteins and beta-lactamases. Two genes (oppA1 and oppA2) in the clavulanic acid gene cluster encode oligopeptide-binding proteins that are required for CA biosynthesis. OppA1/2 is involved in the binding and transport of peptides across the cell membrane of Streptomyces clavuligerus. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.76909e-152

>NC_016027.1|WP_014105599.1|1850165_1850726_-|recombinase-family-protein
MKIGYARTSTVDQDAGLEAQVRDLQAHGCEQVFSEQVSATQAARPELETAISHLREGDVLVVCKPDRLARSTVDLLGLIERVEARKAGLVILSMSGQVLDTTTPTGKLMLTMLGAVAEFERSLMLERQREGIAKAKADGKYKGRRPTAMEKASQVQALKSEGISPTEIARRLGISRMSVYRCLEAI
>NC_016027.1|WP_148268567.1|1848600_1849686_+|alpha/beta-fold-hydrolase
MMIRRIAVLSNIRLSRLLYPALFVMLTACTTQEAPPPAPPTRHPDLARLVPADQTVTIAGVGAVPLRIWPARSAERAVILALHGFNDSRDAWERPAPALNAAGMTIIAPDLPGFGQTVQRGGWVGTDALLRTASTLVITIGREHPGMPVYVVGESMGGALAIMLASQPDTPPVAGYILLAPAVWDLDTGTRTTTHLLAALAPRWRLSGRELPVHVTAADNMLALARLYYDPLTLRDTSTVALSGLTDLMHRAARADAHMAGRVLVIYGGHDQIIPAPAMARAWRRMPQATRHDYIPGGYHLLLRSHNAEQITADMTHWIINPDSFLPSGGDMAAAAWMADQKGRSAPPPIVPGWMDWITPQ
>NC_016027.1|WP_014105597.1|1848312_1848528_-|zinc-finger-domain-containing-protein
MQALSHDPVPHPRLGMIETIVVDSRTLSCDGGLGALGHPRVFLRIAHHQTFCPYCSRLFVLSPDAPADTGH
>NC_016027.1|WP_014105596.1|1845523_1848298_-|DNA-polymerase-I
MSSDKQVHLILVDGSGFIFRAFHALPSMTSPDGTPVNAVYGFSNMLSRLLREHAGTHLAVIFDAGRHTFRNDLYGEYKSHRPEPPEELRPQFSLVRDATAAFGVPALEEAGWEADDLIAAYARKVTNAGGQCTIYSSDKDLMQLIRPGVMMMDPIKNRPIGPKEVEAKFGVAPDRVAQVQALIGDPVDNVPGVPGIGPKTASALMAEYGSLDAILAGAESMKASKRRDNLLAHADMARLSLQLVTLREDAPCPEPLSDLACCDVDMERLGAWLSDMGFSSLLQRMGLKAKPRPRISAHVTPEGLSQPESELPPIPPEPYGGYETVTDPAVLREWVEQARTSGVCAVDTETDGLDPLTAPLIGISLAPHCGRACYIPLGHQVDLMDSPGTPQMPVKTALEILEPLFADPSVLKVFQNAKFDLLVLTQAGSVQPTPIDDTMLISYAQSAGKHGQGMDELSRLTLDHTPIPYDEVTGTGRNRVVFSRVDIARATPYAAEDADVTLRLWQMLKPRLRTNHALALYEEMERPLVPILADMERAGIAVDANDLRAMSTEFAQRMGVIEAEIHKLAGRDFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQGHDLPERILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGNVLVSADYSQIELRLLADVADIPALREAFELGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYMERVKAQARAKGYVTTPFGRRCWVPGIGDKSAMRRNYAERQAINAPLQGGAADIIKRAMVRIPTALADAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQVMESAATLSVPLVVETGTGTNWADAH
>NC_016027.1|WP_041247297.1|1844894_1845524_-|SCO-family-protein
MMRNERDRFFMLVGLAIVVVSSIFGYVGYRWSDSAPVPLTSYGNPVGGSFRLVNGADGSVLDTDFRGRWMLVYFGSTHCPDTVCGATVKAMAEGVEALGHDRARLAVPIFITLDPMRDTSDILRTYALRYGSHVTVMTASPKMIEAVAKEYHAPYVRHEGENGDYTMEPATQIVIMSPTGRYEGSLPATATAAEITARMTELMNARDGH
>NC_016027.1|WP_014105594.1|1843200_1844880_-|ABC-transporter-substrate-binding-protein
MKPAWRHAGRLALAGGLALLALPVWADTQASPHRGGTLRLTAASSAGTLDPQINYTSQYMQVESVVYDGLLTYPKLEGPAGAQVVPDLAQAQPERLDGGRTWVFTLREGIRFSNGAPVTVADVAASLRRIFMVGSPTAGSFYGDIIGADACLRTPAACTLRGGVETDEATRRITIRLNAPDSEFPYKLAFGHAVILPANTPTHDLGNDIAPGTGPYQIVSSDPEQGMRLTRNPYFHEWSEAAQPDGYVDAIDYDFGLSEEDALTAVERGQYDWMAGLKPLDRLGEIGGQYTAQVHVYPLYGLLFLPMNVNIPPFNNIKARQAVNYALDRRAMTILYGGSGIAAPLCRMVPPGLLPGDGACAWTRGADPDHPAPAWTHPDLTRARQLVHESGTEGQDVTLIVEATAMDTSMGTYLRDMLQAIGYHARLHPLSPAMQLSYSQNTANHVQISLIGWYADYASPSNFLDTVFGCENFHPGSDSSINFSGLCDPVVQALVARIRQAPDTQAAQALWQQVDDRITRLAPAAPMISISYVDLVSPRLGHYFSTSLYHMAFSRVWVR
>NC_016027.1|WP_041247296.1|1842678_1843128_+|DUF2501-domain-containing-protein
MVSFSRVLSASAFATVLATAPLAAHAAEVSPPTGAGVANQVEQIAPGSLSADTVFSAVESAKPADLGGIMNYCIQSNYLTASEAWPVLAAFNKKTNDVPSNQKGNMSYADGSTGLLKVGGKEPISLENASTDIRKQACAKVEARAKSLL
>NC_016027.1|WP_193360639.1|1840524_1842294_-|ABC-transporter-ATP-binding-protein/permease
MQHLRLLLKDVWYLTRPYFVSEDRKWAWGLLAAVLALTFSMVGLDLLQSFSRNVYYTALQQRDATTFLRGLFWYVHNDEGFVLGFFVITIPAIMCSIYATYLQQMLGLRWRRWLTVRMTRQWMENQTFFRIAITTSGIETGTDNPDQRIQEDLNSFVTDTLTQFINLVTNVVTLFSYIGLLWALSGPLEVLGISIPGYFFWAALIYSVGATWVTHLAGRKLAGLQFFQQRAEADFRYSLVHVRNNAEGIALYRGEGEEQAGLDRSFSVVYHNFLSIMRRTKWLGLLTTGLEVVSGNFALLIGSIRYFAGKMSFGTLMQLVMAFSRVQGALSWLSTSYASLTTWHAEVARLATFQRVMDRARAMRDEVKVLPAPAGADMVAAGLDVFRPDGTPLLHGVNLTLPHGQMTVVTGPSGTGKSTLFRVLAGIWPFATGSITQPDAAMMFIPQRPYVPTGTLHRAVAYPEGVESCPTAQVAQVLRQVGLEGLVPRMENEEPWGQILSPGELQRLAFARILLARPDWVFLDESTSNLDAASEAALYALLRQVCPGMTVVSITHRQSVVDMHANRIDLTPFAVKGGTDVSAGASPQA
>NC_016027.1|WP_014105591.1|1839656_1840553_+|zinc-ABC-transporter-substrate-binding-protein
MRRLSCLLGLYGFLSLTPAHADPAPHTVRAVASFTVLADVVAHVGGTHVTVTSLVPPDGDPHEFEPTPNDARVLRQANIVFMSGEGLESWFSRLAHAAGYHGTPVIVSNGISLYTPPGGRQAEADPHVWNNVANVIVWANNIRDALVAIDPADADSFRTSAAAYISQLEALDRDIRTRIDTIPANQRRVLTSHDAFGYFGRAYGVTFLAPQGLSTETEASAGDMASLIAQIRANHVTTYFMENATDPRMVRQVAHATGATPGGELYAEALSPPTGPVPDYITMMRHNTDLMLAAMRLH
>NC_016027.1|WP_014105590.1|1838779_1839643_+|metal-ABC-transporter-permease
MSSLVAALWGPFADFGFMRRALVACVTLGMGAGPVGVMLQLRRMSLIGDAMSHAILPGAAIGFLLAGGLSLTAMGLGGIGAGLGVALLAGLVSRRTHLAEDASFASFYLTSLALGVLIVSARGSNIDLLHVLFGTILAIDGPALYLMGGITTLSVALLAVIWRPLVMECVDPGFMRMSGGRGGLYHMVFLFLVVINLVAGFEALGTLMSVGMMMVPAATARLWTRRLLPMMALSAMVGVMAGLVGLLVSYHFQLAAGPTIILTCSVLYIFSLLASPTGIRAGAGLSL
>NC_016027.1|WP_014105600.1|1851736_1854334_-|DUF927-domain-containing-protein
MSENDMPVDYTDPAPDPHIPVPATSIDNFGNITNLTPDLESAFSPLAEAERQTIPGRTGEIWDPITPAPSEPEMPRGASAMWVYRDADGQPLCARFRKDDGAGGKVVLPLTYGRRLWTDGKGSRWDVTGWHWKQGAKPLPLYGLEQLAAFADVPVLLVEGEKTADAAAALFKDCVVMTSQGGSKAAANNDWSPLAGRDVIIWPDNDDAGQAWADDVIRYLREAGAGIVRKVDVPATLPLGWDLADDVPPDVLAEQENTSAAEWAVRLVEVAPMAAPNVQMPPGYFMNPAGLHFMPDSNGDIPAPPIWIAAPFDVVAETNDGTGFGWGLMIRWQDRDNRKHEWAIPKRMVHGDGKDISGELEDAGLNCSISATRYLRQFIASARTKARLRCVDRAGWHTAPDGHTFILPGGLPIGTGARSVVFQSSRATTGQEFAVAGTLAEWQHKVAACAVGNSRLALFLSAAFAGPLLDIVGEQSGGIHLVGKAQSGKSTAAYIAGSVWGRGDREGQIRAWRGTANGLEGVASETSDTVLILDEMGQADSREVGEITYMLANNSGKMRAGRTGNARARKTWRVLFLSTGEVTLAAKMGEAGKRIMAGQEVRLVNIPADAGAGMGAFENLHDMESGGALADHLRDAARTCYGTASRAFLSRLVHDRAHDAEGLEKRLKAIRRQFEARFVPPKADGQVRSVAARFALIAGAGELATSYGVLPWKRGEAFHAAGACFAAWFAERGSAGASEDMKAVDQVRGFIEKHGESRFTNIALITPMSEAEGVLAASRTINRVGFKRKVETGGQVRWEYLILREMWKTEVCQGLDAVRAAKAVRDAGYLVTEEGRDLTRKVSIPGEGRPRVYVIRGAILGDDEA
>NC_016027.1|WP_014105601.1|1854337_1854640_-|hypothetical-protein
MSNPSVDFARINSAALASLPALLGRWLPDGKREGHEWVARNPRRSDREPGSFKVNMNTCRWSDFATGDRGGDPVSLAAYLFNIRQGEAASRLVAMLGLGG
>NC_016027.1|WP_014105602.1|1854636_1854909_-|hypothetical-protein
MSGNHSSDAGTRQEMLQAMTRDYLGRLERWISQDPPPLGEGRSIAQCAAFSAMSHLLAIEMQRAGPAAVEVLVGAACVMRDMALGRELQP
>NC_016027.1|WP_014105603.1|1854905_1855313_-|hypothetical-protein
MQTPLYTGHVNGRPLRYFRADDGGLPRHAFLDLLDAAALPEDAKLMFLRMVRNGQWKDDTQVVPTPTGPVVTAPHFMAQGFIGVLGELGMNNDLIDRAYTEGLTSACDALMGDLPPQARFEAIISMGRKHLGVDQ
>NC_016027.1|WP_014105604.1|1855513_1855720_-|excisionase-family-DNA-binding-protein
MDTPVTEFPEYASIAEITARFGISRGTQYRLITDGKIEAVKVGSATRIITATVEKYFTSLPRLKAATR
>NC_016027.1|WP_041247300.1|1855814_1856588_-|hypothetical-protein
MFLQEAPCLRNHADVTADFLRSLSDELGLAPRPGISFGKMAERIAFALDRFALHERRVPEAQRRAEIKQTAIAMQKWAEAGMHMIGNGDVSESTACRETFIWIERYIAQRSPEIAASLAAKVGKQDEGVLAAFRLLPEILNILAGGSTSLLKELGRNPIRKPADLGKRYLVADLKEHFEQLYTARFTISTRHGSARYGVALNWCRAIFAHAAAQAEQSDLPDHVPEFRALQQWAMRSDALPTVIRSINRMRKATKGK
>NC_016027.1|WP_148268569.1|1856590_1856779_-|hypothetical-protein
MTDRTNNQRRQEALQAVADIACLSYLLASASQNKSEPMAHEAVEWAAREIARRTTCIGAGLR
>NC_016027.1|WP_014105606.1|1856775_1857105_-|hypothetical-protein
MSRPARIWSARDLHRIKRLCSDGLTWRQIGEAMGSSSASCHRVWRAHTAPSSLTTPDRLAAIQAATTEISVMAGILARMAEGDKQTGTELAWLADGIGRHANAIEDYIS
>NC_016027.1|WP_041247301.1|1857101_1857350_-|hypothetical-protein
MSCIPNFPERGEYALNWQQHTAQHLRNTLHTLAHDMDMTDEVTMEIKSRWMDVVFWLADFTAKMEAAAQEDVEAVKAGGYKK
>NC_016027.1|WP_041247302.1|1857346_1857580_-|hypothetical-protein
MKDPYDLGRLIVTTENSCNELDRLVHALRLMGSQMMDAADIPAPAPTKEDIGGWADGPYWAAQTLEKIIAGLRRATK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016027_1	1.5\|884255\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884255-884286	32	NC_019337	Acetobacter pasteurianus plasmid pAC258-29, complete sequence	25204-25235	4	0.875
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	438639-438670	5	0.844
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1861185-1861216	6	0.812
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	590753-590784	6	0.812
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1188014-1188045	6	0.812
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	141062-141093	6	0.812
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	244947-244978	6	0.812
NC_016027_1	1.5\|884255\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884255-884286	32	NC_017771	Deinococcus gobiensis I-0 plasmid P3, complete sequence	76292-76323	6	0.812
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	81452-81483	6	0.812
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	CP054921	Streptomyces sp. NA03103 plasmid unnamed1, complete sequence	4978-5009	7	0.781
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	NZ_CP016381	Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence	73521-73552	7	0.781
NC_016027_2	2.6\|890273\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890273-890304	32	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	301868-301899	7	0.781
NC_016027_2	2.14\|890761\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890761-890792	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	80940-80971	7	0.781
NC_016027_2	2.14\|890761\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890761-890792	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1363904-1363935	7	0.781
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	297289-297320	7	0.781
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1162920-1162951	7	0.781
NC_016027_1	1.1\|884011\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884011-884042	32	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	65093-65124	8	0.75
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP024583	Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence	234547-234578	8	0.75
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	952665-952696	8	0.75
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KX443696	Mycobacterium phage Laurie, complete genome	14254-14285	8	0.75
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	NC_022536	Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence	206261-206292	8	0.75
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	NC_022536	Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence	281269-281300	8	0.75
NC_016027_2	2.7\|890334\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890334-890365	32	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	825370-825401	8	0.75
NC_016027_2	2.9\|890456\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890456-890487	32	MK290738	Pectobacterium phage Arno18, complete genome	21442-21473	8	0.75
NC_016027_2	2.9\|890456\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890456-890487	32	MK290737	Pectobacterium phage Arno162, complete genome	21972-22003	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP049911	Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence	121878-121909	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	304953-304984	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NC_005241	Cupriavidus necator H16 megaplasmid pHG1, complete sequence	366166-366197	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP039289	Cupriavidus necator H16 plasmid pHG1, complete sequence	366165-366196	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	63362-63393	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1459664-1459695	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NC_008203	Mycobacterium phage Che12, complete genome	21871-21902	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	MG099947	Mycobacterium phage Ph8s, complete genome	21641-21672	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NC_022058	Mycobacterium phage Adzzy, complete genome	21641-21672	8	0.75
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	DQ398043	Mycobacterium virus Che12, complete genome	21871-21902	8	0.75
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MN234223	Mycobacterium phage Philly, complete genome	12731-12762	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KP027207	Mycobacterium phage Chandler, complete genome	13639-13670	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MN096360	Mycobacterium phage Rita1961, complete genome	12860-12891	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MG839014	Mycobacterium phage RagingRooster, complete genome	12866-12897	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KJ194581	Mycobacterium phage Audrey, complete genome	12865-12896	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KR080203	Mycobacterium phage OrangeOswald, complete genome	12865-12896	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MH513976	Mycobacterium phage Morty007, complete genome	13649-13680	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MH051265	Mycobacterium phage Yahalom, complete genome	12877-12908	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MH316565	Mycobacterium phage Mortcellus, complete genome	13503-13534	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MT310871	Mycobacterium phage Jackstina, complete genome	12791-12822	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MK359357	Mycobacterium phage RomaT, complete genome	13646-13677	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	JF704095	Mycobacterium phage Daisy, complete sequence	12886-12917	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	EU816589	Mycobacterium phage Phaedrus, complete genome	12782-12813	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MN096359	Mycobacterium phage Obutu, complete genome	12860-12891	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MK061414	Mycobacterium phage Marley1013, complete genome	13649-13680	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MT952851	Mycobacterium phage Gervas, complete genome	12848-12879	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MG925353	Mycobacterium phage Nozo, complete genome	13630-13661	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KJ194584	Mycobacterium phage Heathcliff, complete genome	12827-12858	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MN444872	Mycobacterium phage SynergyX, complete genome	12866-12897	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MH576977	Mycobacterium phage Tydolla, complete genome	13603-13634	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MG925338	Mycobacterium phage ChaChing, complete genome	12880-12911	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NC_023742	Mycobacterium phage Akoma, complete genome	12865-12896	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MG920059	Mycobacterium phage Baloo, complete genome	12865-12896	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NC_023686	Mycobacterium phage Gadjet, complete genome	12869-12900	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KR080205	Mycobacterium phage Corofin, complete genome	12890-12921	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NC_041965	Mycobacterium phage Athena, complete genome	13628-13659	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	DQ398049	Mycobacterium phage Pipefish, complete genome	13749-13780	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	KF493879	Mycobacterium phage Bernardo, complete genome	12864-12895	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MT310892	Mycobacterium phage Compostia, complete genome	13298-13329	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	JN699018	Mycobacterium phage Kamiyu, complete genome	12836-12867	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NC_012027	Mycobacterium phage Phlyer, complete genome	13599-13630	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	MN444873	Mycobacterium phage Abinghost, complete genome	12865-12896	9	0.719
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	237629-237660	9	0.719
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	225622-225653	9	0.719
NC_016027_2	2.7\|890334\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890334-890365	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	322455-322486	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	KC139649	Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds	3350-3381	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	MH586730	Salmonella phage Solent, complete genome	4400-4431	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	KY002061	Salmonella phage vB_SenS_Sergei, complete genome	4318-4349	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	KC139636	Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds	3350-3381	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	NC_025443	Salmonella phage 9NA, complete genome	1835-1866	9	0.719
NC_016027_2	2.10\|890517\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890517-890548	32	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	702329-702360	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	19052-19083	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	MT939492	Xanthomonas phage Xoo-sp14, complete genome	175812-175843	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	49214-49245	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	49214-49245	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	49214-49245	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	49214-49245	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	49599-49630	9	0.719
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	MT316461	Streptomyces phage Galactica, complete genome	50065-50096	9	0.719
NC_016027_3	3.3\|900590\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900590-900621	32	MF417925	Uncultured Caudovirales phage clone 3F_9, partial genome	34693-34724	9	0.719
NC_016027_3	3.9\|900956\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900956-900987	32	MG641885	Salmonella phage PMBT28, complete genome	4790-4821	9	0.719
NC_016027_3	3.13\|901200\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	901200-901231	32	MH248138	Erwinia phage vB_EamM_Alexandra, complete genome	17633-17664	9	0.719
NC_016027_3	3.13\|901200\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	901200-901231	32	MW073017	Vibrio phage Va2, complete genome	2700-2731	9	0.719
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP035707	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence	7133-7164	10	0.688
NC_016027_1	1.4\|884194\|32\|NC_016027\|PILER-CR,CRISPRCasFinder,CRT	884194-884225	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	32271-32302	10	0.688
NC_016027_2	2.5\|890212\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890212-890243	32	MT533174	Escherichia phage CJ20, complete genome	78613-78644	10	0.688
NC_016027_2	2.8\|890395\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890395-890426	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	202698-202729	10	0.688
NC_016027_2	2.15\|890822\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	890822-890853	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	62785-62816	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	440841-440872	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	124605-124636	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NC_017060	Rahnella aquatilis HX2 plasmid PRA1, complete sequence	527349-527380	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NC_015062	Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence	529769-529800	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	512547-512578	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	512547-512578	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	470348-470379	10	0.688
NC_016027_3	3.2\|900529\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	900529-900560	32	MT639645	Mycobacterium phage PainterBoy, complete genome	23600-23631	10	0.688
NC_016027_3	3.13\|901200\|32\|NC_016027\|CRISPRCasFinder,CRT,PILER-CR	901200-901231	32	AP013980	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S31-C4, * SEQUENCING IN PROGRESS *	39247-39278	10	0.688

1. spacer 1.5|884255|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_019337 (Acetobacter pasteurianus plasmid pAC258-29, complete sequence) position: , mismatch: 4, identity: 0.875

cctgcttgcgggcatgataggcgtcaaggcgc	CRISPR spacer
cctgcttccgggcatggtaggcgtcaaggcca	Protospacer
******* ********.*************

2. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

cacg-accacgtcgggcagcagttccggcacga	CRISPR spacer
-gcgcaccacggcgggcagcagttccgccacca	Protospacer
 .** ****** *************** *** *

3. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgacaacgcggccatccaggc--atcgtgagc	CRISPR spacer
gccgacagcgcggccatcctggcgaatctcga--	Protospacer
*******.*********** ***  *** .**

4. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.812

gccgacaacgcggccatccaggc--atcgtgagc	CRISPR spacer
gccgacagcgcggccatcctggcgaatctgga--	Protospacer
*******.*********** ***  ***  **

5. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgacaacgcggccatccaggc--atcgtgagc	CRISPR spacer
gccgacagcgcggccatcctggcgaatctgga--	Protospacer
*******.*********** ***  ***  **

6. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgacaacgcggccatccaggc--atcgtgagc	CRISPR spacer
gccgacagcgcggccatcctggcgaatctgga--	Protospacer
*******.*********** ***  ***  **

7. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgacaacgcggccatccaggc--atcgtgagc	CRISPR spacer
gccgacagcgcggccatcctggcgaatctgga--	Protospacer
*******.*********** ***  ***  **

8. spacer 1.5|884255|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_017771 (Deinococcus gobiensis I-0 plasmid P3, complete sequence) position: , mismatch: 6, identity: 0.812

-cctgcttgcgggcatgataggcgtcaaggcgc	CRISPR spacer
gcctg-tcgcgggcatgttcggcgtcaaggccg	Protospacer
 **** *.********* * ***********

9. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gaagaccacgtcgggccgcagttccgccaccg	Protospacer
 * ************* ********* *** .

10. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to CP054921 (Streptomyces sp. NA03103 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgacaacgcggccatccaggc-atcgtgagc	CRISPR spacer
gccgacgactcggccatccaggcggccatgcg-	Protospacer
******.** ************* ..*.** *

11. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016381 (Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence) position: , mismatch: 7, identity: 0.781

tcctgcgtgaaggtggtcagcttgcc---ttccag	CRISPR spacer
tgctgggtgacggtggtcagcttgccggagtc---	Protospacer
* *** **** ***************    **

12. spacer 2.6|890273|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 7, identity: 0.781

cacaacggcatgtcgggcgttgccccagccgt	CRISPR spacer
cacgcgagcatgtcgggcctcgccccagccgg	Protospacer
***.  .*********** *.**********

13. spacer 2.14|890761|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

cagggacc---ggcgctgttcgtatgtcacagcct	CRISPR spacer
---ggcccggaggcgctgttcgtctgtaacagccc	Protospacer
   ** **   ************ *** ******.

14. spacer 2.14|890761|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

cagggacc---ggcgctgttcgtatgtcacagcct	CRISPR spacer
---ggcccggaggcgctgttcgtgtgtaacagccc	Protospacer
   ** **   ************.*** ******.

15. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gatcaccacgtcggacagcagttccggcggca	Protospacer
 *. **********.*************.  *

16. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cacgaccacgtcgggcagcagtt-ccggcacga	CRISPR spacer
cacgacgacctcgggcagcagttgaccgcgct-	Protospacer
****** ** *************  * **.*

17. spacer 1.1|884011|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 8, identity: 0.75

atcaccgttcttgattcgccgctgacctctgg	CRISPR spacer
cttaccgttcttgtttcgccgctgacaatgcg	Protospacer
 *.********** ************  .  *

18. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024583 (Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gccgacaacgcggccatccaggca-tcgtgagc	CRISPR spacer
gccgacgacacggccatccaggcgcccaccag-	Protospacer
******.**.*************. .*.. **

19. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gccgacaacgcggccatccaggcatcgtgagc-----	CRISPR spacer
gccgacagcgcggccatcctggc-----gaacctgga	Protospacer
*******.*********** ***     **.*

20. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KX443696 (Mycobacterium phage Laurie, complete genome) position: , mismatch: 8, identity: 0.75

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgcgctggt	Protospacer
************.***** ****  **. .*.

21. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_022536 (Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence) position: , mismatch: 8, identity: 0.75

tcctgcgtgaaggtggtcagcttgccttccag	CRISPR spacer
tgccgcgtgaaggtggtcagattgtctctgac	Protospacer
* *.**************** ***.**.. *

22. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_022536 (Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence) position: , mismatch: 8, identity: 0.75

tcctgcgtgaaggtggtcagcttgccttccag	CRISPR spacer
tgccgcgtgaaggtggtcagattgtctctgac	Protospacer
* *.**************** ***.**.. *

23. spacer 2.7|890334|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 8, identity: 0.75

agatgccgaccgatctgcgtcagtgcacccag	CRISPR spacer
acgagtggcccgatctgggtcactgcacccag	Protospacer
* . *. * ******** **** *********

24. spacer 2.9|890456|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MK290738 (Pectobacterium phage Arno18, complete genome) position: , mismatch: 8, identity: 0.75

ttcaaaacgaagttcgtaaaatagcagatttc	CRISPR spacer
gtcaaaacgaagttggtaagatagtgactctc	Protospacer
 ************* ****.****... *.**

25. spacer 2.9|890456|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 8, identity: 0.75

ttcaaaacgaagttcgtaaaatagcagatttc	CRISPR spacer
gtcaaaacgaagttggtaagatagtgactctc	Protospacer
 ************* ****.****... *.**

26. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049911 (Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ggtgaccacctcgggcagcagatccggcgcag	Protospacer
 ..****** *********** ******.*..

27. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ctgcggcacgtcgggcggcagttccggcgcgg	Protospacer
*   . **********.***********.**.

28. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_005241 (Cupriavidus necator H16 megaplasmid pHG1, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gatcacgacgtcggacagcagttccggcggca	Protospacer
 *. ** *******.*************.  *

29. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039289 (Cupriavidus necator H16 plasmid pHG1, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gatcacgacgtcggacagcagttccggcggca	Protospacer
 *. ** *******.*************.  *

30. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ggcctcaacggcgggccgcagttccggcacaa	Protospacer
 .*  * *** ***** *************.*

31. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

cacgaccacgtcg---ggcagcagttccggcacga	CRISPR spacer
---gttctcgtcgtccgtcagcagttccggcacgc	Protospacer
   * .* *****   * ****************

32. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_008203 (Mycobacterium phage Che12, complete genome) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ctcgactacgtcgggcagcagctccttgaagc	Protospacer
* ****.**************.***   * *

33. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MG099947 (Mycobacterium phage Ph8s, complete genome) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ctcgactacgtcgggcagcagctccttgaagc	Protospacer
* ****.**************.***   * *

34. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_022058 (Mycobacterium phage Adzzy, complete genome) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ctcgactacgtcgggcagcagctccttgaagc	Protospacer
* ****.**************.***   * *

35. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to DQ398043 (Mycobacterium virus Che12, complete genome) position: , mismatch: 8, identity: 0.75

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
ctcgactacgtcgggcagcagctccttgaagc	Protospacer
* ****.**************.***   * *

36. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MN234223 (Mycobacterium phage Philly, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

37. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KP027207 (Mycobacterium phage Chandler, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

38. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MN096360 (Mycobacterium phage Rita1961, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

39. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MG839014 (Mycobacterium phage RagingRooster, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

40. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KJ194581 (Mycobacterium phage Audrey, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

41. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KR080203 (Mycobacterium phage OrangeOswald, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

42. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MH513976 (Mycobacterium phage Morty007, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

43. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MH051265 (Mycobacterium phage Yahalom, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

44. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MH316565 (Mycobacterium phage Mortcellus, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

45. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MT310871 (Mycobacterium phage Jackstina, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

46. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MK359357 (Mycobacterium phage RomaT, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

47. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to JF704095 (Mycobacterium phage Daisy, complete sequence) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

48. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to EU816589 (Mycobacterium phage Phaedrus, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

49. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MN096359 (Mycobacterium phage Obutu, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

50. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MK061414 (Mycobacterium phage Marley1013, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

51. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MT952851 (Mycobacterium phage Gervas, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

52. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MG925353 (Mycobacterium phage Nozo, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

53. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KJ194584 (Mycobacterium phage Heathcliff, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

54. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MN444872 (Mycobacterium phage SynergyX, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

55. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MH576977 (Mycobacterium phage Tydolla, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

56. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MG925338 (Mycobacterium phage ChaChing, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

57. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_023742 (Mycobacterium phage Akoma, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

58. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MG920059 (Mycobacterium phage Baloo, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

59. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_023686 (Mycobacterium phage Gadjet, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

60. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KR080205 (Mycobacterium phage Corofin, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

61. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_041965 (Mycobacterium phage Athena, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

62. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to DQ398049 (Mycobacterium phage Pipefish, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

63. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to KF493879 (Mycobacterium phage Bernardo, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

64. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MT310892 (Mycobacterium phage Compostia, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

65. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to JN699018 (Mycobacterium phage Kamiyu, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

66. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NC_012027 (Mycobacterium phage Phlyer, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

67. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to MN444873 (Mycobacterium phage Abinghost, complete genome) position: , mismatch: 9, identity: 0.719

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgacaacgcgaccatcaaggccgctctcgt	Protospacer
************.***** ****  * .  *.

68. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 9, identity: 0.719

tcctgcgtgaaggtggtcagcttgccttccag----	CRISPR spacer
tcctgcgagaaggtggtgagct----tcctggtgct	Protospacer
******* ********* ****    *.*..*

69. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 9, identity: 0.719

tcctgcgtgaaggtggtcagcttgccttccag----	CRISPR spacer
tcctgcgagaaggtggtgagct----tcctggtgct	Protospacer
******* ********* ****    *.*..*

70. spacer 2.7|890334|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

agatgccgaccgatctgcgtcagtgcacccag	CRISPR spacer
ctgcccgaaccgatctgcatcagtgcgcccag	Protospacer
  .. * .**********.*******.*****

71. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
taggtaatccagttggtgaaatcattgaacgc	Protospacer
. . . * **** **********.********

72. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MH586730 (Salmonella phage Solent, complete genome) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
taggtaatccagttggtgaaatcattgaacgc	Protospacer
. . . * **** **********.********

73. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to KY002061 (Salmonella phage vB_SenS_Sergei, complete genome) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
taggtaatccagttggtgaaatcattgaacgc	Protospacer
. . . * **** **********.********

74. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
taggtaatccagttggtgaaatcattgaacgc	Protospacer
. . . * **** **********.********

75. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
taggtaatccagttggtgaaatcattgaacgc	Protospacer
. . . * **** **********.********

76. spacer 2.10|890517|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 9, identity: 0.719

ctatccagccaggtggtgaaatcgttgaacgc	CRISPR spacer
acctgcagccagctggtgaaatcgtggatcca	Protospacer
 . * ******* ************ ** *

77. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
atcgaccacctcgggcagcagttccttggggg	Protospacer
  ******* ***************   . *.

78. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 9, identity: 0.719

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gccgaccacgtccggcagcaggtccgtcggac	Protospacer
  ********** ******** **** *. .

79. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 9, identity: 0.719

-----cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gttctcgc-----cgtccgtcagcagttccggcacgc	Protospacer
     *.*     **** * ****************

80. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 9, identity: 0.719

-----cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gttctcgc-----cgtccgtcagcagttccggcacgc	Protospacer
     *.*     **** * ****************

81. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 9, identity: 0.719

-----cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gttctcgc-----cgtccgtcagcagttccggcacgc	Protospacer
     *.*     **** * ****************

82. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 9, identity: 0.719

-----cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gttctcgc-----cgtccgtcagcagttccggcacgc	Protospacer
     *.*     **** * ****************

83. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 9, identity: 0.719

-----cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gttctcgc-----cgtccgtcagcagttccggcacgc	Protospacer
     *.*     **** * ****************

84. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MT316461 (Streptomyces phage Galactica, complete genome) position: , mismatch: 9, identity: 0.719

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
attgagggcgtcgggcagcaggtccggcgcgg	Protospacer
  .**  .************* ******.**.

85. spacer 3.3|900590|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MF417925 (Uncultured Caudovirales phage clone 3F_9, partial genome) position: , mismatch: 9, identity: 0.719

gagccacacaacaattacaaccggcactacta	CRISPR spacer
cactcgcacaacaataacaatcggcactaagt	Protospacer
 * .*.********* ****.********

86. spacer 3.9|900956|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MG641885 (Salmonella phage PMBT28, complete genome) position: , mismatch: 9, identity: 0.719

tctgccgccacctgtgtggacacccacgggcg	CRISPR spacer
accgccgccacctttgtggccacccataccag	Protospacer
 *.********** ***** ******..   *

87. spacer 3.13|901200|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MH248138 (Erwinia phage vB_EamM_Alexandra, complete genome) position: , mismatch: 9, identity: 0.719

gaggcacctgtaggtgctggcaagtcggtaat	CRISPR spacer
ttaggacctgttggtgttggcaagtcggctgt	Protospacer
  .* ****** ****.***********. .*

88. spacer 3.13|901200|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MW073017 (Vibrio phage Va2, complete genome) position: , mismatch: 9, identity: 0.719

gaggcacctgtaggtgctggcaagtcggtaat	CRISPR spacer
caggcacctataggtgcaggcaagacaactct	Protospacer
 ********.******* ****** *...  *

89. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035707 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence) position: , mismatch: 10, identity: 0.688

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
cggaacagcgcggccacccaggcatcgacctc	Protospacer
   .***.********.**********    *

90. spacer 1.4|884194|32|NC_016027|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 10, identity: 0.688

gccgacaacgcggccatccaggcatcgtgagc	CRISPR spacer
gccgactacgcggccatcctggctctcgtcac	Protospacer
****** ************ *** ..    .*

91. spacer 2.5|890212|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MT533174 (Escherichia phage CJ20, complete genome) position: , mismatch: 10, identity: 0.688

tcctgcgtgaaggtggtcagcttgccttccag	CRISPR spacer
gcctgcgcgaagttggtcagcttgttccttgg	Protospacer
 ******.**** ***********.......*

92. spacer 2.8|890395|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 10, identity: 0.688

cacgattgcacggcgctgggccgcagatagaa	CRISPR spacer
tccgattgcacggggctgcgccgcattgcgct	Protospacer
. *********** **** ******    *

93. spacer 2.15|890822|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcgcacgtcaccatgcaatgcagcatcgcc	CRISPR spacer
accaaaacttcaccatgcaatgcatcatcaaa	Protospacer
 *  . ** *************** ****.

94. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

95. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

96. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

97. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

98. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

99. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

100. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
tggcgacacgtcgggcaggacttccggcatgc	Protospacer
..  . ************ * ********.*

101. spacer 3.2|900529|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to MT639645 (Mycobacterium phage PainterBoy, complete genome) position: , mismatch: 10, identity: 0.688

cacgaccacgtcgggcagcagttccggcacga	CRISPR spacer
gtcgatcacgtcgggcagcaggtccttgaacc	Protospacer
  ***.*************** ***   *

102. spacer 3.13|901200|32|NC_016027|CRISPRCasFinder,CRT,PILER-CR matches to AP013980 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S31-C4, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

gaggcacctgtaggtgctggcaagtcggtaat	CRISPR spacer
cgtgcatctgtaggtgctggaaagtcaactaa	Protospacer
 . ***.************* *****... *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

68117 : 138037

Burkholderia_virus(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014104060.1\|68117_69197_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014104061.1\|69475_71275_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_014104062.1\|71271_73632_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_014104060.1\|74464_75544_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041247491.1\|78155_78410_-	hypothetical protein	NA	NA	NA	NA
WP_014104069.1\|79552_81013_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_014104070.1\|81031_81409_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_158309202.1\|81482_82955_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_014104072.1\|83030_84359_-	DUF3100 domain-containing protein	NA	NA	NA	NA
WP_014104073.1\|84425_85316_-	VOC family protein	NA	NA	NA	NA
WP_014104074.1\|85329_86067_-	serine acetyltransferase	NA	NA	NA	NA
WP_014104075.1\|86072_86954_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_158309203.1\|87097_88024_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.5e-05	24.4
WP_014104077.1\|88124_89537_-	amidohydrolase	NA	NA	NA	NA
WP_041247023.1\|89575_90730_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_014104079.1\|90804_91284_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_158309204.1\|91348_92629_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.7e-50	35.0
WP_014104081.1\|92979_94140_+	amidohydrolase	NA	NA	NA	NA
WP_041247497.1\|94170_95505_-	gluconate permease	NA	NA	NA	NA
WP_014104083.1\|95555_97037_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_193360662.1\|97090_97462_-	RidA family protein	NA	NA	NA	NA
WP_014104085.1\|97496_98564_-	D-TA family PLP-dependent enzyme	NA	NA	NA	NA
WP_158309205.1\|98743_99721_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014104087.1\|99942_100953_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_050856073.1\|102027_102777_+	DMT family transporter	NA	NA	NA	NA
WP_014104091.1\|102844_104305_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_014104092.1\|104320_105307_-	GTP-binding protein	NA	NA	NA	NA
WP_014104093.1\|105303_106794_-	amidohydrolase family protein	NA	NA	NA	NA
WP_014104094.1\|106860_108183_-	CapA family protein	NA	NA	NA	NA
WP_050856074.1\|108277_110686_-	TonB-dependent receptor	NA	NA	NA	NA
WP_014104096.1\|111289_112627_+	MFS transporter	NA	NA	NA	NA
WP_014104098.1\|113605_114565_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014104099.1\|114599_115487_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_014104100.1\|115622_116834_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_014104101.1\|116830_118063_+	Zn-dependent hydrolase	NA	NA	NA	NA
WP_014104102.1\|118082_118988_+	N-carbamoyl-D-amino-acid hydrolase	NA	NA	NA	NA
WP_014104103.1\|119280_120771_+	amidase	NA	NA	NA	NA
WP_041247501.1\|120860_122114_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_158309206.1\|122175_123432_+	MFS transporter	NA	NA	NA	NA
WP_014104106.1\|123542_123812_+\|transposase	transposase	NA	NA	NA	NA
WP_014104109.1\|124536_125760_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	43.8
WP_014104112.1\|126791_128240_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041247028.1\|128614_129538_+	AMP-binding protein	NA	NA	NA	NA
WP_014104114.1\|129822_130830_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_041247029.1\|130895_132227_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.9e-36	29.8
WP_014104116.1\|132255_133017_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_014104117.1\|133035_133965_+	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	2.1e-18	25.9
WP_014104118.1\|134267_135758_+	carbohydrate porin	NA	NA	NA	NA
WP_081477854.1\|136756_137119_+	hypothetical protein	NA	NA	NA	NA
WP_148268513.1\|137199_138037_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

212156 : 244241

Leptospira_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007400224.1\|212156_212516_+\|transposase	transposase	NA	NA	NA	NA
WP_010510701.1\|212512_212860_+	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	1.6e-11	46.8
WP_007397838.1\|212923_214534_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_041247514.1\|215153_215534_+	hypothetical protein	NA	NA	NA	NA
WP_014104181.1\|215545_216799_+	TolC family protein	NA	NA	NA	NA
WP_041247039.1\|216795_217947_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014104183.1\|217946_221021_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_014104184.1\|221020_221692_+	response regulator transcription factor	NA	NA	NA	NA
WP_014104185.1\|221688_223041_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_014104186.1\|223089_223659_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_014104187.1\|223648_224356_+	VIT family protein	NA	NA	NA	NA
WP_158309208.1\|224791_224938_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014104188.1\|224910_225123_+	hypothetical protein	NA	NA	NA	NA
WP_014104060.1\|225233_226313_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014104189.1\|226290_226806_-	hypothetical protein	NA	NA	NA	NA
WP_014104190.1\|226802_227333_-	heme NO-binding domain-containing protein	NA	NA	NA	NA
WP_014104192.1\|228429_228939_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014104193.1\|229179_230520_-	MFS transporter	NA	NA	NA	NA
WP_041247040.1\|230547_232212_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_148268610.1\|232254_233331_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_014104196.1\|233348_234413_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_014104197.1\|234409_235345_-	TIM barrel protein	NA	NA	NA	NA
WP_014104198.1\|235401_236478_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_081477913.1\|236933_239054_+	HAD-IIIC family phosphatase	NA	NA	NA	NA
WP_014104201.1\|239132_240872_+	glycosyltransferase family 61 protein	NA	NA	NA	NA
WP_007397838.1\|241863_243474_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_010510701.1\|243537_243885_-	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	1.6e-11	46.8
WP_007400224.1\|243881_244241_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1365195 : 1397804

Planktothrix_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014105152.1\|1365195_1366275_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041247226.1\|1366497_1366680_+	hypothetical protein	NA	NA	NA	NA
WP_041247227.1\|1366768_1367671_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_193360659.1\|1368451_1369208_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012812328.1\|1369337_1370588_-\|transposase	IS701-like element IS1452 family transposase	NA	NA	NA	NA
WP_148268543.1\|1370697_1371454_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014105161.1\|1373086_1374115_-	methionine synthase	NA	NA	NA	NA
WP_014105162.1\|1374141_1375125_-	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_041247229.1\|1377308_1377794_+	hypothetical protein	NA	NA	NA	NA
WP_041247230.1\|1377774_1378254_+	hypothetical protein	NA	NA	NA	NA
WP_148268544.1\|1378791_1379157_+	hypothetical protein	NA	NA	NA	NA
WP_041247231.1\|1379233_1379755_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_014105164.1\|1379822_1380914_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_041247663.1\|1380921_1382004_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
WP_014105166.1\|1382345_1383104_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-13	28.2
WP_193360673.1\|1383100_1384072_-	iron ABC transporter permease	NA	NA	NA	NA
WP_193360674.1\|1384104_1384932_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014105169.1\|1384945_1387045_-	TonB-dependent receptor	NA	NA	NA	NA
WP_041247664.1\|1387984_1388452_+	hypothetical protein	NA	NA	NA	NA
WP_014105171.1\|1388456_1389911_+	cobyric acid synthase	NA	NA	NA	NA
WP_014105173.1\|1390752_1391076_-	hypothetical protein	NA	NA	NA	NA
WP_193360675.1\|1391041_1391380_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_014105174.1\|1391500_1392406_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
WP_148268646.1\|1392919_1394272_-	carbohydrate porin	NA	NA	NA	NA
WP_158309222.1\|1395072_1395246_-	hypothetical protein	NA	NA	NA	NA
WP_012812328.1\|1395687_1396938_-\|transposase	IS701-like element IS1452 family transposase	NA	NA	NA	NA
WP_148268546.1\|1397047_1397804_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1712362 : 1795344

108

Pseudomonas_phage(12.5%)

integrase,capsid,head,terminase,portal,transposase,tail,plate,protease

attL 1705844:1705864|attR 1788496:1788516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1705844:1705864	attL	NA	NA	NA	NA
WP_014105446.1\|1712362_1712539_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_148268559.1\|1712645_1713173_-	hypothetical protein	NA	NA	NA	NA
WP_041247719.1\|1713304_1713883_-	hypothetical protein	NA	NA	NA	NA
WP_148268560.1\|1714272_1715190_+	hypothetical protein	NA	NA	NA	NA
WP_193360638.1\|1715339_1715813_-	hypothetical protein	NA	NA	NA	NA
WP_014105451.1\|1715955_1717152_+	galactose mutarotase	NA	NA	NA	NA
WP_014105452.1\|1717232_1717406_+	hypothetical protein	NA	NA	NA	NA
WP_041247271.1\|1717430_1717622_-	hypothetical protein	NA	NA	NA	NA
WP_167537196.1\|1717978_1718155_-	hypothetical protein	NA	NA	NA	NA
WP_167537197.1\|1718370_1718532_+	hypothetical protein	NA	NA	NA	NA
WP_014105456.1\|1718562_1719048_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_167537198.1\|1719281_1719458_+	hypothetical protein	NA	NA	NA	NA
WP_014105458.1\|1719770_1720103_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_014105459.1\|1720106_1720295_-	hypothetical protein	NA	NA	NA	NA
WP_041247721.1\|1720628_1721681_-	restriction endonuclease	NA	NA	NA	NA
WP_014105461.1\|1721811_1722417_+	lipase	NA	NA	NA	NA
WP_014105462.1\|1722533_1722929_+	hypothetical protein	NA	NA	NA	NA
WP_014105463.1\|1722943_1724599_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_014105464.1\|1724839_1726060_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_041247273.1\|1726194_1727454_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_014105466.1\|1728293_1728770_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_014105467.1\|1728807_1729473_-	DedA family protein	NA	NA	NA	NA
WP_014105468.1\|1729716_1730358_-	5,6-dimethylbenzimidazole synthase	NA	NA	NA	NA
WP_148268657.1\|1730372_1730957_-	hypothetical protein	NA	NA	NA	NA
WP_014105470.1\|1731141_1731372_-	hypothetical protein	NA	NA	NA	NA
WP_014105471.1\|1731558_1732428_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_041247274.1\|1733169_1733607_-	CHRD domain-containing protein	NA	NA	NA	NA
WP_158309224.1\|1733752_1733896_-	hypothetical protein	NA	NA	NA	NA
WP_014105475.1\|1734878_1735229_-	RidA family protein	NA	NA	NA	NA
WP_014105479.1\|1736505_1737333_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_014105480.1\|1737704_1738934_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	5.3e-118	53.9
WP_014105481.1\|1738922_1739123_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_014105482.1\|1739124_1739373_-	hypothetical protein	NA	NA	NA	NA
WP_148268561.1\|1739369_1739969_-	hypothetical protein	NA	NA	NA	NA
WP_158309225.1\|1739965_1740136_-	hypothetical protein	NA	NA	NA	NA
WP_014105485.1\|1740269_1740482_-	hypothetical protein	NA	NA	NA	NA
WP_041247277.1\|1740481_1742122_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	3.5e-08	27.8
WP_014105487.1\|1742118_1742364_-	hypothetical protein	NA	NA	NA	NA
WP_014105488.1\|1742350_1742614_-	hypothetical protein	NA	NA	NA	NA
WP_041247278.1\|1742812_1743190_-	hypothetical protein	NA	NA	NA	NA
WP_014105489.1\|1743305_1743755_-	hypothetical protein	NA	NA	NA	NA
WP_025437313.1\|1743751_1744096_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081477930.1\|1744187_1744412_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014105490.1\|1744408_1744705_+	hypothetical protein	NA	NA	NA	NA
WP_014105491.1\|1744864_1745218_+	hypothetical protein	NA	NA	NA	NA
WP_014105492.1\|1745214_1745427_+	hypothetical protein	NA	NA	NA	NA
WP_041247729.1\|1745468_1746455_+	toprim domain-containing protein	A0A0U4B0G9	Pseudomonas_phage	1.6e-16	40.5
WP_014105494.1\|1746441_1748286_+	hypothetical protein	NA	NA	NA	NA
WP_014106060.1\|1748562_1748865_+	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	1.2e-18	54.4
WP_014105496.1\|1748864_1749503_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014105497.1\|1749523_1750093_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_014105498.1\|1750092_1751730_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.7e-95	38.6
WP_014105499.1\|1751736_1753056_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	4.3e-57	35.6
WP_014105500.1\|1753058_1753757_+\|head,protease	HK97 family phage prohead protease	A0A218MM23	uncultured_virus	2.2e-12	34.9
WP_014105501.1\|1753798_1755337_+\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	6.1e-55	35.2
WP_014105502.1\|1755378_1755681_+	hypothetical protein	NA	NA	NA	NA
WP_014105503.1\|1755680_1756325_+\|head,tail	phage head-tail connector protein	H9YSG3	environmental_Halophage	5.5e-10	31.4
WP_014105504.1\|1756317_1756719_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_014105505.1\|1756705_1757245_+	hypothetical protein	NA	NA	NA	NA
WP_014105506.1\|1757241_1757805_+	hypothetical protein	Q8W624	Enterobacteria_phage	2.4e-17	34.1
WP_014105507.1\|1757804_1758056_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_014105508.1\|1758052_1759528_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	4.0e-64	36.2
WP_014105509.1\|1759537_1759915_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_014105510.1\|1759911_1760223_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014105511.1\|1760340_1762566_+	lytic transglycosylase domain-containing protein	A0A1P8VV74	Rathayibacter_phage	4.1e-12	27.9
WP_014105512.1\|1762566_1763871_+	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	1.9e-17	25.9
WP_014105513.1\|1763867_1765016_+\|tail	tail protein	NA	NA	NA	NA
WP_014105514.1\|1765015_1765492_+\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_014105515.1\|1765488_1765968_+	phage GP46 family protein	NA	NA	NA	NA
WP_014105516.1\|1765939_1767055_+\|plate	baseplate J/gp47 family protein	C9DGQ6	Escherichia_phage	3.9e-27	30.4
WP_014105517.1\|1767054_1767651_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_014105518.1\|1767657_1769634_+	hypothetical protein	NA	NA	NA	NA
WP_014105519.1\|1769633_1770047_+	hypothetical protein	NA	NA	NA	NA
WP_014105520.1\|1770043_1770514_+	hypothetical protein	A0A0M4RBJ6	Mycobacterium_phage	1.8e-05	39.1
WP_014105521.1\|1770613_1770916_+	hypothetical protein	NA	NA	NA	NA
WP_041247283.1\|1770918_1771404_+	hypothetical protein	A0A1B2ANT4	Pseudoalteromonas_phage	4.3e-15	37.3
WP_050856162.1\|1771766_1772159_+	hypothetical protein	NA	NA	NA	NA
WP_014105524.1\|1772162_1772363_+	hypothetical protein	NA	NA	NA	NA
WP_158309226.1\|1772438_1772597_-	hypothetical protein	NA	NA	NA	NA
WP_014105526.1\|1772621_1773620_+	hypothetical protein	NA	NA	NA	NA
WP_014105527.1\|1773633_1774074_+	hypothetical protein	NA	NA	NA	NA
WP_014105528.1\|1774253_1774802_-	hypothetical protein	A0A088C495	Shewanella_sp._phage	1.5e-11	33.5
WP_014105529.1\|1774801_1775473_-	hypothetical protein	NA	NA	NA	NA
WP_014105530.1\|1775472_1776306_-	DUF2213 domain-containing protein	E2GLV5	Acinetobacter_phage	3.7e-30	36.4
WP_148268658.1\|1776299_1777721_-	hypothetical protein	NA	NA	NA	NA
WP_014105532.1\|1777735_1778092_-	hypothetical protein	NA	NA	NA	NA
WP_014105533.1\|1778220_1778796_-	recombinase family protein	M9Q1K0	Clostridium_phage	4.8e-29	45.3
WP_148268659.1\|1779301_1780678_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	3.7e-112	47.7
WP_014105535.1\|1780716_1781520_-	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_014105536.1\|1781516_1782377_-	hypothetical protein	NA	NA	NA	NA
WP_158309227.1\|1782373_1782514_-	hypothetical protein	NA	NA	NA	NA
WP_014105537.1\|1782706_1782904_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148268563.1\|1783051_1783684_-	hypothetical protein	NA	NA	NA	NA
WP_041247285.1\|1784021_1784270_-	hypothetical protein	NA	NA	NA	NA
WP_041247286.1\|1784266_1784500_-	hypothetical protein	NA	NA	NA	NA
WP_014105608.1\|1784496_1784757_-	hypothetical protein	NA	NA	NA	NA
WP_041247287.1\|1784753_1784951_-	hypothetical protein	NA	NA	NA	NA
WP_041247747.1\|1785346_1785586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014105540.1\|1785582_1786302_+	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	6.1e-58	47.2
WP_014105541.1\|1786298_1786766_+	hypothetical protein	Q71TB7	Escherichia_phage	7.0e-23	37.7
WP_014105542.1\|1786981_1788193_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.6e-87	45.1
WP_014105543.1\|1789123_1789570_+	cupin domain-containing protein	NA	NA	NA	NA
1788496:1788516	attR	NA	NA	NA	NA
WP_014105544.1\|1789776_1792335_+	EAL domain-containing protein	NA	NA	NA	NA
WP_158309228.1\|1792595_1792751_+	hypothetical protein	NA	NA	NA	NA
WP_014105545.1\|1792812_1793364_-	hypothetical protein	NA	NA	NA	NA
WP_014105189.1\|1793547_1793937_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014105546.1\|1793885_1794098_+	hypothetical protein	NA	NA	NA	NA
WP_014104109.1\|1794120_1795344_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	43.8

DBSCAN-SWA_5

1826834 : 1954084

113

Planktothrix_phage(11.11%)

transposase,tRNA,integrase

attL 1835332:1835349|attR 1955195:1955212

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148268566.1\|1826834_1827149_+\|transposase	transposase	NA	NA	NA	NA
WP_041247293.1\|1827244_1827874_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_014105576.1\|1828176_1828365_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_014105577.1\|1828372_1829014_+	glutaredoxin 2	NA	NA	NA	NA
WP_014105578.1\|1829110_1829314_+	hypothetical protein	NA	NA	NA	NA
WP_014105581.1\|1830458_1831859_-	deoxyribodipyrimidine photo-lyase	F2Y1K1	Organic_Lake_phycodnavirus	9.1e-50	30.0
WP_167537204.1\|1831952_1832207_-	hypothetical protein	NA	NA	NA	NA
WP_014105583.1\|1832509_1832863_+	hypothetical protein	NA	NA	NA	NA
WP_041247294.1\|1832965_1833730_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014105585.1\|1833756_1834071_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_041247295.1\|1834141_1835353_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
1835332:1835349	attL	NA	NA	NA	NA
WP_014105587.1\|1835452_1836907_-	class II fumarate hydratase	NA	NA	NA	NA
1835332:1835349	attL	NA	NA	NA	NA
WP_014105588.1\|1837088_1837718_-	LysE family translocator	NA	NA	NA	NA
WP_014105590.1\|1838779_1839643_+	metal ABC transporter permease	NA	NA	NA	NA
WP_014105591.1\|1839656_1840553_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_193360639.1\|1840524_1842294_-	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	2.4e-07	26.5
WP_041247296.1\|1842678_1843128_+	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_014105594.1\|1843200_1844880_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041247297.1\|1844894_1845524_-	SCO family protein	NA	NA	NA	NA
WP_014105596.1\|1845523_1848298_-	DNA polymerase I	A7XX31	Thermus_virus	1.4e-54	33.1
WP_014105597.1\|1848312_1848528_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_148268567.1\|1848600_1849686_+	alpha/beta fold hydrolase	A0A0G3G493	Raccoon_poxvirus	1.4e-05	25.3
WP_014105599.1\|1850165_1850726_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.5e-31	43.0
WP_014105600.1\|1851736_1854334_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.1e-61	33.0
WP_014105601.1\|1854337_1854640_-	hypothetical protein	I6S1U6	Salmonella_phage	9.5e-05	42.5
WP_014105602.1\|1854636_1854909_-	hypothetical protein	NA	NA	NA	NA
WP_014105603.1\|1854905_1855313_-	hypothetical protein	NA	NA	NA	NA
WP_014105604.1\|1855513_1855720_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_041247300.1\|1855814_1856588_-	hypothetical protein	NA	NA	NA	NA
WP_148268569.1\|1856590_1856779_-	hypothetical protein	NA	NA	NA	NA
WP_014105606.1\|1856775_1857105_-	hypothetical protein	NA	NA	NA	NA
WP_041247301.1\|1857101_1857350_-	hypothetical protein	NA	NA	NA	NA
WP_041247302.1\|1857346_1857580_-	hypothetical protein	NA	NA	NA	NA
WP_014105608.1\|1857576_1857837_-	hypothetical protein	NA	NA	NA	NA
WP_041247287.1\|1857833_1858031_-	hypothetical protein	NA	NA	NA	NA
WP_050856109.1\|1858027_1858273_-	hypothetical protein	NA	NA	NA	NA
WP_148268661.1\|1858464_1858914_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041247303.1\|1859018_1859633_+	hypothetical protein	NA	NA	NA	NA
WP_148268570.1\|1859664_1859904_+	hypothetical protein	NA	NA	NA	NA
WP_041247304.1\|1860427_1860727_-	HigA family addiction module antidote protein	A0A2P1MXE5	Escherichia_phage	1.1e-05	36.8
WP_014105611.1\|1860866_1861271_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_041247305.1\|1861254_1861467_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_014105613.1\|1861757_1862975_-\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	2.9e-92	46.9
WP_041247756.1\|1863639_1864188_+	hypothetical protein	NA	NA	NA	NA
WP_041247757.1\|1864336_1866070_+	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_041247306.1\|1866162_1867608_+	cardiolipin synthase	NA	NA	NA	NA
WP_041247307.1\|1867722_1867974_+	hypothetical protein	NA	NA	NA	NA
WP_148268520.1\|1868997_1869755_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014105619.1\|1870930_1873105_+	TonB-dependent receptor	NA	NA	NA	NA
WP_014105620.1\|1873133_1873448_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_014104109.1\|1874298_1875522_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	43.8
WP_041247760.1\|1875966_1876212_+	hypothetical protein	NA	NA	NA	NA
WP_007397838.1\|1876212_1877823_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_010510701.1\|1877886_1878234_-	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	1.6e-11	46.8
WP_007400224.1\|1878230_1878590_-\|transposase	transposase	NA	NA	NA	NA
WP_193360693.1\|1878752_1879145_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_167537200.1\|1879443_1879608_+	hypothetical protein	NA	NA	NA	NA
WP_014105627.1\|1888025_1890629_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.7e-118	36.7
1890487:1890504	attR	NA	NA	NA	NA
WP_041247309.1\|1891065_1892130_-	aldo/keto reductase	NA	NA	NA	NA
1890487:1890504	attR	NA	NA	NA	NA
WP_014105629.1\|1892314_1893007_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_014105630.1\|1893224_1894244_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_041247310.1\|1894295_1894811_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_041247311.1\|1894913_1896737_-	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.9e-49	29.3
WP_014105633.1\|1896806_1897841_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_014105634.1\|1897839_1898748_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_014105635.1\|1898737_1899706_-	cation transporter	NA	NA	NA	NA
WP_014105636.1\|1899847_1900699_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_014105637.1\|1900695_1901499_+	NAD kinase	NA	NA	NA	NA
WP_148268662.1\|1901608_1902304_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_014105639.1\|1902327_1902816_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_014105640.1\|1902853_1903318_-	hypothetical protein	NA	NA	NA	NA
WP_014105641.1\|1903317_1904289_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_014105642.1\|1904396_1905509_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_014105643.1\|1905607_1905865_+	hypothetical protein	NA	NA	NA	NA
WP_014105644.1\|1905905_1906331_+	hypothetical protein	NA	NA	NA	NA
WP_041247313.1\|1906514_1906994_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_010510087.1\|1907214_1907409_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_014105647.1\|1907436_1908348_+	HlyD family secretion protein	NA	NA	NA	NA
WP_014105648.1\|1908363_1909881_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_014104060.1\|1911099_1912179_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014105650.1\|1912380_1914051_+	AAA family ATPase	NA	NA	NA	NA
WP_081477885.1\|1914280_1914625_-	endoribonuclease MazF	Q708N9	Streptococcus_phage	5.8e-06	42.3
WP_014105651.1\|1914621_1914864_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014105652.1\|1915180_1916467_+\|integrase	integrase	NA	NA	NA	NA
WP_014105653.1\|1916557_1917637_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_158309230.1\|1917721_1918087_+	hypothetical protein	NA	NA	NA	NA
WP_014105654.1\|1918482_1919409_-	Bpu10I family restriction endonuclease	NA	NA	NA	NA
WP_014105655.1\|1919401_1920637_-	hypothetical protein	S4VQ82	Pandoravirus	1.0e-52	34.6
WP_148268520.1\|1921049_1921806_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_050856112.1\|1921837_1922503_+	hypothetical protein	NA	NA	NA	NA
WP_014105658.1\|1923281_1923470_+	type I restriction-modification system subunit M N-terminal domain-containing protein	NA	NA	NA	NA
WP_010511145.1\|1923492_1924524_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014105660.1\|1926267_1927458_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_014105661.1\|1927457_1928456_+	hypothetical protein	NA	NA	NA	NA
WP_014105662.1\|1928602_1931998_+	DEAD/DEAH box helicase family protein	Q6NDX2	Leptospira_phage	2.1e-15	26.1
WP_148268573.1\|1932159_1932917_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_148268663.1\|1934137_1934866_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_041247314.1\|1935099_1935972_-	arginine deiminase	NA	NA	NA	NA
WP_041247315.1\|1936377_1937358_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014105667.1\|1937423_1938986_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_014105668.1\|1939014_1939740_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-27	38.9
WP_014105669.1\|1939885_1941019_+	L,D-transpeptidase	NA	NA	NA	NA
WP_014105671.1\|1941274_1943644_-	phosphoketolase family protein	NA	NA	NA	NA
WP_014105672.1\|1943686_1944901_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_014105673.1\|1945222_1945903_-	hypothetical protein	NA	NA	NA	NA
WP_014105674.1\|1946223_1947537_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014105675.1\|1947544_1948429_-	presqualene diphosphate synthase HpnD	NA	NA	NA	NA
WP_014105676.1\|1948514_1949378_-	squalene synthase HpnC	NA	NA	NA	NA
WP_014105677.1\|1949374_1950607_-	glycosyltransferase	NA	NA	NA	NA
WP_014105678.1\|1950617_1951613_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_014105679.1\|1951805_1952888_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_014105680.1\|1952933_1953836_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_193360640.1\|1953904_1954084_+\|transposase	transposase	NA	NA	NA	NA
1955195:1955212	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2033939 : 2135074

uncultured_Mediterranean_phage(10.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014105758.1\|2033939_2034644_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_014105759.1\|2034739_2035681_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_014105760.1\|2035677_2036346_-	DedA family protein	NA	NA	NA	NA
WP_014105761.1\|2036442_2038434_+	S9 family peptidase	NA	NA	NA	NA
WP_014105762.1\|2038546_2039980_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A1B1IUK5	uncultured_Mediterranean_phage	1.3e-38	31.6
WP_148268577.1\|2039998_2040220_+	hypothetical protein	NA	NA	NA	NA
WP_014105763.1\|2040230_2041706_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_014105764.1\|2041762_2043202_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	4.3e-95	43.0
WP_014105765.1\|2043229_2044288_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_014105766.1\|2044410_2044896_+	flavin reductase	NA	NA	NA	NA
WP_193360683.1\|2045294_2045786_+	transcriptional repressor	NA	NA	NA	NA
WP_041247326.1\|2045869_2046391_+	hypothetical protein	NA	NA	NA	NA
WP_193360684.1\|2046480_2047854_+	sugar porter family MFS transporter	O13311	Aichi_virus	5.6e-28	29.4
WP_014105770.1\|2047953_2049276_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_014105771.1\|2049298_2050168_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_014105772.1\|2050370_2051207_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_014105773.1\|2051203_2052433_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_041247327.1\|2052629_2053601_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_041247328.1\|2053758_2055066_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_148268578.1\|2055831_2056998_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_193360685.1\|2057500_2058673_+	polysaccharide export protein	NA	NA	NA	NA
WP_014105778.1\|2059317_2060844_+	hypothetical protein	M4QMJ4	Micromonas_pusilla_virus	7.7e-26	30.0
WP_014105779.1\|2060887_2062513_+	hypothetical protein	V5L4U5	Insectomime_virus	6.5e-15	28.3
WP_007397838.1\|2063481_2065092_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_010510701.1\|2065155_2065503_-	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	1.6e-11	46.8
WP_007400224.1\|2065499_2065859_-\|transposase	transposase	NA	NA	NA	NA
WP_014104109.1\|2066274_2067498_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	43.8
WP_148268665.1\|2067853_2069188_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_148268579.1\|2070434_2072384_-	dextranase	NA	NA	NA	NA
WP_014104109.1\|2074057_2075281_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-40	43.8
WP_014105788.1\|2075936_2076536_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	1.5e-30	48.5
WP_012812328.1\|2077702_2078953_+\|transposase	IS701-like element IS1452 family transposase	NA	NA	NA	NA
WP_014105792.1\|2079065_2080112_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012812328.1\|2080654_2081905_-\|transposase	IS701-like element IS1452 family transposase	NA	NA	NA	NA
WP_014104060.1\|2082710_2083790_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014105797.1\|2084157_2085300_+	hypothetical protein	M4QMJ4	Micromonas_pusilla_virus	2.3e-19	29.3
WP_148268580.1\|2085554_2086306_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.4e-26	45.6
WP_014105800.1\|2087137_2088172_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-47	34.3
WP_148268666.1\|2091473_2091560_+\|transposase	transposase	NA	NA	NA	NA
WP_158309231.1\|2091576_2091750_+\|transposase	transposase	NA	NA	NA	NA
WP_014105807.1\|2091888_2093040_+	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_014105808.1\|2093034_2093682_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-10	27.5
WP_014105809.1\|2093697_2094885_-	capsule polysaccharide transporter	NA	NA	NA	NA
WP_148268581.1\|2094973_2096263_-	polysaccharide export protein	NA	NA	NA	NA
WP_014105811.1\|2096534_2096675_+	hypothetical protein	NA	NA	NA	NA
WP_014105814.1\|2098026_2098839_-	ABC transporter permease	NA	NA	NA	NA
WP_014105815.1\|2099237_2100548_+	transcription termination factor Rho	NA	NA	NA	NA
WP_014105816.1\|2100711_2101683_-	quinone oxidoreductase	NA	NA	NA	NA
WP_041247336.1\|2101706_2102162_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_041247337.1\|2102175_2103570_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_014105819.1\|2103582_2105454_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_041247788.1\|2105468_2106077_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_014105821.1\|2106069_2106891_+	ParA family protein	Q8JL10	Natrialba_phage	4.0e-21	30.8
WP_014105822.1\|2106893_2107793_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	2.6e-13	33.2
WP_014105823.1\|2108122_2108863_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_014105824.1\|2108859_2109639_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_014105825.1\|2109638_2110217_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_041247338.1\|2110381_2113210_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	5.5e-78	42.6
WP_014105827.1\|2113206_2113962_+	RNA pseudouridine synthase	NA	NA	NA	NA
WP_014105828.1\|2113943_2116049_+	hypothetical protein	NA	NA	NA	NA
WP_014105829.1\|2116085_2117060_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_193360641.1\|2117063_2117201_-	hypothetical protein	NA	NA	NA	NA
WP_041247339.1\|2117461_2117896_+	nucleoside deaminase	S4VYT2	Pandoravirus	9.2e-09	46.7
WP_014105832.1\|2118017_2119601_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.1e-22	29.5
WP_193360642.1\|2119903_2120821_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.2e-27	35.8
WP_014105834.1\|2120849_2121587_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_014105835.1\|2121631_2122207_-	NUDIX hydrolase	NA	NA	NA	NA
WP_014105836.1\|2122411_2123614_+	MFS transporter	NA	NA	NA	NA
WP_014105837.1\|2123659_2124244_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_014105838.1\|2124564_2125359_+	polyprenol monophosphomannose synthase	NA	NA	NA	NA
WP_148268582.1\|2125683_2127192_+	mannosyltransferase	NA	NA	NA	NA
WP_014105840.1\|2127307_2128975_+	hypothetical protein	NA	NA	NA	NA
WP_041247340.1\|2129084_2130188_+	hypothetical protein	NA	NA	NA	NA
WP_041247341.1\|2133613_2135074_+\|protease	metalloprotease TldD	NA	NA	NA	NA

DBSCAN-SWA_7

2361425 : 2391418

Pseudomonas_phage(23.08%)

integrase,capsid,head,portal,terminase,tail,plate,protease

attL 2387148:2387161|attR 2392284:2392297

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014105516.1\|2361425_2362541_-\|plate	baseplate J/gp47 family protein	C9DGQ6	Escherichia_phage	3.9e-27	30.4
WP_014105515.1\|2362512_2362992_-	phage GP46 family protein	NA	NA	NA	NA
WP_014105514.1\|2362988_2363465_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_014105513.1\|2363464_2364613_-\|tail	tail protein	NA	NA	NA	NA
WP_014106052.1\|2364609_2365914_-	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	1.5e-17	25.9
WP_014105511.1\|2365914_2368140_-	lytic transglycosylase domain-containing protein	A0A1P8VV74	Rathayibacter_phage	4.1e-12	27.9
WP_014105510.1\|2368257_2368569_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014105509.1\|2368565_2368943_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_014105508.1\|2368952_2370428_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	4.0e-64	36.2
WP_014105507.1\|2370424_2370676_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_014105506.1\|2370675_2371239_-	hypothetical protein	Q8W624	Enterobacteria_phage	2.4e-17	34.1
WP_014105505.1\|2371235_2371775_-	hypothetical protein	NA	NA	NA	NA
WP_014105504.1\|2371761_2372163_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_014105503.1\|2372155_2372800_-\|head,tail	phage head-tail connector protein	H9YSG3	environmental_Halophage	5.5e-10	31.4
WP_014106053.1\|2372799_2373102_-	hypothetical protein	NA	NA	NA	NA
WP_014106054.1\|2373143_2374682_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	1.6e-55	41.6
WP_014106055.1\|2374723_2375422_-\|head,protease	HK97 family phage prohead protease	A0A218MM23	uncultured_virus	6.4e-12	34.2
WP_014106056.1\|2375424_2376744_-\|portal	phage portal protein	Q8W629	Enterobacteria_phage	5.6e-57	35.3
WP_014106057.1\|2376750_2378388_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	7.3e-99	39.6
WP_014106058.1\|2378387_2378957_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_014106059.1\|2378977_2379616_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014106060.1\|2379615_2379918_-	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	1.2e-18	54.4
WP_014106061.1\|2380197_2382048_-	hypothetical protein	NA	NA	NA	NA
WP_041247729.1\|2382034_2383021_-	toprim domain-containing protein	A0A0U4B0G9	Pseudomonas_phage	1.6e-16	40.5
WP_014105492.1\|2383062_2383275_-	hypothetical protein	NA	NA	NA	NA
WP_014106062.1\|2383271_2383625_-	hypothetical protein	NA	NA	NA	NA
WP_081477896.1\|2384152_2384347_-	hypothetical protein	NA	NA	NA	NA
WP_050856121.1\|2384925_2385378_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148268587.1\|2385457_2386108_+	hypothetical protein	NA	NA	NA	NA
WP_148268588.1\|2386203_2386458_+	hypothetical protein	NA	NA	NA	NA
WP_014106067.1\|2386484_2386721_-	hypothetical protein	NA	NA	NA	NA
WP_041247372.1\|2386892_2387141_+	hypothetical protein	NA	NA	NA	NA
2387148:2387161	attL	NA	NA	NA	NA
WP_014105488.1\|2387339_2387603_+	hypothetical protein	NA	NA	NA	NA
WP_014105487.1\|2387589_2387835_+	hypothetical protein	NA	NA	NA	NA
WP_148268668.1\|2387834_2389472_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	3.5e-08	27.8
WP_014106071.1\|2389471_2389684_+	hypothetical protein	NA	NA	NA	NA
WP_014106072.1\|2389680_2389821_+	hypothetical protein	NA	NA	NA	NA
WP_148268669.1\|2390002_2390248_+	hypothetical protein	NA	NA	NA	NA
WP_148268589.1\|2390240_2390585_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148268590.1\|2390641_2391418_+\|integrase	site-specific integrase	NA	NA	NA	NA
2392284:2392297	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_016037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_016027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection