CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014963	Terriglobus saanensis SP1PR4, complete sequence	1 crisprs	csa3,cas3,RT,PD-DExK,DinG,WYL	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014963_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014963_1

2996243-2996340

Orphan

Consensus_repeat	Method
AAAAATTCCCTGAATGACTTCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014963_1

>merge|NC_014963|1|2996243-2996340|CRISPRCasFinder
AAAAATTCCCTGAATGACTTCATTAATATGTGCTCCTTGAAAAATATGTCGCTGAAGATGACCCGATAGGCGTCTAAAAATTCCCTGAATAACTTCAT

>NC_014963|1|1|2996243-2996340|CRISPRCasFinder
AAAAATTCCCTGAATGACTTCAT	TAATATGTGCTCCTTGAAAAATATGTCGCTGAAGATGACCCGATAGGCGTCT
AAAAATTCCCTGAATAACTTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014963.1\|WP_013568968.1\|2987320_2989363_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_014963.1\|WP_013568975.1\|3000219_3000990_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379574
NC_014963.1\|WP_013568965.1\|2984226_2986224_+\|excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|237784
NC_014963.1\|WP_013568974.1\|2996676_3000165_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379297
NC_014963.1\|WP_041586714.1\|2989374_2990265_-\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|225203
NC_014963.1\|WP_013568980.1\|3006515_3008357_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_014963.1\|WP_013568972.1\|2993919_2995557_-\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NC_014963.1\|WP_144312662.1\|2986231_2986633_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NC_014963.1\|WP_013568963.1\|2982515_2983067_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380345
NC_014963.1\|WP_013568983.1\|3009662_3010433_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_014963.1\|WP_013568981.1\|3008458_3009109_-\|hypothetical-protein	unknown	unknown	unknown
NC_014963.1\|WP_144312418.1\|2990382_2992794_+\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NC_014963.1\|WP_144312663.1\|3002654_3004052_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|273332
NC_014963.1\|WP_013568971.1\|2992997_2993915_+\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|379138
NC_014963.1\|WP_013568978.1\|3004173_3005628_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_014963.1\|WP_013568964.1\|2983259_2984009_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_014963.1\|WP_013568976.1\|3001183_3002611_+\|DUF3863-domain-containing-protein	unknown	unknown	gnl\|CDD\|372415
NC_014963.1\|WP_013568982.1\|3009105_3009612_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NC_014963.1\|WP_013568979.1\|3005716_3006511_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
NC_014963.1\|WP_013568967.1\|2986656_2987106_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014963.1\|WP_013568968.1\|2987320_2989363_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.79405e-34
NC_014963.1\|WP_013568975.1\|3000219_3000990_-\|hypothetical-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	0.00903792
NC_014963.1\|WP_013568965.1\|2984226_2986224_+\|excinuclease-ABC-subunit-C	gnl\|CDD\|237784	PRK14669, uvrC, excinuclease ABC subunit C; Provisional.	0
NC_014963.1\|WP_013568974.1\|2996676_3000165_+\|TonB-dependent-receptor	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	7.82945e-20
NC_014963.1\|WP_041586714.1\|2989374_2990265_-\|neutral-zinc-metallopeptidase	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	3.63728e-101
NC_014963.1\|WP_013568980.1\|3006515_3008357_-\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	5.37591e-11
NC_014963.1\|WP_013568972.1\|2993919_2995557_-\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	3.45573e-115
NC_014963.1\|WP_144312662.1\|2986231_2986633_-\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.47274e-09
NC_014963.1\|WP_013568963.1\|2982515_2983067_-\|cupin-domain-containing-protein	gnl\|CDD\|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	1.94415e-27
NC_014963.1\|WP_013568983.1\|3009662_3010433_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	6.73893e-158
NC_014963.1\|WP_144312418.1\|2990382_2992794_+\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NC_014963.1\|WP_144312663.1\|3002654_3004052_+\|amino-acid-permease	gnl\|CDD\|273332	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.59065e-52
NC_014963.1\|WP_013568971.1\|2992997_2993915_+\|class-A-beta-lactamase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.79125e-35
NC_014963.1\|WP_013568978.1\|3004173_3005628_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_014963.1\|WP_013568964.1\|2983259_2984009_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	4.30642e-32
NC_014963.1\|WP_013568976.1\|3001183_3002611_+\|DUF3863-domain-containing-protein	gnl\|CDD\|372415	pfam12979, DUF3863, Domain of Unknown Function with PDB structure (DUF3863). Domain based on 1-364 domain of Structure 3LM3 which is encoded by the BDI_3119 gene from Parabacteroides distasonis atcc 8503.	0
NC_014963.1\|WP_013568982.1\|3009105_3009612_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.47849e-76
NC_014963.1\|WP_013568979.1\|3005716_3006511_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	4.04888e-102

>NC_014963.1|WP_013568972.1|2993919_2995557_-|DUF2235-domain-containing-protein
MADDSQSLQGKTPEQASTAEPETKNNLLLSPIAYKPKNIFVCCDGTGNEFAAKDSLDGNSNVVKLYTALKLDEHQVAYYHPGVGTLGDPTKEGIARKWSVVKGLAFGQGFQENVLDAYRYLMQHYASGDKVYLFGFSRGAYTARALAGLLHGYGLLCRGNEGHIPYAWRMYTERIVTERELNAHTVTTDTSFRDTFSHRDFSIHFVGLWDTVSSVGWISTPLRLLDMAQNPSIQRGRHAVSIDERRCFYQDNLWGGPVKVDLPSVPGNPAAEPMLKCQDLLQVWFAGVHSDVGGSYPQLQSGLANIALEWMIGEARKAQAVFEETRVRMVLGSPAPGEPTPETAALAPMYEKPKSYSPHRSLQGIWWLLEFFPHRYYDKDDATAKMRIPLGAYRKIPRNSLIHPSVRERFKHPCYQPKNITADELVDPSEVIGTYKNSDAYLTFQPKICRDRKLRQNRLVVFLVTVLELGLPLYAALWFAVLACRRVHPPQILTFVRNGWLAFEGSAMGQWISKLRPVAGFFWVMVVVTLVVLVQKLISFARRSG
>NC_014963.1|WP_013568971.1|2992997_2993915_+|class-A-beta-lactamase
MRAHLLLSLTFASTLLAQPSLQSRIATIAATIPAKVSVACSLPNTPLNCDLNPDANPPMQSVFKFPLAVAVLHRADEGKLFPNQRAGQSLDEILDTPVRYLSVDIISPPNYSPLQDKYPRGNVDVPLRELITLSVSKSDNTASDILLRILGGPPVLDAYIHTLGVTGFQVRDNEKSLHATNALQYRNTFSPRAATQLLRLMADRSPLSPASTRFLNDIMLHATSGPHRIHGDLPEGTSVAHKTGTSGTANGMDAATNDIGLITLPNGQRLAIAIFVTDAHATPEAIEHVMAQIARAAYDEAIAIK
>NC_014963.1|WP_144312418.1|2990382_2992794_+|glycoside-hydrolase-family-92-protein
MNLQGRSTVSKLLVLSALTLPSVLPSQDRAALVNPLIGTTNGGNVFPGATMPFGMLQFTPEASPVNMRRMIAAPGGYEYRATKIRGFALTNVEGWGCAGGSGDVPFMPITEPVATSPSKDFRNAYSATFQHSDEKAEPGSYRVKLGNGVEVSLAAATRMGAATFRFPEGQPARVLVRTSDSESGSTDAQTSIDAKTGTVTGSVTSGNFCGYLGTEDRRSYYTLYFVARFDRPVTETGTWKDYRLTPGATTSEGGNGYGPKGFPEMGHGSGAWLGFGTGGDLRLRVAISYVSLANARANLDAESATATTYEQVAANARSTWNKRLGQIEINGGTEEQRIVFHTALYHALQTPTTYSDVNGEYTGMDRKTHHIVPGQAAQYANFSGWDIYRSQFQLLTWLDPKQGSDIAQSLYNQSLQDGGRWDRWTHLSGATHVMNGDPAAPAIADVWAFGGRSFNAKAALASLVHAADVPTKEDLSHDGCPVECVGQRPGLDQWLKLHYIPVGAPAWGPAADTLEDVTAEFGISALAGHLGDEPTRRRFAERAQYWKNLWNPNATPNEGYIMNRNADGTWAKVEGENGGPLKNFTPDTEDGFVEGSAAQYVWMVPFNVAGLFEQMGGRDKAVARLDRFFYDEKDAPAVTKSGPLHAELNNEPSIETPWLYDFAAQPWKTQQLVRQVLNTIWKNAPDGIPGNDDLGEMSSWAVFASMGLYPEIPGRAEFVLASPLFPKITVHRPAGDIQIEASSASTNAPYIQGLKLNGKPATKTWLPESFALKGGHLDFDLSDTPNKNWGIHPGDEPPSFGPK
>NC_014963.1|WP_041586714.1|2989374_2990265_-|neutral-zinc-metallopeptidase
MEWTPGGMSDDVEDRRGDSGGGGGFGIGGGGGLGIVGVGVLLLVSLVTGRNYIGQYLGMSGGGQQQQSQRVDNGQPVQESAAEHRQAQLVSFVLDDVQKMWTTVMPEQTGKNYRHAHLVLYRDELQGGCGDAQSSTGPFYCPQDEKVYIDLSFWDELKRIGGDAGDFAQGYVVAHELGHHVQKILGTEGKVTQAMQSNPGQRNALSVKLELQADCYAGIWGHSMKERGKLDEADVDDALKAAAAVGDDHLQKMSGRSVSPESFTHGTSAQRIAWFKRGMESGQVSSCKTFAGSSDE
>NC_014963.1|WP_013568968.1|2987320_2989363_-|TonB-dependent-receptor
MQISFKAFVVVVGAALGLPVLVLGQQPSNGQAKPVVAPVKEQVTVTAFRTPLGLDASASSVRLLNGVSLEEAPGFTLDDRLRQVPGVELFRRTSGWVANPTTQGISLRGLGSTAASRTLVLSDEVPLSDPFGGWVHWNEIPVLAIESVEVVRGGASDLYGSSAIGGVINAVPVRSWQTRRAAQGMYGAMNTVAGDGIFSAARDRWGALAAGSIFRTDGYILTAPEARGLVDIASGVDSESGRVEVRRGDAERGYFLRGNVLNETRSNGTPITTNATRLWRYQGGWDQPVHVGRVFVRGYGSDQGYRQSFSTIATGRVSESLNRLQRVPSQELGASGQWASTIRDFTFVVGADARDVRATDVEAPITAGVAGAVTRFSARQRAAGGYGEALWSHGGWSAALSGRVDDFRTFDALKFVGTTKTVLAAPDEVVFDPRLGVVRRVGRGFALTGTVFRAFRGPTMNELYRTGQVGQQTTLANDALKSERATGFEFGAEQNTRWGTLRGSYFWTSVNRPITALLLSQTGTAQTLQRANLGQIQSRGVSLDFVAHPVGWMQLSGGYQYALATVTRFDPDKTLVGKWIPEVARNAGTVQMRLSQRKVGVLNVIARESGMLFDDSSNINVLHGFFRMDVNAERSLGSRFDVVVTVQNLLDRRIDAGRTPTLTLATPQVATIGLRWHGAR
>NC_014963.1|WP_013568967.1|2986656_2987106_-|hypothetical-protein
MLSQIDTDYIRNFVEEAYVRPWARRRQGELVIPVRDVFDEMVRRGLPRGRVPMVCSALRGLKLLTKNHIEIKSIEGPPSQQSTTVVFHYVDKAEPGSSKKQVPAPVESSDEWAQRLTGRLKGLLRNEIQGMGGTEAFMRWVRSDDEEAA
>NC_014963.1|WP_144312662.1|2986231_2986633_-|PIN-domain-containing-protein
MLFIYLLEGNEKYSKRCWQLLAQARERGDQLYTSHLAMGELLSGGDRAGDAHAKSEIRSVLNDAGFSYLPFGEDAVDTFAQLRAVQKLRIADSIHLACAGAAGIDLFLTGDRQLLKVYVPGINFIADFDTPLF
>NC_014963.1|WP_013568965.1|2984226_2986224_+|excinuclease-ABC-subunit-C
MDINEKIRTLPTQPGVYLYKNAEDEVIYVGKAKNLRSRVRSYFLEANQLANRKTGSLMREAVDLEYILVANEREALALENNLIKQRKPRFNILLRDDKTYPYVKLTVRDRHPKVFVTRKLKKDGALYFGPYFPGNLAYRLVDLIHRSFLIPSCKVDLSRYHPRPCLEYYIKRCLAPCVENLVTPDTYRDAIRDVQLFLEGKESELEDRITARMHEAAASEQYELAARLRDQIVTVHQLQEKQRIASTDDSDADVFGFHFANDMLAVNQFHMRSGKIVDRRDFFFEDLPEILEDDEPETTETIDSLSLSSSSTPLSSRSEAEGSAFLPDQAEDTQTFNPSNFFAAFLKQLYLDQPYVPRTIMVPAEFRDRDLLATLLCDRTGHKVEILAPQRGEKRSLVDLVCQNAKQSYDQRFRTLQPSKAAIAASLQDALGLADPPKRIECFDISHIQGAETVASMVVWEDGEMKKSDYRKFKVNSVSGVDDFASMHEILTRRYSKLQAEKKPFPSLILIDGGLGQLHAAYAALEQLGITLQPLASIAKREEIIYVHGQEEDPVVLDRRSPVLHLVQHIRDESHRFAVTYHRKRREIRDRETELLPIPGVGPRTRQRLIEHFGSIRGIKLAGPDALTAVVNAATAEKIRAYLNAERDAAIDGNPEPSNPLRILS
>NC_014963.1|WP_013568964.1|2983259_2984009_-|OmpA-family-protein
MKNRTEVLKKTLNGVGVAALSLGIVALTVGCSTKNYVRSQTAPIVAQTNQLEKRTGDDQRNIQDTDARAQQGIAGAKSAAATADQHAMAAGQSADAANVNAKDAYNRVDSLAGTVAGLDKYKPLSDVSVTFRFDKAVLTAADKKELDAVASSLQTTRHYLLEVTGGTDAVGDAAYNYALSQRRADAVVTYLAAKYNIPPHKFYMVGIGKDQEVATNKTAAGRAKNRRVQVRVLSNMEEEGAPERGANGN
>NC_014963.1|WP_013568963.1|2982515_2983067_-|cupin-domain-containing-protein
MSENSSDLKAFKRAPSVENSKWYKGILITQLASEKETGGDYDLTVTYARRGTEPPPHVHSRENEFFYVLEGELTAYVGKEIFQVEAGAGLFMPRGVPHAVRSKSPETRLLVLITPGGFMHAINEMAAPAEKLEIPADDAVTYASGNLENTMKIFEKYGIHLLMPEEIAQEMPAYPMPRVSGSN
>NC_014963.1|WP_013568974.1|2996676_3000165_+|TonB-dependent-receptor
MTSTFFKDRRKAFAYFIVLILLGLAPNAFSQMDQGSIVGSVLDATGAAVPNAKVKLVNEQTGFTLERTADASGTYTFTPIKIGTYTVTASADTFRSFEQRGINVTAGSRNEVPLTLAVASTDQTVEVSSAPPLLQTQEASTGATISAEAIVQTPLLNRNPIFVAQLTPGVVPAEQGSRGANKGDFSANGQRSQQNNYILDGVDNNAVLVDIPNGASYVIKPVPDALAEFKVQTSNYNAEIGRAAGAVVNMSIKSGTNGLHGSLWEYWRNDILNARDFFQTVKPKYRQNQFGGTIGGPILKDKLFFFGDVEANRIIFGQTSINSIPTLKMRTGDFSELLSPTLTNNTVRTLSVPGSVGLVPQQCNGALNVFCPAQISPTAQKVLNALPAPNLGVTGQTFNNYLFQGSASDNTTQFDGRIDWNVSSKDQVFARYSVSNQAQNFPSIFGVLDGGGFGADGNIGNKGRNFTASETHFFSPTLSNELRFGYNWINAKYSQANSGDNLSPQLGLGGIPFSAGNGGTPHFNLNDGLTSFGSPEYVPTDEYENVAQILDNVSKVIHHHSLKGGVNFQRIRVQTLQPTTARGTYNFTGKFTQTPGEAGTTGFGAADMIADQMDNASISNISTVHNQRWYRSAYFQDDWKAASKLTLNLGIRWEYFQPQVELDGRQANFQIDYSNNTAQFLLPEKARQYTLPTALLTELAANNVPVIYTSNNSLASAQKLNFSPRFGFSYAATPTTVVRGGFGIFFGGIESVGFFPNLGANPPFLFTSNITSGGCSTDPTVGCATNGVTLENGFTTAIAQGLSNFVNTPDMRSYPKNIQTPYTESFNLSVQQQLTADTTLTLSYVGAVGRHLTSNPKANQIPTLLAPGADVQKARPFNQFGAGSLESYSAVSNYNGAQATVEHRAAKGLYFLATYTWSKNLEDAFLPLGANGQSGSGYRNWRQLGFGFDYGPSYADTRHRAVVNLQYDLPFGMGRKYLNKSHFADAVIGGWALTTLFRVQTGQPQIVQPSNDPTNGAGQAQGIRVGDPNSNNLPSPGNGAVCASQTRTVNTWFNPCAFINPTSATGPNDIAAYGGYGRSVVYGPGYNRVDLSLLKKFTIYREMALDLRADLFNALNTPAYGQPNATIGSSFGQITSTRFGGTGTAAETPDARVAQISARFHF
>NC_014963.1|WP_013568975.1|3000219_3000990_-|hypothetical-protein
MATDAVFAPAPRQQPHYRPVNRTVERVFYSGMSILLCVCVFIGFSPTYFQAGMMRAPLPSPILHIHGAVFTLWMLLFVVQAALISARRVKWHRSLGTIAFCLPPLMIVLGVLAAIDALHRGVKIGPLDPFVSSAIPLVGIAGFTVVIYASWRARRRPDAHKRLILIATIGLCGAAFGRFPWGRIGLPPAAGAVTGIGVLLLLLLVYELISVRRIHRSTMWAVPLIFASVALAVPIGMTPPWHAFSAFLSRTIGPHL
>NC_014963.1|WP_013568976.1|3001183_3002611_+|DUF3863-domain-containing-protein
MPTINRRRLLSGSAATGASIMAASSGLSAVSKLLTPPRQELKLKGNRFVTFCIMIRTTPWEVSRDVKLMARDESTWHTLDGVRSMREAFARSNPNGRLTWGFTLNALEDKRTNFRQIRDYAVECHQKFGDEVSYFPGYFPAMYLPRERVNREMTEAIQIISEFVGQGYRPQAIMGGFLSANNLAYLAEKENIHTAHAVIWSQHAIDGGGADGSPSYPFYPSAEHFCKPAQGTSDFIDCVNLDGWTMDFLCARRSGALDHKITGYNSRRGVGPIETYVGWGLDLGHREVMHTQSIHFDEGFMRNQWGWVTNIWEAQMVHEFGKDLICSALERWVTDTKKRWPDVHFVSFGEFGSIWRGQHKTNEDWNYSFIERGSGLGDSYNNLEIEWFMNKNLRLALLRDWHQETPKKVIDFTRYDLPAHEPADPSPTHPAKSWDLMNRINQKGLRRQDTPVLLSELSQADSDFIFASLPQLKTY
>NC_014963.1|WP_144312663.1|3002654_3004052_+|amino-acid-permease
MPKLTSTIPPLHSPDIPGELPRVLNAWHATAIVVGIIIGSGIFLVPREMMAAVGSSTMVYAVWILGGLLSLFGAMTYAEIAAARPHYGGEYAFLREAYGDLTGFLYMWTNFIVSKPASLASIVAGLTRTLATFAIFGFFNNPAFLHLTWGTVVAIGATWAVTVLDIVGTRKAGDVQVALTWLKILLIVIITGVCFVAAGPLGHWHNFSTLYTGATGGFSGFMIALIAALWAYDGWSDVVAVAGEVRNPQRNLPLALVGGVALVGALYMLTNAAIQYILPAASLAAADRPAADALRLIVGPWGAGLVSIGMAVSITATLVGSSLSGARVPFAAARNGLFFPSIARVNPRFQTPANALVLQAVLATLILFMIGKFQALFSLAIFSEWVFYGLAASTIFVFRKRDTAPRPYSVTGYPVVPVLFILSALVLVVFSFRAEPRNSFYGTLAILAGVPVFLWFKRTASKGEI
>NC_014963.1|WP_013568978.1|3004173_3005628_-|glycogen-synthase-GlgA
MHVVFAASECVPFAKTGGLADVVGALPAELKKLGHRVTTFIPYYRQVARAMPNLPAKIESLTIPFPTYNRFARILDAGEQNGAQVYFVDIPELFDRESLYATPSGDYPDNAERFGCFSRAVIEATKILGVPDIFHVHDWQTAMVSVLLRSVYYFDPVLRKVPSVLTIHNAGYQGWFPPRTIETLLLPWDMFTFTKLEQNDTLNFLKGGAVYSDALTTVSQTYAKEIQTSEFGSGLEDTFRQRGGDLFGILNGVDYGEWNPATDRNIAAHYTPEDLSGKKACRRDLLHAFGLDHIGDETPVLGIVSRLATQKGLDFVAQIADELVKEDIALVVLGNGEEYYERLFTELAERYPDKVRVQIKYDNVVAHKIEAGADIFLMPSRYEPCGLNQIYSLKYGTVPVVRATGGLEDTIDEQHDGGGNGFKFWGYNAWDFFDAIKRALATFRNKEQWEGMMRRGMAENHDWEISTKAYVEVYERVIERRAWS
>NC_014963.1|WP_013568979.1|3005716_3006511_+|ribosomal-RNA-small-subunit-methyltransferase-A
MAQPRKPKLGQNFLVDDGARHRIADALGDVSQRTVLEIGPGHGSITSILAERAKKLICIELDRSLAPELRFKFRNHPNVEIIEADVLHADFAALLGEDETADLVGNLPYYITSDILLHLYAQSERLRMAVVMMQREVADRISASPGTRDFGLLSATSQMYADVENLFTLPPEAFSPPPDVHSSVLRLTFAPRFAELHVEAKPFDAFLKMCFQQKRKTLSNNLRAGGVSPERIAAACAQTDVSPTVRAEAMTLEALASMHRELRM
>NC_014963.1|WP_013568980.1|3006515_3008357_-|FecR-domain-containing-protein
MRSVRNLWLLPLTLALALPLFSQDDQGQNTPPVRTARISFLSGSVTVDGNGQSFAVQLNMPAVAGQRIATGDDGQTEIEFEDGSVVRLTPNSSISLNALDLDNSNHMSTQIQPLTGLLYFETRASGTSTYFVDAAGEQIAPQENSVFRIGMDALPAEISVLQGSVSVSRQGGFSAVLKSGETLRGDESDNTRYFLSQGVSEQTWDKWNEDRDQEALNEANQRTEARDTLEGTQGYGWSDLDAYGNWYNLPGEGLVWQPTGADASGFDPYGNGSWVYYPSGYVWASSYAWGWTPFRCGNWNYWNGFGWGWQATGCNTFGAGWGYSGYGNAGLRIRRSPPGYRLPIRPVTGPRPRPGEQFHLRPIVPVRNSFASNSVRVQDSGRTAIFNGHPVTPLRRLGGYTQRGGSAVGAGLRRDFPVDPATQRPSMGIPPTQPNAVIVPGAGWTSVGGRSVTGAPSIPGAAVHPANGVPQPASGTSRPNWNGTGTGVRGHQPNPTAPATDIAPTTRPNWNGLQNHHQQAPGSQETPVPQQVRNPTGQSHPPAANAAPTFQPQPAAPVRSAPVVPTQTRPAFQPTPTQQPRPAPVQQPQFHTPPAPRPASPPPAPRAAPVAPK
>NC_014963.1|WP_013568981.1|3008458_3009109_-|hypothetical-protein
MKRLALLYLYLLAVPVVSQSAPSVPPASSGFKWSMEFERPGLTLPWWKIAREADGSTVFTARREDALPPPSSTFIMSAATSVKLEALLRSSHGMQPCETKAKNLANMGMKTVIFTTDGTSATCAFNYSDNKPLLQVADIGQAIALTLESGAELARLHRYDRLGLDKEMINLSKAAAEGNALELQSIAETLRSIAADTHVLDRVRVKAVHLLELASN
>NC_014963.1|WP_013568982.1|3009105_3009612_-|crossover-junction-endodeoxyribonuclease-RuvC
MRVFGIDCGTEYTGWGVVEVDDSGKRQRLVPIAAGAIKLHKKHKTPERLQQVYVELTGLITAYEPEVVAIEDVFFAANAKSALKLGHVRGVAMLAAASCGLQVAEYAPLSIKSAVVGYGLAAKEQVQFMVARLLDLEKAPEPADAADALAIAICHIHTAQTLLLQGGR
>NC_014963.1|WP_013568983.1|3009662_3010433_-|thiazole-synthase
MEPLVIAGRTFQSRLIVGTGKYKDGPETKAAIEASGAEMVTVAVRRVELDRTKDSLLDFIDPAKFFLLPNTAGCYTGEEAIRAARLGREVGLSDWVKIEVIGDQRTLYPDVAGTLTATQVLVKEGFKVLPYTTDDIVFAKKLIDAGASAVMPLGSPIGSGLGLQNMANLRILRELIDEVPLILDAGIGTASDAAIAMELGYDAVLVNSAVAAAKDPVGMAFAMKHAVIAGREAFLAGRMPRKLYATASSPLDGISR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1763290 : 1773995

Yellowstone_lake_phycodnavirus(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013568027.1\|1763290_1764379_-	CDP-glucose 4,6-dehydratase	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	1.7e-11	29.1
WP_013568028.1\|1764416_1765208_+	TIGR03435 family protein	NA	NA	NA	NA
WP_013568029.1\|1765296_1766067_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_013568030.1\|1766228_1767572_+	lipopolysaccharide biosynthesis protein RfbH	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	7.9e-43	32.3
WP_013568031.1\|1767617_1768415_+	aldolase	H8ZJ32	Ostreococcus_tauri_virus	3.1e-18	30.5
WP_013568032.1\|1768414_1769128_+	SDR family oxidoreductase	E5ERI5	Ostreococcus_lucimarinus_virus	4.0e-25	33.6
WP_013568033.1\|1769111_1770188_+	3-dehydroquinate synthase	A9YVT7	Ostreococcus_tauri_virus	4.0e-29	31.8
WP_041586532.1\|1770208_1771990_+	thiamine pyrophosphate-binding protein	E5EQ70	Micromonas_sp._RCC1109_virus	2.9e-77	32.5
WP_144312605.1\|1772070_1773045_+	GDP-mannose 4,6-dehydratase	NA	NA	NA	NA
WP_013568036.1\|1773059_1773995_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	3.1e-38	34.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage