CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021591	Serratia plymuthica 4Rx13, complete genome	0 crisprs	DEDDh,RT,DinG,csa3,cas3,WYL	0	0	2	0
NC_021594	Serratia plymuthica 4Rx13 plasmid p75, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3780210 : 3789977

Planktothrix_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004947683.1\|3780210_3781938_+	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	2.1e-19	26.8
WP_004947686.1\|3781987_3782497_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_004947689.1\|3782591_3783908_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.1e-19	26.0
WP_004947692.1\|3783913_3784594_-	response regulator transcription factor	NA	NA	NA	NA
WP_004947695.1\|3784769_3785966_+	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	4.4e-37	74.6
WP_110605869.1\|3785984_3787919_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	2.0e-39	42.0
WP_004947698.1\|3787922_3788804_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	2.5e-53	40.1
WP_004947703.1\|3788888_3789977_-	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	G9BWD6	Planktothrix_phage	9.3e-34	40.7

DBSCAN-SWA_2

4003766 : 4118363

107

Enterobacteria_phage(20.0%)

protease,capsid,integrase,portal,head,terminase,tRNA,tail

attL 4060600:4060624|attR 4104861:4104885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004952075.1\|4003766_4004963_-\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_004952077.1\|4005242_4005668_-	nucleoside-diphosphate kinase	A0A0M5KH58	Mollivirus	1.6e-13	38.8
WP_004952082.1\|4008237_4013229_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_004952083.1\|4013498_4014329_-	enhanced serine sensitivity protein SseB	NA	NA	NA	NA
WP_086012891.1\|4014418_4015699_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.5e-35	32.1
WP_004952086.1\|4016029_4016365_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_004952087.1\|4016367_4018218_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.9e-103	42.4
WP_004952088.1\|4018244_4018766_-	co-chaperone HscB	NA	NA	NA	NA
WP_004952089.1\|4018829_4019153_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-20	45.4
WP_004952090.1\|4019278_4019665_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	8.3e-54	78.9
WP_004952093.1\|4019689_4020904_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	1.2e-34	32.8
WP_004952096.1\|4020958_4021453_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_004952097.1\|4021647_4022382_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_004952100.1\|4022501_4023305_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_004952103.1\|4023373_4024396_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_004952104.1\|4024386_4025055_-	DUF1007 family protein	NA	NA	NA	NA
WP_004952106.1\|4025200_4026466_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_004952108.1\|4026462_4027614_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_004952110.1\|4027769_4029023_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	8.6e-100	53.0
WP_004952111.1\|4029397_4030588_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_004952113.1\|4030629_4031817_-	cytochrome c	NA	NA	NA	NA
WP_004952114.1\|4031813_4033724_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004952117.1\|4033810_4035235_-	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_006327351.1\|4035270_4036077_-	ABC transporter permease	NA	NA	NA	NA
WP_004952120.1\|4036066_4037011_-	ABC transporter permease	NA	NA	NA	NA
WP_004952122.1\|4037012_4038041_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.3e-24	31.0
WP_004952123.1\|4038095_4039250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004952126.1\|4039324_4040788_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_004952128.1\|4040903_4041827_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004847623.1\|4042150_4042489_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_004952129.1\|4042502_4044125_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.3e-92	35.8
WP_004952130.1\|4044254_4045592_-	two-component system response regulator GlrR	NA	NA	NA	NA
WP_004952131.1\|4045588_4046461_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_004952132.1\|4046464_4047916_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.4e-13	24.0
WP_004952133.1\|4047997_4048306_-	hypothetical protein	NA	NA	NA	NA
WP_041417109.1\|4048842_4052733_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.0e-127	58.9
WP_020439617.1\|4053011_4054472_+	membrane-bound lytic murein transglycosylase MltF	G0YQ82	Erwinia_phage	1.6e-09	37.2
WP_004952136.1\|4054472_4054979_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	6.5e-06	41.7
WP_004952139.1\|4055162_4056215_+	hypothetical protein	NA	NA	NA	NA
WP_004952141.1\|4056298_4056955_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_004952142.1\|4056958_4058326_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_004952145.1\|4058345_4059239_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_004952146.1\|4059673_4060522_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
4060600:4060624	attL	NA	NA	NA	NA
WP_041417111.1\|4060818_4061061_+	DinI family protein	K7PKR6	Enterobacteria_phage	2.2e-28	81.0
WP_041417113.1\|4061060_4061303_+	hypothetical protein	NA	NA	NA	NA
WP_020453927.1\|4061330_4062101_-	hypothetical protein	NA	NA	NA	NA
WP_004952150.1\|4064424_4067808_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	2.3e-309	52.4
WP_020453928.1\|4067926_4068496_+	hypothetical protein	NA	NA	NA	NA
WP_020453929.1\|4068499_4069108_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	9.4e-60	59.2
WP_071824740.1\|4069147_4069573_-	hypothetical protein	J9Q806	Salmonella_phage	4.4e-24	46.4
WP_041417373.1\|4069616_4070318_-	C40 family peptidase	A0A1W6JP31	Morganella_phage	4.4e-77	56.3
WP_020453931.1\|4070320_4071070_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.6e-83	57.8
WP_041417115.1\|4071078_4071414_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	7.1e-17	36.6
WP_041417117.1\|4071410_4074746_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	56.9
WP_004952156.1\|4074977_4075343_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.8e-21	43.6
WP_080653249.1\|4075352_4075616_-	immunoglobulin domain-containing protein	Q7Y402	Yersinia_phage	6.5e-18	58.1
WP_004952158.1\|4075612_4076068_-	hypothetical protein	Q7Y403	Yersinia_phage	6.1e-56	73.5
WP_004952159.1\|4076102_4076495_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	2.5e-42	67.7
WP_004952161.1\|4076491_4076881_-	hypothetical protein	Q6UAX2	Klebsiella_phage	6.9e-32	52.7
WP_041417121.1\|4076867_4077206_-\|head	phage head closure protein	Q7Y406	Yersinia_phage	2.0e-19	50.9
WP_041417123.1\|4077202_4077529_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	4.9e-31	54.6
WP_071824741.1\|4077544_4077814_+	hypothetical protein	NA	NA	NA	NA
WP_004953488.1\|4077969_4079190_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.1e-179	79.8
WP_004953490.1\|4079202_4080057_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.8e-126	79.6
WP_004953495.1\|4080069_4081374_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	7.4e-203	79.5
WP_020453933.1\|4081373_4083119_-\|terminase	terminase large subunit	M4QNU0	Tetraselmis_viridis_virus	1.0e-138	43.9
WP_004953501.1\|4083069_4083537_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	2.0e-49	62.7
WP_004953504.1\|4083716_4084046_-	HNH endonuclease	A0A2I6PIG1	Escherichia_phage	2.5e-35	63.1
WP_147150524.1\|4084163_4084688_-	hypothetical protein	NA	NA	NA	NA
WP_041417125.1\|4084835_4085033_-	hypothetical protein	NA	NA	NA	NA
WP_147150525.1\|4085053_4085266_-	hypothetical protein	NA	NA	NA	NA
WP_004953511.1\|4085262_4085793_-	hypothetical protein	K7P6W1	Enterobacteria_phage	9.1e-27	48.1
WP_004953513.1\|4085792_4086269_-	lysozyme	A0A1R3Y5W5	Salmonella_virus	1.9e-52	61.0
WP_016928147.1\|4086273_4086501_-	hypothetical protein	I6R0S9	Salmonella_phage	7.6e-07	54.0
WP_004953515.1\|4086575_4087604_-	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	3.7e-125	63.6
WP_004953525.1\|4088288_4088864_-	SocA family protein	NA	NA	NA	NA
WP_004953527.1\|4089214_4089886_-	hypothetical protein	Q8HA89	Salmonella_phage	3.7e-41	42.3
WP_004953531.1\|4089882_4090461_-	endonuclease	A0A1P8DTE0	Proteus_phage	2.2e-42	66.4
WP_004953535.1\|4090444_4091431_-	DNA primase	A0A286N2Q0	Klebsiella_phage	2.7e-109	60.7
WP_041417376.1\|4091427_4092951_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	9.8e-199	64.6
WP_004953550.1\|4093445_4093955_-	hypothetical protein	S5FXP0	Shigella_phage	4.3e-42	51.6
WP_004953553.1\|4094031_4094226_-	hypothetical protein	K7PLQ6	Enterobacteria_phage	1.4e-20	80.6
WP_041417377.1\|4094334_4095045_+	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	2.0e-85	65.4
WP_020453938.1\|4096464_4096947_-	hypothetical protein	NA	NA	NA	NA
WP_004953563.1\|4097433_4097796_+	hypothetical protein	NA	NA	NA	NA
WP_004953567.1\|4098738_4100037_+	hypothetical protein	A0A2H4J902	uncultured_Caudovirales_phage	2.1e-85	59.0
WP_041417131.1\|4100260_4100623_+	hypothetical protein	NA	NA	NA	NA
WP_020453940.1\|4100702_4101131_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_041417133.1\|4101196_4101766_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	6.9e-65	62.1
WP_071824743.1\|4101781_4101997_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004953570.1\|4102128_4103061_-	hypothetical protein	NA	NA	NA	NA
WP_004953573.1\|4103223_4104621_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004953576.1\|4104836_4105097_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	5.5e-17	51.2
4104861:4104885	attR	NA	NA	NA	NA
WP_004953578.1\|4105160_4105541_-	holo-ACP synthase	NA	NA	NA	NA
WP_004953580.1\|4105540_4106272_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_004953582.1\|4106344_4107076_-	DNA repair protein RecO	NA	NA	NA	NA
WP_004953584.1\|4107084_4107993_-	GTPase Era	NA	NA	NA	NA
WP_004953587.1\|4107989_4108670_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	3.7e-20	30.8
WP_004953588.1\|4108852_4109830_-	signal peptidase I	NA	NA	NA	NA
WP_004953591.1\|4109862_4111662_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	25.4
WP_004953595.1\|4112202_4113042_+	hypothetical protein	NA	NA	NA	NA
WP_004953599.1\|4113038_4113515_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_004953603.1\|4113511_4114471_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_004953606.1\|4114470_4115124_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_004929136.1\|4115154_4115730_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_004953609.1\|4115908_4117546_+	L-aspartate oxidase	NA	NA	NA	NA
WP_020453942.1\|4117580_4118363_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage