CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	0 crisprs	NA	1
NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	0 crisprs	NA	0
NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	0 crisprs	csa3	0
NZ_CP020896	Rhizobium phaseoli Brasil 5 strain Bra5 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

262714 : 316457

Enterobacteria_phage(33.33%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016737534.1\|262714_264307_-\|transposase	IS66-like element ISRle3 family transposase	A0A218MNE7	uncultured_virus	5.9e-53	32.9
WP_085743939.1\|264417_264726_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_158464440.1\|264817_265072_-\|transposase	transposase	NA	NA	NA	NA
WP_029532496.1\|265698_266427_-	carbonic anhydrase	NA	NA	NA	NA
WP_012489538.1\|267092_267296_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_008536871.1\|267401_268403_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.2e-41	33.8
WP_012489536.1\|272577_275667_-	hypothetical protein	NA	NA	NA	NA
WP_085743940.1\|276741_279837_-	hypothetical protein	NA	NA	NA	NA
WP_085743941.1\|280182_283458_-	hypothetical protein	NA	NA	NA	NA
WP_085743942.1\|286026_288504_-	hypothetical protein	NA	NA	NA	NA
WP_085743943.1\|289263_290550_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.5e-43	34.1
WP_009997167.1\|290549_291350_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.5e-57	44.0
WP_008536079.1\|295317_296205_+	hypothetical protein	NA	NA	NA	NA
WP_051679588.1\|298406_298586_+	hypothetical protein	NA	NA	NA	NA
WP_085743925.1\|300450_302103_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-83	43.8
WP_008536653.1\|302148_302496_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.4e-38	63.6
WP_004675073.1\|302492_302900_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_085743944.1\|304366_305377_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008536071.1\|306718_306961_-	hypothetical protein	NA	NA	NA	NA
WP_012489526.1\|307056_308673_-	hypothetical protein	NA	NA	NA	NA
WP_004678816.1\|308695_308884_-	hypothetical protein	NA	NA	NA	NA
WP_085743945.1\|308969_312575_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012489524.1\|312584_313874_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_008536064.1\|313873_315040_-	FHA domain-containing protein	NA	NA	NA	NA
WP_010069402.1\|315101_316457_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020896

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020896_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020896_1

313069-313168

Orphan

Consensus_repeat	Method
CGCTGTCAGCTTAGCTGATCACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020896_1

>merge|NZ_CP020896|1|313069-313168|CRISPRCasFinder
CGCTGTCAGCTTAGCTGATCACCTCGGCTGTCAGCTTCAGCTGATCACCCCGGCTGTCAGCTTCAGCTGATCACTCCGCTGTCAGCCTAGCTGATCACCT

>NZ_CP020896|1|1|313069-313168|CRISPRCasFinder
CGCTGTCAGCTTAGCTGATCACCT	CGGCTGTCAGCTTCAGCTGATCACCCCGGCTGTCAGCTTCAGCTGATCACTC
CGCTGTCAGCCTAGCTGATCACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020896.1\|WP_085741595.1\|310169_311444_-\|peptidase	unknown	unknown	gnl\|CDD\|226018
NZ_CP020896.1\|WP_085741590.1\|302091_303654_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP020896.1\|WP_085741601.1\|318333_319314_-\|complex-I-NDUFA9-subunit-family-protein	unknown	unknown	gnl\|CDD\|187579
NZ_CP020896.1\|WP_085741605.1\|321733_322642_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NZ_CP020896.1\|WP_085741598.1\|313901_314771_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP020896.1\|WP_012482361.1\|319425_319713_-\|DUF1330-domain-containing-protein	unknown	unknown	gnl\|CDD\|227757
NZ_CP020896.1\|WP_085741596.1\|311645_312935_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223222
NZ_CP020896.1\|WP_085741593.1\|306145_307243_-\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|226021
NZ_CP020896.1\|WP_010006079.1\|316862_317660_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP020896.1\|WP_085741602.1\|319741_320449_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP020896.1\|WP_085741591.1\|304404_304854_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|224961
NZ_CP020896.1\|WP_085741604.1\|321038_321638_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226472
NZ_CP020896.1\|WP_085741592.1\|305087_306164_+\|DUF2252-family-protein	unknown	unknown	gnl\|CDD\|313268
NZ_CP020896.1\|WP_004673906.1\|303769_304408_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180353
NZ_CP020896.1\|WP_085743552.1\|308347_309880_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_CP020896.1\|WP_085741603.1\|320455_321037_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP020896.1\|WP_085741599.1\|314770_315922_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP020896.1\|WP_085741594.1\|307247_308348_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226020
NZ_CP020896.1\|WP_085741600.1\|315934_316627_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP020896.1\|WP_010005376.1\|300831_301230_-\|glyoxalase/bleomycin-resistance-protein/dioxygenase	unknown	unknown	gnl\|CDD\|319953

Protein	Function_ID	Function_description	E-value
NZ_CP020896.1\|WP_085741595.1\|310169_311444_-\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NZ_CP020896.1\|WP_085741590.1\|302091_303654_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP020896.1\|WP_085741601.1\|318333_319314_-\|complex-I-NDUFA9-subunit-family-protein	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.28948e-112
NZ_CP020896.1\|WP_085741605.1\|321733_322642_-\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	5.48187e-82
NZ_CP020896.1\|WP_085741598.1\|313901_314771_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.6758e-72
NZ_CP020896.1\|WP_012482361.1\|319425_319713_-\|DUF1330-domain-containing-protein	gnl\|CDD\|227757	COG5470, COG5470, Uncharacterized conserved protein [Function unknown].	3.85156e-46
NZ_CP020896.1\|WP_085741596.1\|311645_312935_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	1.09312e-97
NZ_CP020896.1\|WP_085741593.1\|306145_307243_-\|DUF1513-domain-containing-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	7.16492e-180
NZ_CP020896.1\|WP_010006079.1\|316862_317660_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.72993e-89
NZ_CP020896.1\|WP_085741602.1\|319741_320449_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	2.57196e-119
NZ_CP020896.1\|WP_085741591.1\|304404_304854_-\|PaaI-family-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	2.70675e-34
NZ_CP020896.1\|WP_085741604.1\|321038_321638_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|226472	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism].	4.6504e-101
NZ_CP020896.1\|WP_085741592.1\|305087_306164_+\|DUF2252-family-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	1.39362e-24
NZ_CP020896.1\|WP_004673906.1\|303769_304408_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180353	PRK06026, PRK06026, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated.	1.51314e-146
NZ_CP020896.1\|WP_085743552.1\|308347_309880_-\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NZ_CP020896.1\|WP_085741603.1\|320455_321037_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.01984e-24
NZ_CP020896.1\|WP_085741599.1\|314770_315922_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	2.5173e-179
NZ_CP020896.1\|WP_085741594.1\|307247_308348_-\|hypothetical-protein	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	2.81422e-129
NZ_CP020896.1\|WP_085741600.1\|315934_316627_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.36968e-40
NZ_CP020896.1\|WP_010005376.1\|300831_301230_-\|glyoxalase/bleomycin-resistance-protein/dioxygenase	gnl\|CDD\|319953	cd09011, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.74657e-09

>NZ_CP020896.1|WP_085741596.1|311645_312935_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase
MRLGGRLEGAISVLADIDARKRPVADALKDWGLAHRFAGSGDRAAIGNIVYDALRMRLSHAWLMDDDSAAAIAHAVMFRQWGFTPDRLAAELADDKFAPPPLAADALAAFAGRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEAQALAARPTLDLRANILKASRDKAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLVLAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVHDDARGLSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGFVKPGGELIYVTCSVLPQENEEQVRRFTTGNPDFQIVSALPAWDALFGKDAPRPHSCDALTVTLTPASTDTDGFFFCRMQRKG
>NZ_CP020896.1|WP_085741595.1|310169_311444_-|peptidase
MKLDKFRAAVLAIAPATLLALPAQAATDAAAVVKHYADVAHAKYEDSLTTAKALDAAIDAFLKTPTDETLKAARDAWIKARVPYQQTEVYRFGNPVVDEWEGKVNAWPLDEGLIDYVDPSYGTESDENSLYVANVIANKTIKIDGKDVDASKLTPEFLSGTLAEAGGIEANVATGYHAIEFLLWGQDLNGTGPGAGNRPATDYDLKNCTHGNCDRRAEYLKSASTLLVSDLQEMTDNWKPDGAATKNVEADPKAGLVAILTGMGSLSYGELAGERMKLGLLLHDPEEEHDCFSDNTYNSHLNDAIGIAAAYTGNYTRVDGTKLSGPSLHDLVAAKDKALDAELEGKLNKTLDAMNAMAKRGETVEKYDQMIAEGNKDGNAVVQAAIDGLIDQTKSVQRVIAALDLGTVQLEGSDSLDNPNAVFK
>NZ_CP020896.1|WP_085743552.1|308347_309880_-|c-type-cytochrome
MFSKFRISLRFATYAALAGAPVAFAAGFDLPTKRTDLSEADLKRVADVTRPTRDFSKAEQYEAMQAGGATSVDPVTEDSFSHISANIPFEEEQNFKLGNALFRKLWVSSPSSTQASDGLGPLFNARSCMSCHVNDGRGKPPEGGPSAVSMFLRLSRAARTPEEEKAIASADILNFPDPVYGHQLQDLAVPGLAAEGRMTIRYDEETVTFGDGETVSLRRPHYAATNLAYGPLDASTTISARVAPAMIGLGLMEAIPEADILAHADPDDADGDGISGKAAVVRDHRSGEIALGRFGWKAQNATVRDQNADAFANDIGISTPDHPDAHGDCTETEKKCLAMPTGVQKRLGEEEAPGPILDLVTFYSENLAVPARRKASFPETLKGKRIFYETGCISCHVPKFVTRRDSPEKAQSFQLIWPYSDFLLHDMGDGLADGQQVGLASGREWRTPPLWGIGLTRTVSGHSFFLHDGRARDLNEAILWHGGEAEKARNAFSALSKDDRAALITFLESL
>NZ_CP020896.1|WP_085741594.1|307247_308348_-|hypothetical-protein
MRLWHPLLCLTLIGLATSAAAQTAAPPAGLNEDAVPAVMQRAVDEVIRPGYRNIQQSAARLTTAMKDLCDAGTQQTLDKAKSAFDDTIRYWSIIEIVQTGPVIQDNLFEHILFYPDRKGVGLKQVQALIAKADPKDATVDAIAGKSVALQGLTALEYVLYGNGSENLVGQKGGFRCLYGAAVAGNIQREAGEVVAAWEKPDGVQASWKHPGPQSNDFMDNKEAVTALLGILVHGAENVRDQRLEQFYKGKDNAPRPRMAIYWRSKNTWKSMAANLEGLRTLWQKAGMAELLPPDKRSIAASIDEDFKSLLDSVPKLNPDIDAATSDAEKAKLDTLLAESRDLITRISDDYGAAIGLSAGFSFSDGD
>NZ_CP020896.1|WP_085741593.1|306145_307243_-|DUF1513-domain-containing-protein
MMRSALINRRSFVKAAGIGFLASLAPRSLLALERADAVYASGIRTANGSFAIATVTEHGEIIDQVALPARAHGMAFSAATGKTVAFARRPGTYAMIFDPRDKGEPIVISSREDRHFYGHGVFSPDGRILYASENDFDGNRGMIGLYDATNRFARIGEYETYGIGPHDMTVSDDGRLLIVANGGIETHPDFGRTKLNLGAMQPSLALIDAATGALIEKHVLPAEWSQLSTRHVDLDGEGRIWFACQYEGHRKDLPPLVGHFAKGEDLSFVALPEETTRRLANYVGAIAVNRSEGLVGITSPKGGTSVTIDAKTGKVLAESAVPEAAGIAPARDGFAVSSYDGDFLATRSDVAWDQHIVRISQRARA
>NZ_CP020896.1|WP_085741592.1|305087_306164_+|DUF2252-family-protein
MTTISQSVRNFETWLAGELGGDLVKDDLLEKHEKMRSDDFVFLRATYWRWCEIILDICPELGRAPEVLAIGDTHLENFGTWRDSEGRLVWGVNDFDDAAVMPYALDLVRLAASAILARGEDGPSVRMIGELILGGYRRGLENPLPVILERDHKWLRKALMLPNSERREFWEKYEMLAPGKTKAPAAYIEALSDALPSGSRPFTAKPRSAGTGSLGRPRFVAYAEWQGGPVLREAKALVPSAWSLRHRPLDGTIRAGEIAAGRARAADPHYRVCDRILVRRLSPNSRKIEIDKHPEILLSPTMLELMGSEIANCHSNDAAAAVAILQDLQARGSEWLHEAARAAASSVSAEQKAYARAR
>NZ_CP020896.1|WP_085741591.1|304404_304854_-|PaaI-family-thioesterase
MSETDRGDFRARIRRNFARQAAMQTIGAELTRVEHGVVEIELPFDIKLTQQHGILHAGIISAALDSACGFAAYSVIDPEASILTIEFKVNLMSPGRGERFLFRGEITKPGSTIIVADGRGYAISDGPAKLIASMTGTMMVIRGREGIIG
>NZ_CP020896.1|WP_004673906.1|303769_304408_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKFELKSVAGKSMLFVMAAEAEYGPFLRSRIEPLMTGVGPVEAAVALTKTLARLDAADDLPDLVVSLGSAGSAKLEQTEIYQVTSVSYRDMDASPLGFEKGRTPFLDLPATLELPLRIPGIAEASLSTGGNVISGAAYSDIDADMVDMETYAVLRACQGYKLPLIGLRGISDGAVELQHISGWTEYLHIVDRKLSYGVDSLFTALEDGVFWF
>NZ_CP020896.1|WP_085741590.1|302091_303654_-|glutamine-hydrolyzing-GMP-synthase
MTQTAHPDSVLIVDFGSQVTQLIARRVREAGVYCEIVPFQSAEEGFKRLRPKAVILSGSPASTVDEGSPRAPQIIFDSGLPVFGICYGQQTMCMQLGGKVESGHHREFGRAFLDVDKDCQLFEGLWSSGSRHQVWMSHGDRVTALPDGFEVVATSSNAPYAFIADEKRKYYGVQFHPEVVHTPDGAKLIGNFIHNIAGIKGDWSMSAYRQKAVDEIRKQVGDKRVICALSGGVDSSVAALLIHEAVGDQLTCILVDHGLMRKDEAANVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALGRELGLPDSFIGRHPFPGPGLAIRCPGGISREKLEILREADAIYLDEIRKAGLYDAIWQAFAVLLPVQTVGVMGDGRTYEFVCALRAVTSVDGMTADFYHYDMEFLGRAATRIINEVRGINRVVYDVTSKPPGTIEWE
>NZ_CP020896.1|WP_010005376.1|300831_301230_-|glyoxalase/bleomycin-resistance-protein/dioxygenase
MKFASIRLIAADIKAMVDFYEMVTLQSAEWLAPVFAEIVTPSATLAIGSMETVSLFREGSAEAAANRTAIIEFMVDDVDAEYIRLKNNVDLVHAPKLMPWGNRSVQFRDPEGTLVALFMPFTDPAKKRFASR
>NZ_CP020896.1|WP_085741598.1|313901_314771_-|SDR-family-oxidoreductase
MHVMIFGCGYSGTAIAKAFAGQGVRVSGTTRSAEKVEVLRANGIEAFLFDGETMGDGLRRALVDVTHLVQSIAPGKADPLLRLLGEDSARLLPRLEWIGYLSTVGVYGDHKGAWVSEETPCLPVSGRSKERLEAEEGWLAIGRERGVPAAILRLSGIYGPGRNAFCNLDKGTARRLIKKDQVFNRIRVEDIGAATRFLSERGLGGIYNVTDDRPGPPQDVIVEAARLMGVEPPPEQAFETAELTPMARTFYGENKRVSNAKLKKAGFEFSFPTYPQSLAQLWQDGHWRG
>NZ_CP020896.1|WP_085741599.1|314770_315922_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MPDNDDKERRRRDNLTEFVRAESAAKGFDLCRITRPDAIPEAKQRLGQFIDAGRHGTMEWMAETRERRGDPLTLWSEVRSVVVFGLNYAPEEDPRGILGKPDKAAISVYARNRDYHDIIKGRLKEIATRFAARAGADVKVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRAHGSWLFLGSMFTTADLAVDAAETDHCGSCRACLDVCPTAAFPAPYQIDARRCISYLTIEHKGPIDPDLRPLIGNRIYGCDDCLAACPWNKFAVSASEMKLKAREDLKEPSLAFLLTLDDAAFRTFFSGSPVKRIGRDRFIRNVLIAAGNSGETALIAQCRALAGDAAPAVRGMAVWALSRLMEAGEFSAFAAQRTDESDDDVLNEWRLAGVG
>NZ_CP020896.1|WP_085741600.1|315934_316627_-|glutathione-S-transferase-family-protein
MPTLYHHPMSSASRFVRLILAEYGYQADLIEEQTWEKRRDFLALNPAGTLPVYVDDSMRALCGATVISEYLDETHGVLKRDRRLLAEDPFQRAEIRRLSEWFMQKMENDVTKPLARERVYKLQMTADQGGGAPDSKILRTARANIRQHMRYLTWLAGSRQWLAGERISYADLAAAASISILDYLGEIEWADAPVVKEWYQRLKSRPSFRPMLTERVRGLTPVSHYADLDF
>NZ_CP020896.1|WP_010006079.1|316862_317660_+|undecaprenyl-diphosphate-phosphatase
MDYINAALLGVIEGITEFLPISSTGHLIIAEQWLGHRSDMFNIVIQAGAILAVTIIYWRRLLDLVLGWREPENRDYAAKLIVAFLITAILGLVVKKLGFELPETATPIAWALIIGGIWMIFAEWAAARKAPHKQITWLVAILVGIAQIVAGVFPGTSRSGATIFVAMLAGTGNRAAATEFAFLVGIPTMYAASGYELLKTFKDGGAAGEDWTALAIAFIVSTIVAFIAVKWLLAYIRSNRFTLFAIYRIILGVLLLGMAATGLIA
>NZ_CP020896.1|WP_085741601.1|318333_319314_-|complex-I-NDUFA9-subunit-family-protein
MTLANLPPLVTVFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGFLQPLGNVGQISFVQANLRYRNSIDRAVDGASHVVNCVGILHETGRNTFDAVQEFGARAVAEAARNAGATLAHISAIGANANSDSDYGRTKGRAETAILSIKPDAVIFRPSIVFGPEDSFFNKFADMARMSPVLPLVGGGKTKFQPVYVEDVAEAVARAVDGKVAGGKVYELGGPEVLSFRECLETMLKVTSRKNRLVSLPFGIASMIGSIASLIPFVTPPITPDQVRLLKRDNVVSAEAEAEGRTLKGLGIAPTMAASVLESYLVQYRPHGQYTGSGKAA
>NZ_CP020896.1|WP_012482361.1|319425_319713_-|DUF1330-domain-containing-protein
MAKGYWIARVDVRDAERYKDYVAAAKPAFEKYGANFLARGGALTELEGKARARNVVIEFPSMQHAVDCYNSPEYQIAAKIRQEVADAEMVVVEGV
>NZ_CP020896.1|WP_085741602.1|319741_320449_-|orotidine-5'-phosphate-decarboxylase
MDARERLIVGLDVPTVGEAERLVSTLGDDILFYKIGYQLVFAGGLEFARDLAASGKKIFLDMKLLDIDNTVASGVENIARMGMSMLTLHAYPKAMRAAVEAAAGSGLCLLGVTVLTSMDAEDLAEAGYDKDPHSLVLRRAEQARAAGMGGIVCSAAEAAEVREVLGPDMAIVTPGIRPDGSDHGDQKRVMTPFDALKAGATHLVVARPIVKAPDPREAARAVLNEMVAARWPANR
>NZ_CP020896.1|WP_085741603.1|320455_321037_-|histidine-phosphatase-family-protein
MFGIYITHPQVRIDADVPVPKWGLSDVGAARARKAAESGWARQLRRIISSDETKAIETAEILAEASGVAIEIVHGMHENDRSATGFLPPPQFEEAANWFFAHPEESFKGWERAADAQARIVEAVDAVLAAHDAAAPIAFVGHGGVGTLLKCHLAGRPISRDRDQPGGGGNLYAFGLADRRLSCDWTPIEDWRG
>NZ_CP020896.1|WP_085741604.1|321038_321638_-|methyltransferase-domain-containing-protein
MRLRVKVKEHFGKRFDEEIRFFRGMMQGPKTVGSIVPTSSITAKRMASVIDMHSGLPVLELGPGTGAITKAILGRGVKPDNLVAIEYSTDFHQHLLRTYPGVHFINGDAFDLKTTLGAFGDQTFDCVISCIPLLNFPMAMRVSLLESLLDRLPPGRPVVQISYGAISPIAANPDRYHIQHFDFVMRNIPPAQLWIYRRG
>NZ_CP020896.1|WP_085741605.1|321733_322642_-|DUF72-domain-containing-protein
MKKTGTVRIGISGWTYAPWRGQFYPKDLPQKHELSYAARHFRSIEINGTFYGLQRPESFGRWRDETPEDFVFAVKGSRFITHMKRLQEIETPLANFFASGLLRLGPKLGPILWQFPPNMAFDPALFETFLSLLPHDCDAATALAKRHDGRLKGRAWLKSDADQPIRHAFEIRHDSFRSPAFIEMLRRHNVALVCADTVEWPLLMDITADFIYCRLHGSEQLYVSGYEDEALDLWAERIRAWATGGEPERATRVLAPLPSRKKGRDVYLYFDNTDKKLRAPVDADHLGERLADLMPRSDRKAA

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Crispr_ID: NZ_CP020896_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020896_2

1959250-1959338

Orphan

Consensus_repeat	Method
GCCGCTCCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020896_2

>merge|NZ_CP020896|2|1959250-1959338|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGCCGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCCGCCGCTCCGAAGAAAAAGGCTGC

>NZ_CP020896|2|2|1959250-1959338|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGC	CGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCC
GCCGCTCCGAAGAAAAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020896.1\|WP_010009074.1\|1965789_1965915_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP020896.1\|WP_004678848.1\|1947998_1948346_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP020896.1\|WP_085742409.1\|1961488_1963264_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP020896.1\|WP_085742404.1\|1948390_1950931_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP020896.1\|WP_085742411.1\|1965940_1967128_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP020896.1\|WP_004678841.1\|1954275_1954419_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP020896.1\|WP_085742410.1\|1963424_1964228_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|197317
NZ_CP020896.1\|WP_085742408.1\|1960973_1961396_+\|ketosteroid-isomerase	unknown	unknown	gnl\|CDD\|226158
NZ_CP020896.1\|WP_085742412.1\|1970095_1970428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020896.1\|WP_010004081.1\|1969135_1969795_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP020896.1\|WP_004678846.1\|1950935_1951322_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP020896.1\|WP_085742407.1\|1956854_1957445_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP020896.1\|WP_004673836.1\|1964284_1965691_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP020896.1\|WP_085742406.1\|1955763_1956858_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP020896.1\|WP_064821907.1\|1951324_1952182_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP020896.1\|WP_010009072.1\|1967230_1968055_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP020896.1\|WP_037117799.1\|1952252_1952720_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020896.1\|WP_004678838.1\|1954718_1954865_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP020896.1\|WP_004673840.1\|1968062_1968899_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP020896.1\|WP_085742405.1\|1952740_1954177_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416

Protein	Function_ID	Function_description	E-value
NZ_CP020896.1\|WP_010009074.1\|1965789_1965915_-\|hypothetical-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.01879e-08
NZ_CP020896.1\|WP_004678848.1\|1947998_1948346_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	4.2566e-32
NZ_CP020896.1\|WP_085742409.1\|1961488_1963264_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	4.95509e-21
NZ_CP020896.1\|WP_085742404.1\|1948390_1950931_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP020896.1\|WP_085742411.1\|1965940_1967128_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.06984e-157
NZ_CP020896.1\|WP_004678841.1\|1954275_1954419_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	9.51621e-12
NZ_CP020896.1\|WP_085742410.1\|1963424_1964228_-\|metal-dependent-hydrolase	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	4.10115e-12
NZ_CP020896.1\|WP_085742408.1\|1960973_1961396_+\|ketosteroid-isomerase	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	6.16615e-10
NZ_CP020896.1\|WP_010004081.1\|1969135_1969795_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.28426e-09
NZ_CP020896.1\|WP_004678846.1\|1950935_1951322_+\|membrane-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	1.54923e-59
NZ_CP020896.1\|WP_085742407.1\|1956854_1957445_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	3.94166e-45
NZ_CP020896.1\|WP_004673836.1\|1964284_1965691_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP020896.1\|WP_085742406.1\|1955763_1956858_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	3.1433e-42
NZ_CP020896.1\|WP_064821907.1\|1951324_1952182_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	3.68533e-59
NZ_CP020896.1\|WP_010009072.1\|1967230_1968055_-\|JAB-domain-containing-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.27144e-107
NZ_CP020896.1\|WP_004678838.1\|1954718_1954865_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.56647e-09
NZ_CP020896.1\|WP_004673840.1\|1968062_1968899_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.87967e-163
NZ_CP020896.1\|WP_085742405.1\|1952740_1954177_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0

>NZ_CP020896.1|WP_085742407.1|1956854_1957445_+|GDYXXLXY-domain-containing-protein
MSSWMARLQSGKGYLLSAVIVAGLQTIILGTIIQSRASILSNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEPGERTLWVRLKKQADGFWTVTESSFDTLPPQPETVILRSQPFYSGGLAASDSIRVEYGIERYYVPEGQGKPLEEARNDGNVAIAVRVSADGRAQIRSLLVDGKPVYDEPLY
>NZ_CP020896.1|WP_085742406.1|1955763_1956858_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGEETAGVLLAEYDSRPASFSLGRVLMALAAVLLAAAVLLVVASNWEAIPRLVRVGAILALIWAVHIAAALMLARGAAAAAGGLLVIGAMSFGGAISLVGQMYHLSGDEQTVMYLWFAIAAVSAILFRSAAVVVVAGFLSWASFAVYLENHDTHWIGLDPWMAPVMAVIVIALVRYTGAARARHLAYLLLIGWLAWLYTLYEEMAVALAFAVGGMAGVVLTALPHPRIAPLVRSAGAAPAFYSSLVAAIGFLLLHIEIEQGWRLVVLGLATLAAAVLAIALHGRNNGAVRYLAYTTFAAEMLYLASVTVGSILGTSSLFLFSGLVVAFVAWIVIRLERRFSREARA
>NZ_CP020896.1|WP_004678838.1|1954718_1954865_-|DUF1127-domain-containing-protein
MNITRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASSR
>NZ_CP020896.1|WP_004678841.1|1954275_1954419_-|DUF1127-domain-containing-protein
MNPIRIAKSWLSYRRTLNELGSLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP020896.1|WP_085742405.1|1952740_1954177_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRHQVPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLESAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAILLPPATTALGSLLGHITGGHIVTDEEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKRFRGKDKTIMKRQLIARRALADCAAWLGQTSRAVESASA
>NZ_CP020896.1|WP_037117799.1|1952252_1952720_+|hypothetical-protein
MGIIVWCVLFAIVIFIAFVATRMAAQNKEDSLHDTGLAIIEFGRAFPNEAIRQLQATENGQAIFVRLHDNKAGLMRNMARHFSCHLIEPGRVRVVSSETGRGLAIDFLDAPNHNGKFEFASPKEASEVALWLLGNYIAEPDKDLPPGNISAANKQ
>NZ_CP020896.1|WP_064821907.1|1951324_1952182_+|phytoene/squalene-synthase-family-protein
MAEENIATNQDICLAMLRDSDRDRYLACLLSPQDRRGALAALYAFNAELARIRDLVHEPLPGEVRMQYWRDLLEGSAHGSTAANPVAAALLTAIETHRLPRKTLVDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPQDAARSADAAGHAGVAQAIAGLLLLMPLHRRRGQLYIPLQILSATGLDRDSFLAGKDRPRIAAAVEAFAGLGREHLAKARGAGPIAPAVFPAFLPATLAEPVLLKAQRRGAQLFDRPLQPPQWRRQLAMALAAARRKI
>NZ_CP020896.1|WP_004678846.1|1950935_1951322_+|membrane-protein
MAKGIEIRAAHFPGRAPIDTYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLEEAADIEVLLVGTGTELRRLPEELKQALKARGIASDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP020896.1|WP_085742404.1|1948390_1950931_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVMLGLDLQGGSHIVLKVERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTTTGRDSAPELTLQRGGEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYVNFLVRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVVDAQTQDTSIAYRLDAEGTKRLAEVTGQNIGKHLAIVFDDQVMSAPVIDVAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLVYERIREEEKTAHSFAEAVGRGFSRAFATIVDANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRRPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEADYDFRRVEVVGPAISGELTMMATLGIAAALAAILLYIWIRFEWQFAVGAIIATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTKMPLPILIDASINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
>NZ_CP020896.1|WP_004678848.1|1947998_1948346_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVVDDKEVEVEIAEGVRVRIVRSGISEVRVKGEPVKADAA
>NZ_CP020896.1|WP_085742408.1|1960973_1961396_+|ketosteroid-isomerase
MTAKHDMKKLVEEIYAVRDRGDIEGTLALIGDDCTFRMAGNTRLSPLSTELGGNAFRQMIAQLITEWDLSNIDTTRIYVDEDENMVFAHREGEVRHIPSGVSFYTEYVDKIHFRDGKPVKIVEFVDTLQVAETSQIIQIA
>NZ_CP020896.1|WP_085742409.1|1961488_1963264_-|radical-SAM-protein
MSHALEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERQVLGPDTAIDITVIDETNTRVDFARLLAQFKRHGNFGMVALVGVQSNQYPRALDIARPFRNAGLPVSMGGFHVSGCLSMLDGQAVGLDACRDMGISMFAGEAEGRLDMVLRDAASGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGVEMDGDLNIYDVEHVCTAHPKMSKQQWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPELPRENPLLFWPRFAWETFRKHASLAGTIIGLTISAFLISRDAKSKAYMDQALTPVADDEQETLSLFTKTSGGTAAVSHVRKVAQLTRGVN
>NZ_CP020896.1|WP_085742410.1|1963424_1964228_-|metal-dependent-hydrolase
MRIISLNAWGGSLHEALIDYVRQADADVLCLQEVLRAPDCGSGWSIYRDAGLELPQRANLFAEIGAALPGHDGFFCPTSRGTLFDGDAAIVAEFGLATFVRKSHSVIAQAMDFMHGSFSASGWGEHPRPRNAHCIRVFSHANASAITIAHMHGLRDPAGKGDTPAREEQALALAGLVGRVWPGNEGLVVCGDFNVLPDSATFNILARLGLSDLVTGNGLVDTRTSYYLKQGRFADYMLVTPEVKVARFEVVATPEVSDHRALLLDIV
>NZ_CP020896.1|WP_004673836.1|1964284_1965691_-|Si-specific-NAD(P)(+)-transhydrogenase
MFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKQEISAEDLRRRLLITLNHEVEVLEHQFARNRVHHMRGKASFVDASTLQVVKDDGEITQVSAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQELPRSMIVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIVEDFTYQLRDRNMKLLLGQKADKVETLENGKVELTLDSGRRLTTDMVLFAAGRMGATDTLNLEAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAIGAVAKEPQKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP020896.1|WP_010009074.1|1965789_1965915_-|hypothetical-protein
MTKVIIDAAKALDIIVHDQIIIGKNGHVGLKGLTLIAHRSG
>NZ_CP020896.1|WP_085742411.1|1965940_1967128_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSTRLCRDVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSTRSTATSLFGKTHAVPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAASPQAWFQAYLPGEPDRIDALIDRVAAAGIETLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIARHGIPHFENSYATRGAPIISSNVTRDFGKRDHLNWSHLERIRKRWSGKLVVKGIMHPEDASRAADTGADGVIVSNHGGRQLDGTASPLQVLPEIAARVGDSIAVMVDGGIRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLRAADILKTELYSNMALLGVTRVGDISADYITRA
>NZ_CP020896.1|WP_010009072.1|1967230_1968055_-|JAB-domain-containing-protein
MAKRPAATSSDDELPFATEEPVADERSFFGGRPQNPTAPNARTALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLSGVFGAPAALLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKVIIEAAKALDITVHDHIIIGKDGHVSLKGLKLI
>NZ_CP020896.1|WP_004673840.1|1968062_1968899_-|type-I-methionyl-aminopeptidase
MVNYIEASSAPPKNTGAIRLYDTQAFDGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLREGDIVNIDVTFVLDGWHGDSSRMYPVGTVKRAAERLLEVTYESLMRGIAAVRPGARTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTADGCEIFTLSPAGLDRPGLPSLAR
>NZ_CP020896.1|WP_010004081.1|1969135_1969795_+|TetR/AcrR-family-transcriptional-regulator
MLNEAVNLDSSPGAGGEPERRVRDRGATERAILVAAKGLLAEEGFQNFGINAVARRAGCDKQLIYRYYGGLDGLVEAIGADLGTWVRDRIPEDAGGMFLLTYGDLMERLALLLLDALRNDPLMRRILAWEVSENTEQVRRLSEARSKALALWLDRMRGSLAPPKGVDATAVNAVVIAAIQHLVLAGAAGGQCAGLSLKTSKDWEKAATALKRLVRGVYG
>NZ_CP020896.1|WP_085742412.1|1970095_1970428_+|hypothetical-protein
MRWFLIFWAGPIVFLGGWYWLSYYDINFGFLMLTRQIHDLTFQIYGEALGMPPEAIPPLVARAIAVDSLVVFAILGFRKRKPIMAWRQARQALNASPSDLASKESLSSAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

499881 : 571047

Staphylococcus_phage(14.29%)

transposase,integrase

attL 501270:501287|attR 571364:571381

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085741690.1\|499881_501078_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_085741691.1\|501171_502797_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
501270:501287	attL	NA	NA	NA	NA
WP_085741692.1\|502937_504638_-	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.0e-31	25.4
WP_085741693.1\|504900_505293_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_085741694.1\|505449_507906_-	glycoside hydrolase family 2 protein	NA	NA	NA	NA
WP_010001571.1\|507971_508367_-	putative lactoylglutathione lyase	NA	NA	NA	NA
WP_085741695.1\|508414_509164_-	ABC transporter permease	NA	NA	NA	NA
WP_085741696.1\|509160_510105_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.8e-21	30.4
WP_085741697.1\|510101_511268_-	ABC transporter permease	NA	NA	NA	NA
WP_004668856.1\|511326_512235_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009998767.1\|512421_512661_-	hypothetical protein	NA	NA	NA	NA
WP_085741698.1\|512655_513885_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_085741699.1\|513881_514607_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_085741700.1\|514798_515818_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_004675089.1\|515881_516856_-	ABC transporter permease	NA	NA	NA	NA
WP_004675086.1\|516883_518437_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-11	22.6
WP_085741701.1\|518556_519546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004676000.1\|519752_520202_-	fucose dissimilation pathway protein	NA	NA	NA	NA
WP_085743560.1\|520212_521232_-	aldo/keto reductase	NA	NA	NA	NA
WP_085741702.1\|521270_522773_-	altronate dehydratase	NA	NA	NA	NA
WP_012482541.1\|523036_523936_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_085741703.1\|525359_527309_+	ABC transporter ATP-binding protein/permease	G3M9Y6	Bacillus_virus	6.6e-14	29.8
WP_041684105.1\|527305_528262_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_085741704.1\|528469_529960_-	MFS transporter	NA	NA	NA	NA
WP_085743561.1\|530186_530555_-	hypothetical protein	NA	NA	NA	NA
WP_085741705.1\|530719_531193_-	hypothetical protein	NA	NA	NA	NA
WP_085741706.1\|531595_532555_-	nitronate monooxygenase	NA	NA	NA	NA
WP_085743562.1\|532840_534040_+	regulator	NA	NA	NA	NA
WP_010020420.1\|534111_534993_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_085741707.1\|535234_536455_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	2.0e-32	35.7
WP_016734872.1\|537016_538051_+	phosphonate ABC transporter substrate-binding protein	A0A1B1IWY0	uncultured_Mediterranean_phage	4.2e-68	43.4
WP_085741708.1\|538217_539699_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_016734870.1\|539695_541018_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_004672770.1\|541033_541849_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.4e-15	30.5
WP_004672769.1\|541893_542607_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_004672768.1\|542739_543423_+	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	5.4e-40	39.4
WP_064824991.1\|543600_544704_+\|transposase	transposase	NA	NA	NA	NA
WP_012482559.1\|545259_545793_-	hypothetical protein	NA	NA	NA	NA
WP_085741709.1\|546218_547418_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.2e-26	30.0
WP_064817384.1\|547455_548370_+	ornithine carbamoyltransferase	M1HGA5	Paramecium_bursaria_Chlorella_virus	4.0e-22	28.7
WP_064826879.1\|548459_549452_+	Hsp33 family molecular chaperone	NA	NA	NA	NA
WP_010004993.1\|549559_550147_+	hypothetical protein	NA	NA	NA	NA
WP_064824991.1\|550660_551764_-\|transposase	transposase	NA	NA	NA	NA
WP_004677057.1\|551882_552275_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_085741710.1\|552490_553675_-	O-succinylhomoserine sulfhydrylase	NA	NA	NA	NA
WP_012482565.1\|553872_554964_+	2'-deoxycytidine 5'-triphosphate deaminase	NA	NA	NA	NA
WP_085741711.1\|555283_556489_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.8e-79	42.7
WP_085741712.1\|556552_556930_-	hypothetical protein	NA	NA	NA	NA
WP_085741713.1\|557072_559517_+	DEAD/DEAH box helicase family protein	A0A088C524	Shewanella_sp._phage	7.5e-07	23.0
WP_159458856.1\|559518_560382_+	FRG domain-containing protein	NA	NA	NA	NA
WP_085741714.1\|560387_561842_+	SAM-dependent DNA methyltransferase	J7I0U9	Acinetobacter_phage	6.0e-28	29.1
WP_085741715.1\|561838_563596_+	hypothetical protein	NA	NA	NA	NA
WP_085741716.1\|563592_565083_+	hypothetical protein	NA	NA	NA	NA
WP_085741717.1\|565364_565928_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_010000772.1\|565927_566281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_125461082.1\|566452_566905_+	hypothetical protein	NA	NA	NA	NA
WP_085741719.1\|566864_568067_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_085741720.1\|568063_568474_+	hypothetical protein	NA	NA	NA	NA
WP_085741721.1\|568570_569122_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	8.0e-26	40.1
WP_010009575.1\|570015_571047_+\|transposase	IS110 family transposase	NA	NA	NA	NA
571364:571381	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1088261 : 1131074

Leptospira_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085741955.1\|1088261_1089593_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_085741956.1\|1089798_1091532_-	DUF4166 domain-containing protein	NA	NA	NA	NA
WP_085741957.1\|1091528_1091978_-	DUF393 domain-containing protein	NA	NA	NA	NA
WP_085743586.1\|1091999_1092908_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_085741958.1\|1093217_1093799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085741959.1\|1093808_1094867_-	hypothetical protein	NA	NA	NA	NA
WP_085741960.1\|1094863_1095610_-	hypothetical protein	NA	NA	NA	NA
WP_089152651.1\|1096132_1097321_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.3e-48	41.3
WP_085741723.1\|1097515_1097920_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010009780.1\|1097916_1098267_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085741722.1\|1098326_1099958_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.0e-84	43.7
WP_051679588.1\|1101822_1102002_-	hypothetical protein	NA	NA	NA	NA
WP_085741962.1\|1107265_1108045_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_085741690.1\|1108319_1109516_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_085741964.1\|1109864_1110479_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_085741965.1\|1110589_1111276_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_011424367.1\|1111322_1111604_+	hypothetical protein	NA	NA	NA	NA
WP_085741966.1\|1111698_1115094_+	acyl-[ACP]--phospholipid O-acyltransferase	A0A2K9L3I8	Tupanvirus	2.0e-05	22.3
WP_085741967.1\|1115374_1116565_-	TCR/Tet family MFS transporter	NA	NA	NA	NA
WP_085741969.1\|1117694_1120670_+	phosphoglycerate dehydrogenase	NA	NA	NA	NA
WP_085741970.1\|1120896_1121847_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_004674119.1\|1122057_1122465_-	hypothetical protein	NA	NA	NA	NA
WP_085741971.1\|1123293_1124505_+	Fic family protein	D7RWK9	Brochothrix_phage	4.8e-31	30.1
WP_010033943.1\|1124768_1125008_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_010008099.1\|1125034_1125262_-	hypothetical protein	NA	NA	NA	NA
WP_004673750.1\|1125275_1125539_-	hypothetical protein	NA	NA	NA	NA
WP_037143878.1\|1126342_1126990_-	transcriptional regulator	NA	NA	NA	NA
WP_085741972.1\|1127073_1127307_+	hypothetical protein	NA	NA	NA	NA
WP_010004468.1\|1127534_1127801_+	hypothetical protein	NA	NA	NA	NA
WP_085741973.1\|1127826_1128195_+	hypothetical protein	NA	NA	NA	NA
WP_064817667.1\|1128160_1128559_+	hypothetical protein	NA	NA	NA	NA
WP_016734508.1\|1128555_1128849_+	GcrA cell cycle regulator	NA	NA	NA	NA
WP_004678189.1\|1128845_1129043_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085741974.1\|1129055_1129649_+	hypothetical protein	NA	NA	NA	NA
WP_085741975.1\|1129970_1131074_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1544913 : 1554336

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085742182.1\|1544913_1546212_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.1e-97	51.4
WP_003547190.1\|1546221_1546698_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_085742183.1\|1546701_1548105_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.6e-33	36.5
WP_064817897.1\|1548104_1548716_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-17	35.6
WP_085742184.1\|1548953_1549823_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	5.2e-96	59.7
WP_085742185.1\|1549832_1550720_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_085742186.1\|1550723_1551779_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.0e-95	51.2
WP_085742187.1\|1551785_1552364_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.1e-36	47.5
WP_085742188.1\|1552353_1554336_-	glycosyltransferase family 1 protein	F2Y0P4	Organic_Lake_phycodnavirus	8.8e-06	36.4

DBSCAN-SWA_4

1860991 : 1880996

Rhizobium_phage(62.96%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085742332.1\|1860991_1861504_-	hypothetical protein	A0A068C9C1	Rhizobium_phage	8.2e-49	59.5
WP_085742333.1\|1861503_1862079_-	hypothetical protein	M4QPF4	Loktanella_phage	1.3e-42	44.9
WP_085743616.1\|1862068_1862503_-	hypothetical protein	B2ZY33	Ralstonia_phage	8.8e-36	57.0
WP_085742334.1\|1862603_1863053_-	hypothetical protein	NA	NA	NA	NA
WP_085742335.1\|1863052_1863601_-	DUF1643 domain-containing protein	A0A068CDG1	Rhizobium_phage	2.3e-97	89.0
WP_085742336.1\|1863597_1863924_-	hypothetical protein	NA	NA	NA	NA
WP_085742337.1\|1863920_1864139_-	hypothetical protein	A0A068C9D0	Rhizobium_phage	8.3e-27	79.2
WP_085742338.1\|1864132_1864624_-	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	1.3e-80	84.6
WP_085742339.1\|1864620_1865052_-	DUF4326 domain-containing protein	A0A068CH91	Rhizobium_phage	2.1e-66	82.1
WP_085742340.1\|1865048_1865516_-	hypothetical protein	NA	NA	NA	NA
WP_085742341.1\|1865512_1865983_-	hypothetical protein	A0A068C9D4	Rhizobium_phage	5.0e-69	84.9
WP_085742342.1\|1865979_1867176_-	phage Gp37/Gp68 family protein	A0A068CDH0	Rhizobium_phage	2.6e-215	84.4
WP_085742343.1\|1867679_1867940_-	hypothetical protein	NA	NA	NA	NA
WP_085742344.1\|1867932_1868307_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	8.7e-40	63.6
WP_159458861.1\|1868306_1868456_-	hypothetical protein	A0A068C9D8	Rhizobium_phage	6.7e-12	82.6
WP_125461093.1\|1868445_1868706_-	hypothetical protein	A0A068CCC7	Rhizobium_phage	1.6e-16	60.6
WP_085742346.1\|1868698_1869031_-	hypothetical protein	NA	NA	NA	NA
WP_010007197.1\|1869157_1869361_-	hypothetical protein	A0A068C9E4	Rhizobium_phage	3.9e-18	76.9
WP_125461095.1\|1869435_1870158_-	SAM-dependent methyltransferase	M4M9L8	Vibrio_phage	1.5e-19	37.1
WP_085743617.1\|1870250_1870457_-	hypothetical protein	NA	NA	NA	NA
WP_010007205.1\|1870692_1870938_+	hypothetical protein	A0A291AUS0	Sinorhizobium_phage	3.2e-11	43.7
WP_125461147.1\|1870934_1871639_-	helix-turn-helix domain-containing protein	A0A291AUR9	Sinorhizobium_phage	1.0e-89	67.9
WP_010007209.1\|1871725_1871977_+	hypothetical protein	A0A291AUR8	Sinorhizobium_phage	4.5e-16	52.4
WP_089152653.1\|1872272_1872761_+	hypothetical protein	A0A068CCD6	Rhizobium_phage	4.1e-74	90.1
WP_085742348.1\|1872763_1872994_+	hypothetical protein	NA	NA	NA	NA
WP_085743618.1\|1873104_1873842_+	hypothetical protein	NA	NA	NA	NA
WP_010005988.1\|1873834_1874230_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010005989.1\|1874222_1874573_+	helix-turn-helix domain-containing protein	A0A0B5A598	Paracoccus_phage	2.5e-09	45.9
WP_085742349.1\|1874569_1876123_+	hypothetical protein	A0A068C9F4	Rhizobium_phage	7.2e-181	65.9
WP_085742350.1\|1876119_1876470_+	hypothetical protein	NA	NA	NA	NA
WP_085742351.1\|1876459_1876735_+	hypothetical protein	A0A068CHB1	Rhizobium_phage	8.9e-34	81.1
WP_085742352.1\|1876731_1876935_+	hypothetical protein	A0A068CE57	Rhizobium_phage	5.8e-14	58.7
WP_085742353.1\|1876931_1877225_+	hypothetical protein	A0A068C9G0	Rhizobium_phage	2.7e-36	79.2
WP_085742354.1\|1877221_1879345_+	DNA cytosine methyltransferase	A0A068CDI9	Rhizobium_phage	0.0e+00	75.7
WP_085742355.1\|1879341_1880247_+	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	1.3e-89	61.7
WP_085742356.1\|1880243_1880492_+	hypothetical protein	A0A068CHB5	Rhizobium_phage	2.0e-24	65.9
WP_085742357.1\|1880570_1880996_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PD76	Moraxella_phage	1.4e-17	43.4

DBSCAN-SWA_5

1885098 : 1913908

Rhizobium_phage(40.0%)

terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085742364.1\|1885098_1886895_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	5.1e-170	52.2
WP_085742365.1\|1886894_1887095_+	hypothetical protein	NA	NA	NA	NA
WP_085742366.1\|1887094_1888420_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.4e-60	34.7
WP_085742367.1\|1888409_1889534_+	S49 family peptidase	A0A0K2FHL6	Achromobacter_phage	9.9e-31	38.2
WP_085742368.1\|1889639_1890977_+\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	5.3e-47	35.7
WP_085742369.1\|1891042_1891528_+	hypothetical protein	NA	NA	NA	NA
WP_085742370.1\|1891598_1892222_+	hypothetical protein	NA	NA	NA	NA
WP_085742371.1\|1892225_1892891_+	hypothetical protein	F8TVA2	EBPR_siphovirus	5.1e-35	41.6
WP_009998304.1\|1892892_1893267_+	hypothetical protein	NA	NA	NA	NA
WP_085742372.1\|1893266_1893914_+	hypothetical protein	F8TVA4	EBPR_siphovirus	3.2e-26	36.6
WP_085742373.1\|1893918_1894365_+	hypothetical protein	NA	NA	NA	NA
WP_085743619.1\|1894454_1895387_+	hypothetical protein	A0A125SA50	Pseudomonas_phage	3.3e-40	34.5
WP_085742374.1\|1895493_1895937_+	hypothetical protein	NA	NA	NA	NA
WP_085742375.1\|1895960_1896308_+	hypothetical protein	NA	NA	NA	NA
WP_085742376.1\|1896336_1899525_+	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	1.1e-34	29.1
WP_085743620.1\|1899582_1900287_+	hypothetical protein	NA	NA	NA	NA
WP_085742377.1\|1900289_1900901_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	3.2e-68	56.3
WP_010001691.1\|1900907_1901333_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	8.4e-23	38.0
WP_085742378.1\|1901329_1903546_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	3.3e-203	53.3
WP_085742379.1\|1903561_1905070_+	hypothetical protein	A0A076G7H5	Sinorhizobium_phage	2.5e-53	56.8
WP_085742380.1\|1905073_1905838_+	hypothetical protein	L7TMF7	Rhizobium_phage	2.8e-13	32.8
WP_085742381.1\|1905834_1906419_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_010006594.1\|1906590_1906923_+	hypothetical protein	NA	NA	NA	NA
WP_085742382.1\|1908646_1909171_+	N-acetylmuramoyl-L-alanine amidase	A0A068CC96	Rhizobium_phage	1.0e-86	86.2
WP_085742383.1\|1909170_1909491_+	hypothetical protein	A0A068CH73	Rhizobium_phage	2.8e-31	66.7
WP_085742384.1\|1909487_1909847_+	hypothetical protein	A0A068CE23	Rhizobium_phage	8.6e-45	83.2
WP_159458862.1\|1910093_1910885_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_010008740.1\|1911071_1911314_+	hypothetical protein	R9TQH1	Rhizobium_phage	3.1e-14	52.0
WP_010008742.1\|1911310_1911505_+	hypothetical protein	R9TP66	Rhizobium_phage	3.6e-05	43.1
WP_010008744.1\|1911501_1911981_+	hypothetical protein	R9TRQ6	Rhizobium_phage	4.1e-42	49.7
WP_010008746.1\|1911981_1912170_-	hypothetical protein	NA	NA	NA	NA
WP_010008748.1\|1912166_1912415_-	hypothetical protein	NA	NA	NA	NA
WP_085742386.1\|1912837_1913908_+	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	5.6e-140	68.7

DBSCAN-SWA_6

1937834 : 1950931

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085743623.1\|1937834_1938848_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.8e-24	42.6
WP_029531141.1\|1938866_1939724_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_064818073.1\|1939720_1940425_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.7e-41	48.2
WP_003558879.1\|1940606_1940798_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.8e-08	69.8
WP_085742400.1\|1940849_1941476_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_004678862.1\|1941472_1942300_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.8e-53	46.1
WP_085742401.1\|1942396_1943680_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.7e-99	45.8
WP_085742402.1\|1943684_1944458_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.0e-23	30.2
WP_004678857.1\|1944454_1945108_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-16	35.7
WP_085742403.1\|1945247_1946837_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_010004490.1\|1946922_1947795_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1947998_1948346_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_085742404.1\|1948390_1950931_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.3e-58	50.2

DBSCAN-SWA_7

2165932 : 2176215

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085742503.1\|2165932_2168854_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.1
WP_004671899.1\|2169136_2169652_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	72.9
WP_004671901.1\|2169754_2170402_-	MarC family protein	NA	NA	NA	NA
WP_085742504.1\|2170639_2173462_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	3.0e-76	42.6
WP_037114157.1\|2174182_2174461_-	hypothetical protein	NA	NA	NA	NA
WP_004671912.1\|2174551_2175046_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.7e-25	37.8
WP_004671914.1\|2175104_2175677_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.5e-43	53.2
WP_004671916.1\|2175705_2176215_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-44	58.8

DBSCAN-SWA_8

3921885 : 3932172

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016737530.1\|3921885_3922596_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.7e-50	48.7
WP_085743311.1\|3922595_3922952_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_085743312.1\|3922948_3923677_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	3.1e-41	38.6
WP_037141529.1\|3923772_3925017_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	3.2e-14	30.0
WP_085743313.1\|3925119_3926094_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.1e-139	75.4
WP_085743314.1\|3926290_3928495_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.0e-212	51.7
WP_010007102.1\|3928473_3928878_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A249Y1D6	Staphylococcus_phage	6.1e-07	34.8
WP_004677360.1\|3928894_3929116_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.3e-16	52.1
WP_085743315.1\|3929928_3932172_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.5e-126	41.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020896

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection