CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014644	Gardnerella vaginalis ATCC 14019, complete sequence	4 crisprs	cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	0	20	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014644_1

418194-418331

Orphan

Consensus_repeat	Method
CCTCGTCAGGGCGGCGGTAATGGC	PILER-CR

2 spacers

The CRISPR arrays of NC_014644_1

>merge|NC_014644|1|418194-418331|PILER-CR
CCTGGTCAGGGCGGCGGTAATGGCAACGGCGGTGGTCGCGGTCGCGGTGGTCGCGGAGGCGCTCGTCAGGGCGGCGGTAATGGTTCGAACCGCTCTTCGCAGTGGTCTGGTTCACATCGTCAGGGCGGCGGTAATGGC

>NC_014644|1|1|418194-418331|PILER-CR
CCTGGTCAGGGCGGCGGTAATGGC	AACGGCGGTGGTCGCGGTCGCGGTGGTCGCGGAGGC
GCTCGTCAGGGCGGCGGTAATGGT	TCGAACCGCTCTTCGCAGTGGTCTGGTTCA
CATCGTCAGGGCGGCGGTAATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014644.1\|WP_004111993.1\|429486_430494_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|273373
NC_014644.1\|WP_004111973.1\|416145_417195_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_014644.1\|WP_162861258.1\|423941_425006_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|236435
NC_014644.1\|WP_009993790.1\|422295_423633_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
NC_014644.1\|WP_004115946.1\|406059_408804_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NC_014644.1\|WP_004111987.1\|426254_426956_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|350159
NC_014644.1\|WP_004115940.1\|410839_411511_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|238279
NC_014644.1\|WP_009994443.1\|414971_415925_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_004118354.1\|413190_414525_+\|C1-family-peptidase	unknown	unknown	gnl\|CDD\|238328
NC_014644.1\|WP_013399447.1\|421003_422206_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_014644.1\|WP_004575086.1\|409842_410808_+\|laccase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376831
NC_014644.1\|WP_009994439.1\|404529_405210_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NC_014644.1\|WP_009993784.1\|427239_428421_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
NC_014644.1\|WP_009993787.1\|425769_426246_+\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_004111977.1\|420385_420967_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_014644.1\|WP_004115945.1\|408930_409788_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NC_014644.1\|WP_004115907.1\|428503_429490_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NC_014644.1\|WP_004111957.1\|405355_405625_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_014644.1\|WP_004111967.1\|411620_413012_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|274008
NC_014644.1\|WP_004111995.1\|430523_431303_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184587

Protein	Function_ID	Function_description	E-value
NC_014644.1\|WP_004111993.1\|429486_430494_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.44785e-95
NC_014644.1\|WP_004111973.1\|416145_417195_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	4.26999e-150
NC_014644.1\|WP_162861258.1\|423941_425006_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NC_014644.1\|WP_009993790.1\|422295_423633_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.90866e-68
NC_014644.1\|WP_004115946.1\|406059_408804_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NC_014644.1\|WP_004115940.1\|410839_411511_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|238279	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.	7.31532e-48
NC_014644.1\|WP_004118354.1\|413190_414525_+\|C1-family-peptidase	gnl\|CDD\|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	0
NC_014644.1\|WP_013399447.1\|421003_422206_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.77858e-101
NC_014644.1\|WP_004575086.1\|409842_410808_+\|laccase-domain-containing-protein	gnl\|CDD\|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	4.03475e-55
NC_014644.1\|WP_009994439.1\|404529_405210_+\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.11815e-47
NC_014644.1\|WP_009993784.1\|427239_428421_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.79744e-64
NC_014644.1\|WP_004111987.1\|426254_426956_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.20425e-68
NC_014644.1\|WP_004111977.1\|420385_420967_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.53674e-38
NC_014644.1\|WP_004115945.1\|408930_409788_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	2.20681e-97
NC_014644.1\|WP_004115907.1\|428503_429490_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.08692e-84
NC_014644.1\|WP_004111957.1\|405355_405625_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.32135e-53
NC_014644.1\|WP_004111967.1\|411620_413012_+\|cell-division-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.18534e-05
NC_014644.1\|WP_004111995.1\|430523_431303_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184587	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional.	0

>NC_014644.1|WP_004111973.1|416145_417195_+|transcription-termination/antitermination-protein-NusA
MELDLAGMHQLAAQQGINAEELDEALAEALRLAYMKTSHPARHARVELDERAGSFTVWAKDEIPGVPTEDNPHPAPTLGEEYDDTPRDFGRLAAATARQVITQLFRKVEDDRVFGAFSGQKGKLINGVVQQDSKDPSNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARGLRGPEIVVSRSHPDLVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPGGSRVRAVMENLGPEKIDIVDWSEDPAKFVAAALSPATATQVHVVSEKSQTAVAFIHDSQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKQEEMNADSKVSAE
>NC_014644.1|WP_009994443.1|414971_415925_-|hypothetical-protein
MQTQFVLLRSLLERTKHNQKRNQKHTQNHLLIVAALMTITMLFSACSSTKELKNNNLHSLQNHEPCYKIMQKAKSIQEKVDKKINNLTSKDLKNASDTWKKVAVQCNSRFAQGVVFSAQNIWKLANLNQTGNAETIKLAEQLELNSYKKIQDFADNNKNLYWNHDPLAKAAVAQDKLAFLLQTLAARDAKNVSLRQSDMTATISNTLMHFASSGSDLRQKVYEIPKQNLESGIAKDNATGKELPIVAIAYMDCAREELDALNQTIFPINKDGKINNDAIVSIENQDFIGVLADIVVSHIISAYSNGYPTDDSAIFEQ
>NC_014644.1|WP_004118354.1|413190_414525_+|C1-family-peptidase
MTEISELSAEALQGLRDDFDANPLNRLAMNGVTAAGIDKVARNYDRARLLQRRFSTVVDNGDARHQDHSGRCWLFSSLNVARFVAKKTLKVKDFEFSQNYAMYFDKLERINYFLKDVAALVRSGEPADSRLVQHLLHDVMGDGGQWTMAMNVYKKYGAVPKDLYPETESSKDTDAMNTQLRRLLRTAVAHMYANAADIDDIIAETTAAGHRILTIHLGEPPKSFDWEWTDEDGKFHRDGEITPVEFWKKYVTAGLEDYVCLVDDPRAEHPKGKKIAIEHLGNVAGGDATEYLNVPNQFMKDCVRKILVEQGIPVWFGADCHPMMDRVNGAWATDLFEYDRVYGVDFDLNKEQRVRFADSAMNHAMAFAGVDVAEDGTTTRRWRVENSWGADIADKGYFTMSDDWFTEYVYEVAVPKALLPEEYRKALEEPAIVLPAWDPMGALA
>NC_014644.1|WP_004111967.1|411620_413012_+|cell-division-protein
MVPDRFPTALRGYDKDKVNEAFSNYERTISRLREQVRSSDESILQLQAQLQEEKNNVKRAKSGNTFASLGANAQQLLASAEQTSSQLIERAKQDAASIKKTAQAQAGTLLNNAKLDAEHLLQEAQTKADTLLSTASNKASQMTSAAKEDSQRLRETTNKDVTAQRDAATLEINNAREEHTKRMASEKSEQERAIAQLKADAAQKIAEQRSAANAEIAHAKAETNDQIESALAEANKKLADMQERATKMMADAQRKAGEITDAAAAKAQEIADEAQVERTRTLSQVSAEVEQIRNDIAAQQEEATKKVNELISGLKEREHAAQEEADALVARAKTIHQDADNYAAQAHKDADAQAAQIVRKAMQDATAQVEERRAAAQQELDGMTARLTQLQHREAQITQRVTELRSLFANAFSGFDFGDAVSGQGHSGDSADADASDNSDADAQKQARKDAQAQVEEAIAQES
>NC_014644.1|WP_004115940.1|410839_411511_+|pyroglutamyl-peptidase-I
MKQINVVISGFGPYADLSVNPSYEVPLALEQYSSQELDLPEDVRVNIKSVMLPISFANAWPQLLEMINAQDADIVIATGVKHTARGVQLERCATNIMDATKPDVDNHTPQSVQIVENGPSAYWTRLPLRMILNDFAHDAIASTLSSDAGTYVCNSLFYRLLNWASNNSKKQIIAGFVSFPPVVATHDARHGLPLDSQIKAGQNIIREAVKYYMKPSSLSILLE
>NC_014644.1|WP_004575086.1|409842_410808_+|laccase-domain-containing-protein
MQETSVAGMPLAHEDAHGLPIPVTIPVPLGSRAHAVFTTRLGGISEGDFASLNLGGKAGDDAKAVFSNRCALQNTLKADLCLVSQVHGNNVFDADSIVDSWNTQYGFDATGFADSKVRIEADAQVSTACSLALGMFAADCLPVLLADSESGVIAAAHCGRKGLMAGVLDSTIEAMCEKGAECSNITAVLGPCICGDCYEVGEEIASDFERRYPQTATQTRFGGVGIDIAEAARIDLALAGVANVVDALPRVTAATQYLAEDEELSTVCDVDCEGGTLKSRLQALQNPMCTLENPLWYSHRRAGLAGKSHEGRLLALIVKDK
>NC_014644.1|WP_004115945.1|408930_409788_+|aldo/keto-reductase
MDRILGSFKTTSIGFGEMPLTIENNLGHDMGIETIHAALDAGCTHIDTAWAYYCSGGEEQTGEKLVREALESWNGDKSSILVATKVGHFRNFTDGRPTWGKDGKPEHLIAHAKESAMALGVDTIDLLYFHRPDPEVPYNESIEAMQQLLDEGVAREIGISNASVEQIDIARGILGEKLVAVQNQYSPVHLENEDTLQYCKQLGIAFVCWSPLGGFRHPYDEHLFDPFRKVADAHKVSYQQVVLAWELAKGNNVFVIPGAHRPATILDSLKAADLQLSDEELAYLG
>NC_014644.1|WP_004115946.1|406059_408804_+|polyribonucleotide-nucleotidyltransferase
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQNELKRIAAKETKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDMDDEEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAALQQAHEARATILEVINECIDCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQEETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGETFTGKVVKTTSFGAFVNLTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFENQESSAPAPRENRGRAPREDRDDRDDRRSDRRRAPRDDRDDRGDRDERPRRRNVRDDRDSRYDDRNDRNDRSDRSDRYEDRSSRRDDRRDNRYDNNDFEDRPRRRAPREDRYDDRDDRRDNRDDRHEDRSAHRNADRRGNDRNPRYAADDDHYDEYRASREERSERPRRRIRRDFDPFDED
>NC_014644.1|WP_004111957.1|405355_405625_+|30S-ribosomal-protein-S15
MALTAEDKKSIINEYATHEGDTGSPEVQVALLSKRIADLTDHLKEHKHDHHSRRGMMLMIGDRRRLLDYLKRVDINRYRSLIDRLGLRR
>NC_014644.1|WP_009994439.1|404529_405210_+|VTT-domain-containing-protein
MGFIHFILNLLKDPRSAIAGWIAIGTAPALGLIFLIVFIETGVVFFPFLPGDSLLFAAGFFAAPDSQTGKSSLPLMLLLAVVWIAPIVGDQCNYFIGHFFGRRIVESGKVKALTPERVAKTEKMIDKWGPLAVFLGRFFPFIRTFMPFISGISGMRWTRFTPFSILGGVVWSSLFTMLGYFFGNIPFVQKNFELVIVAILLISLVPTFIGLYKAHAANKAKKCLEK
>NC_014644.1|WP_004111977.1|420385_420967_+|30S-ribosome-binding-factor-RbfA
MAGTNPRAARIAALIHRVIASNMEAHLHDKRLANVTITEVRVTNDLQIAKVYWTQLGTVGKEQGERQRAAQALQQAKGRLRTLVGAKAGLRLTPQIQFVYDEVPSEAHEIEDILVAARKRDEELAKARENARYAGEEDPYKKPREDEDFDDSDDSDDFDDSDEYEDYENSENDFVEDKSPATDDLDDSAHLEL
>NC_014644.1|WP_013399447.1|421003_422206_+|tRNA-pseudouridine(55)-synthase-TruB
MSSSQTSSSGILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHDKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQTPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASISCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVTQTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAKLTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLETAEKSPATAGGSRAFSKLQEKNEKNINQIEAKPIVVFVQS
>NC_014644.1|WP_009993790.1|422295_423633_+|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MKVINIRPDANGMINWPTLSAQRKAIVTIGVFDGMHLGHRKVIERTVDLARKNNAFSVVIMFDPRPSVVHENPDLFDDFGDNAQIPVDSQALTSVRQRLRVLQQLDVDHVIIVRYSLAFAAKSYRFFLGQLVGKLGMRALVLGSDAALGARRAGNVHAIKELAQATGVFDLVVVDDFGPGDVRVPDPIVPEVPSEDGEPKDPADGMNKAEYRAWSKGMPNKKVRAWSSTNVRWMLANGRVRDARDVLGQPHRVEGIVVHGAERGREIGFPTVNLGERIDGYVPVDGVYAGWIVDLDADEASADNLHSSNIPSVGVLRKDELHLGVHSPWRWAAAISIGTKPTFAESNEGSSVKNVVSGDSGDIFESDSISDFGADSSTYPNDSENRVVEAYALTDKWQDLYGHRICIEFAQFLRPQHAFDSVETLKDAVRHDVEKVREITDAENR
>NC_014644.1|WP_162861258.1|423941_425006_+|3-deoxy-7-phosphoheptulonate-synthase
MINRRVLELEPLPTPAQVLGELPLSPYAQDIVAESRDEIRRCLNGDDDRLLVIVGPCSVHDPKAALDYASRLADLRAKLEGELLIVMRVYFEKPRTTVGWKGLINDPDIDGTHDIHKGLLLARRTLLGVLDAGLAAATEFLEPTSPQFIADAVSWGAIGARNTESQIHRQLASGLSMPVGFKNATDGSVTAAVNGCLAASQHHTFFGIDHLGRACAVQTLGNPDCHVVLRGSSKGPNYDAASVAAAVASVRLRLGADCVASNGVVIDCSHGNSGKDENRQIQVVRDIADRLAHGEKGIKGVMMESFLQGGNQDPAPLSELEYGKSITDRCISWEDTERLLNTLAQSVSSRRIKS
>NC_014644.1|WP_009993787.1|425769_426246_+|hypothetical-protein
MCESPAPDRNNLHQDKNVSSRALTIARYAIFALLLAGAFLLAFAWYRGTHSKGYTVVTCSALWLSVIVPFITLIVLCVFVRGCRLVVGSTICVLLIASFFVFIAFHDSIMGFLNVPSTNPWFEFTCSALLKIATASFVIMCCVSVFLIKRNSMHKIKG
>NC_014644.1|WP_004111987.1|426254_426956_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MPKFTKIAIIGAMEEEVTHIAGSLSNVKHNKAASLDVSCGVLECEDGGKIEVAATVGGMGLVNAAATAQYLIDTYKPQAVIFSGIAGNLNKNLHTNDVVLGKTLKYLDTDMRMINQWKPFTNEYHSDDYLLKTADSVLTKMGINHILGTIASGGYFVDTPEKVAEVIEATQADAVEMEGAAILHVAARNDVPALVVRAMSDNADTKYEEFHTFDISEYADTAAKMTVNIVRNL
>NC_014644.1|WP_009993784.1|427239_428421_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MRKNAVKNNAVKNKSIKLNTNLNIRAITAGLLASATLVSFAACGDNVPASNSQSSANTSAKIVGNFQGSGASSQQVAVEAWIAGFQSKNPGAKIAYNPTGSGAGVTTFMTGATAWAGSDKSLSDDELEKSKSVCANGTTAFDVPVYVSPIAVIFNLKGISDAGKHINMDASTIAKIFDGKITRWNDDAIKSQNPKLKLPDKPITVVHRSDKSGTTQNFLSYIKDVAPSDWSYNLSENWPNSVGQGAKGTSGVVSTIRMADGAIGYADFSQVGKLGTVAVKVGDSYNEISPEGGSITINDSKVDEDAAAKSKHRVVVKINHKTEEKGAYPIVLVSYDIVCGAYKDAATARFAKSWLSYVTSKDGQAAAQGAAGTAPLPEKLMGRINKSIQSIGK
>NC_014644.1|WP_004115907.1|428503_429490_+|phosphate-ABC-transporter-permease-subunit-PstC
MSSKQRTEISKDAHKSGHFAGGFAGGFADRLFKSVALLCGLLILMVLTAVALFLLFQALPIVGANKSQVSQVFLDFTGGKAHDFLSYVAPMVFGTVLMSALALLLAFFVSIGIALFISHYAPPKMVPLLSGVVDLLAAIPSVIYGLWGGLVLVPSIYPFWKFISHIFGWIPLFAGPAASPSRSAATVSVVLAVMILPIITSMARDIFQQAPRLQQEGALALGATKWEMIKLAVLPFAKSGIVSASMLGLGRALGETMAVLMILSPGFTFKFNILQASQNQTIAANIAAQYPEANGLGVSALIATGLVLFVISFAVNLIARKITGKASA
>NC_014644.1|WP_004111993.1|429486_430494_+|phosphate-ABC-transporter-permease-PstA
MMQNSESLQAGSVSASSESPKIDFNKFRPTRSRIASRKRKDAFMRVLIFLSFVVALIPLLSLLFTTIVNGIKRLNLDFLTHNMTYVVGGAATGTGGYGGILHAIIGTLEITFGAMLISIPIGIMCSVYLIEYARGSRLATLINLVVDVMSGIPSIVAGLFAFSSFTIFVGPGTINGFEGSVALSLLMLPTVVKSCQEMLKIVPNDLREAALALGVTKQRMITKIVLRTALPGIVSGCILAVARVVGETAPLLMAAGFIASTNFNLFDGQMTTLPVYVYQEYSKLSANCPANAPSSCVTTIPMERAWAAALALIVIVLLLNIVGRVVARVFSVKAK
>NC_014644.1|WP_004111995.1|430523_431303_+|phosphate-ABC-transporter-ATP-binding-protein
MGQRIDVKHLNIYYGDFLAVEDVNISIEPNKVTAFIGPSGCGKSTVLRTLDRMHEITPGARVEGQVLLEGRDLYGKDVDPVAVRRDVGMVFQRPNPFPTMSIRENVLAGVRLNNRHISKQDADDLVEWALRGANLWNEVKDRLDKPGIGLSGGQQQRLCIARAVAVHPQVLLMDEPCSALDPISTLAVEDLINELKRDYTIVIVTHNMQQAARVADYTAFFNLKAVGKPGHLEYFADTTTMFNNPRNTEAERYISGRFG

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Crispr_ID: NC_014644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014644_2

836407-838265

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTATTTCCCGCATACGCGGGGGTGATCC	PILER-CR
GTATTTCCCGCATACGCGGGGGTGATCC	CRISPRCasFinder
GTATTTCCCGCATACGCGGGGGTGATCC	CRT

30 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NC_014644_2

>merge|NC_014644|2|836407-838265|PILER-CR,CRISPRCasFinder,CRT
GTATTTCCCGCATACGCGGGGGTGATCCCCTTCACGTTCTTTTGCTTTACAAGTATCCTGCGTATTTCCCGCATACGCGGGGGTGATCCCGGCACGGTTAAGCCGTTTGATATGCCGCTCCCGTATTTCCCGCATACGCGGGGGTGATCCCTCATCATTGGCTACACTCTCTGGATGCTTTAAGTATTTCCCGCATACGCGGGGGTGATCCCCGTAAAGTTTGCATAATGCGGCAACCAGATGCGTATTTCCCGCATACGCGGGGGGTGATCCTGTGTTTTTACGAGGTTTTATACCTTCAAAAAGGTATTTCCCGCATACGCGGGGGTGATCCTCGTTAATGCGTGCTAAAAAGTTTTGTAAATACGTATTTCCCGCATACGCGGGGGTGATCCTTATAAGCTGTAATTATAGGTGTAATATCTTTAGTATTTCCCGCATACGCGGGGGTGATCCTGGTTTGACGGTTCAGAAACAGATGTTTATGTAGTATTTCCCGCATACGCGGGGGTGATCCTATCAATTTAAGAGCGAAAAGAAAAGTTTTTATGTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGCGTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGCGTATTTCCCGCATACGCGGGGGTGATCCCACTCTTGTAGATGCTGTGCTTGAGCGGCTTATGTATTTCCCGCATACGCGGGGGTGATCCGCGTCGTGCCGCGGCGTGCGATAGTGTCATCGAGTATTTCCCGCATACGCGGGGGTGATCCTTGTACTAGGTGGCGCAATCGATAGTTTTATTGGTATTTCCCGCATACGCGGGGGTGATCCTATGGCATTAAACGGCATTGACATATCATGGTAGTATTTCCCGCATACGCGGGGGTGATCCTATTTTCCTTATTTTGAGCTAATAATAAATTTAGTATTTCCCGCATACGCGGGGGTGATCCTAATCAAATTATTCGGATACTAAAAACCAAACCGTATTTCCCGCATACGCGGGGGTGATCCTCGTCATCACTCCATCCTTAAGCACAGGCTCAAGTATTTCCCGCATACGCGGGGGTGATCCTGAGCTTGTAAACGCTCTTGTAGATGCTGTGCTGTATTTCCCGCATACGCGGGGGTGATCCGTATGATGCATTGACGTGACATCTAAAGAACAAGTATTTCCCGCATACGCGGGGGTGATCCCTAACACGTTAGCAGATGTAGCCATTCGTGAACGTATTTCCCGCATACGCGGGGGTGATCCCAAACGTTCTTCATTGCTTGCATTGCAAAATTAGTATTTCCCGCATACGCGGGGGTGATCCCCCAATGGCTTCCTCATCTCTAGCACGCTGCGCGTATTTCCCGCATACGCGGGGGTGATCCCTTGTATTCTCAATCAGAGAATACTTTGAGTATGTATTTCCCGCATACGCGGGGGTGATCCCGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTTGTATTTCCCGCATACGCGGGGGTGATTCCACGCCCGAATTGGGTATACTAAGTGTGTCGTTGTATTTCCCGCATACGCGGGGGTGATCCTGTCAAGTGTACCATCTTTTAATTCTTGTGCTAGTATTTCCCGCATACGCGGGGGTGATCCCGTATCATACTTTCTGAGTTTTGTCCTTATTGTGTATTTCCCGCATACGCGGGGGTGATCCCGAGTTGAGCGGCAAAGTCGAACATGAAACACAGTATTTCCCGCATACGCGGGGGTGATCCTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACC

>NC_014644|2|2|836407-838204|PILER-CR
GTATTTCCCGCATACGCGGGGGTGATCC	CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC
GTATTTCCCGCATACGCGGGGGTGATCC	CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC
GTATTTCCCGCATACGCGGGGGTGATCC	CTCATCATTGGCTACACTCTCTGGATGCTTTAA
GTATTTCCCGCATACGCGGGGGTGATCC	CCGTAAAGTTTGCATAATGCGGCAACCAGATGC
GTATTTCCCGCATACGCGGGGGGTGATC	CTGTGTTTTTACGAGGTTTTATACCTTCAAAAAGGTATTT
CCCGCATACGCGGGGGTGATCCTCGTTA	ATGCGTGCTAAAAAGTTTTGTAAATACGTATTT
CCCGCATACGCGGGGGTGATCCTTATAA	GCTGTAATTATAGGTGTAATATCTTTAGTATTT
CCCGCATACGCGGGGGTGATCCTGGTTT	GACGGTTCAGAAACAGATGTTTATGTAGTATTT
CCCGCATACGCGGGGGTGATCCTATCAA	TTTAAGAGCGAAAAGAAAAGTTTTTATGTATTT
CCCGCATACGCGGGGGTGATCCCCGATG	CGCAATGAGTGATTATGATTTTAGAGCGTATTT
CCCGCATACGCGGGGGTGATCCCCGATG	CGCAATGAGTGATTATGATTTTAGAGCGTATTT
CCCGCATACGCGGGGGTGATCCCACTCT	TGTAGATGCTGTGCTTGAGCGGCTTATGTATTT
CCCGCATACGCGGGGGTGATCCGCGTCG	TGCCGCGGCGTGCGATAGTGTCATCGAGTATTT
CCCGCATACGCGGGGGTGATCCTTGTAC	TAGGTGGCGCAATCGATAGTTTTATTGGTATTT
CCCGCATACGCGGGGGTGATCCTATGGC	ATTAAACGGCATTGACATATCATGGTAGTATTT
CCCGCATACGCGGGGGTGATCCTATTTT	CCTTATTTTGAGCTAATAATAAATTTAGTATTT
CCCGCATACGCGGGGGTGATCCTAATCA	AATTATTCGGATACTAAAAACCAAACCGTATTT
CCCGCATACGCGGGGGTGATCCTCGTCA	TCACTCCATCCTTAAGCACAGGCTCAAGTATTT
CCCGCATACGCGGGGGTGATCCTGAGCT	TGTAAACGCTCTTGTAGATGCTGTGCTGTATTT
CCCGCATACGCGGGGGTGATCCGTATGA	TGCATTGACGTGACATCTAAAGAACAAGTATTT
CCCGCATACGCGGGGGTGATCCCTAACA	CGTTAGCAGATGTAGCCATTCGTGAACGTATTT
CCCGCATACGCGGGGGTGATCCCAAACG	TTCTTCATTGCTTGCATTGCAAAATTAGTATTT
CCCGCATACGCGGGGGTGATCCCCCAAT	GGCTTCCTCATCTCTAGCACGCTGCGCGTATTT
CCCGCATACGCGGGGGTGATCCCTTGTA	TTCTCAATCAGAGAATACTTTGAGTATGTATTT
CCCGCATACGCGGGGGTGATCCCGAAGC	CTGCGAAGTGTTCCTGCTGGAATGTTTGTATTT
CCCGCATACGCGGGGGTGATTCCACGCC	CGAATTGGGTATACTAAGTGTGTCGTTGTATTT
CCCGCATACGCGGGGGTGATCCTGTCAA	GTGTACCATCTTTTAATTCTTGTGCTAGTATTT
CCCGCATACGCGGGGGTGATCCCGTATC	ATACTTTCTGAGTTTTGTCCTTATTGTGTATTT
CCCGCATACGCGGGGGTGATCCCGAGTT	GAGCGGCAAAGTCGAACATGAAACACAGTATTT
CCCGCATACGCGGGGGTGATCC

>NC_014644|2|1|836407-838265|CRISPRCasFinder
GTATTTCCCGCATACGCGGGGGTGATCC	CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC
GTATTTCCCGCATACGCGGGGGTGATCC	CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC
GTATTTCCCGCATACGCGGGGGTGATCC	CTCATCATTGGCTACACTCTCTGGATGCTTTAA
GTATTTCCCGCATACGCGGGGGTGATCC	CCGTAAAGTTTGCATAATGCGGCAACCAGATGC
GTATTTCCCGCATACGCGGGGGGTGATC	CTGTGTTTTTACGAGGTTTTATACCTTCAAAAAG
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC
GTATTTCCCGCATACGCGGGGGTGATCC	TTATAAGCTGTAATTATAGGTGTAATATCTTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TGGTTTGACGGTTCAGAAACAGATGTTTATGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA
GTATTTCCCGCATACGCGGGGGTGATCC	TTGTACTAGGTGGCGCAATCGATAGTTTTATTG
GTATTTCCCGCATACGCGGGGGTGATCC	TATGGCATTAAACGGCATTGACATATCATGGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATTTTCCTTATTTTGAGCTAATAATAAATTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TAATCAAATTATTCGGATACTAAAAACCAAACC
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTCATCACTCCATCCTTAAGCACAGGCTCAA
GTATTTCCCGCATACGCGGGGGTGATCC	TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT
GTATTTCCCGCATACGCGGGGGTGATCC	GTATGATGCATTGACGTGACATCTAAAGAACAA
GTATTTCCCGCATACGCGGGGGTGATCC	CTAACACGTTAGCAGATGTAGCCATTCGTGAAC
GTATTTCCCGCATACGCGGGGGTGATCC	CAAACGTTCTTCATTGCTTGCATTGCAAAATTA
GTATTTCCCGCATACGCGGGGGTGATCC	CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC
GTATTTCCCGCATACGCGGGGGTGATCC	CTTGTATTCTCAATCAGAGAATACTTTGAGTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT
GTATTTCCCGCATACGCGGGGGTGATTC	CACGCCCGAATTGGGTATACTAAGTGTGTCGTT
GTATTTCCCGCATACGCGGGGGTGATCC	TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA
GTATTTCCCGCATACGCGGGGGTGATCC	CGTATCATACTTTCTGAGTTTTGTCCTTATTGT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAGTTGAGCGGCAAAGTCGAACATGAAACACA
GTATTTCCCGCATACGCGGGGGTGATCC	TAAGCACCCTAAAAACGCGGCGGGTATAACCAC
GTCTTTTCCGCATACGCTGGATAAAACC

>NC_014644|2|1|836407-838265|CRT
GTATTTCCCGCATACGCGGGGGTGATCC	CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC
GTATTTCCCGCATACGCGGGGGTGATCC	CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC
GTATTTCCCGCATACGCGGGGGTGATCC	CTCATCATTGGCTACACTCTCTGGATGCTTTAA
GTATTTCCCGCATACGCGGGGGTGATCC	CCGTAAAGTTTGCATAATGCGGCAACCAGATGC
GTATTTCCCGCATACGCGGGGGGTGATC	CTGTGTTTTTACGAGGTTTTATACCTTCAAAAAG
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC
GTATTTCCCGCATACGCGGGGGTGATCC	TTATAAGCTGTAATTATAGGTGTAATATCTTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TGGTTTGACGGTTCAGAAACAGATGTTTATGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA
GTATTTCCCGCATACGCGGGGGTGATCC	TTGTACTAGGTGGCGCAATCGATAGTTTTATTG
GTATTTCCCGCATACGCGGGGGTGATCC	TATGGCATTAAACGGCATTGACATATCATGGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATTTTCCTTATTTTGAGCTAATAATAAATTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TAATCAAATTATTCGGATACTAAAAACCAAACC
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTCATCACTCCATCCTTAAGCACAGGCTCAA
GTATTTCCCGCATACGCGGGGGTGATCC	TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT
GTATTTCCCGCATACGCGGGGGTGATCC	GTATGATGCATTGACGTGACATCTAAAGAACAA
GTATTTCCCGCATACGCGGGGGTGATCC	CTAACACGTTAGCAGATGTAGCCATTCGTGAAC
GTATTTCCCGCATACGCGGGGGTGATCC	CAAACGTTCTTCATTGCTTGCATTGCAAAATTA
GTATTTCCCGCATACGCGGGGGTGATCC	CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC
GTATTTCCCGCATACGCGGGGGTGATCC	CTTGTATTCTCAATCAGAGAATACTTTGAGTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT
GTATTTCCCGCATACGCGGGGGTGATTC	CACGCCCGAATTGGGTATACTAAGTGTGTCGTT
GTATTTCCCGCATACGCGGGGGTGATCC	TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA
GTATTTCCCGCATACGCGGGGGTGATCC	CGTATCATACTTTCTGAGTTTTGTCCTTATTGT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAGTTGAGCGGCAAAGTCGAACATGAAACACA
GTATTTCCCGCATACGCGGGGGTGATCC	TAAGCACCCTAAAAACGCGGCGGGTATAACCAC
GTCTTTTCCGCATACGCTGGATAAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014644.1\|WP_004112674.1\|833603_834251_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_014644.1\|WP_009994024.1\|829178_830849_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_014644.1\|WP_009994023.1\|830871_831486_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_014644.1\|WP_004112662.1\|825183_825480_+\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_004112655.1\|818695_821185_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NC_014644.1\|WP_004138505.1\|831580_832669_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_014644.1\|WP_004111910.1\|838759_838921_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_013399551.1\|821325_823506_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NC_014644.1\|WP_009994022.1\|832727_833603_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_014644.1\|WP_004112676.1\|834276_835218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_014644.1\|WP_032836391.1\|839047_839362_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_009993726.1\|841869_842913_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NC_014644.1\|WP_004111911.1\|838419_838749_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_004111893.1\|846282_847182_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_014644.1\|WP_004111894.1\|845335_846280_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_014644.1\|WP_013399558.1\|844533_845346_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_014644.1\|WP_004112679.1\|835219_836299_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_014644.1\|WP_009993728.1\|841168_841870_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NC_014644.1\|WP_004115343.1\|840136_841069_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_014644.1\|WP_004115334.1\|843254_844439_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|376518

Protein	Function_ID	Function_description	E-value
NC_014644.1\|WP_004112674.1\|833603_834251_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.98175e-73
NC_014644.1\|WP_009994024.1\|829178_830849_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.10239e-102
NC_014644.1\|WP_009994023.1\|830871_831486_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.90469e-35
NC_014644.1\|WP_004112655.1\|818695_821185_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_014644.1\|WP_004138505.1\|831580_832669_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.86395e-158
NC_014644.1\|WP_013399551.1\|821325_823506_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	5.78613e-77
NC_014644.1\|WP_009994022.1\|832727_833603_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.54593e-44
NC_014644.1\|WP_004115343.1\|840136_841069_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.2068e-33
NC_014644.1\|WP_009993726.1\|841869_842913_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.43853e-50
NC_014644.1\|WP_004111893.1\|846282_847182_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	5.00817e-23
NC_014644.1\|WP_004111894.1\|845335_846280_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.66379e-30
NC_014644.1\|WP_013399558.1\|844533_845346_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.04479e-76
NC_014644.1\|WP_004112679.1\|835219_836299_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.81974e-38
NC_014644.1\|WP_009993728.1\|841168_841870_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.89143e-45
NC_014644.1\|WP_004112676.1\|834276_835218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.61611e-129
NC_014644.1\|WP_004115334.1\|843254_844439_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	8.14555e-65

>NC_014644.1|WP_004112679.1|835219_836299_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLTVITMTNCPLSLRGDLTKWMQEIATGVYVGNFNSRVREELWKRIEDSVGNGAVTMSFSSRNEIGYDFKTIHSHREVVYSDGLPLVRIPTVDTLENDIKHGFSDAAHFHNARKFSNVRRKSINTTSNKIENNLTTESISYLSYDNVSQNAKFTTNNEEITCTDYWKDFIGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGKLPLLGYNVSFDIGFFNSALFSLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYNISESVPHRALLDARLTARLVLNLTELLKFLS
>NC_014644.1|WP_004112676.1|834276_835218_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKKFGAKKAEIPELPRISDRVSFIYVEHAKINRLDSAVTVFDANGTIRVPAAMIGVLLLGPGTEITHRAMELLGDVGASIVWVGEHGVRNYAHGRALSRSSRLLEKQAKLVTNNRSRLSVARKMYQMRFPNENVSSYTMQQLRGREGARVRHVYREMSNQYNVQWNGRDYKIDDFESGTVVNQALSVGNVCLYGLVHSIISALGLAPGLGFVHTGHDLSLVYDIADLYKAELTIPASFEVASQCESEDDIEQLMRLKMRDCFANCNIMSRIVNDIQNLLEIPIDEQITVDVIHLWDDKELLVDSGINYSEVN
>NC_014644.1|WP_004112674.1|833603_834251_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSYLSRVEIDYKKPSSLRDLKSVGAFHNWVEQSFPDEWENHERSRKLWRVDVLHGKHYLLIVSDSEPDLQRLEMYGVAGTASSKNYDKFLGSLMNGMRMQFRVTLNPVVSISDTAETRTTRGRVVPHVTYDQQMNFLLNRAQKLGFSLNENEFAIVERGYSLFTKSEKPIRLSKAVYQGILTISDAKIMRKTLLEGIGKKKAYGFGMMTVIPLDN
>NC_014644.1|WP_009994022.1|832727_833603_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKSLLLKFSGPLQSWGTDSHFETRHTDYYPSKSAVVGMIAAAFGYRRSADCDEAIAKLNDLDFAVRIDQQGNLLRDYHIAAKYKSNGDFEKNYVTNRYYLEDAIFLVAIGSDNEQLIYSINDALRSPYFQSSLGRRSLPPTADFILGVEDCGVIQALLTHEWLANKWSKKRFNTFRLSDSSESADESCNEVFISLYADSDLVDKAAAELVKDDTSTYKIQGSVRRLRKDFVNSFSNKERKFGFRYESKVEIPIKRILHNNSDSEGISSDSKHVKSTGDFIAEHDAFSGLES
>NC_014644.1|WP_004138505.1|831580_832669_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNAHLFLDIQAIQTVPPCNINRDDAGSPKTAQYGGVTRTRISSQCWKHSMREYFKEHSGDSNVGIRSKNIVKYVADKIITLKPELSEQEALDLADKTLNTAGVKTKTDKGETVPTAKALFFLGETQANSLAQAAINNVTDKKQLQEILRDNPPIDIALFGRMLADDPSLNEDASSQVAHAISTHAVRTEFDYYTAVDDLSADDNAGAGMLGTIEYNSSTLYRYANVAVHEFSHQLSDNKESTINALRLFIEAFANAMPTGKVNTFANQTLPQMLVVTLRDDRPVNLVSAFEDPVKSKDGYVSKSIEKLSQEYEKVQKFVHKPLASFYVTMDSSNEEIKLGVEEQSMQQLLDDFSSKVSEFLQ
>NC_014644.1|WP_009994023.1|830871_831486_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAENKSKSVEVSNAVSKIINQFLNSSDIASRRTMLAQLRHTIGKPLSQSIEIWPWILNNVPESFIDKYGEVNYQLRAVINTLQIYALYEQGVAEKSSYKDLNKSEDSENEKSYNNMGTALRTLRSDEGVRGAMDRRFSVMITANDYESFYYYLRQLVRLLKSRTKENQQSIDYSKLARDLYLLQFEDSEKVRLSWAQEYYRLSK
>NC_014644.1|WP_009994024.1|829178_830849_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSRFNLLDEPWISVIVDEKGHNKLVSITDVFKHASEYKALAGDMKTQDFALLRVLLAAIHTVFSRYDIQGNSREFDSGEDSEDDFNEETMDIWREVWNSKKFPDAVFKYLEQWHDHFYLFDDKYPFFQVLKQDIDSKKLGGKSPSEISGKNINRLISESNNKIAVFSPKDNVDNNKSSLTEPQLARWIITLQSYAGLADKTMFGTEKYKASKGWLFDLGGIEIIGANLFETLMLNCVLVGDVQSPEKKQKPCWEYSGTENIENSFYETFIDNISQLYTRWSRAIYINPDISVDKPISVSIVKLPDINHKNSFIEPMTVWQYNKEGENKDKYTPRKHRTEEAMWRSFGLLTSQELYDGSVKNHKPGIMEWLNKIKHDITGSSISLQAISMKDDGNATSWVPTDEICDTLYIDEVVVTDNADDGWVYRINNEVEYTRSAIGFIYKQFLLDICEIRNRNKDDATKYSAKYISQAYFLVDQPFREWLANIKPKDSMNERCTQWRNTLHNILIDEAKGMLENATLRDFTGRPSDQSEKESTKNIVTAYNIFTSRLKKLSGK
>NC_014644.1|WP_004112662.1|825183_825480_+|hypothetical-protein
MNMQKIYYDTAEKLRPYAEPYMDKLCKEAASNATCAGEPYEALADYLSFAWEHQDTPRKLIIEAYNLIDDDYLDSYNEMADKLGIPRRQHSADYDEDE
>NC_014644.1|WP_013399551.1|821325_823506_-|DUF2075-domain-containing-protein
MMKAIVPPKSIIVNLPYKVFKDNELEHSINENLKYKRSDLDNQTIQVLKHYLLKFPTVYIVHKKEYERYTVYVGETNNIEERTKQHLNADTKIRDDWEKLSEGEVKQYIIANEHFNKSLTLDVENRFMQYLLSVDSINEVTNRRTNPQGEYYPEEEFERIFSGIWVQLHDMDPDLFPEEGIIRDSALFKASPFHKLTSEQKTIERKVIDIVNEALKSKNKCDSDSSTLILLEGDAGTGKTVLLSDLFYKICNKLSKIKNQLRQYSYDSVEEENEEDSDYEYKQFSTINNRKTACIIVNHKEQVNVYNQIATKLRLQKNNDELVMLPSQFINRFSEQTEQGRGIIDRPKRCCDVALIDEAHLLNTQANQAYSGSNMLSDILCRSRVVIAAFDPNQILQSNQRWNSEDLEKLLGTYCKDKKSFGNSANDCGALSLNDSISVNVRRFILENQMRMRANKNVLEWIKNFIYNGCIGTLPVCSNSEIKNADSNNADKPFDFKVFDSPIKLFKAIKSKSEEKASGCDGHGLSRIVATYDWEYKNNKNNPTAVNGTWNVDLHCDSNGQWYMGLGEYADASSSELEILEREGKIFSHPWNYQLSSLDSSKHSHSIKETKKSWAEQPHTINEIGSTFTVQGFDLNYAGVIIGPSVQYRNGKVVFCPENSRNDKATNKRHTKDLSAKKKITLDYSIDNLKNELNVLLKRGVNGLYIFAVDTELEKALLDAQRNSFI
>NC_014644.1|WP_004112655.1|818695_821185_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDNTRKQIKEMIGTGTVSPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGLPEDGQKGDLANAGGVQDKRNQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIVAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGELQTIGATTTDEYRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSARYIQDRNLPDKAIDLIDEAGARLRIKRLTEPPELKELDSKISKLSEKKDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVNMVVDEDVIASVVSNTTGIPVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGKTELAKTLAQFLFDDDDALIRVDMSEFAEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKSANTGFSLGNNADASYQRMKDQVNSELKRQFRPEFLNRLDDTIVFRQLTEPEVRQIVDLDVKRLNDRLFERHMTLELTDAAKNLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILLGDLTDGERVEVDAEGEGLLGEFIFRGIKFDVES
>NC_014644.1|WP_004111911.1|838419_838749_-|hypothetical-protein
MLDENGQTVLVSLHDIARLLGVGYESMRQYLVRSRRAALDGQDASSLRGLIPLPTHSVGALTAKPAWDYDIIRDWAARRPHRPVELPSSWQALQEAVSKAAKAESNNQQ
>NC_014644.1|WP_004111910.1|838759_838921_-|hypothetical-protein
MSKTRVLGIISAICAITAATNVVLQVPFAGIGFTLAAGIAGLSAGLTGSSKEK
>NC_014644.1|WP_032836391.1|839047_839362_-|hypothetical-protein
MCFAPIIKVLMFYYGRYETRVGSHTIRQYLVITRKKQKAGTLTIADFPLPDALAGIVQEAPLWNYETIRMYAANRSRNPIVLPNSAADAAELIRLLVAEGTARR
>NC_014644.1|WP_004115343.1|840136_841069_-|LysR-family-transcriptional-regulator
MTLLQLKYIVKIVECGSMNEASHELYVSQPALSSSVKELERELGIEIFTRSSQGIALTVDGAEFLTYARQVLDQADLLEERYNSTKPRKQLCSVATQHYMFAVEAFVDMIRSIDSNEYEFSLRETRTKNIINQVTSMRADLGLLYLSDYNKDVIGKMLREKHLEFHPLFRAKLHVFISRNNPLAGHKKLTLEDLRPYPFIQYEQGEDGSFFFTEEAVWPQHPPKKINVTDRATILNFIIGLNGFTICTGIDNGDLNNEKIVTIPLDCEETMLVGWIKNERTNLSPAAIAYLSQLESVLIKHGYQVISRAK
>NC_014644.1|WP_009993728.1|841168_841870_-|HAD-family-phosphatase
MKEEKMKNTNINTNINTNENVESVEIHDVMFDYCKVLLEWNCRNCLQKQFPDLVDTICPNGTFGKDDLAGFYEFEDRMDGGELLKDLLPEYERRFGKELSNAFQWYCAHYDQVLTQMMPGMVDLLHDLRKAGYGVWGLTNWSKETFPLALRKFPELNTLLQGTIISGVEKLHKPQPEIFELAMSRFGLKPQTTVFFDDKPVNIDGAHNVGMHGFVFTTTEQARKDLASLGVRL
>NC_014644.1|WP_009993726.1|841869_842913_-|NAD(P)H-hydrate-dehydratase
MSELLNIEAKDVSKCLKKPKPFYNKYSRGVLGLVTGSNEYPGAAILSASAASHANIGMVRYAGPLRAQNLVLQTSPEVVASEQLTGKIDAITVGSGIPDADHCNTEASANQRKYIASILAQYAKENNNSKEQSISQKDNLPPLCVDAGALDLLPKHVCTKVVLTPHTGELSSLFTRYDLNISAQQISSNPTHYAQKAADLTGATVLVKGATTAVASPSELHSPIYIAKCAPSWLATAGSGDVLAGILGALLAQRERKENNKNCAENYAENYANYAENENYAFIAASAAVIHGISASLASKINSENNYTQLAQDIVESNDASTSDHPIVASDIINALPYIIGLLMNLN
>NC_014644.1|WP_004115334.1|843254_844439_+|zinc-ABC-transporter-substrate-binding-protein
MKTARIFATAATAALLTVGLCACGSTAKTADQKTNGNQVNVVATTTQICDYVTQIASTADAKSGLSLNKTDSQGKKSVIGAPQDKAKSTINLTCLLAPNASAHEHEMTPAQSKALSKADLMLVSGVDLEHFLDQAVKATGFKGTMGVTSGILTADEIKDSKAEAAKEKNLPYKIDRGVEKVHAEKWPFPPEEGEKEPEFQYDPHIWTSTKNTMIQVKNIGNFLGKALPESKSIFDEHVEKFVKSLTDLDSWATEALNSVPQEHRVLFTSHDAFGYFSRDYNVKFIGAALSDFNSQQDATADHIKEAAEAVKKSGAVAIFAENSNNSKSIKAVAAAAGVKAIIGDDALYGDSLGPVGSAGETYIGSIVHNVQTLVKAWDGKVPDLPESVKTALKK
>NC_014644.1|WP_013399558.1|844533_845346_+|metal-ABC-transporter-ATP-binding-protein
MKDCDLAYGYKTVVTGLNGSVEAGEALALIGPNGSGKTTFLQAIIGIVRVSHGSLTMPKTVSIGYVPQQVDLDLTFPITARQVVAMGLSRQTGFLGLLKKSQKKSVEDALNHVGLLNRADVRFGDLSGGQRQRILLARAIVARPTLILLDEPFNGLDEPNRKELLNIMKSAKEDGISFVVSTHDLVIADAICEKALLLAGRQVAFGPLRKVMTKENISLAYGGSMPAASAGITLNQLANKDDSLNAASVTSTFSDSSISGTALGDESNAS
>NC_014644.1|WP_004111894.1|845335_846280_+|metal-ABC-transporter-permease
MLAELVESLRKILEPIPGFDFIASAPYIFRPFCLLIVLAIASGIVGVFVNLRCAEFNAEALVHGIFPGIVVGALYGGIGQIIPGASICAIFLVAALVWASRSQKINESIIATVLTTFFALGIVISLKKGDMSGQLEALMFGRLLDVTDDRMTQAMLICLFAIALLVLTWKKQIVVAFDRASAPLMGVNTLLVDIVLNVAIASVVVSASSAVGVLLVIGYLVIPGASARLVSRTVGRMAFVGVAVGIFGVLLGMYAMNLELDHPVSPQAAVALSICAMFVVVLILRFLYRVTYALVFSKKFSKKKKSSAIDGGGK
>NC_014644.1|WP_004111893.1|846282_847182_+|metal-ABC-transporter-permease
MVSIWQIIALPIVEAIAVGALCGFVGSLALLNQRIFFTESITHAAFPGAVIGVVVTSVYTIDQNVLSIGLFIGAALACIVLSFMMHVLSKLKGISSQASAGITLTVGFASGYFLNKWFAPLPLRIEGFLTGSLLNCTPADVIFAIIAFALALGLWSFNSANLIHCSFDSTNYKALGGRSGLMQGIVLALIIITVSVIIPAVGTVVSVSLIAAPAAALKSRMRSINKFVFACVLSSIFIALLGLALAVILRLSAGGTIAICAGCFYLVVKLSESIFLKIHEIYSGFCKKSLLKSRSVVLE

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Crispr_ID: NC_014644_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014644_3

1124196-1124273

Orphan

Consensus_repeat	Method
TTGAGCTACAAAACCCGTCAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014644_3

>merge|NC_014644|3|1124196-1124273|CRISPRCasFinder
TTGAGCTACAAAACCCGTCAATCTTTTCCGCTTTTTGTTGCTCTACACACCATTTTGAGCTACAAAACCCGTCAACTA

>NC_014644|3|2|1124196-1124273|CRISPRCasFinder
TTGAGCTACAAAACCCGTCAATCT	TTTCCGCTTTTTGTTGCTCTACACACCATT
TTGAGCTACAAAACCCGTCAACTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014644.1\|WP_048653126.1\|1122307_1123153_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_014644.1\|WP_004114934.1\|1132605_1134513_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NC_014644.1\|WP_009993754.1\|1114383_1116486_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_014644.1\|WP_013399624.1\|1119355_1119901_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NC_014644.1\|WP_009994176.1\|1131103_1132594_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NC_014644.1\|WP_009993755.1\|1112954_1114205_+\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|369267
NC_014644.1\|WP_004113500.1\|1136662_1137589_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270225
NC_014644.1\|WP_009994174.1\|1128077_1129841_-\|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl\|CDD\|200477
NC_014644.1\|WP_009993756.1\|1109402_1112528_-\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|212101
NC_014644.1\|WP_004113516.1\|1127389_1127983_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	unknown	unknown	gnl\|CDD\|237411
NC_014644.1\|WP_004113518.1\|1126438_1127374_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NC_014644.1\|WP_013399623.1\|1117873_1119229_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NC_014644.1\|WP_004113527.1\|1119961_1120462_-\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NC_014644.1\|WP_004113501.1\|1135509_1136502_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_014644.1\|WP_013399627.1\|1123161_1124130_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_014644.1\|WP_004113534.1\|1116545_1117829_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NC_014644.1\|WP_009994175.1\|1130293_1131064_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NC_014644.1\|WP_004113520.1\|1124337_1126020_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173859
NC_014644.1\|WP_013399629.1\|1134621_1135443_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_014644.1\|WP_013399625.1\|1120644_1122318_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048

Protein	Function_ID	Function_description	E-value
NC_014644.1\|WP_048653126.1\|1122307_1123153_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.27882e-51
NC_014644.1\|WP_004114934.1\|1132605_1134513_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NC_014644.1\|WP_009993754.1\|1114383_1116486_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_014644.1\|WP_013399627.1\|1123161_1124130_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.22989e-73
NC_014644.1\|WP_009994176.1\|1131103_1132594_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.84331e-50
NC_014644.1\|WP_009993755.1\|1112954_1114205_+\|AGE-family-epimerase/isomerase	gnl\|CDD\|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	2.60179e-121
NC_014644.1\|WP_013399625.1\|1120644_1122318_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	2.25205e-149
NC_014644.1\|WP_009994174.1\|1128077_1129841_-\|glycoside-hydrolase-family-13-protein	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_014644.1\|WP_009993756.1\|1109402_1112528_-\|alpha-mannosidase	gnl\|CDD\|212101	cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38). The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.	7.66748e-148
NC_014644.1\|WP_004113500.1\|1136662_1137589_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.20485e-77
NC_014644.1\|WP_004113516.1\|1127389_1127983_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	gnl\|CDD\|237411	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT.	7.22002e-101
NC_014644.1\|WP_004113518.1\|1126438_1127374_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NC_014644.1\|WP_013399623.1\|1117873_1119229_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.12678e-134
NC_014644.1\|WP_004113527.1\|1119961_1120462_-\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	2.48112e-91
NC_014644.1\|WP_004113501.1\|1135509_1136502_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.3236e-68
NC_014644.1\|WP_004113534.1\|1116545_1117829_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NC_014644.1\|WP_009994175.1\|1130293_1131064_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	2.41751e-131
NC_014644.1\|WP_013399629.1\|1134621_1135443_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.91344e-146
NC_014644.1\|WP_004113520.1\|1124337_1126020_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173859	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.46197e-177

>NC_014644.1|WP_013399627.1|1123161_1124130_-|ABC-transporter-permease
MKRMILRRITLFFVALLFISAIVFLALRVLPGDVAQVMAGLNAPDGKVEQLRHDLGLNKPLFVQYLEWIFGVFRGDFGVSMLTGRSVASTIAMRASITFPLIFLGLLIALAIGIPLGCLQVLHSGKASQVVARFCAITAGSVPALWGGMILIMIFGKGIGLVELFPTQGFPTDGWRDFGSAFLSLILPALTVGIIVGSGFMRYTAASLEQISNSDIALQAMACGMTKKQMIWRVGLRLALPQLVSVIGLTFAHMIMGVMVIENLFSLPGMGMGLVRDVGLRDLISVQGNLFMLSALFLLVGFAIDALHRLLDSRLSQDSSGE
>NC_014644.1|WP_048653126.1|1122307_1123153_-|ABC-transporter-permease
MIKFLSRIWRGIIGKFVCIILCLWIFVAALSFVWTPYSLLETNGYQVWQKPSLNHWLGTDGTGADMLSWLMAGSRVEILLVISTIVIASVVGFVILSFTICRVQKIRSVSIMAVDALISIPTVLIALMLAVPLGASVLVIMLACGFGYGLNLARILRPSAVLVLKSNYVDCAISNGASRSYVLLKHVLPNILPIASVQLSLSAGTVILAESGLTYLGVGVPSGVPSWGRVLSTSVTLIHVYPLAALWPGLVVTLTVLALNLFGDVLRSVTNPANRESKNES
>NC_014644.1|WP_013399625.1|1120644_1122318_-|ABC-transporter-ATP-binding-protein
MSLDIKGLSLSIGSSRILSDVSLNVKDGERVGLVGSSGSGKSMLLRAAIGLVPSNCKITGSCHVGNAQTVGANDSALANIRGKYAGVVFQQADRALNPVMSVSEQIALPLRLHYNLDEDDIQNRVKVMLEKVGLGANILNKRTFELSGGQMQRVGIATALITCPKLILADEPTTALDSVTQKDVVNMLTSLVDNMGASMLFVTHDFSVLSRAATRCYVLDSGRLVDSARVGELLENPKVRSTKQLVLAARALSLSKNDLSLDNNDLSLDCKSDLNKNDSSKDDCIFKAKNVHVVLGSSKTRVEALKGVDFNLRVGESLALIGGSGSGKTTLIRSLLGLQEISEGRIEYCGKVVETAKNAKKSSLKDSAYVNMRRQCSLVFQHPFAALDPRWTVRKSVSEPLEIWRKNMSSDSNTVDSNTVDSHVIDSKVDDVLNLVGLNPNVFGKRYPCELSGGQAQCVAIARALINNPRVLVADEPMSAIDVAERTRILDAFNVIRANRPNMACVFVSHDLGMIQHLASSVVVLKDGVVVESGNVSQILTNPKHSYTRELIDAATL
>NC_014644.1|WP_004113527.1|1119961_1120462_-|S-ribosylhomocysteine-lyase
MSENQNNQPTPRPESFELDHTKVKAPYVRYIDTQKGPNGDVISNYDIRLTQPNQEAIPTGALHTIEHTIAVLLRQRIEGYIDCSPFGCRTGFHLLTWGTHSTEDVARALKESLEFIAYKATWEDVPATTIESCGNYRDHSLFGARQWCKDILDKGISSDPFERKIV
>NC_014644.1|WP_013399624.1|1119355_1119901_-|GNAT-family-N-acetyltransferase
MCEIRLRKATLSDLKDIENIYERARVFMANNGNPHQWGDRFPLTSSVIEDIRLNRFNLLVDTDPDFGNERILAQFALCEGLDEVYAKIDGAWLDDVLPYVTIHRLASSGVKPKMARECLKWAKLNYSNVRIDTHPDNLIMQKVILREGFSKCGLVVIPDRAHSATRIAYQWLRSHNHVIRY
>NC_014644.1|WP_013399623.1|1117873_1119229_-|alanine-racemase
MCKNSSIQAILQENYARALSTYPGQVIVDLKALRDNMRTLIERVSKDLQPGQKSPAVMGVVKADAYGHGLIPSALAALAGGATWLGTAQPYEALRLRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALAAKSVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPDVPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADGILRAASGYDMQGSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKEGDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLYKNAYEVLPKKDIKMLDEKSLI
>NC_014644.1|WP_004113534.1|1116545_1117829_-|deoxyguanosinetriphosphate-triphosphohydrolase
MCNDVITSDNEVVGEYSLHDTERWASEPHHTRARTPFERDRARIIHSSALRRLGAKSQVLVAGSDDFARTRLTHTLEVAQIGRQIASMLGADPDVVDCACLAHDLGHPPFGHNGERALAQIASNIGGFEGNAQTLRLLTRLEPKVFRENGASAGVNLTRASLDAAVKYPWGFDEAKAHDKGERDLKFCVYPDDREVFDWLKSGSPRELKPMECQIMDLSDDIAYSVHDIEDAIVTGAFNTELVWDSSVADQVVQEAHNWYGSQWDADSLLAAFKRLRALNMFPDSYDGSRRSLAHLKNITSALIGRFASSVERATREKYGSGALIRYRANVVIPPETSYEIIVLKSLAVHFIIQPREREFYRREQKILTDLVEVFMSKSPRAHDAMEAVFISDWNTCSSEGERLRVAIDQVASLTDGSATALHAALC
>NC_014644.1|WP_009993754.1|1114383_1116486_-|DNA-primase
MAGMIVKEDVERVRAAADLYDIVSATVTLKPSGTGTFVGLCPFHDEKTPSFSVRPGLGVWHCFGCGAGGDVFKYVEQKENIDFREAVELLADRYHVEVHYDQSQAGKDSAHAGSKRARLIEANEEAQRFFVSQINSKEAAPARSLLAGRNFTQAQCERFGCGYAPNSWDTLVRYLSNKGFTRQELLDAGLARQGQRGIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTPDTVLYRKTQVLYGIDIAKSNIVKKRQVVIVEGYTDVMACHLAGVDTAVATCGTAFGAEHAKIIRRLIADDSLGAIQLVGPVKVEGQKVSSRIVFTFDGDAAGQKAALHAFGLDSAFLTQTFVAVADNNLDPCDLRIQRGDEAVRSLIARANPLYDFVIDTVIRKFDTSFATGQMGAVKAVAPLVAQIRDRSLLDLYTRKAVRNIGVDLDVMRREVESNRRRLHVIDDDAYSKSYSSIVSADSRVFDQRSQSMNEAAIKTAMLRSAYKNQSYYKVDDSVFMCEQQFMAVLMQSPLAFNSQLFAQLTLNNFITPVFRTLFQAFVAAGGLPTSNVSQGLWLHIITKAAGPMLEGAINELSVMPLPLSLSKGLSSASSLNSSAAYDYSGESAKGGPSDFLRVPSEEEQKYANELLIKLLDVGFMRKIGAFKVRMSKLPDGQEKLTLLGQITKMESARKDLQSQIL
>NC_014644.1|WP_009993755.1|1112954_1114205_+|AGE-family-epimerase/isomerase
MQDFETTKYTFDTQANRIFMAEQTKQLLDFAKNFPTPIGGSGWLNTDGTLDKTRGVQTWITARMTHVYSIGEMLGYKEANQLVERGLDGLLGPLHDNEHGGWYPQVSWNKEPEKDKICYTHAFVILAASSALLAGHERAKQLLEDALKVFDKYFWNNEIGLTVDTWDTSFNKLDSYRGLNANMHTTEAFLAVADSTGDEKYRERAKRIISHVINWASNNNWRIPEHFNDQWQADLEYNKDKKDDQFKPYGATPGHGIEWSRLILQWAYSYYKEDCKQRREALNAAENLFNQALKDGWNADGQPGIVYTTDWNGKPIVHDRMHWTLAEAINTSSTLYRITKNKQYATWYKEFCKYLDHSVIDHSNGSWFHQLDDKNNVLNTVWTGKSDAYHAFQSTLIPFIDTTCSIASAIYREQLD
>NC_014644.1|WP_009993756.1|1109402_1112528_-|alpha-mannosidase
MFLLPEQQLNRCTRVMQQRLYPHINTVLLHCKIRAYEIAGEPISSNEFFSKLKRNDIVFHSFNVPSVWGTTWGTTWFEISGSIDLSKVKGCKVELNVDLGWIENLFPGFQAEGLVYNVDGRVIKAVNPCNHWVPLIDEHNNRSISIDENGNFTLYLEAADNPFVEGPTPFSPTDLGECATGNTECQYMLKYVDVTVFNRNIFDYYMDLETVSSLMRELNDDNPRYWKLAKALQRSLNAYDEHDSSTVQNARNMLTNVLSQPAAASSLRHIAVGHAHIDSAWQWPVRETHRKVARTISNVLALMDEDPDFTYAMSSAQQYEWLENEHPDLFERMKNRIKEGRFIPVGGMWVESDVIMPCGESLIRQMTFGKRYFKEHLGVDPHGIWLPDSFGYTGALPQLARRAGFDWFLTQKISWNDTTKFPHHSFLWEGIDGSRILAHFPPSNTYASSVSMHELVYSQRNFLDKDLSDHAILLYGFGDGGGGPTREMTARIRRDRNLEGAPRVDFGTPDELFEKIRKDIVDDSNGDTPVFKGELYLELHRKTLTSQQDMKRYCRMEESLLRVAEYLVVLARVYAPEYRFNNDELTRIWKTLLLNQFHDILPGSAIAWVHRQAREEYARDISCLRKIISDIANAIVKANSTVNAVNARENVKLLTYTGKNEVAWNLYQCSESCKNNTTTVKHKNDGGVILNNGVLSVTIERDGTVSSVEDIKFNRELIPSGYRMAQYEILKDEPYQWDAWDIERDAFMRNRKIDDSSIVDVKELLSGGVSVEILACKKDVKIQTSIILEPCVKRLDFHAQVDWNAKEQFLKVDMPTSVCSDKAQYECQYGLVERPIVKNTRSDDAKFESCTHRFVRIEDSSYAVAVANSSTYGADTAPIGDYSSSYGTMLRLSLLSAPLYPDPNTDQGKHEFTWSFIADANMDSVLSTADFLNSPIIDMLPEVDPLFTIHRNSGLIALDWVKLADDCSGDIILRIHEPSGGYANGQIKLNKILRYSSIEEVDLMEMPVLHGMPIALHNNNDALNVELRPFQLCSLRIRIAS
>NC_014644.1|WP_004113520.1|1124337_1126020_-|ABC-transporter-substrate-binding-protein
MDNKEPKDGAYNNDATDKFYGQENAEQSQFSSSTDASLNAASKRGYKTNKRGLGKFWLVSVAIVVIAVVSAIIATFTGPQKNPASQTSSTQVSNKTVSIGLKLAPTNLDIRNQSGSSLEQLLIGNVYEGLVARNTKNQVVPSLAKSWEISKDGLKYTFHMRKGVVFSNKHRLTAKDAEWSFNELVAKKYRGSNMVGKVESAKAKDDYTFEIKLKEPNAKLLWALCSRAGLVFDKLANYDAKTQAVGSGPYLVEKFVPNDRVVLKANPCYKGINKPRTSKVVVRYFVDDVAAVDALSSGAVQALAPISGQLAKTFKADAKRYVVKAGNSTDKFVLAMNMNGERTKDKRVRQAIRYAIDHKQIIASRGGTDALLGGPIPSLDPGYEDLTNIYTHDVKRAKSLMKEAGFSESNPLHLSLTYPNIYGTQLGDQLRSQLKKIGIDLKVNIVEFTTWLHDVYNNKNYDLSMVDHNESHDFGQWADPKYYYGYNNKQVQDLYAKAMLCANTKESNKLLAKAARIVSKDAPADWLLNYKVVTAKVKNLEGMPFDINQVLLPLYNLRLS
>NC_014644.1|WP_004113518.1|1126438_1127374_+|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MAENLNTTVTVNESSDPQNNGSQDRTALNRQLAQMLKGGVIMDVTTPEQARIAEDSGACAVMALERIPADIRAAGGVSRMSDPAMIHGIQEAVSIPVMAKCRIGHFVEAQVLEAIEIDYIDESEVLSPADDVYHINKRDFAVPFVCGAKDLGEALRRINEGASMIRTKGEPGTGDVIQAVRHMRMMNSAIRKLTSMREDELFEEAKTLRVPFDLVKYVAQNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKSGDPAKRAAAIVKAVTNYKDAKMIAKLSENLGEAMVGINEQEIKLLMANRGE
>NC_014644.1|WP_004113516.1|1127389_1127983_+|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT
MANSPINTNNCSHTVAVLAVQGAFLEHRLMLEKLGAHVIELRQARDLEQSFDRLVLPGGESTVQSKLLKEQNMLEPLRERIASGMPVLGTCAGLILLAKNVEGNEVSGFGTLDVTVKRNAYGRQLGSFHYESEFGNLGKVPMTFIRAPYIVQVGSNAETLATVDGNVVAARQGNQIGTAFHPELDEDTRIHQLFLSL
>NC_014644.1|WP_009994174.1|1128077_1129841_-|glycoside-hydrolase-family-13-protein
MINRQAILHRPLSQYAYSTAEYCLTIRLRAAKNNLCSCVLHYGNRVDLTPLDQFCTLKMEKIASDDYFDYYEANISSDLDRVCYYFEMQDADERLYLYADTIATDFPEDRTEVYQFPFIRREEISDVPNWLKEAVVYNIFPDSFADSKRGISCEAKDYFDEKTGQTLHTRLGGTIRGIIENLDYIEDLGFNCLYLNPIFKAAEYHRYDLLDYYHVCPNLGTDDDFRELVSEVHNRGMHIIIDGVFNHSSWYFFAFDDVVKNGENSRYKDWFYGLKFPVKRPEDGKRPSYTCFAYERKMPKLNTSNPEVRDYFMDVCRYWLEDFDVDGWRLDVANEVDKDFWRAFRSVAKKTKKDSVLIAEIWENSERWLQGDMFDSTMNYEFRKVCRDFFAFGKINAREFNSRFVDMLLRYPFPIVQGQLNLLDSHDVSRFRSLCAQSSSEACDFSTADKRFRLAELCLLTSVGAPSVFYGDELGVIGFEECDYRAPMPWSNPVSDNRDLFRELIKLRKNNDCFIHGNFRVLDYDERGKFVFARETDSKRVVVALNAFNESNDSFSALPDCKPIISYNYDAQNQSLGAFGYAIFEVK
>NC_014644.1|WP_009994175.1|1130293_1131064_+|type-III-pantothenate-kinase
MLLAVDIGNTNIVLGFLENGKIVGTYRMTTKANHTSDEYGIMITQFLNLSGFSVNDVEDVIVASVVPKVMHSFRASIVKFLQIDPMIVGPGVKTGVNIRIDEPRSLGADCLADCVGAFYEYGGPVLVIDFGTATTYNYVDKSGAITCGLICTGISAAAAALWDNTAQLPEVEISRPKSVLTKSTRPAMQAGLYYSFLGGIERTIEQFKIEINEPFKVVATGGLGRLFEKDVETIDYYDPNLIFKGMYEIYRRTIGC
>NC_014644.1|WP_009994176.1|1131103_1132594_-|sugar-ABC-transporter-substrate-binding-protein
MCARSPQKSRKQDFGCFVMRNINRNINRVFVRNIKRVISAITCVFIVAFCASCGSVDSRTKITVWSWEPSMKRIAADFEKQNPDIRVSVKDTSGYNNLNSAIQDGYGMPDVAQLEYHALPQYAVSGQLLDITNRVQGTQTFYTPGTWSSVQLGGRVYGLPMDSGPLAWFYNQDVFNQAGVDVTQIHTWKDYLHAARKLKNIGVYIAADSGDASFYNAMIWLAGGRPFITSHDGKTVTVRLSKDKGTKDFTKFWQSMIDEDLVDTRLATWTPAWKSAVGSGSVASVFAGAWMTSLLMHDIPGGAGLWRVARVPTMNGNNDNAQMGGSALSVLQSSRKPEAAMRFVNFVCHDQTGIKERVLSGAFPADVVTLRDKSFLNKTMVRDSRGIDVPYFGGQQFNRIFADAANHVDTGYKYLPFEVYSRSDFRFTVGLAYDWNRKSRARLTVQSMIDAGIKQDDGKDFQLPDDPGPKISLKDGINLWKKDLKEYGYNQGFVVR
>NC_014644.1|WP_004114934.1|1132605_1134513_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYAGFGTVCSKPLEVCLNGLERLEYRGYDSSGVALAAPGMDSICVRKKAGRLAVLRKDIEADPMPEASVAIGHTRWATNGAPCDLNAHPHVSADGKIALIHNGIIENAISLKEQMQKEGIEFSSQTDTEVAAKALGKIANQIIEETGKPDLFEAIRRVAKILKGAFTLLAVDVRQPNIVAAVRHDSPLVVGVSNNEYFLGSDVAAFVQYTDKVLEVGQDQAVLIGDIEGNKKAQLRLTDFDGNEIENPSCFTVDWDASAVEKGGWDSFMDKEIHEDPHAVADTLRGRFDAKGNIILDEVRISQDILRSIDKIIVVACGTASYAGLVAKYAIEHWVRVPVEVELAHEFRYRDPILTHRTLVVAISQSGETMDTLMALRHAREQGSRVLAICNTQGSSIPRESDAVLYTHAGPEIAVASTKAFVAQIVAAYMLGLYLAQVKGTMYRDEIQQIVSQLKEMPDKIQNVLDTQADSIMQAAKKTIDAKSFLFLGRHVGYPVALEGALKLKEIAYTFTEGFAAGELKHGPIALVDKGEPVVVIVPSSRGRDVLHAKVISGIEEVKARGAFTIAVAEDGDPDAERYADIVFWRPKCPTLLSPLVDVVALQLFAMNMAKLKGYDVDKPRNLAKSVTVE
>NC_014644.1|WP_013399629.1|1134621_1135443_-|amino-acid-ABC-transporter-ATP-binding-protein
MTDILTVDTQSQNVTKSDTPAVVIKDLHKSFGNLQVLKGVDMTVNPGSVTVILGPSGSGKSTLLRLINQLEKITSGKITIYGERIGVKTVIHNGKEALQALNDNEIAAQRAKLGMVFQRFNLFPHMTAIENVMESPVHVLHMDKTAARDLAIKELERVGMADRLDHYPSQLSGGQQQRVAIARALAMKPEIMLFDEPTSALDPELVGEVLNVMRDLANDGMTMIVVTHEIGFAREVADQVVFMDGGKVVECGTSGIIDCPQTERFKDFLHHVL
>NC_014644.1|WP_004113501.1|1135509_1136502_-|amino-acid-ABC-transporter-permease
MFNNASKKLSQNSDGDRILPVKKPGPIIAGIIVAIIACSLLYSIVTNPRFEWNVVGIYLISDNVLTGIAWTLILTFLSMIIAIVLAIGLAMMRKSVNPVLRAVSWFFIWFFRGTPVYTQLVFWGMFAVLVPKLSMGIPFTSVEFFSIDSNVVMTSLNAAVIGLSLNEAAYLSEIVRAGLEAVDAGQVEAAQALGMGRSLTMRRVVLPQAMRIIVPPLGNETIGMLKTTSLVLAVPFTLELQFATNAVANRIYKPIPLLIVASIWYLIITSILMVFQVMLEKHFGKGFEAKDIVNNAQINSNAAKRGDNAIKANSDAVKGRNNATMLGFNA
>NC_014644.1|WP_004113500.1|1136662_1137589_-|ABC-transporter-substrate-binding-protein
MLKSNKIFKSIKPIAAIATLALIGCTCACGPADSKAADPDVARSYDVSKVQKDDEIAKLVPESVAKTGELTVGVNVSYAPAEFFAADGKTPVGYEIDFSKALAKLMGLKAKIMHAQFDSIIPAIGSKYNVGISGFTVNAERMKSVDFVTYANAGLSFEVRKGNPTKVDPKNLCGKKVTLETGTVGEPIMEEAKKQCKANNDKPLEIMSFKEQTDATTALLSGRADVMYADTPVAGYAAIKNNGKLEILESSNDAEPMGAAVKKGDAKMLKLIKAAIDKLMKNGVYNDILKKWGVENVAIKEAQVNPEV

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Crispr_ID: NC_014644_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014644_4

1470299-1470405

Orphan

Consensus_repeat	Method
TAAAGTCCAGTGGACTTTATGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014644_4

>merge|NC_014644|4|1470299-1470405|CRISPRCasFinder
TAAAGTCCAGTGGACTTTATGTGCCAAATCAGCCGAGCGGCTACTAATAGCCGCGAGGAATAGAGCGCTGAGCCGATCAAACGTAAAGTCCAGTGGACTTTACGTGC

>NC_014644|4|3|1470299-1470405|CRISPRCasFinder
TAAAGTCCAGTGGACTTTATGTGC	CAAATCAGCCGAGCGGCTACTAATAGCCGCGAGGAATAGAGCGCTGAGCCGATCAAACG
TAAAGTCCAGTGGACTTTACGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014644.1\|WP_164928106.1\|1456688_1464719_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|275090
NC_014644.1\|WP_013399735.1\|1445555_1446227_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NC_014644.1\|WP_009994361.1\|1487192_1488743_-\|AAA-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|224041
NC_014644.1\|WP_013399733.1\|1442569_1445059_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_013399737.1\|1466217_1468074_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl\|CDD\|380024
NC_014644.1\|WP_004114457.1\|1486570_1486939_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_014644.1\|WP_009994359.1\|1488851_1490600_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_014644.1\|WP_013399740.1\|1470632_1474652_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NC_014644.1\|WP_004114476.1\|1479971_1480919_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_014644.1\|WP_009993582.1\|1468674_1470120_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_014644.1\|WP_004114467.1\|1484956_1485640_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_014644.1\|WP_004573794.1\|1481380_1482118_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NC_014644.1\|WP_009993840.1\|1439125_1442473_-\|GA-module-containing-protein	unknown	unknown	gnl\|CDD\|223496
NC_014644.1\|WP_009993950.1\|1446314_1450487_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|224000
NC_014644.1\|WP_013399741.1\|1474739_1478306_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NC_014644.1\|WP_009993870.1\|1464863_1466012_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NC_014644.1\|WP_013399742.1\|1478505_1479222_-\|hypothetical-protein	unknown	unknown	unknown
NC_014644.1\|WP_009993949.1\|1450479_1455396_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_014644.1\|WP_004116653.1\|1479276_1479960_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NC_014644.1\|WP_004138616.1\|1455814_1456576_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014644.1\|WP_164928106.1\|1456688_1464719_-\|cell-wall-binding-protein	gnl\|CDD\|275090	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain. Staphylococcal protein Ebh (extracellular matrix-binding protein homolog) is a giant protein, sometimes over 10,000 amino acids long as reported. This model describes a non-repetitive amino-terminal domain of about 2400 amino acids.	1.85947e-14
NC_014644.1\|WP_013399735.1\|1445555_1446227_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	3.68118e-05
NC_014644.1\|WP_009994361.1\|1487192_1488743_-\|AAA-associated-domain-containing-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	4.2432e-109
NC_014644.1\|WP_013399737.1\|1466217_1468074_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	6.06578e-06
NC_014644.1\|WP_004114457.1\|1486570_1486939_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	3.87235e-62
NC_014644.1\|WP_009994359.1\|1488851_1490600_-\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	1.39664e-122
NC_014644.1\|WP_013399740.1\|1470632_1474652_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NC_014644.1\|WP_004114476.1\|1479971_1480919_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.58973e-17
NC_014644.1\|WP_013399741.1\|1474739_1478306_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NC_014644.1\|WP_004114467.1\|1484956_1485640_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.60849e-72
NC_014644.1\|WP_004573794.1\|1481380_1482118_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.59897e-20
NC_014644.1\|WP_009993840.1\|1439125_1442473_-\|GA-module-containing-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	9.27005e-08
NC_014644.1\|WP_009993950.1\|1446314_1450487_-\|ATP-dependent-helicase	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	1.16868e-42
NC_014644.1\|WP_009993582.1\|1468674_1470120_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.93549e-27
NC_014644.1\|WP_009993949.1\|1450479_1455396_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.00212e-06
NC_014644.1\|WP_004116653.1\|1479276_1479960_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.0752e-68
NC_014644.1\|WP_009993870.1\|1464863_1466012_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.88256e-74

>NC_014644.1|WP_009993582.1|1468674_1470120_+|ATP-binding-protein
MIYNLNQSTSIATYTERKFPRKIYSQMLNWKNSSNGKTALLIEGPRRVGKSTIVKEFAQNEYESYILVDFYTASPEVKQLFEDLSDLNYIFLQLQLTYKTSLKERKSCIIFDEVQLCPKARQAIKALVNDGRYDYIETGSLISIHKNVKNILIPSEERKLKMHPMDYEEFKWALGDNTTIPLLKKLYDSKKPIGQAACRKMLRDFRLYMLVGGMPQAVESYIETNDFSVVDRVKRDILSLYEDDFRKIDPTGKISAIFDSIPAQLMSNTSRYHVSSVLAGNRANTVLEQLAQLEDSGTVLISHHTNDPNSGMSQHKDLSKFKLFLADTGLFVTLAFKDKSFTSNDIYMRLLNDKLQANLGYVYENIVAQTLSTHGHKLYYHTFMDGDARLIADDTNVEIDNHDNRHSKCNNRNYEVDFLIADKNKIVPIEVKSSGYKTHASLDSFARKFSSRIAREILIYTKDYQHNGMLEYIPIVMTEFL
>NC_014644.1|WP_013399737.1|1466217_1468074_-|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MRLNTNSLKRTVAVLAAVCTLGTCCIAGSIAYAQGEAKGVDTANINQGKKSATSIIIHKYQGPETSERSDGTVKTLKDKKPVKGVKFTLWRVKKKNANSSDDIDLSKSSDWKKIKKLEDLVATTTASKKTASEFMTGANAEFEKYTDTGDGVNKANGKTVETGDSGEAKFENLAMGLYYIEETDTSGAQLQEDGTWKKVSITKRVSPFFVTTPLPNPKDKANPWIYAVNVYPKNDTSKERPTKTVSSLSRKDLTKDNETTITWKIAIPLTAPKNGNKYEKIGFKDKLETGLTYDKISSAKLVTYTDSGQKDTSANDVPLDATTHYTATNTNGLVSFSLTSTESTGGLKKAYDEYSKHTTDKKVVKLEVELVTKVADTVKDIANVANTYVDDNKTGNGDGNDPCTPTKKDGDCGGDDIPNDTAHFGTLTVNKVTEEIGANGDKKKLPLNDAKFDVYEVTDTSATANDTFTVSDGKIKKNNQDAGTKLNNVSLKTKVKTDGGAKTEGTDSVRLFVYNSKETNPAVTTKLYCVVETEAPAGYLLDSTPKCVALKADTAADATKNNTKEIENKKATGLDKILAALPMTGARGLVLLTAFGIVGLGGTLFYIITRRRKEQEEA
>NC_014644.1|WP_009993870.1|1464863_1466012_-|class-C-sortase
MLRFLFLNRNVAVKHKKRDKRKWRFSKSSIVPALLLTASFASLLYPHAAMWLSQYHMSEVAAEYAKLITHAIPAPHEQLARAREYNRKLSVGAIYEANTNIPTSHGETSDVSQNYWDQLKANDDGLMARLRIKKIDLDLPVYHGTQDDTLLKGLGHLRGTSLPVGGLGTRSVITGHRGLASAEMFTRLDEIDKGDSFTVEVFDEILTYKVIEKIVVNPDETKKIAAVPGKDLVTLITCTPLGINTQRILVTGERVIPTPAADKSLLGKKPDVPRFPWWLVGSIASLSVVGGYIYWAGLPIVKKKKKKNDKQNGDDRNNGDDHSDANGDDQTNDTLWLGIYGDQNKQMYRDSEEVRRISQESFESIIDGFAQGKRPKASKLKN
>NC_014644.1|WP_164928106.1|1456688_1464719_-|cell-wall-binding-protein
MRSIWTVLLSVVVWIGRLAQQATKAALIFLISVAMWLPMCLTANTAVAADSGTAANAAISGNSGKKHESNKSGDKPKSAAKPNAADNADISAPSQPPVFIDGQNNAFAKLKNGVSVNNNLANNAAKGDASDKGLIDSAMMSAAKGMAKQGASYTSFGMDRSNEIFNNTERSSNGDKMGYDRSRMEFRPGCNRNYARSECITDDGDETGHRASKGADMERGDNPWREDSGYDQPQGIYTNNDPNFTPYPRGTYLQKRIRNLAYLKNKNGVDSLNRIQLDDVHDYIFMKRTPKRDGNGYIWDVLVNMGARIHGAAKALTYFVVPKDQSLDTSNGQYDQYVERLHFDAKNRGCAKDWVNPNGFCIDEGTRKEPLNDGETLDKAWYRIGNSNAIENVGVFEGGTQRDRDDSNRKLGLCDSYGFDCYHSGNYGFPSEGEHKAGTRLPPDGTQKFNDTYIKLIDNLFSELRGTDKEPRAKIFALRNQFDESKSPYSYHIHYTTSNNGKYGKLSTSYYGAGSYYGDTWHGPLSRYGLGDPYSRNPKYSLSNYRIGSGHTTYEYTTLYQQWYGIPNLVDINVPHYSFLRGTHLGPFTSNNGQLLAHTKNIDVTSLLFQPTRQEVCDKDTEAQCGNNTVWAKGQLSLLPKYNASENKYARGNRWWRKPLDPNTNINTKDSKFGIHDLTVQYWNDKLQMGSAKKVKYDIIGQADVFRPLQTQEWQDNPKYRSSKDSLGKAADYVNYLDNKGKIYEFAHALNPRLYMPDSHSSNNLENYSKYSDSDDSVYYGSIKDGKIPGDAHGLEYPLNDSYLYSQDSGANAAIKDRAIYSVEWTNADGSLKKSNTLKDAETKVAVRVPVVNVVDPCKGDDDKAADKAADKSAQADAAAKNKDSQECKLRPLNDTKRYIWKLYDAPSGKTVDQKLTGDEKAKYAKLAKDYFSNPVKEEYATPTNPNDENRIMLQFGEQPEVKPVYVAAKYAKITYWDESTGVLPLVFTHVDDEKPTIDVKVSINGGEPRSVPENGMKISVGSRIRFLVTGHDDKHVYMGTKEKVKDNNNKTDIQSTSEQFKATAFNKYDQSKPVGVDSATDQSGYVTTSETNGPELKSNDSGVKEFTFHAWDDAGNKVQKKIKLIITGDEFTAPNVRWQKQPNGRYVGKVNLLTKSKQVAVLAVRIWKRGEPKQKPVGETDTFRIFSDCPNKSCHGIMLTRQAGEDWQQLNDDKPDHSYFTNFMPYEKDITFDPKTGEITIPEHLAEIGSRIYAGVGNNASQLQTTLNASSDPLPLDMTWPDDGMVQVNPYELNPSEKQGLIDRIKQKNPRLFQYRKDEIGWSKDETKTLGGTSDKYSCKDNTKQYKICLSVTPDTKNTAQGKSGSEKTFKVVKATGTGNDTKDDQNQETVLDPKQKKITRFVNIRADYDWSYGSGKINGRNTDDGFKWYGRDENSSQYLVYRFNINQGDNKNFNTNEALSLFQGTKKSRWLRNQIQPSLYPLNTNDADSTNKTTIEKLWGGYNRMPNRGDGIGYARKVNNARGEWANIVDLVNYSNLGGGQTIFTNNITDKDNFVQPQGYVMPGGEDYNQQDSGANIGAAILKKSGNKYPLHAQLYIFNGNPWRELEARDEGDKDHTPNVINVWFVPVDKNKPWISVKDANDPSKKLLGECNPTKTNANSCGTVTTIDMNKTDITKQSGLFNVVDLLALDDDFNVADKTTHVSKALKDTLSIDIEAEGATDPKTKKAPRVRFVTGGNTNKELLRGFIEKWRGNDSKNSPTFKMIAQVTDDSGNKSDEAVVGKFKFNWTVAKAPVVRAYDGNHYNDLSGSGVWLHDWEGASAPNYSNKVSVISGNNATRLVVYFARAKKAAAKTGNTVSLRNAGANAIYSRSADATTGINDDSDISESLALCRAKTGDRWSLCDGYMFPEGLSTNDLNQTAFGGDKTAILFPSGFLAPGSVVRARNRTGSYGPWSDMPGVKSENLDELANDANETTSVNNDLKKLSGSENVSQAQNGANSAKEEDMRGVQSVDSLSSKRSSVCRLESKAPKVWSEPSDCVFFPVVVNKKVVQVHPLLLNDSEKRAVNHVLRNGNAGGKWLDSGDNDSLDNATNTRSGVSVDNSNASLDDDDDTLAANESKVTWKRGNYIAPQKQDDGRNNYSNVGSEQDSFILTRGWRRRTVTPEPRRNIVTRFAKLRSDSNSAADYTITWDKKKPYIGERSSDPGFELVGAPGHQSLVYRYNASTKDKRIDLNQLQNALTLKPNVPSGMSEDEFKKIQPSLRVVSGTDKKNGEGSKEVTVQLPDGKTRVDKFGNGSGFFTLNDEYINIPDLVLGNGNYGGGLNVSNTNGMNYSTLGNNYLNMSPQDITVNKWCEGGDTANPNCTSVNSESFNLEKVLGGHKNIETADDIKGTSKKAIAPVYALSLSNGWAMNSLKNTYGYNAQTHFKNVAAAPTLLPVYVVPVDVIKPKAESIGSLKSSTMAKPYEVSANDIKFTFTGNPDTNGKVGGKELLVDASDDFDSRDVVEKNLQVCVRWMNNNKPQDKDCTPILKRDNSGNASVDSDKLQQMLVTHGNTAVYAVYAQTKDKSDNKSVGYDESKETAPIIGYIKITGINVSPIPLPFTGGNAAITYTFLFGILMALFIASGAFGRRGWLASVLSGNGFSGELTYSKHCNVSAEPLRCRRLFGLIYKNRH
>NC_014644.1|WP_004138616.1|1455814_1456576_-|hypothetical-protein
MSETLVLARKDYVTRTMIRIIAIVSSIYGMAMSWDSMALTYFTNLSNLMICVALLGSLILDTRSALKSKSDEQSERAGAWVDAKPNAWYIFKFMMTISIAVTFTLYLCFLAPTNKLGFVGAYMNNGCSSLCVHFITPLLAIFDFVLFDYKYKSSRAHVYFATIPPLTYVAYAVCLSEFAGVRWGEHAMAAPYNFLNYKAPAGWFGFAPNTFNSTTLGVGVVYLLAIFTLIFIGIGIAFLAIKNARATRLLSQQ
>NC_014644.1|WP_009993949.1|1450479_1455396_-|PD-(D/E)XK-nuclease-family-protein
MCTEDSALDAVQSLLDGSLKNTSERHTNVLLVFGAPNSGKSSFALNALLCGLRANWKNTQDSKYDEAVQLLLKYAIRTDFAIAAAQNRATAARMSNYVISNLGVSYQSRPVGTLSAFAFSLISARNKLFGMPSPKLLNGAEQDAILREIVRMHVNHVLQGDSGDCKICSLFNDYFSGEYSKSLQDGDYKSHDSWIYVISQLQNSDNLMDSFDSTDYRNAHNAYNAQNTQDLPINSAFIHQLRDMLARLDEMGIVSESAELQILNSLNFQSHLQSGSSSDLLATLQADLQSSSIANRLRVQWNLAFALRSQYADCVRKKYPNAFRLDSSKLLANGVQILNEIFKSLYDDNTEESSVACDYSADSSKDFSKELFALKCSLPRLLVVDDFHDVTLAGLAFLESLSSLGVRIVLTANPDESVQSFRGSYPDYVVEAAQHGVMQAAVLKICDYRIDGVAESYNDPNDPNDSNDYVDSSNTSDLLKQNSRSIPLSLFSSRVSLSIPSLMPTPTPIARRAWKMANIQGAFPIEKIESNSQETENSSVSGDLYRTAREEMDCVIWQIKRAHLDHKIPWKNMAVIAHDNATVRAFGERLRKDGVPVRYSSVTRALREEPFIKALFALIELAQFSQNSVDNLAKDVSLGTRTISSIARFVKSRIKTIMDSPLIDSDNYNCADLSAVEALMRSIVSLSDMVTSKENSPLSVLIRQWDLLQNQLLNKTDSKNDGLDANFNFDNRIFDSNPNPNSTRFSVDSCYLLIIKALIDSCAIDKSMDCDDFSVDSCDSDLLDKSPADKSPANQTQSDQTTEIFSVLQKMRPNSVHLRTLMRVFKITSKLSKILKQDLAKIQNSETNEASYILGQAWNLCNCAKKWQIQALKNNDEGRLANDRLDAAMRLFEYANSFNYIDSRADYYESSVAGDYYAAAPTITQFIDQVRQMEIEADSLASVAPAPDSVTLTTPSGSVGSRWDYVWIPAVQQRVWPNTAARSTMFGSETLVNMVLNNRIFGSVNLKSNNSKKSSLLDEYANPTGICVNDRQAIFTGEQRSFLMAITRANRHLFISAVNSDDCVPSDFLYYYLPEIYWRNADGSSEYTDFCEDFAVMDADPRGLVASARTQIARAIYESENSHNLDENPTVKDALTALNLLKNNGVDSANPENWDFIRKNYGSKTEEKSIENESKSNLVTLSPSMVDSLWSCPVCCLLERKFAGPTRGGTAAQFGTLIHETARWASQDEHLDNEYLREKYPQLQAFAAIKNNKVSEFPDFDFSFESISALQKKAIEDVANTMIEHYYSICPSDSNISDVKDRYRFIKNDLNVRRALYTIAQYFVGSLTGSNYPIMAKKDEDGVVTDILPALERSKSAKPTIADVDLGNLEHAYCECNINATFGFDDILNAYNRASKTQTSLEDLYSIMGFLVGGWQNGASSDLRVRIQGRIDRMEIRKLNDNTEQIRLIDYKTGKVPKTQQVFNDLQLICYQLGIVFCNENVEDVKQLLKFKHTKIARSALFHVVYKDSPAQDNGVAENICQPSLFDADGALSTKGLISRYRYADDNRLYELPDIDAQNPADGVSQNAWSDFVNLPMRTKWSLMMISRVFFAASAVKSTSFVVEPKADHKNHCRCLDVCPGCAGKVDTVYEMIEGKNE
>NC_014644.1|WP_009993950.1|1446314_1450487_-|ATP-dependent-helicase
MNNNNVNAVKSTPNSAPSLEQKNVIEAPINQDVLIVAGAGSGKTYTMTRRVIHLIKSKVPPESILGLTFTNKAAAELLSRVSAEVSASGANGAKSFLKPEVMTYDAFFQSIVRRYGLLVGFNQNTMPLSDAGAMEIIKSIIGKYLDNPQNHNKNLNKLYDFDTLCSDVMKLCAEISCSMIGVDAQGNTCSSVPQAVQKIREWNNEFAEHLKNVIGNKKVESPLPAKSPAIPKYKKVKKTAGMSAEDVTKTSSEKFKQACKKYEKYWDDSCLQLCVNLYNSCVKRDILLDLVLQFDAEKKRVNMAQFSDFTIAAYYLVTHFPSICAQYRNQYSQVLLDEYQDTSTTQAMLINTLFHAENDAENDAENGGDNDGDFAASKRTHVMAVGDPFQAIYSFRGASTGAFCKFEQDFNINKQNKYSLTVTRRNSLFILKVANALTEPMRGENGDNSTQNASRRFSSIDDREVQVETLKPKEDASNGTIAALFMPSQAEEIDAVVRFAKKIVEKYGENPLEPQLAILFRSKANMPKYAEKLESAGIRTSIVGYSSLIEKPAVKDVLSLLKVVQDHSDSNSLMRLLATPRFALSTDDLGALAAIANSANTEYLYNIYSSAGLLEADLPKSQWDSAVRNLRNKANSGEISGQVINIYGGVYLADLIMRDFSTKNDQWVNQMQQKLSIGGFDAVKRLSKILHNVEGIQRNSLTNVMQAAVQALNVDIDTAVGSALKYKDFSNQIMLDDMRSVLDSLNAIVETYIQEMGEWQDVSLRGLISWIDSAKNLDSQSGSSVSSSSQTEPAQVVLMTVHQSKGLQWPAVAVVGLNEGAFPSNQGDSLKVDDNGQASARIPIEFGASVPCALRVDANILPHFPHTVTRAEAMHPEKAMQSLDSVQKIFDEIKPDRIKALCDFAEAVKEVDSCDSSDSGDFLSEETRRVYNAYKSQQNVDSMPFTQSEERGIQLHMDERHLMYVALTRAKFAALLTGSATSGDSAQSGRKRSASVFLNESINAIKNLNGAIKVQRCDSNEENKTESKESEEYEEQDVFGFIAGDDAQEFAAEFSKIAPQSDSSSLEPTLKWPCTLSSTIEKSLIESAKLVENCDSDLESVYDSSINTNPKSLLYKAKIFIQDADLTSQNDCDYSLEELAEKVNKISSGSRLNVTSLQKISKIAQNAKTSVYNNLLACIRPIPSIPSIDANLGTKFHAWAQQFVDSATPSESCECYEWKNIVKHGISLEKTPENRQKVIDDFNQSCKDSDSQSCALNQWKQRLIESRWAKRVPLAAEMPILMQIDNTEFANRIINGTLDAVFAGGLDASDTTKLYTIVDWKTGKRPKSAEDIRLKLEQLDWYRMLLARATNVDLRCIDATLYYVSEARAENREIHALCKTRDEILSEASF
>NC_014644.1|WP_013399735.1|1445555_1446227_-|GNAT-family-N-acetyltransferase
MTVEFRPVKINDIDAIIEEYERTWGIANAVGADASRNLSRRFVLHYLEPSTFGTVATINGKFMGLLLARVYGDKVLFKQVKKMLEEQEAKMAIKGDSSHAKALDSAIGMGQIERKLEAMSHINDLTQAELELFIVSPDARGHGVGGGLWKRTMQHLRSRGVNRYFLHTDTACDVSFYDYHGLRRDATWAKKDHEKYANRVKDLVEDLYIYSGEPFVNRTKRFD
>NC_014644.1|WP_013399733.1|1442569_1445059_-|hypothetical-protein
MSKKIRVVKHYSGVNSGVGADSQPVLSKSVCAAMLTGAMVLGGGVFVSSPAYADGYVDGTGNNIYYGYKTDASYTEARFHIEVDYYDTLEHAQAGKDEGKDPLGKFVRVHYLSNCAKKDGAADDWRFRPMWWYGVPKGLKNVQNITYTRVEKLTNQRGNQPFVPTGSSQFTFTDTNGYGVVSKKTYPTPKQWKSISNFYFDEQNVLANKGWKQLLGLNGGSYDNAGNTEGQWGDYQKETDGLQGIFVDWESAGQRFYDMTYVGEMTDDAWQKRDENPLRFAAGVYRFAGNWHYAVGQKHNTPKIADHLKLVYPEVTKVKDPSNLQDAEQKAIKEKITKANENTKYFKELVADNGVVVNKDGSATITFKDKTTRTMPASLLVSKDETDKDKYKPVMPERTPVVNLKNLTSDEKTKIRQAIIDANGGSSPNEFLKHVKQTNSQYEIRVQEDGSAKVTYADGSELTIPSTDLVLQGPKISDWAPYVVPDAIEVENLSKLTDTEKKQVTDAFDKANADLDVYIAAKKDDKTPVSFDKDFKNAIITWADGSTTEIPSWQFLKQKAAEQTPTPKPPTPKPAEEKKTFTVDLPDAPAQVKFDPFDKHATVAPGLITTLQNQLKGRTAKDANDPSKSVTITSATISIADGTVTFKADGYEDKVYPIGIFYKKEVTGTGTQNPTQQTPTSKTDTDPNNNKNTYKYFVTKTQINESKVSDVKPQEAAKALKQFVKDNYTGWTEQELASVTSNVAVGKNWTAKAGTTNLEPYNNGNGRVTSISVNSDNGLTVTGYQYADQDDANIDVSTETPLFIISADDLYAPNSGSQTPTDNTVEKLK
>NC_014644.1|WP_009993840.1|1439125_1442473_-|GA-module-containing-protein
MNNEKALRELIKKIADYQKPKPVEYTYNFEKLTLDHEGDLTDDDYKKIVVEQFLKKNYTTTDWSKLANAYSKSATVLSGNNANTYNLTPAAGTSGLNIYTGDKQAGGVTSVGIDSSGDLVVRGWKAGSTDSHAEELIRIKKADLFTPKPKDQTSTPSADDLKKFKEQAKELINRNPKLTDKQKEDYKKQIENATTKEQIQNILKQANDQAGKNNVKPEDIKKKEKEEKEKRENEQKEKDKKEREKKQEEQTTKDKKSANDTIDGLSDLTQDEKDKLKEKLNGKSGDTSKSGAKTPEEVQQIVNEAQARNAARKAIKDELPFLDHGTGAEGKTDTTHADDAALNELLGTKSGKDSTLTDLETALAKTNPAATAEEIKNALDTAKRQNAINEENAKNSGLAKLDALLQQLTDAENGLNETQKEAVKQKVEAAKTAINGAKDTVNKATKPSDIKTAVDGVKIEDALKEINTQVTNAQQNNKQQQENENKDALANEKKEQIARINASNLSDADKQKAIDDINNAKKLGDPTGIADRALKAKKIADALAAIDKLGHLNNAQKQAYKDIINGTAAKNHVDDKGKDTGVDDIDDALANAINTDNAMARLEELKVIADKFAKGDAYKNSNDANKKKAFDGASTAAGAVLDKAKGDPKDADQVNELYKDLLKAMQDLDNTVKGAGVKTDALAAEIDSDKNLKPSETDPKTPGDSVYNTSSKDKKEAFDKALKDAEAALQTANSDNEDAKKPTSTPLTPDQEAQKQKAVDDALDKLIKARLALDGVNTKPLQDEIDKNNKVKNSDKYTYSTKEKQTAFDTALSEANELIKKLTGAADQQAQPGQGTQQPDLSTKEAKQKALDAALKKLQDAAKALDGTKPIEPTPTPSPLPTPGDGTGAGTDNTGSGNAGSGNAGSGNAGSGSEAGYGVNDNAPTIVDKGELNIQIDSAETDSKPGNAGAGNANAGSATGAQGGAGTSSGSGMGTGTAGAANAGVDNKAVNNAVENAPEVKQADAAVKQAAATLDEALAQAKRVAADPHATQAQVDAAAVKLADARKALADAQANAAKVRAAVRSRVIKGMRSRGNAGVAAGADVATAGLMATMIAAIGGAFVTRRMRAMHANRD
>NC_014644.1|WP_013399740.1|1470632_1474652_-|DNA-directed-RNA-polymerase-subunit-beta'
MLDVNAFDKLRIGLATADDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDIAPKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEEDLHELEESGEAKGNAKSKLRAGAEREMAAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVDLWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAVELREEIDNGTGQRKARALKRLKVVNAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRGDSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQGRIFSSLAEAQMALDKHEIDMQAKVLIRVPEDFVLPKDWEPGELKVVDPEPGSPDVVHEERFKDGTVLFATSYGRVLFNGTLPEDYPFVNQQVPKGVLSKIVDDIATRYSTAQVAASLDALKDLGFTRAPWSGVTMAFSDIVLPSNRESIAQDYENQAAKINSQYDMGLLTDEERRQELINLWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPVKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRGLMMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADGTTVLAKCGDALSMDVLRDLVAHGVEEVKARSVLTCESKRGVCAKCYGWSLATSSLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTTVEPIVYPVTRRAPMLVKDGDHVEVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYRSQGVDIHDKHIEVIVHQMLRRITVIDSGDTNLLPGELVDQAKFREANLEAVKNGGKPAAGRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTGLARYRNADVFADPEVRDAVYPNLGLGGADGTPSNFGESNMGDVDFSNIDFGDMQLGDEFNPDDFLDDQGGQGDYDDDLN
>NC_014644.1|WP_013399741.1|1474739_1478306_-|DNA-directed-RNA-polymerase-subunit-beta
MAAEQATTNTTKVIARADEHSIKLHKASDRVNFGSICEPIDVPYLLGVQTDSFDWLIGSERWKKRVEEDEANGTHTVPHVSGLEEVFQEISPIENFAETMSLTFSDPYFEEPRHTVLECKEKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRTQDRTSDKDVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRTQSAIVFLMAIGMTKPEIAEAFQGYPLVLDALEKEPIDTQNDALTDLYRKIRPADTATPDAGRNLLESFYFNTKRYDLARVGRYKINRKLGLEADYNDRSLNREDIIATIKYLVTLHSGEKTFPGKRDGEDVQLRVDVDDIDHFGNRRIRQVGELVQNQIRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTNEVEYMTADREAEHVIAQANQELDENGNFVGTQALARVDEEEAVDVPVSTVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQRQAVPLIKSERPLVGTGSEWRAAVDSGDVILSEKPGVVTYVSADIIRVMNDDGTQSSYKLSKFQRSNQTTCYNQVPLIKDGERVEAGTVLADGPATDKGELALGKNLLVAFMPWNGYNYEDAIIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAIANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIAVKEITREDAEDDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDINLDPDLEAAWKKYVPEGAEHGDPCTPVATPVFDGVRPETLKGLLSTTLADRDGNKLVGSDGKATLFDGRTGEPFPKPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLNSEGVAIDMKDEDDDPVSSSEDLGFNIGARPDSSAKEDQVIQEPEYQ
>NC_014644.1|WP_013399742.1|1478505_1479222_-|hypothetical-protein
MVTMPVLKRKPKRKISAARRRMYIRRRIIVCVGLLAVLVFCIFCIISVFKGIAAIGTAISKHSDVTLSKQLVPDPRPVGIIKKCSAKDVRIELTSASQSVPMGGSVEFTARIVHEGDDSCRIDASDGRMVLTIGDSVSADKSDKSDKSREKQEKQQKIEPQWRSDVCGIPLKPLLMAKGDSYEKKIVWSTDATVGTPTGKDCLDDADLPKVSRGTYIAQIAHKDVSGLQSNPVVISVR
>NC_014644.1|WP_004116653.1|1479276_1479960_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MQVTGKEDKSKEDKSMQDAQNPVNRVEQMYEYGYRKSNYGPDELVTDAHGNPISVMDAMLSAQDASTAQTQTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDYHDMAHVVMHPNFENLVESMPNSRIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFEGGK
>NC_014644.1|WP_004114476.1|1479971_1480919_-|EamA-family-transporter
MDVGFVKNIQKIKPKKPNPAVDHSPRTMMIGIILTILGGALWGTNATVSKILMSQYLVSPLQIACVRQLAAGVLFVIVASIVNRKQLVDALSTKKSWPMLVVTGIVCVLLTQVAYLFTIDWTNSGTATVLQSLNLLFVLVYVCLRSKRTPTLRENIGVLLAFAGTALMATGGNFSSLSLPLMGLLWGLADAASTAALAIMPVKLIAKWGNLTVNGITFIIAGLIMMPFVKPWQTMPPLDLRAYLLFTFTIVGGTFGAYWMFLAGVMRVGSVRGTLLGASEPVMAAITAVVFTGAVFSWADFAGFALIFIMMILLR
>NC_014644.1|WP_004573794.1|1481380_1482118_-|HNH-endonuclease
MQYDRNTHYSSNPISKRITSFIWLISLAILIGIVIGLVLPKINHDVGEITGEYVADGDAAALLNKLKVAKSHPSGYNRSVFGYRTTDVDKNGCDVREDVLARDLKQVRFKYSGSCKVASGLLHDPYTGLNINFVRGRKTSALVQIDHVVALENAWQSGAWKWSHAKRLKFGNDMLNLLAVQGAANQEKGSASAAYWLPSNKSFRCDYVARQIAVKYKYDLSVTSAEKRSMASILHGCSAQKLPNS
>NC_014644.1|WP_004114467.1|1484956_1485640_-|ribonuclease-HII
MAAVPSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLINAHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAHIAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTSLSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISWHLS
>NC_014644.1|WP_004114457.1|1486570_1486939_-|50S-ribosomal-protein-L19
MVNAVEAFDAKHLKSAEEIPAFRPGDTVDVNVKIQEGNNTRIQTFTGVVIARKGAGVRETFVVRKVSFGTGVERRFPLHSPAIDSIKLVRSGRVRRAKLYYLRALRGKAARIAERRDNSAAK
>NC_014644.1|WP_009994361.1|1487192_1488743_-|AAA-associated-domain-containing-protein
MNTLNKTAEKAAQNLAAQSSVTSDIIDAKHITQSFTSDSGTTQHVLHDISFTLREGEIVAILGRSGAGKSTFLRTMAGLIQPTEGTVTYRGRELTGPNPGVAIVFQTFALMPWLTVQDNVELGLRARGVSKEKRTELALAAIDAIGLDGFETAYPKELSGGMRQRVGIARALVLRPDALFMDEPFSALDVLTAENLRQEVLKLWSSEERDIKSVVIVTHNIEEAVQMADRVVVLGSHPGHLIADVQVDLPRPRDKHSAEFEAMVDNLYAILTGSMPEGESEPDNTDTTVAGDLSGADGDSQPVEQTDAEETEAAAIADMLIQKHHDAEAEAKQNEEQADAGEPKPEPVAVHLLPNATPGGMAGLLDVISEEPDGIDLADLAADLSFEIDDLFPLVDAGTMLNLLTAENGHITITPAGQEWHNADILHSKQVFARLAIEHAPLVHAIDQALSRNRNGKLRGELILDLLRSKHTDALARQQFDIAISWGRYGELFDYDADDDELTRTVETAPLNGVVR
>NC_014644.1|WP_009994359.1|1488851_1490600_-|ABC-transporter-permease-subunit
MTIFTTSGKNGASTQVDENTRFWSDIIVCVGIIALFGVSAFLLQRINQPIGPKGIPSAVSTDLINLPYYTLRSVFRMMLALIASLIFTIIYGSLAARSRRLGKVLIPLLDILQSVPILGFLSATVTIWLVIFPGSMMGVEAASIFAIFTSQAWNMTFSFHRSLLSEPKELDEAVRSLQLTHWQRFWVLDMPNAMIPLLWNCMMSVGGGWFFLTASEMISVNNHTYALPGVGSFVAQSAAENKLGNIWWAILSMIVVVLAIDFFLWKPLTAWAERFRITQSASDEERKSAVLTLIRHSHADEVISKLFSPIREWLEIITRPFGRTGSQWPRKASQRKLGDLVFNIVMAVLILGLAAQMLYFVATRTGLQEFATAGALGALTFARVAVLIFVSSLIWVPVGVYIGMNPKISRIMQPVVQILASFPANFVFPFAMMWFMAWHIDLGWGSIILMALGTQWYILFNVIAGASAIPDDLREMARSFRLNRMLKWKTLVLPAIFGSWCTGGITAAGGAWNASIVSEIVEYGKNHMATQGLGAYITNATTVGDSVKTLVGVTVMSLIVVLSNRLFWTPLQRYSAKRFVLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014644_2	2.12\|837113\|33\|NC_014644\|PILER-CR	837113-837145	33	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	189674-189706	6	0.818
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	NC_041878	Pectobacterium phage CBB, complete genome	294908-294940	6	0.818
NC_014644_2	2.37\|837107\|33\|NC_014644\|CRISPRCasFinder,CRT	837107-837139	33	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	189674-189706	6	0.818
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	NC_041878	Pectobacterium phage CBB, complete genome	294908-294940	6	0.818
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	95503-95535	7	0.788
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	95503-95535	7	0.788
NC_014644_3	3.1\|1124220\|30\|NC_014644\|CRISPRCasFinder	1124220-1124249	30	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	537966-537995	7	0.767
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	NZ_CP007767	Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence	30355-30387	8	0.758
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	NZ_CP044261	Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence	29040-29072	8	0.758
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	NC_012040	Campylobacter lari RM2100 plasmid pCL2100, complete sequence	25641-25673	8	0.758
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	313523-313555	8	0.758
NC_014644_2	2.16\|837357\|33\|NC_014644\|PILER-CR	837357-837389	33	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	72113-72145	8	0.758
NC_014644_2	2.16\|837357\|33\|NC_014644\|PILER-CR	837357-837389	33	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	72099-72131	8	0.758
NC_014644_2	2.16\|837357\|33\|NC_014644\|PILER-CR	837357-837389	33	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	72105-72137	8	0.758
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693202	Marine virus AFVG_25M396, complete genome	16746-16778	8	0.758
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693175	Marine virus AFVG_25M140, complete genome	15916-15948	8	0.758
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693603	Marine virus AFVG_25M138, complete genome	20894-20926	8	0.758
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	NZ_CP007767	Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence	30355-30387	8	0.758
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	NZ_CP044261	Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence	29040-29072	8	0.758
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	NC_012040	Campylobacter lari RM2100 plasmid pCL2100, complete sequence	25641-25673	8	0.758
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	313523-313555	8	0.758
NC_014644_2	2.41\|837351\|33\|NC_014644\|CRISPRCasFinder,CRT	837351-837383	33	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	72113-72145	8	0.758
NC_014644_2	2.41\|837351\|33\|NC_014644\|CRISPRCasFinder,CRT	837351-837383	33	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	72099-72131	8	0.758
NC_014644_2	2.41\|837351\|33\|NC_014644\|CRISPRCasFinder,CRT	837351-837383	33	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	72105-72137	8	0.758
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693202	Marine virus AFVG_25M396, complete genome	16746-16778	8	0.758
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693175	Marine virus AFVG_25M140, complete genome	15916-15948	8	0.758
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693603	Marine virus AFVG_25M138, complete genome	20894-20926	8	0.758
NC_014644_1	1.1\|418218\|36\|NC_014644\|PILER-CR	418218-418253	36	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	201448-201483	9	0.75
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	36248-36280	9	0.727
NC_014644_2	2.9\|836930\|33\|NC_014644\|PILER-CR	836930-836962	33	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	191518-191550	9	0.727
NC_014644_2	2.15\|837296\|33\|NC_014644\|PILER-CR	837296-837328	33	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	344065-344097	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694387	Marine virus AFVG_250M329, complete genome	26222-26254	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN693994	Marine virus AFVG_250M330, complete genome	26085-26117	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694465	Marine virus AFVG_250M1200, complete genome	27024-27056	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694767	Marine virus AFVG_250M328, complete genome	26230-26262	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694500	Marine virus AFVG_250M1198, complete genome	27064-27096	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694373	Marine virus AFVG_250M164, complete genome	26406-26438	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694400	Marine virus AFVG_250M1011, complete genome	26764-26796	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694490	Marine virus AFVG_250M148, complete genome	27065-27097	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN693851	Marine virus AFVG_250M123, complete genome	26749-26781	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN693612	Marine virus AFVG_250M85, complete genome	27370-27402	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694262	Marine virus AFVG_250M733, complete genome	27159-27191	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MT601271	Bacillus phage vB_BsuM-Goe10, complete genome	78348-78380	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	KY368639	Bacillus phage vB_BsuM-Goe2, complete genome	76292-76324	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	KF669649	Bacillus phage CampHawk, complete genome	76951-76983	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN693857	Marine virus AFVG_250M1199, complete genome	27070-27102	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	NC_011421	Bacillus phage SPO1, complete genome	76065-76097	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN693690	Marine virus AFVG_250M149, complete genome	14454-14486	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694569	Marine virus AFVG_250M103, complete genome	16321-16353	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694581	Marine virus AFVG_250M102, complete genome	16318-16350	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MN694308	Marine virus AFVG_250M150, complete genome	14456-14488	9	0.727
NC_014644_2	2.19\|837540\|33\|NC_014644\|PILER-CR	837540-837572	33	MH153807	Rhodococcus phage Peregrin, complete genome	43544-43576	9	0.727
NC_014644_2	2.22\|837723\|33\|NC_014644\|PILER-CR	837723-837755	33	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	278571-278603	9	0.727
NC_014644_2	2.22\|837723\|33\|NC_014644\|PILER-CR	837723-837755	33	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	99851-99883	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693463	Marine virus AFVG_25M283, complete genome	15471-15503	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693331	Marine virus AFVG_25M281, complete genome	21040-21072	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693334	Marine virus AFVG_25M282, complete genome	21030-21062	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MN693110	Marine virus AFVG_25M284, complete genome	21056-21088	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	MH319721	Marine virus AG-345-D19 Ga0172267_102 genomic sequence	816-848	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	KX229736	Campylobacter phage PC5, complete genome	88077-88109	9	0.727
NC_014644_2	2.27\|838028\|33\|NC_014644\|PILER-CR	838028-838060	33	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	69412-69444	9	0.727
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	36248-36280	9	0.727
NC_014644_2	2.34\|836924\|33\|NC_014644\|CRISPRCasFinder,CRT	836924-836956	33	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	191518-191550	9	0.727
NC_014644_2	2.40\|837290\|33\|NC_014644\|CRISPRCasFinder,CRT	837290-837322	33	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	344065-344097	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694387	Marine virus AFVG_250M329, complete genome	26222-26254	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN693994	Marine virus AFVG_250M330, complete genome	26085-26117	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694465	Marine virus AFVG_250M1200, complete genome	27024-27056	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694767	Marine virus AFVG_250M328, complete genome	26230-26262	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694500	Marine virus AFVG_250M1198, complete genome	27064-27096	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694373	Marine virus AFVG_250M164, complete genome	26406-26438	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694400	Marine virus AFVG_250M1011, complete genome	26764-26796	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694490	Marine virus AFVG_250M148, complete genome	27065-27097	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN693851	Marine virus AFVG_250M123, complete genome	26749-26781	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN693612	Marine virus AFVG_250M85, complete genome	27370-27402	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694262	Marine virus AFVG_250M733, complete genome	27159-27191	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MT601271	Bacillus phage vB_BsuM-Goe10, complete genome	78348-78380	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	KY368639	Bacillus phage vB_BsuM-Goe2, complete genome	76292-76324	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	KF669649	Bacillus phage CampHawk, complete genome	76951-76983	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN693857	Marine virus AFVG_250M1199, complete genome	27070-27102	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	NC_011421	Bacillus phage SPO1, complete genome	76065-76097	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN693690	Marine virus AFVG_250M149, complete genome	14454-14486	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694569	Marine virus AFVG_250M103, complete genome	16321-16353	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694581	Marine virus AFVG_250M102, complete genome	16318-16350	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MN694308	Marine virus AFVG_250M150, complete genome	14456-14488	9	0.727
NC_014644_2	2.44\|837534\|33\|NC_014644\|CRISPRCasFinder,CRT	837534-837566	33	MH153807	Rhodococcus phage Peregrin, complete genome	43544-43576	9	0.727
NC_014644_2	2.47\|837717\|33\|NC_014644\|CRISPRCasFinder,CRT	837717-837749	33	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	278571-278603	9	0.727
NC_014644_2	2.47\|837717\|33\|NC_014644\|CRISPRCasFinder,CRT	837717-837749	33	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	99851-99883	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693463	Marine virus AFVG_25M283, complete genome	15471-15503	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693331	Marine virus AFVG_25M281, complete genome	21040-21072	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693334	Marine virus AFVG_25M282, complete genome	21030-21062	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MN693110	Marine virus AFVG_25M284, complete genome	21056-21088	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	MH319721	Marine virus AG-345-D19 Ga0172267_102 genomic sequence	816-848	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	KX229736	Campylobacter phage PC5, complete genome	88077-88109	9	0.727
NC_014644_2	2.52\|838022\|33\|NC_014644\|CRISPRCasFinder,CRT	838022-838054	33	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	69412-69444	9	0.727
NC_014644_3	3.1\|1124220\|30\|NC_014644\|CRISPRCasFinder	1124220-1124249	30	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	64565-64594	9	0.7
NC_014644_1	1.1\|418218\|36\|NC_014644\|PILER-CR	418218-418253	36	EU826470	Mycobacterium phage Solon, complete genome	29066-29101	10	0.722
NC_014644_2	2.25\|837906\|33\|NC_014644\|PILER-CR	837906-837938	33	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	503522-503554	10	0.697
NC_014644_2	2.50\|837900\|33\|NC_014644\|CRISPRCasFinder,CRT	837900-837932	33	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	503522-503554	10	0.697
NC_014644_1	1.1\|418218\|36\|NC_014644\|PILER-CR	418218-418253	36	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	1095429-1095464	11	0.694
NC_014644_2	2.12\|837113\|33\|NC_014644\|PILER-CR	837113-837145	33	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	86022-86054	11	0.667
NC_014644_2	2.12\|837113\|33\|NC_014644\|PILER-CR	837113-837145	33	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	88078-88110	11	0.667
NC_014644_2	2.13\|837174\|33\|NC_014644\|PILER-CR	837174-837206	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	919574-919606	11	0.667
NC_014644_2	2.37\|837107\|33\|NC_014644\|CRISPRCasFinder,CRT	837107-837139	33	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	86022-86054	11	0.667
NC_014644_2	2.37\|837107\|33\|NC_014644\|CRISPRCasFinder,CRT	837107-837139	33	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	88078-88110	11	0.667
NC_014644_2	2.38\|837168\|33\|NC_014644\|CRISPRCasFinder,CRT	837168-837200	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	919574-919606	11	0.667

1. spacer 2.12|837113|33|NC_014644|PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.818

cactcttgtagatgctgtgcttgag---cggcttat	CRISPR spacer
cactcttgtagatgcttggcttgagaatcggtt---	Protospacer
****************  *******   ***.*

2. spacer 2.27|838028|33|NC_014644|PILER-CR matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.818

-tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gtgacca-tgtaccatcttttaatgcttttgcga	Protospacer
 ** * * **************** *** *** *

3. spacer 2.37|837107|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.818

cactcttgtagatgctgtgcttgag---cggcttat	CRISPR spacer
cactcttgtagatgcttggcttgagaatcggtt---	Protospacer
****************  *******   ***.*

4. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.818

-tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gtgacca-tgtaccatcttttaatgcttttgcga	Protospacer
 ** * * **************** *** *** *

5. spacer 2.9|836930|33|NC_014644|PILER-CR matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tatcaatttaagagcgaaaagaaa---agtttttat	CRISPR spacer
catcaatttaagaacgaaaataaaatgagcttt---	Protospacer
.************.****** ***   **.***

6. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tatcaatttaagagcgaaaagaaa---agtttttat	CRISPR spacer
catcaatttaagaacgaaaataaaatgagcttt---	Protospacer
.************.****** ***   **.***

7. spacer 3.1|1124220|30|NC_014644|CRISPRCasFinder matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tttccgctttttgttgctctacacaccatt	CRISPR spacer
gctgcgctttttgttggtctacccaccaag	Protospacer
 .* ************ ***** *****

8. spacer 2.9|836930|33|NC_014644|PILER-CR matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

9. spacer 2.9|836930|33|NC_014644|PILER-CR matches to NZ_CP044261 (Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

10. spacer 2.9|836930|33|NC_014644|PILER-CR matches to NC_012040 (Campylobacter lari RM2100 plasmid pCL2100, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

11. spacer 2.9|836930|33|NC_014644|PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaa-gtttttat	CRISPR spacer
catcaacttaagagcgaaaacaaaataaatcta-	Protospacer
.*****.************* **** .  *.**

12. spacer 2.16|837357|33|NC_014644|PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

13. spacer 2.16|837357|33|NC_014644|PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

14. spacer 2.16|837357|33|NC_014644|PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

15. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693202 (Marine virus AFVG_25M396, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

16. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693175 (Marine virus AFVG_25M140, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

17. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693603 (Marine virus AFVG_25M138, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

18. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

19. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP044261 (Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

20. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to NC_012040 (Campylobacter lari RM2100 plasmid pCL2100, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

21. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaa-gtttttat	CRISPR spacer
catcaacttaagagcgaaaacaaaataaatcta-	Protospacer
.*****.************* **** .  *.**

22. spacer 2.41|837351|33|NC_014644|CRISPRCasFinder,CRT matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

23. spacer 2.41|837351|33|NC_014644|CRISPRCasFinder,CRT matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

24. spacer 2.41|837351|33|NC_014644|CRISPRCasFinder,CRT matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

25. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693202 (Marine virus AFVG_25M396, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

26. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693175 (Marine virus AFVG_25M140, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

27. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693603 (Marine virus AFVG_25M138, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

28. spacer 1.1|418218|36|NC_014644|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.75

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
cccggcgggggtcgccgtcgcggtggtcgggcgtgt	Protospacer
  ****** ****** ************* * . *.

29. spacer 2.9|836930|33|NC_014644|PILER-CR matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

30. spacer 2.9|836930|33|NC_014644|PILER-CR matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

31. spacer 2.15|837296|33|NC_014644|PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.727

tatggcattaaacggcattgacatatcatggta	CRISPR spacer
tgcggcattaaaaggcattaacatatcaataag	Protospacer
*..********* ******.********  . .

32. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694387 (Marine virus AFVG_250M329, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

33. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN693994 (Marine virus AFVG_250M330, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

34. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694465 (Marine virus AFVG_250M1200, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

35. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694767 (Marine virus AFVG_250M328, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

36. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694500 (Marine virus AFVG_250M1198, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

37. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694373 (Marine virus AFVG_250M164, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

38. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694400 (Marine virus AFVG_250M1011, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

39. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694490 (Marine virus AFVG_250M148, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

40. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN693851 (Marine virus AFVG_250M123, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

41. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN693612 (Marine virus AFVG_250M85, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

42. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694262 (Marine virus AFVG_250M733, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

43. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MT601271 (Bacillus phage vB_BsuM-Goe10, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

44. spacer 2.19|837540|33|NC_014644|PILER-CR matches to KY368639 (Bacillus phage vB_BsuM-Goe2, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

45. spacer 2.19|837540|33|NC_014644|PILER-CR matches to KF669649 (Bacillus phage CampHawk, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

46. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN693857 (Marine virus AFVG_250M1199, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

47. spacer 2.19|837540|33|NC_014644|PILER-CR matches to NC_011421 (Bacillus phage SPO1, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

48. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN693690 (Marine virus AFVG_250M149, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

49. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694569 (Marine virus AFVG_250M103, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

50. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694581 (Marine virus AFVG_250M102, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

51. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MN694308 (Marine virus AFVG_250M150, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

52. spacer 2.19|837540|33|NC_014644|PILER-CR matches to MH153807 (Rhodococcus phage Peregrin, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
agagcttgtaaacgcgcatgtagatatgttagt	Protospacer
 ************** * *******..  *. *

53. spacer 2.22|837723|33|NC_014644|PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

54. spacer 2.22|837723|33|NC_014644|PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

55. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693463 (Marine virus AFVG_25M283, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

56. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693331 (Marine virus AFVG_25M281, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

57. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693334 (Marine virus AFVG_25M282, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

58. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MN693110 (Marine virus AFVG_25M284, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

59. spacer 2.27|838028|33|NC_014644|PILER-CR matches to MH319721 (Marine virus AG-345-D19 Ga0172267_102 genomic sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atttctttgttccttcttttaattcttgtgcca	Protospacer
  *.   *** ** *****************.*

60. spacer 2.27|838028|33|NC_014644|PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atgcaactgcaccatcttttaattctttaatta	Protospacer
   *** **.*****************  ..**

61. spacer 2.27|838028|33|NC_014644|PILER-CR matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattc-ttgtgcta	CRISPR spacer
ctgcaagtttaccagcttttaattctttatatt-	Protospacer
.  ***** ***** ********** **.*..*

62. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

63. spacer 2.34|836924|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

64. spacer 2.40|837290|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.727

tatggcattaaacggcattgacatatcatggta	CRISPR spacer
tgcggcattaaaaggcattaacatatcaataag	Protospacer
*..********* ******.********  . .

65. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694387 (Marine virus AFVG_250M329, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

66. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN693994 (Marine virus AFVG_250M330, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

67. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694465 (Marine virus AFVG_250M1200, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

68. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694767 (Marine virus AFVG_250M328, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

69. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694500 (Marine virus AFVG_250M1198, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

70. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694373 (Marine virus AFVG_250M164, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

71. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694400 (Marine virus AFVG_250M1011, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

72. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694490 (Marine virus AFVG_250M148, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

73. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN693851 (Marine virus AFVG_250M123, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

74. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN693612 (Marine virus AFVG_250M85, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

75. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694262 (Marine virus AFVG_250M733, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

76. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MT601271 (Bacillus phage vB_BsuM-Goe10, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

77. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to KY368639 (Bacillus phage vB_BsuM-Goe2, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

78. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to KF669649 (Bacillus phage CampHawk, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

79. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN693857 (Marine virus AFVG_250M1199, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

80. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to NC_011421 (Bacillus phage SPO1, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

81. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN693690 (Marine virus AFVG_250M149, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

82. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694569 (Marine virus AFVG_250M103, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

83. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694581 (Marine virus AFVG_250M102, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

84. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MN694308 (Marine virus AFVG_250M150, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

85. spacer 2.44|837534|33|NC_014644|CRISPRCasFinder,CRT matches to MH153807 (Rhodococcus phage Peregrin, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
agagcttgtaaacgcgcatgtagatatgttagt	Protospacer
 ************** * *******..  *. *

86. spacer 2.47|837717|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

87. spacer 2.47|837717|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

88. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693463 (Marine virus AFVG_25M283, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

89. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693331 (Marine virus AFVG_25M281, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

90. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693334 (Marine virus AFVG_25M282, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

91. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MN693110 (Marine virus AFVG_25M284, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

92. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to MH319721 (Marine virus AG-345-D19 Ga0172267_102 genomic sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atttctttgttccttcttttaattcttgtgcca	Protospacer
  *.   *** ** *****************.*

93. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atgcaactgcaccatcttttaattctttaatta	Protospacer
   *** **.*****************  ..**

94. spacer 2.52|838022|33|NC_014644|CRISPRCasFinder,CRT matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattc-ttgtgcta	CRISPR spacer
ctgcaagtttaccagcttttaattctttatatt-	Protospacer
.  ***** ***** ********** **.*..*

95. spacer 3.1|1124220|30|NC_014644|CRISPRCasFinder matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.7

tttccgctttttgttgctctacacaccatt	CRISPR spacer
gcggggttttttgttgctccacacaccaca	Protospacer
 .   *.************.********.

96. spacer 1.1|418218|36|NC_014644|PILER-CR matches to EU826470 (Mycobacterium phage Solon, complete genome) position: , mismatch: 10, identity: 0.722

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
ggcggcggtggtggcggtggcggtggtcagaccagc	Protospacer
..********** ***** *********. .  .**

97. spacer 2.25|837906|33|NC_014644|PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

cgaagcctgcgaagtgttcctgctggaatgttt	CRISPR spacer
gtacagctgcgcagtgttcctgctgggatggac	Protospacer
  * . ***** **************.***  .

98. spacer 2.50|837900|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

cgaagcctgcgaagtgttcctgctggaatgttt	CRISPR spacer
gtacagctgcgcagtgttcctgctgggatggac	Protospacer
  * . ***** **************.***  .

99. spacer 1.1|418218|36|NC_014644|PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.694

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
tcaggcggcggtcgcggtcgcggtgctcggcttcgt	Protospacer
   *****.**************** ***     *.

100. spacer 2.12|837113|33|NC_014644|PILER-CR matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

101. spacer 2.12|837113|33|NC_014644|PILER-CR matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

102. spacer 2.13|837174|33|NC_014644|PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.667

gcgtcgtgccgcggcgtgcgatagtgtcatcga	CRISPR spacer
acgtactgccgcggcgtgcgatagtactcctcg	Protospacer
.***  *******************... .. .

103. spacer 2.37|837107|33|NC_014644|CRISPRCasFinder,CRT matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

104. spacer 2.37|837107|33|NC_014644|CRISPRCasFinder,CRT matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

105. spacer 2.38|837168|33|NC_014644|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.667

gcgtcgtgccgcggcgtgcgatagtgtcatcga	CRISPR spacer
acgtactgccgcggcgtgcgatagtactcctcg	Protospacer
.***  *******************... .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1629918 : 1636565

Mycobacterium_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013399773.1\|1629918_1631379_-	NADP-dependent phosphogluconate dehydrogenase	M1T2E7	Synechococcus_phage	3.4e-31	30.1
WP_004114274.1\|1631809_1632061_+	glutaredoxin family protein	G8I4I4	Mycobacterium_phage	2.1e-10	49.4
WP_013399774.1\|1632127_1632628_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	6.6e-11	30.8
WP_029600567.1\|1632718_1634923_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.8e-186	47.3
WP_004114270.1\|1635005_1636100_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	6.5e-112	61.0
WP_009994045.1\|1636277_1636565_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.4e-13	44.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection