CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	1 crisprs	NA	1	1	2	1
NC_004347	Shewanella oneidensis MR-1, complete sequence	5 crisprs	csa3,DEDDh,cas3,WYL,DinG	1	0	18	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_004349_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004349_1

65657-65767

Orphan

Consensus_repeat	Method
GCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004349_1

>merge|NC_004349|1|65657-65767|CRISPRCasFinder
GCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGCGGTTCTGTCGCAAACTGAGATCTTGCTGCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGC

>NC_004349|1|1|65657-65767|CRISPRCasFinder
GCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGC	GGTTCTGTCGCAAACTGAGATCTTGCT
GCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_004349.1\|WP_011074402.1\|61415_61715_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_004349.1\|WP_164925946.1\|59526_59880_-\|hypothetical-protein	unknown	unknown	unknown
NC_004349.1\|WP_011074407.1\|67554_67866_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_004349.1\|WP_011071076.1\|75736_76495_-\|IS5-like-element-ISSod6-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_004349.1\|WP_005054087.1\|63338_64541_+\|IS256-like-element-ISSod4-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_004349.1\|WP_011074405.1\|66534_67125_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_004349.1\|WP_011074406.1\|67294_67555_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_004349.1\|WP_011071076.1\|58733_59492_-\|IS5-like-element-ISSod6-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_004349.1\|WP_164925948.1\|65041_65566_-\|hypothetical-protein	unknown	unknown	unknown
NC_004349.1\|WP_011074412.1\|77712_79446_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
NC_004349.1\|WP_011074403.1\|62109_62595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379725
NC_004349.1\|WP_164925947.1\|59872_60175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222854
NC_004349.1\|WP_141135407.1\|69313_70473_+\|IS3-like-element-ISSod1-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_004349.1\|WP_011074401.1\|61180_61423_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NC_004349.1\|WP_011074410.1\|74610_75705_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|370113
NC_004349.1\|WP_011074411.1\|77038_77434_+\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NC_004349.1\|WP_011074409.1\|73411_74611_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NC_004349.1\|WP_011074400.1\|60345_60981_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NC_004349.1\|WP_011074398.1\|57967_58279_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|227025
NC_004349.1\|WP_011074413.1\|79655_81470_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625

Protein	Function_ID	Function_description	E-value
NC_004349.1\|WP_011074402.1\|61415_61715_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.99179e-17
NC_004349.1\|WP_011074407.1\|67554_67866_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	2.01747e-17
NC_004349.1\|WP_011071076.1\|75736_76495_-\|IS5-like-element-ISSod6-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.20837e-27
NC_004349.1\|WP_005054087.1\|63338_64541_+\|IS256-like-element-ISSod4-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.84672e-106
NC_004349.1\|WP_011074405.1\|66534_67125_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	9.78165e-54
NC_004349.1\|WP_011074406.1\|67294_67555_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.24159e-13
NC_004349.1\|WP_011071076.1\|58733_59492_-\|IS5-like-element-ISSod6-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.20837e-27
NC_004349.1\|WP_011074411.1\|77038_77434_+\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	5.83913e-14
NC_004349.1\|WP_011074412.1\|77712_79446_+\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	7.51066e-130
NC_004349.1\|WP_011074403.1\|62109_62595_-\|hypothetical-protein	gnl\|CDD\|379725	pfam15428, Imm26, Immunity protein 26. A predicted immunity protein with mostly all-beta fold and several conserved hydrophobic residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-URI1 or Tox-HNH family. The protein is also found heterogeneous poly-immunity loci.	8.60114e-10
NC_004349.1\|WP_164925947.1\|59872_60175_-\|hypothetical-protein	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	6.33979e-05
NC_004349.1\|WP_141135407.1\|69313_70473_+\|IS3-like-element-ISSod1-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.13132e-67
NC_004349.1\|WP_011074401.1\|61180_61423_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	1.29681e-23
NC_004349.1\|WP_011074410.1\|74610_75705_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	1.16413e-41
NC_004349.1\|WP_011074409.1\|73411_74611_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	1.42932e-34
NC_004349.1\|WP_011074400.1\|60345_60981_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	4.97574e-65
NC_004349.1\|WP_011074398.1\|57967_58279_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|227025	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown].	2.69111e-33
NC_004349.1\|WP_011074413.1\|79655_81470_-\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	6.85387e-155

>NC_004349.1|WP_164925948.1|65041_65566_-|hypothetical-protein
MLKNLLFLLVLIGTPVMAQISVDDVKVETHEKIESQLHSVHPSLLYLYAARLFQEDRKEEAVFWFYVGQLRFRYLLVVNPDLPLDGAPALMDALNENVGLYINEWVGKNPLLWVSLIDKALEWDTSNINVVTPKETHVKELLQVRSGLVDLRNYIVNHASEIREQRKAAGLPVD
>NC_004349.1|WP_005054087.1|63338_64541_+|IS256-like-element-ISSod4-family-transposase
MTQPFNFEQALKDLQSGKSLTGKDSILGPLIKQLTEAALQAELEQHLAHDPQPNRKNGKTPKTIKHPSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHVEDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLLALNMKGKKEILGLHLSENEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAYPLVINSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGRLDSVLEI
>NC_004349.1|WP_011074403.1|62109_62595_-|hypothetical-protein
MKDGDVYSIPLFLTDVSGLKSFSRYDFTKEGMAFCFARIIEDRGGSGLIIEVFNIQGGIEMSLSEIVNSSRLFNPVVIAGEAIKKKRWRLIGSTYYEKERDSNYSEITFLIGPRDNRLIWKGGVEIPIDDSNCHDFEEYIIWPAVQIEQRIVHELEKIGKN
>NC_004349.1|WP_011074402.1|61415_61715_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MYKLSNLAAEDFERIFEYTLLNFGVKQADDYTVSMHNALLAITEQPLIGHECLEIAKELRRHNHHKHAIFYKKQPDGIYILRILHQQMEPLRHFYPDTD
>NC_004349.1|WP_011074401.1|61180_61423_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MSRTTSVTIGSQLDEFVGQLISSGRYGSTSEVVRSALRLLERQENQTIALKMAIEAGEQSGECALSLHDIAAMVKQKHNV
>NC_004349.1|WP_011074400.1|60345_60981_-|recombinase-family-protein
MYIFGYLRASTSDQNAKRAQSTLQKFVQDRGFRIAGWYIENESGASLQRPELLRLLDDAAKGDAIIIEQIDRLSRLDEKSWFTLKEMLHGKELKVISLDLPTSHIALSPQITDEFTGSMIKAINSMMMDMLAAIARKDYQDRRRRQAEGIKKAKEGGKYRGRQADSDLHEKIYQLRVVNKLSISDTAKLTNVSDRTVIRVAKKLACDRSTG
>NC_004349.1|WP_164925947.1|59872_60175_-|hypothetical-protein
MQAATLMEHMAETLTTAKDYNEKLKANVFINMSPTNSQSEKLEARKLLKEYPEFTLLKSVIYERTAYRKSYAAAVGVHEWNDYKAKAEMSYLLMELMSNV
>NC_004349.1|WP_164925946.1|59526_59880_-|hypothetical-protein
MFSRDKMKKSESNIKAIDDFVDGADSNIRTKKVVDKKKPVSFSATDKQLAEIQGLVKKYNALAYKNDNRQEINRSDLIMAMKSHFEKMSDIEFYKEINKLGSVDLSRVIFRQHAKTL
>NC_004349.1|WP_011071076.1|58733_59492_-|IS5-like-element-ISSod6-family-transposase
MPRLMLTDARWEKLFHLMKSTGRVYDKPEHRQTFEGILYRLRTGIPWRDLPKEFGHWSTVFRRFHLWSKKGVLAHLFKALANLADIEWVFIDGSIVRAHQHSAGAATLSNESIGKSRGGNSTKIHLAVDSGGLPIYFELSEGQKHDITHAPSLIEHLKQVDTVIADKGYDSDAFRELIANKGGKSVIPRRRYKNTPQERVDWCLYRYRHLVENAFGRIKHYRAISTRYDKLARNYASMVSLAFMLMWLPMYC
>NC_004349.1|WP_011074398.1|57967_58279_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MHVISRKPFNDAAQKYPNDKDALVQIYSTLRSGTFTNPDDLRQVFPSLDNFKYRDKWWVIDVGGNNLRIIAFIEFRDNRMYVKHVVSHADYSKLTDKYRRTKE
>NC_004349.1|WP_011074405.1|66534_67125_-|recombinase-family-protein
MSRVGYARVSSTGQSLEVQLSKLHRAECNKIYQEKRSGRTAERSEFQSCMSYLREGDTLVVTRLDRLARSVVHLAQIASRFQSEGIDLLVIDQNIDTSTSTGRLMFNMLAAIAEFENDLRTERQAEGIAKAHENGVKFGRPVKLTDTLKQAIYDKRAEGATIGQLAKEYHLGEASIYRALNSVKSTQEITSKLISN
>NC_004349.1|WP_011074406.1|67294_67555_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MNTLSANEAKIHFGDLLLKAQQSPIQINKNGKPVAVVISADEYQSIEALKLHLLQSKAVKAMTDIQTGNLVDGNTFFDELAAGLYD
>NC_004349.1|WP_011074407.1|67554_67866_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAVTYHLTPDAQSDLIGIHRFTLAQWGATQSKTYLSGLKQTIQLLAETPTLGKNRPEVRMNVFSFPYSSHVIYYIQHEHQFVVFGILHKSMVPLTHLAERETI
>NC_004349.1|WP_141135407.1|69313_70473_+|IS3-like-element-ISSod1-family-transposase
MSLKKSHKSYPQAFKDEAVLMVLEQGYSVADAAKSLGVSTSLLYNWKEKHEALQQGITLEESERDELKRLRRENKELRMEKEIPKKGKRLLCERNEVRFRFIKLQSHLFPITLLCRVMSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIKYYNLERLHSANNDLSPVEFENSQVKVSSLG
>NC_004349.1|WP_011074409.1|73411_74611_+|AAA-family-ATPase
MDSMQTTETFQVLKIGADAYIKRRNQRLLSNHRKDLRKFTRAEAFTYLDIDAKTLDKYVATADFDPRRHEDSQWLINIEEMYQLRDLLPENLRKASKFKRSDNQKMQVIVIQNQKGGVGKTVSAATIASGLATEFHQEYRVGLIDMDGQATLSMYYAPEADLEGCLSVGDLMMNNFDLDEGETLEQVVSNAFLPTTIPNLRILPASQSDRAIEGWFHEQVFGQKLTSPYSLLNTIINAVQDEFDIIIIDTPPSLGYATYNAYFAATSVVFPLSITENDIDATCSYFSYIPQVWALLANANHRGYDFMKILITNHRDSATTTDLMNTLYDHFAPYMYSNEFKHSEAIRQSSSLLSTVFDMSKSEYPKSKATFQSAQQNCYEVTSQVLRDIVNVWREQEQA
>NC_004349.1|WP_011074410.1|74610_75705_+|chromosome-partitioning-protein-ParB
MAKKRGAMSPLGNAVGAEEAQKNAAKANIESLKRQITTEIQKVSDDVTLSLKNLFGLESVGNSFLWQLASGATATFTEATLSYEQVRDSTYVTFDVNGRDQALLNADSLQDLDSLAFQQFYPAVAREVNGKLDVLDGSRRRAWFLLQNGKVDIFRILVTKDDISLSDAKALAKQLQTAKEHNLREIGQQCLSLEKANPKITQAEVAAQLGMSQAGVSKALKAAKVDERLVKLFPVASDLSHTDYALLNKVMEVYEFEDELIEFINDLTQKIVIIQVEYSRAERKSAIIKAMKSELQIAKDMKSKALVSVTNLATFDSSGIYARKRIKGRNFAYEFGRLSLDIQKQLDIAIVDVLKKNKFNTTVD
>NC_004349.1|WP_011071076.1|75736_76495_-|IS5-like-element-ISSod6-family-transposase
MPRLMLTDARWEKLFHLMKSTGRVYDKPEHRQTFEGILYRLRTGIPWRDLPKEFGHWSTVFRRFHLWSKKGVLAHLFKALANLADIEWVFIDGSIVRAHQHSAGAATLSNESIGKSRGGNSTKIHLAVDSGGLPIYFELSEGQKHDITHAPSLIEHLKQVDTVIADKGYDSDAFRELIANKGGKSVIPRRRYKNTPQERVDWCLYRYRHLVENAFGRIKHYRAISTRYDKLARNYASMVSLAFMLMWLPMYC
>NC_004349.1|WP_011074411.1|77038_77434_+|two-pore-domain-potassium-channel-family-protein
MFSFFINIFKLLKAIVVGVKNDQDFRILLFLLVTILIGSTLFYSSVEGWSKVDALYFSVMTMSTIGYGDLVPTTDMSKIFTIIFSFLSIGIFVSLNTKIVVMTLNQKKQKLFDRKLRKDNEEVKKHTQSNT
>NC_004349.1|WP_011074412.1|77712_79446_+|amidohydrolase
MKTSAVVNLLIALFIAVPATAQEQGKSITVFTAKKIVTMDPTQPTATAIAVRDGMILGVGSLQDLAPWLKGSMYTINDQFKENVILPGFIDPHMHPMLGAIAFQTVWITPEPWNVMGHKTPATIGEKAYRATLKKAFDSRDPNAPIFMTWGFSSDTHGELSGRLLDDISKDVPILVLQRSLHEAYINTPLLTLLKTKGLNPNKFKDHLQIDWSKNHFWEDGLFSVVLPFMSSFLLDPNAADPGYLKTRDYLTYNGVTTVADMNTGGTNWELEISALKRNLDTPESPIRVRLTPDVMKLAAALKSPEAAMTLVNQMKQHNTDNLVFNGGIKLFADGAMFSQAMQINAPGYIDGHKGEWITQPSSFVEFARSYWNAGYQIHVHTNGDGGAKMVLDTLQELENDKPRADHRFTVEHYGYADDGTSRRIAKLDAQVSANPFYLFDLGDRYAENGLGFDRAARIAPLGGLASRNVPVALHSDFPMAPAEPLFLAWTAMSRETLSGKVFSPSERLTLDQAIRAITIDAAYMIGMENEVGSIEAGKLADFAVLDKDPYEVGMKGLRDIKVWGTVFRGKVHQAKK
>NC_004349.1|WP_011074413.1|79655_81470_-|amidohydrolase
MKFISSVVVCLSLSPFVHASSPPKTDAETIYIGGNIVTVTDSAPTAEALAVKNGRILALGKTSDLLKLKGSNTQVVNLNGKTLIPGFIDGHGHVFNTGIQALSANLLALPDGHVNDIAALQRELTVWAKKPENAKHGIILGFGYDDSQLAEQRHPTRQELDAVSNDIPILIIHQSGHLATLNTKALTLAGFNSNSKDPEGGKIRREADGKTPNGVLEETAFFGTLLPLFAKLNETENEAIFNAGMKLYASFGYTTAQEGRASSSAVKTMYNLAQQQKLPIDVAAYPDIQTAQEVIAPPYFSAHYNNGFRVAGAKLNLDGSPQGKTAWLTKPYLIPPVGQEPDYKGYPSMSDEKAAEYIALAQSKGWQLLTHVNGDAAIDQLLKGIEASEKIYGKPDRGFVAIHAQTARQDQIERFKRLGVFPSFFPMHTFYWGDWHMDSVLGKERAQNISPTGWARELGMIYTSHHDSPVALPNSMRVYSATVNRISRTGRVLGPAQKASPLEGLKSQTIWAATQYKEEESKGSLEVGKLADLVILSDNPLTIPAEKLADIQIIETIKEGKTVYKRNEQQTSDKVNHGGCIDSPRCQAVATTAMVAAGVLHHSH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349.1	51653-51679	0	1.0

1. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to position: 51653-51679, mismatch: 0, identity: 1.0

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgct	Protospacer
***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	65699-65725	0	1.0
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	51653-51679	0	1.0
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	65630-65656	1	0.963
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	85177-85203	1	0.963
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	126306-126332	1	0.963
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_016905	Shewanella baltica OS678 plasmid pSBAL67801, complete sequence	65404-65430	2	0.926
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_011664	Shewanella baltica OS223 plasmid pS22301, complete sequence	14405-14431	2	0.926
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_011664	Shewanella baltica OS223 plasmid pS22301, complete sequence	12055-12081	2	0.926
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_009999	Shewanella baltica OS195 plasmid pS19502, complete sequence	72875-72901	2	0.926
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_009661	Shewanella baltica OS185 plasmid pS18501, complete sequence	22536-22562	2	0.926
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	118711-118737	4	0.852
NC_004349_1	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	55445-55471	7	0.741

1. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 0, identity: 1.0

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgct	Protospacer
***************************

2. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 0, identity: 1.0

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgct	Protospacer
***************************

3. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 1, identity: 0.963

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgcc	Protospacer
**************************.

4. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 1, identity: 0.963

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgcc	Protospacer
**************************.

5. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 1, identity: 0.963

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgcg	Protospacer
**************************

6. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_016905 (Shewanella baltica OS678 plasmid pSBAL67801, complete sequence) position: , mismatch: 2, identity: 0.926

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgatatcttgcg	Protospacer
****************** *******

7. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_011664 (Shewanella baltica OS223 plasmid pS22301, complete sequence) position: , mismatch: 2, identity: 0.926

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgatatcttgcg	Protospacer
****************** *******

8. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_011664 (Shewanella baltica OS223 plasmid pS22301, complete sequence) position: , mismatch: 2, identity: 0.926

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgatatcttgcg	Protospacer
****************** *******

9. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_009999 (Shewanella baltica OS195 plasmid pS19502, complete sequence) position: , mismatch: 2, identity: 0.926

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgatatcttgcg	Protospacer
****************** *******

10. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_009661 (Shewanella baltica OS185 plasmid pS18501, complete sequence) position: , mismatch: 2, identity: 0.926

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgatatcttgcg	Protospacer
****************** *******

11. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.852

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagaacttagc	Protospacer
******************** ***. .

12. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.741

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgaggaacgagt	Protospacer
*******************.  . . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12944 : 53987

Acinetobacter_phage(29.41%)

transposase,bacteriocin,integrase

attL 21070:21129|attR 44993:46229

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011074356.1\|12944_15911_-\|transposase	Tn3-like element ISSod9 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	71.6
WP_011074357.1\|16074_16365_+	nucleotidyltransferase	NA	NA	NA	NA
WP_011074358.1\|16361_16739_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_011074359.1\|16732_17290_+	recombinase family protein	A0A0C4UR34	Shigella_phage	6.8e-57	61.9
WP_011074360.1\|18773_19079_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.3e-12	40.2
WP_011074361.1\|19153_19453_+	HigA family addiction module antidote protein	I6ZVM3	Aeromonas_phage	3.1e-08	38.6
WP_141135407.1\|19522_20682_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
21070:21129	attL	NA	NA	NA	NA
WP_141135407.1\|21137_22296_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011074367.1\|22778_24653_+	ParB N-terminal domain-containing protein	A0A0F7L836	uncultured_marine_virus	1.8e-13	29.2
WP_011074368.1\|24777_25233_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_164925955.1\|25378_25723_+	hypothetical protein	NA	NA	NA	NA
WP_011074370.1\|25753_25975_+	hypothetical protein	NA	NA	NA	NA
WP_005054087.1\|26126_27329_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011979515.1\|27768_27996_+	hypothetical protein	K7P880	Enterobacteria_phage	5.6e-10	41.1
WP_141135407.1\|28345_29505_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925956.1\|29582_30668_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_011074373.1\|30831_31083_+	antitoxin	NA	NA	NA	NA
WP_011074374.1\|31076_31394_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_011074375.1\|31538_32027_+	hypothetical protein	NA	NA	NA	NA
WP_011074377.1\|32495_33626_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	2.2e-30	29.1
WP_011074378.1\|33622_34993_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	4.5e-17	25.6
WP_011074381.1\|35915_37844_-	S9 family peptidase	NA	NA	NA	NA
WP_011074457.1\|38326_38530_-\|bacteriocin	bacteriocin-like peptide	NA	NA	NA	NA
WP_011074458.1\|38541_38751_-\|bacteriocin	bacteriocin-like peptide	NA	NA	NA	NA
WP_011074382.1\|38935_41113_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	4.6e-40	28.5
WP_011074383.1\|41112_42360_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011074384.1\|43721_44090_+	hypothetical protein	NA	NA	NA	NA
WP_164925945.1\|44151_45012_-	toprim domain-containing protein	NA	NA	NA	NA
WP_141135407.1\|45060_46219_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_193378421.1\|46155_46482_-	hypothetical protein	NA	NA	NA	NA
44993:46229	attR	NA	NA	NA	NA
WP_011074385.1\|46610_46793_+	hypothetical protein	NA	NA	NA	NA
WP_011074387.1\|47237_47987_+	hypothetical protein	NA	NA	NA	NA
WP_011074388.1\|48736_49027_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011074389.1\|49030_49558_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011074390.1\|49744_50431_+	ParA family protein	A0A0A8IL09	Aurantimonas_phage	4.1e-35	41.6
WP_011074391.1\|50423_50783_+	hypothetical protein	NA	NA	NA	NA
WP_011074392.1\|50927_51485_+\|transposase	IS6-like element ISSod8 family transposase	A0A1X9I6E7	Streptococcus_phage	1.3e-34	41.8
WP_141135407.1\|52828_53987_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6

DBSCAN-SWA_2

58733 : 139330

uncultured_virus(15.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011071076.1\|58733_59492_-\|transposase	IS5-like element ISSod6 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.1e-16	37.7
WP_164925946.1\|59526_59880_-	hypothetical protein	NA	NA	NA	NA
WP_164925947.1\|59872_60175_-	hypothetical protein	NA	NA	NA	NA
WP_011074400.1\|60345_60981_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.0e-09	29.4
WP_011074401.1\|61180_61423_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_011074402.1\|61415_61715_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011074403.1\|62109_62595_-	hypothetical protein	NA	NA	NA	NA
WP_005054087.1\|63338_64541_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_164925948.1\|65041_65566_-	hypothetical protein	NA	NA	NA	NA
WP_011074405.1\|66534_67125_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.6e-27	37.8
WP_011074406.1\|67294_67555_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011074407.1\|67554_67866_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_141135407.1\|69313_70472_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011074409.1\|73411_74611_+	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	6.9e-22	26.7
WP_011074410.1\|74610_75705_+	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	3.1e-45	40.6
WP_011071076.1\|75736_76495_-\|transposase	IS5-like element ISSod6 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.1e-16	37.7
WP_011074411.1\|77038_77434_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_011074412.1\|77712_79446_+	amidohydrolase	NA	NA	NA	NA
WP_011074413.1\|79655_81470_-	amidohydrolase	NA	NA	NA	NA
WP_011070548.1\|82899_84114_+\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_164925942.1\|84108_84255_-	hypothetical protein	NA	NA	NA	NA
WP_011074415.1\|84451_85009_+\|transposase	IS6-like element ISSod8 family transposase	A0A1X9I6E7	Streptococcus_phage	1.3e-34	41.8
WP_011074416.1\|85323_86964_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-32	45.7
WP_164925949.1\|87062_87401_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011074417.1\|88761_89148_+	hypothetical protein	NA	NA	NA	NA
WP_011074418.1\|89169_89901_+	EAL domain-containing protein	NA	NA	NA	NA
WP_011074419.1\|90084_94311_+	tandem-95 repeat protein	NA	NA	NA	NA
WP_011074420.1\|94601_98834_+	tandem-95 repeat protein	NA	NA	NA	NA
WP_164925957.1\|99875_100436_+	OmpA family protein	NA	NA	NA	NA
WP_011074420.1\|100524_104757_+	tandem-95 repeat protein	NA	NA	NA	NA
WP_164925950.1\|106120_106579_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011073373.1\|106553_107594_+\|transposase	IS481-like element ISSod13 family transposase	A0A077SLK2	Escherichia_phage	3.0e-175	84.4
WP_011074424.1\|107888_108812_-\|transposase	IS5-like element ISSod12 family transposase	A0A1V0E8E1	Vibrio_phage	2.0e-146	80.5
WP_011074426.1\|109107_109497_+	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	1.3e-14	45.8
WP_076611921.1\|113126_114278_+\|transposase	IS3-like element ISSod17 family transposase	U5P429	Shigella_phage	2.5e-106	67.7
WP_011074430.1\|114491_115694_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	6.6e-81	75.1
WP_011074431.1\|116107_116518_-	hypothetical protein	NA	NA	NA	NA
WP_011074432.1\|116514_116973_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164925951.1\|118855_120610_+	sel1 repeat family protein	NA	NA	NA	NA
WP_011070548.1\|120597_121812_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_193378422.1\|122088_122331_+	hypothetical protein	NA	NA	NA	NA
WP_011074433.1\|125217_126186_+	hypothetical protein	NA	NA	NA	NA
WP_164925958.1\|126481_128746_+	hypothetical protein	NA	NA	NA	NA
WP_011074435.1\|128754_130485_+	hypothetical protein	NA	NA	NA	NA
WP_011073373.1\|130883_131924_+\|transposase	IS481-like element ISSod13 family transposase	A0A077SLK2	Escherichia_phage	3.0e-175	84.4
WP_005054087.1\|132329_133532_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011074462.1\|135799_136192_+	DUF5086 family protein	NA	NA	NA	NA
WP_164925959.1\|136566_137412_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_006081628.1\|137524_138223_+	DUF2931 family protein	NA	NA	NA	NA
WP_011073373.1\|138289_139330_-\|transposase	IS481-like element ISSod13 family transposase	A0A077SLK2	Escherichia_phage	3.0e-175	84.4

Anti-CRISPR protein detection

Acr_ID: NC_004349.1|WP_011074458.1|38541_38751_-|bacteriocin-like-peptide

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_004349.1|WP_011074458.1|38541_38751_-|bacteriocin-like-peptide

38541_38751_-

69 aa aa

12944-53987

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_004349_1	Orphan	1.1\|65699\|27\|NC_004349\|CRISPRCasFinder	65699-65725	27	51679-51653	0

1. spacer 1.1|65699|27|NC_004349|CRISPRCasFinder matches to NC_004349 position: 51679-51653, mismatch: 0

ggttctgtcgcaaactgagatcttgct	CRISPR spacer
ggttctgtcgcaaactgagatcttgct	Protospacer
***************************

2. NC_004347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_004347_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004347_1

127647-127788

Orphan

Consensus_repeat	Method
GAAAGTGCATTATGTTGTTGATTTAAAATGGGTGGCCGGATTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004347_1

>merge|NC_004347|1|127647-127788|CRISPRCasFinder
GAAAGTGCATTATGTTGTTGATTTAAAATGGGTGGCCGGATTTATTCTTGATGACTCTCATTCAAGCCGCATTAGCCAAGGCAGGTTGTAGGCAAACCGAAAGTGCATTATGTTATTGATTTAAAATGGGTGGCCGGATTTA

>NC_004347|1|1|127647-127788|CRISPRCasFinder
GAAAGTGCATTATGTTGTTGATTTAAAATGGGTGGCCGGATTTA	TTCTTGATGACTCTCATTCAAGCCGCATTAGCCAAGGCAGGTTGTAGGCAAACC
GAAAGTGCATTATGTTATTGATTTAAAATGGGTGGCCGGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_004347.2\|WP_011070517.1\|119960_120194_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NC_004347.2\|WP_011070527.1\|129649_130228_-\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011070534.1\|136309_136903_+\|YhgN-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|170674
NC_004347.2\|WP_011070531.1\|133039_133489_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NC_004347.2\|WP_011070528.1\|130436_131705_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_004347.2\|WP_011070533.1\|134373_136014_-\|metal-transporter	unknown	unknown	gnl\|CDD\|237323
NC_004347.2\|WP_011070516.1\|118746_119961_+\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845
NC_004347.2\|WP_011070524.1\|126480_127458_+\|transposase	unknown	unknown	unknown
NC_004347.2\|WP_011070521.1\|123265_124255_-\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|377313
NC_004347.2\|WP_011070530.1\|132351_132912_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153250
NC_004347.2\|WP_011070520.1\|122641_123265_+\|MliC-family-protein	unknown	unknown	gnl\|CDD\|378282
NC_004347.2\|WP_011070532.1\|133510_134311_-\|NRDE-family-protein	unknown	unknown	gnl\|CDD\|377554
NC_004347.2\|WP_011070526.1\|129239_129632_+\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NC_004347.2\|WP_011070515.1\|117784_118621_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NC_004347.2\|WP_011070523.1\|125324_126302_+\|transposase	unknown	unknown	unknown
NC_004347.2\|WP_011070522.1\|124393_125005_-\|DUF3157-family-protein	unknown	unknown	gnl\|CDD\|371487
NC_004347.2\|WP_011070518.1\|120286_121630_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320684
NC_004347.2\|WP_011070519.1\|121745_122360_-\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011070529.1\|131701_132325_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|182514
NC_004347.2\|WP_011070525.1\|128106_128979_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_004347.2\|WP_011070517.1\|119960_120194_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	9.56914e-49
NC_004347.2\|WP_011070534.1\|136309_136903_+\|YhgN-family-NAAT-transporter	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	6.45535e-80
NC_004347.2\|WP_011070531.1\|133039_133489_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	2.62686e-05
NC_004347.2\|WP_011070528.1\|130436_131705_+\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.19957e-26
NC_004347.2\|WP_011070533.1\|134373_136014_-\|metal-transporter	gnl\|CDD\|237323	PRK13263, ureE, urease accessory protein UreE; Provisional.	0.0019728
NC_004347.2\|WP_011070516.1\|118746_119961_+\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
NC_004347.2\|WP_011070521.1\|123265_124255_-\|DUF481-domain-containing-protein	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	6.04798e-14
NC_004347.2\|WP_011070530.1\|132351_132912_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153250	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.	1.73775e-85
NC_004347.2\|WP_011070520.1\|122641_123265_+\|MliC-family-protein	gnl\|CDD\|378282	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme. Lysozymes are ancient and important components of the innate immune system of animals that hydrolyze peptidoglycan, the major bacterial cell wall polymer. Various mechanisms have evolved by which bacteria can evade this bactericidal enzyme, one being the production of lysozyme inhibitors. MliC (membrane bound lysozyme inhibitor of c-type lysozyme) of E. coli and Pseudomonas aeruginosa, possess lysozyme inhibitory activity and confer increased lysozyme tolerance upon expression in E. coli. Structural analyses show that the invariant loop of MliC plays a crucial role in the inhibition of the lysozyme by its insertion into the active site cleft of the lysozyme, where the loop forms hydrogen and ionic bonds with the catalytic residues.	2.08596e-20
NC_004347.2\|WP_011070532.1\|133510_134311_-\|NRDE-family-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	5.57327e-96
NC_004347.2\|WP_011070526.1\|129239_129632_+\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	2.53517e-31
NC_004347.2\|WP_011070515.1\|117784_118621_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	5.02671e-124
NC_004347.2\|WP_011070522.1\|124393_125005_-\|DUF3157-family-protein	gnl\|CDD\|371487	pfam11355, DUF3157, Protein of unknown function (DUF3157). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.48074e-88
NC_004347.2\|WP_011070518.1\|120286_121630_-\|M48-family-metalloprotease	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.56752e-60
NC_004347.2\|WP_011070529.1\|131701_132325_-\|LysE-family-translocator	gnl\|CDD\|182514	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional.	9.39234e-38

>NC_004347.2|WP_011070524.1|126480_127458_+|transposase
MPRPRRTQISLEDTPYYHCCSRVVRRAFLCGDDAYSGKNYDHRRAWVESLLFELEAVFSIDVAAFAVMSNHLHVVLRVDIDSANRWTDREVLEQWHKLFKGDELTQKFARGELVEAHEVNRLKHSIAIYRSRLCDISWFMRCLNEPIARQANQEDNCTGRFWEGRFKSQALLDDAAVLACMTYVDLNPIRAQLADTPEQSDHTSIQRRIWAALKGEQPSNLLPFIGNECDNQPNGIAFSLMDYLQLVDDTGRIIRNDKRGYINESSAKILNRLNIPHDNWLKLTTEFGKLFHGPVGTLQELTDYCEHLEKRRRHFASSCQHFNCN
>NC_004347.2|WP_011070523.1|125324_126302_+|transposase
MPRPRRTLISLEDTPYYHCCSRVVRRAFLCGDDAYSGKNYDHRRAWVESLLFELEAVFSIDVAAFAVMSNHLHLVLRVDIDSANGWTDREVLEQWHKLFKGDELTQKFARGELVEAHEVNRLKHSIAIYRSRLCDISWFMRCLNEPIARQANQEDNCTGRFWEGRFKSQALLDDAAVLACMTYVDLNPIRAQLADTPEQSDHTSIQLRIRAALKGEQPSNLLPFIGNECDNQPNGIAFSLMDYLQLVDDTGRIIRNDKRGYISESSAKILNRLNIPHDNWLKLTTEFGKLFHGPVGTLQELTDYCEHLEKRRRHFAASCQHFHRN
>NC_004347.2|WP_011070522.1|124393_125005_-|DUF3157-family-protein
MQTSFRLSALSSLLLLSSSVMAADVAIITLENGAQVRLKDDFTWEYIITETKAAEMPVAVAAAPSTNIVNTNTAAVAVAPVTTLTANAIARPELLGSTAKDGIKVSFTDSQWKGNKLGLTFELASTSGEHVTLVEVETSFFADDGSLLKTEKLGVWKAIFRMPETYLRKGEQRKSRVIWIEGVDKNRWQKQLLNLKITEIESR
>NC_004347.2|WP_011070521.1|123265_124255_-|DUF481-domain-containing-protein
MPNPNPKLCMAMLLTGLSGQSLADSVLLRNGDKITGEIKSFDEEHLVIKPSYSPKISIERSAIKSFETNHNQHWSINRTLQNVSIRSSDLDGFVLVNNRQTPISELVYSDRKSDSEWRYSGSVEAAIDVTSNTKNTQKLHAKSDLTAETLQWRHNLKNEVRYETEDKTTKRNTLEAHYSLDYLISEHWLLRQEDYFHEDRLDTSIRNYYAALGPGYRFWGVGRDKLDFVVTYNHFWIDSQIFTYQLNAWATTINYKQYWFDGVLETYADLQIAFPDTPTIDYISDVTLGLKYLLTQQIYLSFKYDISETMSSVRHTQNTTYNLGLGVNF
>NC_004347.2|WP_011070520.1|122641_123265_+|MliC-family-protein
MKLTKIINIQVLGVAGVLATALCLPAIAAESPSFDCGKVQAGSIEEMVCRDAGLIKLDRQLADVYAKATEKAKNEQPPVLKAMQRGWVKGRNECWKSEDKRTCVESSYQTRIAQLQAQYRLVEMTGPVFYTCDGNPANEVVVSYFKTEPATLIAERGDQTSLMFIQRSASGAKYQGQNESLWEHHGEARIVWGYETPEMTCKVKTPK
>NC_004347.2|WP_011070519.1|121745_122360_-|hypothetical-protein
MDTRTKLFGSLLIIALIPCGIWATQQTSTQSSAETNISVNSQNYPDFSWIYVHQDGEMTIGSGQSQDWNKLKSQGNPYKTNYLWVKTAGKAYVITKQDLVNQVKEAVRPMQLQGEKMQRLGEQMQQQGDAISEQTSQLILNLATGEKDAEANSQIENLGTSMDVLGQEMEQLGQVQQELANVAEKQVFELAQNTIKRGDATLAP
>NC_004347.2|WP_011070518.1|120286_121630_-|M48-family-metalloprotease
MEQVVNTGNDNPIQMADTVYSKEKTLFTILAIISGLIWAVLIIATKGLALIYVLMFFIIYLFTHSAFISYLKGTAVEISPEQFPDLHKQYLACCKRLEIKEAPRAYLLAADGMLNALATRFLRRNYIVLFSSIVDALESDKDAINFYIGHELGHIRRNHIGKEPLLVFATWLPLIGAAYARACEYTCDLHGLRCCNSLRSATNAVAVLAAGVEQWKRMNVDQYIRQTQESSGFWMSFHELNSSYPWLTKRMARVRAKAQGKDYSAPSRSVFAYIISLFTPRMGTAGGGIIILAAIIGVAAAVAIPAYKEYQEKVGAASINYDDANNSSSTPQMDTEPASVPDAALAIEHIDQLHQSLVPITDVLTKYYQNTKGWPTELEVLGLTDEQLSTFNLYTDGIVGFVTGEALGDYQGYEVYLSPQVDEQDNVTWVCSSNGIPDEYLPADCQG
>NC_004347.2|WP_011070517.1|119960_120194_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MSQYIPDYQLDMVGEPCPYPAVATLEAMPTLKPGEILEVISDCPQSINNIPLDAKNHGYKVLEIEQNGPTIRYLIQR
>NC_004347.2|WP_011070516.1|118746_119961_+|selenium-metabolism-membrane-protein-YedE/FdhT
MTWQQFKQQYLVRFWAPMPAVIAAGILSTYYFGLTGTFWAVTGEFTRWGGHLLQLVGANPETWGYFKVIGLQGSPLDRIDGMMIIGMFGGCIAAALWANNVKLRMPQSRIRIAQALIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYFGARFTLLPMFRIPVKLKKVDKASSVKQDENQARLRFRIGMLVFAAIIGWGLLTMFNAPKLGIAMLCGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIILGMAVSAIGIYSYVQLGVPPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHFWWVGLGNVLGSTLLAYYWDDLAQPLATNWDKVNLLTSFGDKGGLLVTYLLLALSFAAMLLWEKRFFARKAKRDEQLIAEAA
>NC_004347.2|WP_011070515.1|117784_118621_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MEYHSHTVVTERKVTLLEQGQASDLTDYVANEVRVALVYNGISHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLEFTPEGVLIQVEITQRCFMALKQLRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQFALEQVKDNQHHFKLTGATHAAMGLDLEGQIIAAYEDIGRHIALDKLIGGCSMRHAKRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALELAEKSNITLIGFCRNGRATLYTHGYRLLGLNRASLAKAI
>NC_004347.2|WP_011070525.1|128106_128979_+|hypothetical-protein
MTDTTYQFANYLAVFIDLLGHRDLYDKIAEIPPDGSEELSEFTSNVVEFIRSIEYLSKDVENYFTGHDSHESDLPWPEELAEFRAKMKNRICKVQRFSDGLVIFVPLKTDETHFPIGSVYKALGAAAMLILGSLAKGSPVRGGIAIGGGIELTDGELFGPVVGRAYEAESKIAQYPRIVVHPSVAKYVETHAAISEPKTNEEKYLKLMGSICSEMISHDVDGVQVLHYLGDALWGGILSNGGLPLLEKAREFAATQLLIHQNEGNSKLAIRYLLLNSYLTGNGPEASGEQ
>NC_004347.2|WP_011070526.1|129239_129632_+|DUF1090-domain-containing-protein
MLIKYHTYILVFGLVFSGLAWADELATTGCAAKLATINAELAEAKAAGNQHKVAGLEKAYAEVVNHCADDRLAVERLAKVEALEVKLAERQHELTEAIADGKPMDKINKKRQKIAEVESELAKVRAELTQ
>NC_004347.2|WP_011070527.1|129649_130228_-|hypothetical-protein
MYRHSSKFAYLSIGLLGLCQPLQATEYNTTTNLIVPNKSDETTNTPYVALMLDYVPATDNLYGITFAPYHFDDDYQRWGYYLGYARSRETDIPVPEPALSHRQESLWRLGLSYSLTADLSFYVGGSAYISTTAYTNNISPRIVDGKPTWEEDKTTQWGAEAGLRYRITEHIILSAGYNSSTESTIFSIGYAG
>NC_004347.2|WP_011070528.1|130436_131705_+|mechanosensitive-ion-channel
MDQEIRLEISTWLTGLGIDSQPSDGVSTSIMLLACVLVAAISYFIMHRGVIRAVNMVILRSRVTWDDVFMRYKVLEKLAMLVPAIVLNLLVPITLTEHPVLSSLVDRLLSIWLVILMIRAIYAGLDAVNEISDINEVSRRLPVKSFVQLFKLFLFFVGLIVCLSVLADQSPVYFLSGLGVATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDKTITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLTENDRKRLSKINCLKEYFPAKISEIQASNAKVSDLDMMVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAPTTEGLPIEVYIFTNDTRWAFYEAIQADIFDHIFAVLPEFGLQAFQAPTGNDIRSLKSVKVEG
>NC_004347.2|WP_011070529.1|131701_132325_-|LysE-family-translocator
MQTETWLLYFFAIVLIGISPGPIAMLSMSHGIHFGKKRSIATGLGSVSAALILMAASAAGLGAIISASEYGFTILKWCGAAYLVFLGIKLLLTKQQGQTLEVVKTEGKGTLKQLFKQAFLVGISNPKDLLFFAALFPQFIDLTAPQLPQLTILALTWALVDFSFVMIYASMANVLAPSLKASNKLHWFDRTSGGVFLTLAAILVSRD
>NC_004347.2|WP_011070530.1|132351_132912_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFTRLCRWLLNISGWRIQGELPTQAKYIVIVAPHTSNWDFIIGVLARGALNTRIHFLGKHQLFIPPWGWFFRAIGGSPVDRRKNNNLVDSVVQLFTTQSEYKLALAPEGTRSPVRRWKCGFYHIAAKAQVPIVPVGLDFACKAVVIRSPLQPVDIEKDMAEILSFYRSIKGRHPKTIPDYMPDNKR
>NC_004347.2|WP_011070531.1|133039_133489_+|nuclear-transport-factor-2-family-protein
MLRQGLIRKHILQCLTAILLLFVGQVSAVPTDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAAMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHSSD
>NC_004347.2|WP_011070532.1|133510_134311_-|NRDE-family-protein
MCILFIALNAHPQYPLIICANRDEFHHRPTAPAQFWPPERNMLAGKDLQAGGTWFGVNTQGQLAGVTNLRVAQKNQEPMRSRGELVIQALNSGSLICPNWLVEHAQDYQPFNLVFGQGTNLYCFNSIRRETVKLTQGFHAISNGAMDDVWPKMAKGQRSLEALIQQSAQLEVESLIKLMQDDSQPQDNELPDTGVGLEWKRRLAAIYIRHPDYGTRSTSILLQNAQGEIQFTEVRYDGKGRRLGQQDFHFTLPPQLPPEPDCLVVF
>NC_004347.2|WP_011070533.1|134373_136014_-|metal-transporter
MLYLLASCIALLIGPLFYRYFSSGSGLQKGLDGFIFVSLGGLVLIHILPELLEHGGLLAIVFVILGLWGPTASERLFHRYSEITHNFALFLGISGLLLHTITDGTAMVLAQQDGNSILLALGVILHRLPVGFAVWWILKPHLGVRWTLIIFAAIMLFTSIGYFASEQLLSHMSIDKTVYLQAFVTGSILHVVLHQPHGQQDVDKQGRYEYQAGIGSLLGIGLLMMLLLVDSGGHDHAHHNHSAEQLTTWLMTIAPVLLLSYAVAALRFKLGLTPQDNSLARRWFQRLAGPEALVLTALLLGPWLALFQLLVSFVMSAYLANAQVEITDPHTTLPSKALRFGFAHLVDRSAPWVLLSLVLVNLIGHPSVPLNNPMLQIAVLLLVFLPMRFCNLGAAVLSIALAYSGWSPLAIILPLIAAPVLSIAQLRLMNWPQRAILLAMIAIALVAALKLPMWFSLITLPEAINLVALLILSALFAASLLRLGPRKFLRRLMMLKPTAHGHKHSHDHAHTHAHSTVLPTPNSPTHSHDSSHGHTHDHADRDKHHH
>NC_004347.2|WP_011070534.1|136309_136903_+|YhgN-family-NAAT-transporter
MDIFSAAVMLFLIMDPLGNLPIFASILRHIDPKKRRRVLIRELIFALVIMLAFLYAGEAILSFLNLRSESVSIAGGIILFLIAIRMIFPQPGGVVGLAAGEEPFIVPMAIPLMAGPSILAALILLAHTDSSRMTDWTIALVSAWAASAVILMFYKLFTRMLGEKGLTAVERLMGMVLVMISVQMFLDGVSNYMKTAG

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Crispr_ID: NC_004347_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004347_2

437236-437357

Orphan

Consensus_repeat	Method
GCCCGTTCTGCTTTTTCTAGCAGCAGCGCTTTTTGCAGCGCTCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004347_2

>merge|NC_004347|2|437236-437357|CRISPRCasFinder
GCCCGTTCTGCTTTTTCTAGCAGCAGCGCTTTTTGCAGCGCTCTAGGACCTAGAGCCTAGAATCTATAAGGGCGCGGCCCGTTCTGCTTTTTCTAGCAGCAGTGCTTTTTGCAGCGCTCTAG

>NC_004347|2|2|437236-437357|CRISPRCasFinder
GCCCGTTCTGCTTTTTCTAGCAGCAGCGCTTTTTGCAGCGCTCTAG	GACCTAGAGCCTAGAATCTATAAGGGCGCG
GCCCGTTCTGCTTTTTCTAGCAGCAGTGCTTTTTGCAGCGCTCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004347.2\|WP_011070779.1\|435462_436008_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NC_004347.2\|WP_011070772.1\|427494_428229_-\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
NC_004347.2\|WP_011070773.1\|428221_428839_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_004347.2\|WP_011070784.1\|443262_444690_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_004347.2\|WP_164925812.1\|433390_433792_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227303
NC_004347.2\|WP_011070775.1\|430084_431356_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_004347.2\|WP_011070782.1\|438400_441067_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NC_004347.2\|WP_011070771.1\|427224_427434_-\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234754
NC_004347.2\|WP_011070789.1\|454705_455359_-\|hexitol-phosphatase-HxpB	unknown	unknown	gnl\|CDD\|236770
NC_004347.2\|WP_011070785.1\|444828_449304_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_004347.2\|WP_011070776.1\|431607_433317_-\|type-IV-A-pilus-assembly-ATPase-PilB	unknown	unknown	gnl\|CDD\|274186
NC_004347.2\|WP_011070774.1\|428992_429919_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NC_004347.2\|WP_011070788.1\|454326_454653_-\|DUF2845-domain-containing-protein	unknown	unknown	gnl\|CDD\|371338
NC_004347.2\|WP_011070780.1\|436277_437129_+\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|236811
NC_004347.2\|WP_011070787.1\|451966_454009_+\|M13-family-peptidase	unknown	unknown	gnl\|CDD\|341056
NC_004347.2\|WP_011070781.1\|437566_438319_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NC_004347.2\|WP_011070790.1\|455780_458378_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_004347.2\|WP_164925601.1\|449531_451745_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132844
NC_004347.2\|WP_011070783.1\|441079_443113_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NC_004347.2\|WP_011070778.1\|434287_435169_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181612

Protein	Function_ID	Function_description	E-value
NC_004347.2\|WP_011070779.1\|435462_436008_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.1644e-127
NC_004347.2\|WP_011070772.1\|427494_428229_-\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	1.63395e-126
NC_004347.2\|WP_011070773.1\|428221_428839_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.18193e-103
NC_004347.2\|WP_011070784.1\|443262_444690_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_004347.2\|WP_164925812.1\|433390_433792_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	5.768e-11
NC_004347.2\|WP_011070775.1\|430084_431356_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.267e-148
NC_004347.2\|WP_011070782.1\|438400_441067_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NC_004347.2\|WP_011070771.1\|427224_427434_-\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234754	PRK00418, PRK00418, DNA gyrase inhibitor YacG.	1.30082e-23
NC_004347.2\|WP_011070789.1\|454705_455359_-\|hexitol-phosphatase-HxpB	gnl\|CDD\|236770	PRK10826, PRK10826, hexitol phosphatase HxpB.	2.69815e-146
NC_004347.2\|WP_011070785.1\|444828_449304_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.51356e-114
NC_004347.2\|WP_011070776.1\|431607_433317_-\|type-IV-A-pilus-assembly-ATPase-PilB	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NC_004347.2\|WP_011070774.1\|428992_429919_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	7.93276e-48
NC_004347.2\|WP_011070788.1\|454326_454653_-\|DUF2845-domain-containing-protein	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	1.3161e-24
NC_004347.2\|WP_011070780.1\|436277_437129_+\|beta-lactamase-regulator-AmpE	gnl\|CDD\|236811	PRK10987, PRK10987, beta-lactamase regulator AmpE.	4.60455e-136
NC_004347.2\|WP_011070787.1\|451966_454009_+\|M13-family-peptidase	gnl\|CDD\|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	0
NC_004347.2\|WP_011070781.1\|437566_438319_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	2.23959e-156
NC_004347.2\|WP_011070790.1\|455780_458378_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_004347.2\|WP_164925601.1\|449531_451745_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	3.21426e-61
NC_004347.2\|WP_011070783.1\|441079_443113_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NC_004347.2\|WP_011070778.1\|434287_435169_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181612	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase.	8.11334e-175

>NC_004347.2|WP_011070780.1|436277_437129_+|beta-lactamase-regulator-AmpE
MALFSLLVAILVERLKFLPAAWQCDRVLQSYQSTFFGDKASLNNTNMLLALILPAVVVYLLGWIVSDMFWGLLNLALWVLVAIICFNHQKQRDTFKKYMQAACRSDVQACYHYAAELDCSECLNAVSEKDLGAKVGQSVAWINYRYYGAVALLLIFLGPVGAALYCTARFYAEENIRKSLNLPLIEDIMFVLDWIPSRIFSFGYALSGQFSEGLSAWRDNALNVHTSARQVVTATALASQPLPEVSSAPVCVQSTLALLVLSKRNFTLMVAVLSLLTIFGLVS
>NC_004347.2|WP_011070779.1|435462_436008_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MSFEFGWFTAARRCESPHFNQRPFGEISLLVIHNISLPAGCFGLPYIDQLFQGCLDTNADNSFADLAGLKVSAHFLIRRDGECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPYTAAQYQQLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWERYLTKLRDF
>NC_004347.2|WP_011070778.1|434287_435169_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MLENDIRHAVKTALSEDLGGTEINEHTKAIAYGDITAELIPADKYAEATLITREEGVFCGKAWAEQVFNQLGGEVALHWHVDDGDLVLPNQVLCELSGPARALLTGERTAMNFIQTLSGVATLTKHYVDKLAGTHTRLLDTRKTIPGLRTAQKYAVTCGGGKNHRIGLFDAFLIKENHIMACGGISQAVEAARRLHPNKPVEVEVESLSELALALDSGTDIIMLDNFDITMMVEAVELNNQYKMKGSGAKLEVSGNVTLDTLAEFAKTGVDYISVGALTKHVRALDLSMRLKG
>NC_004347.2|WP_164925812.1|433390_433792_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MNKQAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQACIQTGVGCATIGTEITADPKIAATPDVAEATATALTYDDGTCTVTATIGATGGVSYAADTKETTKATKAQCEEGAGL
>NC_004347.2|WP_011070776.1|431607_433317_-|type-IV-A-pilus-assembly-ATPase-PilB
MPTTGLHLGLSTLFIRKGLLNEEQMATAITKSRQNKQTLVTTLVQTKLVSARSIAELCYEEYGTPLLDLAEFDVSAIPEEFLNKKLIEKHRCLPLFKRGNRLYIATSDPTNIAALEEFQFSAGLHAEAILVEEDKLAKALEKVLEEDITGLDLSGMDEAALAGIEITDTDKRNEETTGESSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRLSARLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCPECKQPEQIPDHELQRLGFSDVQIAQGFTTYKPVGCEHCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAGQAKAQGMRDLRQSGLLKVLQGVTSIAEVNRVTSF
>NC_004347.2|WP_011070775.1|430084_431356_-|type-II-secretion-system-F-family-protein
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDPKITPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVGG
>NC_004347.2|WP_011070774.1|428992_429919_-|prepilin-peptidase
MTEFFTLLGHTFDQAPWLFISLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADIVKQVGIDKLSKAIDHYPPKYNLVVPGSACPKCKTAIKPWHNLPMLGWLMLRGKCAACSAPISARYPIIELITGLLVATLAWHFGPSWQFVFAAILTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTSPADAMIGAAAGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPLVILLSSLVGAFVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL
>NC_004347.2|WP_011070773.1|428221_428839_-|dephospho-CoA-kinase
MSKFVVGLTGGIGSGKTTVANLFAEEGICLVDADVVAREVVAPGTHGLNAIISHFGTEMLTASGELDRAKLRQRVFNDEQERQWLNQLLHPMIRQEMLLQVEKATSDYVIMVVPLLFENGLDRLVHRTLVVDISPELQISRTVQRDNVDATQVNNIINSQCSRSEKLARADDIIDNHGEISRLKREVHALHQRYLQLSGNHNAHD
>NC_004347.2|WP_011070772.1|427494_428229_-|cell-division-protein-ZapD
MTDLVYEQPLNEKIRSYLRLEYLSKQLCNNLNNDHQHRCFYPLFSLCELSERCDYRNEVLKDIERNLLQLSKWQELEHIDSKQITFYIEALTQARESLQRPERCGNQLKQDRFLSALRQRFGMPGACCNFDLPQLHFWLAKPWDERRQDYQAWVSHFEPLLTPIALLLQLTRSTADYAKATAHAGFYQGDSTQALSLVRVKVDAAHGCYPTISGHKNRFAIHFVQFDQQRHSDRSIEFLLATCA
>NC_004347.2|WP_011070771.1|427224_427434_-|DNA-gyrase-inhibitor-YacG
MPLTVSCPICKTPVEWGPQSKFKPFCSERCKMIDLGDWASEKHAIPVKSEFDLDALDELGYDEDSFFKE
>NC_004347.2|WP_011070781.1|437566_438319_+|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYSKINQPKISDVIMAQLEQMILEGSLQPGQKLPPERELAIQFEVSRPSLREAIQKLEAKGLLMRRQGGGTYVKEQLWQSLADPIVELMTADPESQYDLLEFRHATEGMMAYFAALRGTDADMQNIKRMILEVEAATNIEQQAAAIVRFYRAVAEASHNVAMLHLVLSLTPVLHKNVAQNLELLSRREEASTMANDHRRALLAAIVRRDPEAAREASNEHLSYIEEVMLSVREEDSRLQRSLRRLKSGA
>NC_004347.2|WP_011070782.1|438400_441067_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYLNTIPAGQEPHMPGNQEMERRIRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRGPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEDQLANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALGAIGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDGEYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALDHAQKTKGRPTVILAKTVKGYGLGDAGEGKNIAHNVKKMGIESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRRAALHGSVPQRREKFSEELEVPSLKIFDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYREDKTGQVLQEGINELGAMSSWVAAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCITYDPTYGYEIAVVVQDGIRRMYGEKQEDIFYYLTTMNENYIQPEMPEGAEEGIVKGIYKLETVSGSGKGKVQLLSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAVERWNMLHPTQTPKQAYISQVISSDAPAIAATDYMKIYGEQLRAFMPTDYKVLGTDGFGRSDSRDNLRHHFEVDAKFIVIAALKSLVDRKELPVDVLANAIKEYGIDADKINPQYA
>NC_004347.2|WP_011070783.1|441079_443113_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAELKEVFVPDIGGDEVQVIEICAAVGDTLAAEESILTVESDKATMDIPAPFAGVLAELKVAVGDKVSEGTLIALIQAAGASAQAAAPVAQAAAPAPAPVQAAPAPVVAAPATGATKLVEAKVVEISVPDIGGDTDVSVIEVLVAAGDKIEVDAGLITLETDKATMDVPSPFAGVVKEVKVAVGDKVSQGSLVIMLEVGGAAPAAAPQANAPAASAPVAQAAPAAAVAPVAAVPVVAVKEIQVPDIGDASNVDVIEVLVSVGDMISADQGLITLETDKATMEVPAPFAGKLLSLTVKVGDKVSQGSVIATIETTSVATVSAGAATAPVAQAAAPAPVAQEAAPAPVAAAPSRPPVPHHPSAGAPVSTGAVHASPAVRRLAREFGVDLTQVTGSGRKGRIMKEDVQAYVKYELSRPKATAATSVATGNGGGLQVIAAPKVDFSKFGEVEEIPLSRIQKISGPNLHRNWVTIPHVTQFDEADITEMEEFRKQQNDAAAKKKADYKITPLVFMMKAVAKTLQQFPVFNSSLSSDGESLIQKKYFHIGVAVDTPNGLVVPVVRDVDKKGIIELSRELADISIRARDGKLKSADMQGSCFTISSLGGIGGTAFTPIVNYPDVAILGVSKSEIKPKWNGKEFEPKLMLPLSLSYDHRVIDGAMAARFSVTLSGILSDIRTLIL
>NC_004347.2|WP_011070784.1|443262_444690_+|dihydrolipoyl-dehydrogenase
MSNEIKTQVVVLGAGPAGYSAAFRAADLGLETVIVERFSTLGGVCLNVGCIPSKALLHVAKVIEEAKAVAAHGVVFGEPTIDLDKLRSFKQKVISQLTGGLGGMSKMRKVNVVNGFGKFSGPNSLEVTAEDGTVTVVKFDQAIIAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPGKLLVMGGGIIGLEMGTVYSSLGSEIDVVEMFDQVIPAADKDVVRVFTKQIKKKFNLILETKVTAVEAREDGIYVSMEGKSAPAEPVRYDAVLVAIGRTPNGKLIDAEKAGVKIDERGFINVDKQLRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGMKHYFDPKVIPSIAYTDPEVAWVGLTEKEAKEQGIAYETATFPWAASGRAIASDCSEGMTKLIFDKDTHRVIGGAIVGVNGGELLGEIGLAIEMGCDAEDLALTIHAHPTLHESVGLAAEIYEGSITDLPNPKAKKK
>NC_004347.2|WP_011070785.1|444828_449304_+|EAL-domain-containing-protein
MKKIIIHFLLASMLVFCSGLYSAWAGNFVQRVFTDRDGLEATSIRALTLDDHGFIWAATEQGLYRVSNSKVRRIDKTGSELRLADEFITTVVNIDRDLLLLSTNAATYLYNIAKNQFIQMGSPNLFPHFSGGVLISAVRKNAQEWRLLIDNGQIYDLSTATLTLTLVTQLPVNRDLPWRKLLSMPDGQILVAGQFQLLLLNHLGEKLVDYQWTESMGNILDMLEDSKQRIWIATSRGVYRFEPQTLQISPVPELPDWSTAMVEDRHGEIWFSSRAGLLKWSPDTHQLENYQQELKAQANMETLKAILFDKSGLMWVGGSGDGLALLASQPDFILDTFTSEPPHELSDAMVWSVFASDEGLWFGASHLSFIARNSQKAVTIDIDGLKPHESIYGISDFIDHYLLVSTTSGLFVVDKLTLKGSSFAQWAHGSEAFKNKVIYGTYADPKLKGRFWIASATGLYFWEQGLFEPQPFNIDGPTGDDSPELKRPTIRTLYRASDGKLWISGRKVFGYIDEQNLFHDQRQLFSGLNSEPSISHLEEISPGVMWFGSYERGLFEYHLQDGKLVSLTLQWQVNCSSVFFIQKTTNANIVACADSLIRQDRASGQIAMFTQLDGLISNEMNEGAYFYSPGAGLYIGTPEGVMHLDADKLTNRIADDHVMLESVSVYYDNNTQVSLLPQPMMVIKPGANMVSLQITNLDYLDDSPIQFKYRLRYQGDEDNYVLLQGESQINLAGLAAGEYVLEVLSQVNGIWSDKPFTFPFYVEQHWWLSQGFKGILLLVFSIIALGLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQCFYLDNRGYVLGNHANEIVLTLETLPVHPLDREKVLIQWNRMLSGDLDRFEAEYRYHRRDGNWGWLRVRGRPVARNKQTQEIERVAGIYSDITLRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIGSEQKSLVGLSFSQFVQMKDGLSTEVAQLLGQETSWTGERELVGQNGLVCPVWLNVSVMQSVNQNAIHYVVVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGNFKYYSSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFVRPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTIEPFKMSVNISAVHFRQPDFIDGVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAYLRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSRGCYIVQGYYFAKPMSVSDFEKYLQSQYPLDSLQS
>NC_004347.2|WP_164925601.1|449531_451745_+|patatin-like-phospholipase-family-protein
MMRRIVASLFLCVLLTPLYAAERPKIGVVLSGGGAKGAAHVGVLKVLEEHHIPVDYIAGTSIGAYVAGMYALGYSATEVEAIMMGVDWDSGYSDTIPRNVLSYRDKKLRDRYNIPLNIGYSEGEVKAPSGVLRGQTMSQLLRQSTDLVQQFGDFNALAIPYRAVATDLETSLPVVINHGSIVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVKKDKLDSTIAVLDQLSNFLTNASTEKQKQLLTDKDVLIRPAIDALSTTDFTIMPLALTLGKEAATNQLVKLQKLSVSEEQYAAYVEGKKAKGQMVMADVSHVIEDIVFDNQSKVSLNLLKETLELKPGQNITKDELNEAIKRIYALNKFERVDAEFVEGEDGRVLTVTTRAKSWGPNYFQLGFNWEDDFSSDSAISFDMAYTMTDLTINGGEWRNEVKLGFERLFATEFYQPLNRDQEFYSRARYQYDVHNWDLYDNNNRAFVFDKKTHTVELGIGYNYVLQGVVELGLVAEKGVIINDAWLSQDFDFNSYGAYLKVGYDSLDSISFPTSGNHITLNVYVRKENFDDVVEYQNDYSVQIEADWKGALSVGNHAFVGKASLATNNNDGFNTLHLSDLGGFLNLSGYHKDSLTGAHKIFGAFVYQYDLGRDALGMKDYPLYLGLSLEAGNVWFERSEVSLTDLIYASSLYIGTDTTMGPAALGFGITDMGDKSVYLFIGKAF
>NC_004347.2|WP_011070787.1|451966_454009_+|M13-family-peptidase
MKKISTLALGIALSLGLAACSSEPKTEVAAVSGIELQNFDASVRHQDDFYYSVNGKWLANTPIPADKSNYGAFSVLYDQSQDALKKIIDAAAAKKNAAPGSNDQKIGDFNASFMNTDLLETLGVTPLNPLLGDIAAVKTHGELPAVMGKLLTSGSGIPFGFYVNNDAKNSSQYAVYLSQSGLTLPDRDYYLKDDAKFVANRQAMAKYVTDILTEAGYKNAKRAAKNVADIEMMIAKSQWSRVESRDANKSYNKLDRAELQKLLGQFDFNAFAANAGLGDKVADVIVRQPSYFEKLGANFDAFPVSAWQDYLTFHLVDSYAELLSKNFVDLNFAFKSKTLMGIEEQQPRWKKAVDGADTVIGELVGEEYVKQYFKPEAKARMETMIKNLIKGFEVSINELEWMTPETKVAAQEKLSKFTYKIGYPDKWKDYSALEIKPDELVGNYMRYAQFEYQDMLNKLGKPIDRTEWRMTPQTVNAYYSPVGNEIVFPAAILQPPFFNMEADDAVNYGGIGAVIGHEISHGFDDQGAKYDGDGNLRDWWSDKDREEFQKRGKQLSEQYSGYEALPGKFVNGDLTLGENIGDLGGLTVAARSYLMSLNGKPAPVIDGLTGEQRFFVGWSQVWRRNYRDEELGRRLLTDPHSPSHYRAMGTPRNIEAFYKAFELKESDKMYLKPEERVKIW
>NC_004347.2|WP_011070788.1|454326_454653_-|DUF2845-domain-containing-protein
MKYYVLLVLWAASLPALATDSMRCKQFVISVGDPLDTVFERCGQPNEVKEYSKPATYRNSAGDIVVDPSKLPIEYAEWTYDFGPTRLMRRIYATEQKVEKIETLGYGH
>NC_004347.2|WP_011070789.1|454705_455359_-|hexitol-phosphatase-HxpB
MTSLSIQAVIFDMDGVLIDSEPLWQRVEYEVLSALGVPVTLETIQQTTGLRIDQCVDYWYHKAPWADYDNAKVSKTIVDKVAEEILQTGEPMPGVQQAMAYCQAKGLKIGLATSSPTVLIDAVLARLKLKGQFMAVESAEALTYGKPHPEVYLNCATALGVDPRYCLAIEDSFNGIIAARAANMQTVAIPAPEQRGETKWIVAHHQLESLFQLNKVL
>NC_004347.2|WP_011070790.1|455780_458378_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEAYRKHVAERAAEGVVPKPLDAHQVAELVKLVQNPPAGEEAFVLDLLENRIPPGVDEAAYVKAAFLDAVAKGTATSPILSAERATELLGTMQGGYNIEPLIAQLDNPALAPLAAKALAHTLLMFDSFHDVVEKMEAGNQFAKQVVEAWANADWYLSRPKLADKVTLTVFKVSGETNTDDLSPAPDAWSRPDIPLHALAMLKNARDGIEPDVAGSVGPIKKLEELKTKGFPLVYVGDVVGTGSSRKSATNSVLWFMGDDIPFVPNKRAGGFCLGGKIAPIFFNTMEDAGALPIELDVSKMEMGDVIDIYPYAGVVKRHGSDEVISEFSLKTDVLLDEVRAGGRIPLIIGRGLTDKARAVLGLPASEVFVRPQDIADNGKGYTLAQKMVGKACGVAGVRPGQYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLTMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLKAIELGMLTVEKKGKVNIFSGRVLEIEGLESLKVEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNITMLKWMIAEGYGDRRTIERRIKGMEEWLANPELMSADADAEYTAVIEIDLNEIKEPILCAPNDPDDAVLLSSVAQTKIDEVFVGSCMTNIGHFRATGKMLDKFAKTLPTRLWIAPPTKMDKDQLTEEGYYGIFGRVGARIEIPGCSLCMGNQARVAEGATVVSTSTRNFPNRLGTGANVYLASAELAAVAALLGRLPTVEEYQEYAKELDATAADTYRYLNFDQIDSYTKKASQVIFQSAV

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Crispr_ID: NC_004347_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004347_3

907715-907822

Unclear

Consensus_repeat	Method
CTGGCATAACCAAGGGAATCAACAGATCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004347_3

>merge|NC_004347|3|907715-907822|CRISPRCasFinder
CTGGCATAACCAAGGGAATCAACAGATCAAGCATGGATGTGGAATTAACTGCTAAGACTTAACGCTGGATGGGGTTGCTGGCATACCCAAGGGAATCAACAGATCAAG

>NC_004347|3|3|907715-907822|CRISPRCasFinder
CTGGCATAACCAAGGGAATCAACAGATCAAG	CATGGATGTGGAATTAACTGCTAAGACTTAACGCTGGATGGGGTTG
CTGGCATACCCAAGGGAATCAACAGATCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004347.2\|WP_007644947.1\|904131_904575_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NC_004347.2\|WP_011071170.1\|910297_910804_+\|TAT-leader-containing-periplasmic-protein	unknown	unknown	unknown
NC_004347.2\|WP_011071171.1\|910850_912452_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|366272
NC_004347.2\|WP_011071176.1\|915982_917095_+\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NC_004347.2\|WP_011071161.1\|901019_901508_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NC_004347.2\|WP_011071158.1\|898428_898950_-\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011071168.1\|908947_909193_-\|YheU-family-protein	unknown	unknown	gnl\|CDD\|377710
NC_004347.2\|WP_011071164.1\|904738_905443_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NC_004347.2\|WP_011071169.1\|909202_910186_-\|hydrolase	unknown	unknown	gnl\|CDD\|182883
NC_004347.2\|WP_011071173.1\|912926_913388_-\|DUF2390-domain-containing-protein	unknown	unknown	gnl\|CDD\|378196
NC_004347.2\|WP_011071174.1\|913423_915337_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NC_004347.2\|WP_011071175.1\|915613_915814_+\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|131496
NC_004347.2\|WP_011071165.1\|905611_906904_+\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
NC_004347.2\|WP_011071160.1\|900168_900963_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NC_004347.2\|WP_011071159.1\|899246_900092_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NC_004347.2\|WP_011071172.1\|912464_912875_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_004347.2\|WP_011071167.1\|907975_908863_-\|phosphoribulokinase	unknown	unknown	gnl\|CDD\|237970
NC_004347.2\|WP_164925827.1\|907092_907602_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NC_004347.2\|WP_164925825.1\|901507_902959_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NC_004347.2\|WP_164925826.1\|903098_903995_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573

Protein	Function_ID	Function_description	E-value
NC_004347.2\|WP_007644947.1\|904131_904575_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	1.37135e-78
NC_004347.2\|WP_011071171.1\|910850_912452_+\|GMC-family-oxidoreductase	gnl\|CDD\|366272	pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of proteins bind FAD as a cofactor.	9.95806e-55
NC_004347.2\|WP_011071176.1\|915982_917095_+\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NC_004347.2\|WP_011071161.1\|901019_901508_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	2.06586e-64
NC_004347.2\|WP_011071168.1\|908947_909193_-\|YheU-family-protein	gnl\|CDD\|377710	pfam06794, UPF0270, Uncharacterized protein family (UPF0270).	5.61306e-18
NC_004347.2\|WP_011071164.1\|904738_905443_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	8.07793e-144
NC_004347.2\|WP_011071169.1\|909202_910186_-\|hydrolase	gnl\|CDD\|182883	PRK10985, PRK10985, putative hydrolase; Provisional.	4.55626e-131
NC_004347.2\|WP_011071173.1\|912926_913388_-\|DUF2390-domain-containing-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	2.25411e-28
NC_004347.2\|WP_011071174.1\|913423_915337_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NC_004347.2\|WP_011071175.1\|915613_915814_+\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|131496	TIGR02443, Hypothetical_protein_yheV., conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.	1.86701e-24
NC_004347.2\|WP_011071165.1\|905611_906904_+\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
NC_004347.2\|WP_011071160.1\|900168_900963_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	2.55712e-172
NC_004347.2\|WP_011071159.1\|899246_900092_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.30402e-166
NC_004347.2\|WP_011071172.1\|912464_912875_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.05556e-38
NC_004347.2\|WP_011071167.1\|907975_908863_-\|phosphoribulokinase	gnl\|CDD\|237970	PRK15453, PRK15453, phosphoribulokinase; Provisional.	0
NC_004347.2\|WP_164925827.1\|907092_907602_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.56094e-12
NC_004347.2\|WP_164925825.1\|901507_902959_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	0
NC_004347.2\|WP_164925826.1\|903098_903995_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	8.20076e-155

>NC_004347.2|WP_164925827.1|907092_907602_+|GNAT-family-N-acetyltransferase
MIIIRKATKADAQACWDIRNAAINKGCAGFYDAGDLIIWTEGELTEQFSRIVDAHFYVAEQSNNVPPLKRVIGMVMLDEPYAQVEALFVSPDAMGLGVGKSLLQFIETKAFNLGIAQLRLESTLNAVGFYRHCGFGGEGLEEDSIYCSPRGIALECMVMYKNLGRPLAC
>NC_004347.2|WP_011071165.1|905611_906904_+|aminopeptidase-PepB
MSELKVTEVMSVALTKDTPAAHWGKADVTFAAEGALVHLSGGDELRQIQMAARKLRNQGISNVALSGSLWDLNSQWVFAQGFATAKPGYKIQWCGDAEVQAELQRRIEVATFARQLINETPENLSPVKLAQQAAKWLADIGGAKVSYRIIEGEALLAEQWIGIHAVGRGSERPPAMLELDFNPLAADAPVSVALVGKGITFDSGGYSIKASEGMLGMKCDMGGAATVTAALGLAIKSGLNKRVKLFLCCAENLISGRAYKLGDILTYKNGVTVEVVNTDAEGRLVLADGLQAASATGAPFIIDAATLTGAAVMAVGSNYNAIFSPQVDVLQLAQQKASTVAERVWPLPLDPWHKEMCPSSYADTANSRPVKGGGAGGASNAAGFLWRFVSPEAKWLHVDLAAAFEDSASALWGAGATTHGVLTISELIKG
>NC_004347.2|WP_011071164.1|904738_905443_-|DNA/RNA-nuclease-SfsA
MHFTPALKPGKLLKRYKRFLADVQLEDGSEITVHCPNTGSMRNCLFPGETLWFSTSSNTKRKYAHTWELMTTPTGALIGIHSGNANALVEEALNKGIITELTGYDSLRREVKYGDENSRIDILLECAQKTACYIEVKSCTLQENGQGYFPDAVSLRGQKHLRELMHMASLGHRAVLLFVVQHTDIMSVAPAAHIDPEYANLLKKSVLSGVEVLAYRCEISPSEIHLAQSCPVRV
>NC_004347.2|WP_007644947.1|904131_904575_-|RNA-polymerase-binding-protein-DksA
MPEGTKKLGVLAIAGVSPYQEKPGEEYMNAKQLGHFKTILEAWRNQLREEVDRTLSHMQDEAANFPDPVDRAAQEEEFSLELRARDRERKLIKKIEKTLQKIEEDDFGFCDSCGIEIGIRRLEARPTADQCIDCKTLAEIKEKQMAG
>NC_004347.2|WP_164925826.1|903098_903995_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MATLTTAISPQGPYVGRFAPSPSGALHFGSLVAALGSYLRARSLGGKWLIRIEDIDPPREVKGAADDILRTLEAYGFEWDDTVLYQSARTDAYQAKLDQLLAQDDAYFCQCSRKQIQAMGGIYDGRCHQLATPHQSGAIRLVNRAQVAEFTDNLMGKVVVDHDFATEDFIIKRSDGLYAYQLAVVLDDAHQGISEVVRGCDLIEASCRQLSLYQSLGLTAPQWLHLPLACLTPGFKLSKQNHAQAIDKQHPQASLNAALTFLGQSTVEPTSAAQMLAQAVAQFELTAVPKQREIILTA
>NC_004347.2|WP_164925825.1|901507_902959_-|polynucleotide-adenylyltransferase-PcnB
MPRCPIFRRISQFCKQLFEDAPKTTAPTPAQIEPQTPELTSGGLSLALVPRDAHSISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLFAPLFPQVDALLKEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSFFYAAILWYPLRQRAEDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFERSQGTRAFKLLEHPKFRAAYDLLLLRGEVEGGNLAKSAAWWQQFVEADETERLTIARSGNKASGNRNRNTPQRRRRRPSGAKAKAEE
>NC_004347.2|WP_011071161.1|901019_901508_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTQVFVALGANLEDPKAQLDNALMALSSLAENQSLKVSPYYHSTPMGEVVQPDYINAVASFETKLTPLALLDALQHIENTQGRVRKERWGPRTLDLDLLLYGDAIIDEPRLKVPHYGMKERSFVLVPLAAIAPDLVLPCKTPLQSLISEKFLAELQLLGNDH
>NC_004347.2|WP_011071160.1|900168_900963_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKVTSSTLLKYKQEGRKFTALTAYDASFASAFDGEGIDVLLVGDSLGMVLQGHDDTLPVTTADIAYHTRCVRRGIERSLLIADMPFMSYATPEQAMENATTLMQAGANMVKLEGGHWLLETVTKLTERGIPVCAHLGLTPQSVNVFGGFKVQGRDAENAQRIIDEAKALEAAGAQLLVVECIPASLATAITQALTIPVIGIGAGATTDGQILVMHDVLGISSGYIPRFSKNYLKQTGEIRSAVRAYIEEVANGSFPSAEHTFN
>NC_004347.2|WP_011071159.1|899246_900092_-|pantoate--beta-alanine-ligase
MITSAHIDDIRTQVRAWRAKGETVAFVPTMGNLHQGHITLVKEAAKKCDHVVASIFVNPMQFGQNEDLDAYPRTLEADSQALTAAGAELLFTPTPAIIYPKGLAQQTYVEVPGISDVLCGASRPGHFRGVATIVCKLFNIVQPDIAFFGNKDYQQLLVIRTMVEDLSLPIEIIGIDTIREASGLAMSSRNGYLTAQEKAAAPALKKAIDAMAQGIKQGISIEQVTEEAKASLTAAGFTPDYLEVRHADTLAKAETQDKALVILAAAYLGKARLIDNLRFDR
>NC_004347.2|WP_011071158.1|898428_898950_-|hypothetical-protein
MARLIVTLICVTLPTAALANTVYKCRKDDKVVFSQTACPQEYSQHKIEYQLGITTEIDSDKREDKVDPLHALLNSQTLSKDKLLQLLDGELYRLKQENSYFDILRASELQKLERQRYWQNKEKTDPDYLSQVNKINAHFDELTSINRQLMQQLSERKTQIGAETQPKKLSDKH
>NC_004347.2|WP_011071167.1|907975_908863_-|phosphoribulokinase
MSAKHPIIAVTGSSGAGTTTTTTAFSHIFRQLGINAAFVEGDSFHHYTRAEMEVMIRKSQAENRNLSYFGPEANNFARLEQCFRDYGATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPLPENTDMLYYEGLHGGVVTGDANVAQHVDLLIGMVPIVNLEWIQKIIRDTSERGHSREKVMGSIVRSMDDYIKHMTPQFSRTHINFQRVPTVDTSNPFSAKDIPSLDESFVVIRFRGINNVDFPYYLSMIQGSFMSRVNTLVVPGGKMSLAMELILTPLIKDLMEKRQQLNSPQAN
>NC_004347.2|WP_011071168.1|908947_909193_-|YheU-family-protein
MLIPYDALLQLPKETLANLIREYLLGQVEDGSFTSLDEQELSGAIVQCQQALKQGKLVLEYSEEEESFAIRHADQVAKRQD
>NC_004347.2|WP_011071169.1|909202_910186_-|hydrolase
MPNAFTPPWWAKSPHVQTILPVFTKVAKPVLERQRLELPDGDFIDLDWQAPPKVGKPIVVIIHGLEGSAQSHYARRILQACKTQGLAAVVHHHRSCSGEANRLARSYHSGDTDDLQFSLSLLQQTYPQSPLLAVGYSLGGNVLTKYQGEYQDQSLLTRAVVVSAPLQLSACAKRLEHGFSTVYQSHLVKQLQHKVNQKLTAPDLAGTMSLTPKQVANLNTFYDFDDKVTAPLHGFLGVEDYYTRASGLPYVNRITKPTLILHALDDPFMTDEVIPHPSQISEHVEYELHAHGGHVGFIEGGTPWKPRYYLERRILDFLLANDASSAP
>NC_004347.2|WP_011071170.1|910297_910804_+|TAT-leader-containing-periplasmic-protein
MNRRTFLLGAFAGTAAIALGVNLYSPEFSLPDEGEGKDYRLLFSVLLPVMLDGALPDVATHKAAAQNRTLDAIKQSIAVLPDEQQAELFELLDMLENRLGLLLLTSSMTPLLMRSPAELTQMLESWRHSYFTLLQTAYLGLRELVMASYYACPEHWSRLHYAKPELFK
>NC_004347.2|WP_011071171.1|910850_912452_+|GMC-family-oxidoreductase
MAIVDPIVTGLNAGWLHTDASQLQANQQFEADVVIVGTGAGGGVAAEILTQAGLSVIMIEAGPLKSSSDFNMEERVAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTINWTTSIRTPKEALAFWAQHKSVAGLDPEALAPWFDQMEQRLNIHEWNYEPNRNNGALKQGCINLGWDYTVIKRNVAGCWNTGYCGMGCPVNAKQSMLVTTIPSALEKGAQLISRAKVVKIEHHNGQVFALKAQALDVNLRPTAVELLFKAKHYILSAGAIHTPTLMMRSEVPDPHQLLGKRTFLHPTVLSGGVFADTINAHSGAPQSIYSDEFVWKNGADGELGYKLEVPPVHPILIASKTIGYGVSHAELMAQFNQLQVTIALIRDGYHPDSQGGQVHLTPTGFSLDYPLTDAFWRAVRRAYASMAELQFSAGALKVLPISDGMPYLSSWKEAKESIAQMDLAPLKTVVASAHVMGGCPLGEDEKLSMVNSYGQSHYLNNLSVMDGSIFPTSLGANPQLSIYGITARNATALAQKLKDGREPQ
>NC_004347.2|WP_011071172.1|912464_912875_+|GFA-family-protein
MQPIEFLEGGCLCGAIRYRIEGNPFDADYCHCRMCQKSIGAAFGAWMDFNVSQVTWLKGNVTEFASSDFVRRGFCAQCGCSLTYRHTEYPDYLTLTIASFDDPNLVQPNYHIYTEQQLSWLKIEDNCQRYPQARTK
>NC_004347.2|WP_011071173.1|912926_913388_-|DUF2390-domain-containing-protein
MSNVTPLDCQIWHWCDMSYGQNKQLCLELQDNCQVNVNLLLLAQYLDLTSDVAGPREYSTEQWQRLVRAVWEWDEKFLTPYRRLRRLAKASLNEAEYQQMLDVELMMERKAQRTILNTVNGLSPKGNQTNLVSYLTLCGLSAADVNSLSLIAP
>NC_004347.2|WP_011071174.1|913423_915337_-|ABC-transporter-ATP-binding-protein
MISINQAQLIRGSKTLLDEASLTIYPGHKVGLVGANGTGKSSLLALIMGHLSLDKGEFSMPSGWQIASVAQETPALDMSALEYVLDGDKEYRQLEADLHIAQEHNDGHAIATLHGKIDAIGGYAIRARAGALLAGLGFSEAEQNNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTMYWLEGWIKSYQGTLILISHDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIRAERMAQQQVAFERQQKERAHMQSFVDRFRYKASKAKQAQSRLKALERMTELLPSQADSPFYMEFRPPEALPNPLIKMEQVAVGYGDKQILSKVHLNLVPGARIGLLGRNGAGKSTLIKLLSGQLSPMTGLYEPNPGLNIGYFAQHQIEFLRLDDTPLQHLVRLAPNAREQELRNFLGGFGFNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEGAMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGDLDDYHQWLLDAAKAASANQAANSDDTKPAVDKKQQKRLEAELRQKVSPLKRKQAKLEIDQQKLSERLAELEHLLADGELYDQDNKAKLTSVLSERTSLTQTLEESEMQWLELQEEIDTMELELMGQ
>NC_004347.2|WP_011071175.1|915613_915814_+|YheV-family-putative-metal-binding-protein
MTTKIKKRFVAGAKCPKCGAKDSILLFKENGIETVECTDCDYREQQTDIKVTEKATGAVIGVFKPD
>NC_004347.2|WP_011071176.1|915982_917095_+|agmatine-deiminase
MTNVNVDVTPLTTKPSQDGFYMPAEWAAQQAVWMIWPYRPDNWRAAGAYAQATFAKVVDAIGAATPVYMGVPKAFLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVNAEGECRGVDWGFNAWGGHNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECLLNANRNPELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDGHIDNMCCFARPGEVILHWTDDESDPQYPRSKAALEVLQNTVDAQGRKLKIHLLPQPGPLYCSEEESKGVTEGTGVPRTAGERLAGSYVNFLITNHRIVFPLLDPATDDIAAQKLQEIFPEHEIVGVPAREILLGGGNIHCITQQIPAGK

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Crispr_ID: NC_004347_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004347_4

1951292-1951416

Orphan

Consensus_repeat	Method
CGCCATATTTCATGGAAAGCCATCAGCAATAATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004347_4

>merge|NC_004347|4|1951292-1951416|CRISPRCasFinder
CGCCATATTTCATGGAAAGCCATCAGCAATAATGGCTTTTTTGTTTACCGAATTTGAACCCGGGTTCCTCATTCTAAGCGCAGCTCCTCCGCCATATTTCATGGAAAGCCATCAGCAATGATGGC

>NC_004347|4|4|1951292-1951416|CRISPRCasFinder
CGCCATATTTCATGGAAAGCCATCAGCAATAATGGC	TTTTTTGTTTACCGAATTTGAACCCGGGTTCCTCATTCTAAGCGCAGCTCCTC
CGCCATATTTCATGGAAAGCCATCAGCAATGATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_004347.2\|WP_011071972.1\|1951807_1952452_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NC_004347.2\|WP_011071980.1\|1959861_1960701_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NC_004347.2\|WP_011071977.1\|1957197_1958106_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_004347.2\|WP_011071970.1\|1947499_1948015_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
NC_004347.2\|WP_011071975.1\|1955967_1956243_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NC_004347.2\|WP_011071969.1\|1947214_1947391_+\|ribosome-modulation-factor	unknown	unknown	gnl\|CDD\|184747
NC_004347.2\|WP_011071978.1\|1958102_1958933_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_004347.2\|WP_011071971.1\|1948088_1949822_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223994
NC_004347.2\|WP_011071968.1\|1945194_1947027_+\|DUF3466-family-protein	unknown	unknown	gnl\|CDD\|378770
NC_004347.2\|WP_011071964.1\|1938828_1939113_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NC_004347.2\|WP_164925675.1\|1956433_1957153_-\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_164925673.1\|1938169_1938703_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240271
NC_004347.2\|WP_011071966.1\|1942996_1943242_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_004347.2\|WP_011071979.1\|1959026_1959695_-\|DUF480-domain-containing-protein	unknown	unknown	gnl\|CDD\|183048
NC_004347.2\|WP_011071965.1\|1940874_1943010_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_004347.2\|WP_011071981.1\|1961177_1961330_+\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_164925674.1\|1950158_1950758_+\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011071973.1\|1952558_1954388_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_004347.2\|WP_011071967.1\|1943243_1945166_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236861
NC_004347.2\|WP_011071974.1\|1954435_1954984_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763

Protein	Function_ID	Function_description	E-value
NC_004347.2\|WP_011071972.1\|1951807_1952452_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	5.24964e-161
NC_004347.2\|WP_011071980.1\|1959861_1960701_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.9247e-81
NC_004347.2\|WP_011071977.1\|1957197_1958106_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.0951e-77
NC_004347.2\|WP_011071975.1\|1955967_1956243_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.74088e-28
NC_004347.2\|WP_011071969.1\|1947214_1947391_+\|ribosome-modulation-factor	gnl\|CDD\|184747	PRK14563, PRK14563, ribosome modulation factor; Provisional.	2.60865e-29
NC_004347.2\|WP_011071978.1\|1958102_1958933_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	2.65745e-05
NC_004347.2\|WP_011071971.1\|1948088_1949822_-\|AAA-family-ATPase	gnl\|CDD\|223994	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].	1.74501e-113
NC_004347.2\|WP_011071968.1\|1945194_1947027_+\|DUF3466-family-protein	gnl\|CDD\|378770	pfam11949, DUF3466, Protein of unknown function (DUF3466). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 564 to 612 amino acids in length.	0
NC_004347.2\|WP_011071964.1\|1938828_1939113_-\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	1.41423e-18
NC_004347.2\|WP_164925673.1\|1938169_1938703_-\|hypothetical-protein	gnl\|CDD\|240271	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.	0.00397946
NC_004347.2\|WP_011071966.1\|1942996_1943242_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	4.29494e-10
NC_004347.2\|WP_011071979.1\|1959026_1959695_-\|DUF480-domain-containing-protein	gnl\|CDD\|183048	PRK11239, PRK11239, hypothetical protein; Provisional.	9.7495e-94
NC_004347.2\|WP_011071965.1\|1940874_1943010_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_004347.2\|WP_011071970.1\|1947499_1948015_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.64034e-126
NC_004347.2\|WP_011071973.1\|1952558_1954388_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_004347.2\|WP_011071967.1\|1943243_1945166_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NC_004347.2\|WP_011071974.1\|1954435_1954984_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	2.98353e-72

>NC_004347.2|WP_164925674.1|1950158_1950758_+|hypothetical-protein
MMAFLFTEFEPMVPYSKRSSCAMFHGKPSAMMAFLFTEFEPGFLILSAAPAPYFTERPSAMIAFLFTEFEPRVPYSKRSSCAMFHGKPSAMMAFLFTEFEPGFLILSAALSPYFTERPSAMMAFLFAEFEPGVPYSKRSSCAMFHGRPSAMMAFLFTEFEPGFLILSAAPLPYSVKQAAKHLAACLHFESVAFDVGFDY
>NC_004347.2|WP_011071971.1|1948088_1949822_-|AAA-family-ATPase
MNSLLIPSSSLAPEFNLPVLPQLPTGFKALLLGQERVLDAFKLHNAIADQQLYLADFPGIDRQLMMKALMETLEPLPAAYLVAKRPEDNAIQFHWQYEAPQDNQGSIAEKHVSYRYLSGNIRRSDLLGRMVQSGNSSKYQAGALAECHYVFICAESLWKREGLWDLLMQILTQKEYQISHNLSPIPLNCKIILIGAGLIYSQIRSEDWQFQRHFNLLAELAGELDLTRFKEAQYASWLQTVAQNVDATLEQSSLAPLFRHSARLTEHQRRLSLSMLDLAQLMAQAKVYRGKSTINAASIERALSQANYRHNSSEEFSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHCYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCERRGLTGKQGVIMPKSNMLQLNLHSKVITAVGKGLFHIYAIEHMDEAVELLMQMPAGVADEDNDFPAESLYGLVQQRLDKLAGNGEEEIGLITRLLAKLGFFRH
>NC_004347.2|WP_011071970.1|1947499_1948015_-|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MNKANSFNKEELIACGHGKLFGPNSPRLPVDNMLMIDRIITINDNGGEFGKGEIVAELDIKPELWFFDCHFITDPVMPGCLGLDAMWQLVGFYLGWEGAEGKGRALGVGEVKFTGQVLPGAKKVTYKLNIKRTIHRKLVMGIADAILEVDGRQIYSATDLKVGVFSDTSTF
>NC_004347.2|WP_011071969.1|1947214_1947391_+|ribosome-modulation-factor
MKRQKRDRLDRAFSKGFQAGIGGRSKELCPYANLDSRSQWLGGWREGVDGRVNGLFNK
>NC_004347.2|WP_011071968.1|1945194_1947027_+|DUF3466-family-protein
MKSKLDKALSLVALGVLGVLHSAHAAPVYEIVNIENYDLQRTGTLEGTRNGYALGINANDELVGIAKGKKKLSTSDVEGGVIDVEDGIAPEETITYSITAAIVANNFAFIAAQNGAAGAWLPTFDSINGTTPPSDTSVVNSVDTFYYDINDAGLKVGSMTAPEKKTENTATTDNTTDYWYYRDYEYRGVAKVGGTEIPLPPPYTQYVKDDKTVQLGGWSAATAVNNNNLVVGYASTDISKYGADRVAYCLSTDNTLPLDVCIQREQYPNDQGTRNIQYQTRAFIWQLDNGNASGTALPLGLTPASDNTLTFTAQAMGVNNDGVVAGRSHVYRYGDTGRLHQDAAYWSKNAEGNYQYHWIPMADAVSSSIAYDVNDNGIVVGSYRSYISGYLRDKFFYFDINTPDVPYVTPNDFATTTTDLSSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYEKSTGEFSNLNTLLTCESKGFEKGADGNWTRHKVEVQDGTGKVLSYNSDIQVVEASSINEDGTIVGTAFIRKPSYQFDKNGNIIVGENGLPLFELSGNGEPVTAYVPRMVVLKPATNGQACTVDDSTDTGNYERQGAASLAWLLALPLVWLRRRVR
>NC_004347.2|WP_011071967.1|1943243_1945166_+|ABC-transporter-ATP-binding-protein
MSLVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNIDGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQMQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDLLLLDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQAYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERLNRQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCGKSTLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITINGQDRHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLELLESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQGAKFYSEEPSQTNTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVASPDFYSQTQDKINQVLSLLADKEKQLEVCFERWEELESLK
>NC_004347.2|WP_011071966.1|1942996_1943242_+|glutaredoxin-family-protein
MQINNALQASYVLYHTEGCHLCELAAALLNAAEVRYTAIDICDDETLAERYGVSIPVVKAQDERCLCWPFDATQLQEFLGA
>NC_004347.2|WP_011071965.1|1940874_1943010_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MLNFFAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLVIYKGPCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRFRDDGDARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAANMLVRSGWKAAPTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFEHWRRHDKATWHEIVEEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNVEPPAAEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALKLKADKQMKMFNGALECAFNLYTLHAQSTRRDTPVLPEGVDIADIAPAFANRIKKNAKQFEKWAQKEGIDSYRLYDADIPEYNVAVDKYLDYVVVQEYMAPASIPEAVTKRRLSDVLLALPAAIGVDPHKIIMKTRERQKGTNQYQKLDERKLELITTEYGAKFKLNLTGYLDTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKENFALNNLSGKQYEFVQADCLQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHVNLLGMLIKLLSPNGELVFSNNKRKFKMDTETLTKMKIKVQNIDDMTLPLDYKRNPHIHNTWLITHADK
>NC_004347.2|WP_011071964.1|1938828_1939113_-|J-domain-containing-protein
MINHFSVLGIKPSAKEDDIKKAYRRLSNKYHPDKLLGASDEEKEQASQQLERVKKAYEVLSDPKLRNAFIRDFNNVIVTDPNSAMRELWDQFYP
>NC_004347.2|WP_164925673.1|1938169_1938703_-|hypothetical-protein
MAKKLNISRINELKTNAYDNIESYDDPDTPKALEQFTSQIKKVLQADPKMLESVPEYLPVALYGRVKFPSDAKLKWAHWINTATQPDWDEFKVTIGFNNADLPLVLAVRAYSEDLLIESCAVLYLLENQGKATPAPKRSADDDFEDEDSDYADYSDDDDDEGEEEDGYYDHYDDEDR
>NC_004347.2|WP_011071972.1|1951807_1952452_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MISIYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVQWARQNEADVILMDMNMPVMGGLEATRKILRYQPHAKIIVLTVHTEDPFPSKVMQAGASGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADENPFKALSERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKMLDAGHF
>NC_004347.2|WP_011071973.1|1952558_1954388_+|excinuclease-ABC-subunit-UvrC
MSTGFNAQSFLRTVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHEHPRLAYHRGPQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITNATNAVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEGITPGDDYAAMKQAISRRFDKIDASGKIPDILFIDGGLGQLRIAQQIVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESHRFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISIEMAQTIHDALRG
>NC_004347.2|WP_011071974.1|1954435_1954984_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNLPIALTLFRLFLLPIFVVLFYLPYSWTPFVAAFVFWLAALTDALDGYAARKLKQLTRFGAFLDPVADKLMVITALVLLVDQYADIWLTLPALFMIGREIVISALREWMAELGKRGTVAVSWIGKYKTAAQMVAIIGLIWQYNPLMIQAAFVLLYIAAVLTFWSKMSYILAAWKDLTAE
>NC_004347.2|WP_011071975.1|1955967_1956243_-|HU-family-DNA-binding-protein
MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKSGRNPQTGEAIEIAGFNQPSFKAATALKQAINE
>NC_004347.2|WP_164925675.1|1956433_1957153_-|hypothetical-protein
MYLSQGLWIVVILITMGALAACAPVPRDYYKPFYEDGEVVSTGCGGSGPSNTIRIPLVSGLNVELKTFSSKRIRPESIHIFYLYSKVSAPQDISFQLADEYVIVKDNNSVNSWKLPINYLSTNKNNYLGQSDSIIEREFNGFSDEEINRIEASDRKSGYIQVPALSEIVGKTYFYEVGSGRKRYFNTGMSFSIQTSEITSELENFSIIYPEIIINGVKVNLGEIRFKRVRYIGIDPLNC
>NC_004347.2|WP_011071977.1|1957197_1958106_-|ABC-transporter-ATP-binding-protein
MILVQCQGLSKHYGNKKALNNVSLTLEAGAPIALVGPNGAGKTTLFSLLCGYLTPSAGTVRILGEAPNSPTLLGQIAALPQDATLDPNLTIISQLSFFARLQGMDSKQANQEALRVLNLVDLAEVAQQKPPSLSHGMSKRVAIAQALIGSPKLVLLDEPTAGLDPANAKKIRELVRILSPTTTFVISSHNLDELEKLCDQVLYLDKGELSQSISMRSSNSGSDYLTLTMQSCDSEALIQAVGQIAGVVNITSKQAHVFVIQLDDTANRHYEFETALLALFKQQHWQYKMLLKGRTLEETLFS
>NC_004347.2|WP_011071978.1|1958102_1958933_-|ABC-transporter-permease-subunit
MTPNAPSTFNNMLLIAVFECRKFLFNLRGMIALIAFALVWGMLLLYPIQGASTLLMQPNIKDLIDGLFGNNALNVLFDWPVAEMAIFWCFALYLFPMFSILIAADQFSSDKTRGTLRFYTIRTSKDSLLFGRFLGQILIQGLLILLTILATIALALSRDASLLLPAISSGALVGVNLLIVILPFTAVMTLLSLYASTARQAMVLATILWTVVSIALLILGNESRLFEGLQWLLPGAQLSNMINTNGLNSLAYAPIPLLQTAIALFLGRIYFQRSQL
>NC_004347.2|WP_011071979.1|1959026_1959695_-|DUF480-domain-containing-protein
MELTLHEARVIGCLLEKEVTTPEQYPLSLNALTLACNQKTSREPVLELTEAQVQDALDSLNKKRLISEQSGFGSRVVKYKHRFCNTEFSELQLSTAAVAIVCLLLLRGPQTPGELRTRSNRLHDFKDVLEVEACIKQLMERDKPVLTQLPREPGKRECRYTELFSQGSEQVSATSLSADSPSADSNSLNAQDRQQLEARVTQLEGQVAELKDKLESLIASLS
>NC_004347.2|WP_011071980.1|1959861_1960701_-|GntR-family-transcriptional-regulator
MVQIGKTCKLEVVKQVSFGVYLNAHEFGQVLLPNKATPKDCQVGDWLEVFLYLDSEDIVIATTRKPLAQVGEFAYLKAVATGPFGAFLDWGLDKDLLLPFGEQHKPIEEGRSYLVYVHVNRADERIVASSKIDKFLDKTPAHYEVGQQVDLFIGGTTDLGYKAIINHAHWGVIYQNEVFQKLRFGQRLKGFIKQVRRDSKIDLVLQQGSKQELDKNAHIILVKLKQAGGFLPLTDKTDAEVIYEQLGMSKKAFKKSIGGLFKASKLSIDDDGLRLTEAD
>NC_004347.2|WP_011071981.1|1961177_1961330_+|hypothetical-protein
MHKHPFFALCLKASQCQRSIVVPYDDTSLKHLTLIRINSGREEANSPLLQ

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Crispr_ID: NC_004347_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004347_5

4223842-4223938

Orphan

Consensus_repeat	Method
GGTGAAGCCCCACGACTTTGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004347_5

>merge|NC_004347|5|4223842-4223938|CRISPRCasFinder
GGTGAAGCCCCACGACTTTGATTCACCTCGGCCATGAGGCCGCAATGACGATACATCTACATAAACAAGTGTGAGATGAAGCCCCACGACTTTGATT

>NC_004347|5|5|4223842-4223938|CRISPRCasFinder
GGTGAAGCCCCACGACTTTGATT	CACCTCGGCCATGAGGCCGCAATGACGATACATCTACATAAACAAGTGTGA
GATGAAGCCCCACGACTTTGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_004347.2\|WP_164925916.1\|4228109_4228343_-\|ribosome-alternative-rescue-factor-ArfA	unknown	unknown	gnl\|CDD\|367714
NC_004347.2\|WP_011073786.1\|4233406_4233940_+\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NC_004347.2\|WP_011073785.1\|4231901_4233245_-\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NC_004347.2\|WP_011073770.1\|4212635_4212950_+\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NC_004347.2\|WP_164925779.1\|4221141_4221288_-\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011073783.1\|4228631_4229477_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NC_004347.2\|WP_011073788.1\|4236503_4237835_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_004347.2\|WP_164925780.1\|4229642_4231784_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273801
NC_004347.2\|WP_164925915.1\|4211250_4212414_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|131135
NC_004347.2\|WP_011073774.1\|4215467_4217750_-\|thiosulfate-reductase-PhsA	unknown	unknown	gnl\|CDD\|237973
NC_004347.2\|WP_011073772.1\|4213941_4214886_-\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|274450
NC_004347.2\|WP_011073773.1\|4214888_4215455_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NC_004347.2\|WP_011073777.1\|4219702_4220806_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|184420
NC_004347.2\|WP_011073780.1\|4225096_4225810_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
NC_004347.2\|WP_011073775.1\|4218394_4219048_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|372644
NC_004347.2\|WP_011073778.1\|4221453_4223562_+\|hypothetical-protein	unknown	unknown	unknown
NC_004347.2\|WP_011073787.1\|4233968_4236449_+\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|376772
NC_004347.2\|WP_011073771.1\|4213046_4213790_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_004347.2\|WP_011073779.1\|4224046_4224832_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_004347.2\|WP_011073781.1\|4226201_4227647_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838

Protein	Function_ID	Function_description	E-value
NC_004347.2\|WP_164925916.1\|4228109_4228343_-\|ribosome-alternative-rescue-factor-ArfA	gnl\|CDD\|367714	pfam03889, DUF331, Domain of unknown function. Members of this family are uncharacterized proteins from a number of bacterial species. The proteins range in size from 50-70 residues.	9.28121e-22
NC_004347.2\|WP_011073785.1\|4231901_4233245_-\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	0
NC_004347.2\|WP_011073770.1\|4212635_4212950_+\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	6.36889e-76
NC_004347.2\|WP_011073772.1\|4213941_4214886_-\|polysulfide-reductase-NrfD	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	1.05325e-81
NC_004347.2\|WP_011073783.1\|4228631_4229477_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.69308e-11
NC_004347.2\|WP_164925780.1\|4229642_4231784_+\|TonB-dependent-receptor	gnl\|CDD\|273801	TIGR01778, TonB-copper, TonB-dependent copper receptor. This model represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterized members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa and NosA from Pseudomonas stutzeri which is responsible for providing copper for the copper-containing N2O reducatse. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.39321e-42
NC_004347.2\|WP_164925915.1\|4211250_4212414_-\|cystathionine-gamma-synthase	gnl\|CDD\|131135	TIGR02080, Cystathionine_gamma-synthase, O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. [Amino acid biosynthesis, Aspartate family].	0
NC_004347.2\|WP_011073774.1\|4215467_4217750_-\|thiosulfate-reductase-PhsA	gnl\|CDD\|237973	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.	0
NC_004347.2\|WP_011073780.1\|4225096_4225810_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	6.40402e-118
NC_004347.2\|WP_011073773.1\|4214888_4215455_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.89441e-90
NC_004347.2\|WP_011073777.1\|4219702_4220806_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|184420	PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NC_004347.2\|WP_011073781.1\|4226201_4227647_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NC_004347.2\|WP_011073775.1\|4218394_4219048_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|372644	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies).	3.15823e-12
NC_004347.2\|WP_011073786.1\|4233406_4233940_+\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	1.03342e-74
NC_004347.2\|WP_011073787.1\|4233968_4236449_+\|Ig-like-domain-containing-protein	gnl\|CDD\|376772	pfam02369, Big_1, Bacterial Ig-like domain (group 1). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.	9.16995e-05
NC_004347.2\|WP_011073771.1\|4213046_4213790_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.27036e-08
NC_004347.2\|WP_011073779.1\|4224046_4224832_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.43768e-15
NC_004347.2\|WP_011073788.1\|4236503_4237835_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.42796e-45

>NC_004347.2|WP_011073778.1|4221453_4223562_+|hypothetical-protein
MNKRDEIHLLSSLAVFSQTYKNNTDIIDVIAAFIEATIIKRALKSFTCPELTAHVNSEFSFTFPEGVISTSLKRISHLERATKPKTHYIYTPDEKQQESNSKMLLEISNAEAKNKALLVDLEGYISSKIKRELSESEVDDLIHSFTSFIQDTANGRKFSEHISAFIIENSEKKDFIEHVQEIKDGSIIESEIRFNNNISETGSWKNEITILLGTEIIFHLAGYNGLVFKKITDEFLSYISEINSGRKEKIKLRYFNETLDGINSYFSKADDIVAGKDKALPHVSAMVHLTNGCESRFDLLKKKKELIRLLEVKGIKPLEDESFFSEENHKYNIINSSIINEIQSDPRNELMENHINELNYINILRKGDSSRFDRITHILVTENYKTLNIAWSSSLKEKGEVPLATNLNFMISKFWFKLNRGFGQQGSITSFDVITKAKIVLSSKVNESVSKRYTEFQKNYSNGTLDKETATAILAECRSDTRKPEEIKAVETEQMLSLIEDSSIDAYLRNKNHLEQINSLRESENAKLMKKLVHERERNDINIKTLIESKLTTKTLYQEKKQSTTQQLETFESKRTDINKTYYRSKKTLKILTMTLIITVIPSIYYLLSEDIEKITNLIKISGATTLSTFIIWYFGDMIKIENLRNTISKFDNIHLNKKFEKKGLTDEIIKQLNDEISKLDNDISNIDQDIKILELELEEQN
>NC_004347.2|WP_164925779.1|4221141_4221288_-|hypothetical-protein
MLNFLKVMFGITLFALHYSQATPKPQKYTFPCEVAAGRWNKLRESGHG
>NC_004347.2|WP_011073777.1|4219702_4220806_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MSLADSVLAVNNDLPIRTDKSVHSGKVRSVYWLTDADSRRLIKTKGYNVPEDTPLAIMVISDRISAFDCIFHGEGGLKGIPGKGAALNAISNHWFKLFAENGLADSHILDIPHPFVWIVQKARPIKVEAICRQYITGSMWRAYSKGERVFCGITLPEGLEKDQKLPELLITPSTKGILTGIPGVPAQDDVNISRSDIEANYQAFGFEKVEDIDLYEKLLKDGFKVISKALADLDQVFVDTKFEFGYVTDQDGNSKLIYMDEVGTPDSSRIWDGAAYRDGKILENSKEGFRQFLLNHFPDPDILLNKDRMPEREALARDNALPLEAMMQVSRTYTGIAEKVTGAAIPLPANPKADIIKILREEYDLIV
>NC_004347.2|WP_011073775.1|4218394_4219048_-|pentapeptide-repeat-containing-protein
MTTDANTSANITAQTTIVQRVSLRGRHFFAQQFIGLDETQAHWQDLEFEECEFHDCQFSDSTFRQCKFIDCRFVGCNLSLVKVSLSHFNGVSFEECKLVGVDWTRASWPRVAFAAPFTFKACILNDSSFMGIKLDEMVLEACKVHDVDFREGSFNRANFTFSDFRHSLFGRTELLEADFSEATDYDIDIFNNKIKGAKFSRDEAIRLLNGLDITLVD
>NC_004347.2|WP_011073774.1|4215467_4217750_-|thiosulfate-reductase-PhsA
MIELNRRTFLKGAGASGATCALASLLPGSLAALESKQLKGMGKEIASICEMCSTRCPISARVIEGKNVFISGNKAAKSFGGKVCARGGAGHSLLYDPQRIVKPLKRVGERGEGKWAEISWDEAYQLIADNLTKIKQAHGPEAVAFSSKSGSQEKHLFHLATAFGSPNTFTHASTCPGGYEIAAKAMFGTKVKRDLSNSKYIINFGHNLYEGINMSETRGMMAAQMDKGAKLVVFEPRFSIVADKADEWYAIRPGTDVAVALALCHVLIEENLYDKAFVERYVEGFDAFAAEVKAYTPEWAETISDVPAKDIRRIVREYAAKAPHAVVDFGHRATFTTEEFEMRRALYAANILIGNIERKGGIYLGQKPGDYNKLAGEDVAPVLGKPGVKDMPKPAAKRIDQVEEQYAMMWSAGGIYQTVLDATLSAVPYQLHGWVMSRTNPMQTMTDRARVVEALKKLDFVAVCDVYISETAAYADVILPESTYLERDEEIADKSGKNPAYYVRQRVVETLSDTRPSWQIFKDIGHKLGLSEFYPWENMETLQLLQVNRDTELLRRIKDEGFVSFGKPIMLCEPKMVAEFTKAYANAKPADEDGTYGSLLSFKTPSGKIELTSAKVEAMAPGRGVIKFREVQLKKPNELYFIQGKVAVHTNGATHNVPMLANLMSDNAVWVHPVTAGKLGISNGDPIRLTSSVGTEEGHALVTPGIRPDTVFAYMGFGSKNKELVRATGKGIHCGNLLPHVTAPVCGMTVHTTGVTLAKR
>NC_004347.2|WP_011073773.1|4214888_4215455_-|4Fe-4S-dicluster-domain-containing-protein
MTKRYVMVHDENKCIGCQACNVACRSENGVPEGVTRLQVRVEGPYGEMPNLHFKYHRVSCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPETKVADKCNFCKDTRLARGEEPACVTVCPTDALVFGDANDPQSEVATLLNTKITYQDKTHLGTKPRVYRVPTKRGGI
>NC_004347.2|WP_011073772.1|4213941_4214886_-|polysulfide-reductase-NrfD
MNNTWGDMAQYDPVTWHWVIAVYLFMAGLSAGSLLIGIGLRWFNQEQTQVESNILKAAAIIGPVAISLGLACLVFDLTKPFHFWLILINYNFQSVMAIGVLALLAYSPLAFAYAILVLRDDLPKWGLGFLVPIAKLLMPFRKLIEVLLFVLAIGVGAYTGFLISAMNAYPMLNTAVLPALFLVSGLSAGAAANAVLALVMFKTDSHDKTLAKMHGLELPVMAIEIMFLFMLFCALYFKGGAAAAALASLTSGVWASVFWIGVVGIGFGVPLLFMLLPAATRHTKGAMIMVACASLTGVLALRHFIVYAGQSYLN
>NC_004347.2|WP_011073771.1|4213046_4213790_+|sulfite-exporter-TauE/SafE-family-protein
MFSLIDPQTLAIASVIVFLGALTQSLIGFGLAVVASPLLYIVDPQLVPAPVIVMGFSIALLTLLRERGHLEFNGLQYALLGRVPGGFIGASLLLFAPQPVLGLAIAAIVTVAVVLSLYKFSLPVNKTTLFGAGVISGIFGNIAAIGGPPMAILLAGKDASQFRAALSAFFIFSSAIALTILGITGLLEIKHFWLSLMLLPSVLLGYLVAGKLVGSVDKHKTKMATLALCAISALVLTVKSVIELLPQ
>NC_004347.2|WP_011073770.1|4212635_4212950_+|met-regulon-transcriptional-regulator-MetJ
MTEWNGEYISPYAEHGKKNEQVKKITVSIPLKVLKVLTDERTRRQVNNLRHATNSELLCEAFLHAYTGQPLPDDADLSKECPDSIPAEAKRLMDEMGIEWEDME
>NC_004347.2|WP_164925915.1|4211250_4212414_-|cystathionine-gamma-synthase
MTERQLATLAVRQGIESDTQYGAVVPPIYLSTNYAFDGHKNPREFDYSRSGNPTRSILGDALAKLEKGATGVVTCTGMAAITLVTTLLGPDDLLVVPHDCYGGSYRLFTNLAKKGQFKLLVVDQTDNQALAQAIAQQPKMVWIETPSNPLLRVVDIEAIAKASHGVGALVVVDNTFLSPILQQPLLLGADIVIHSTTKYINGHSDVVGGAVIAKDPQIGETLHWWSNTLGLTGSAFDSYQTLRGLRTLAVRIREHQRNAQRIVELLSNSPVVSKVYYPGLADHPGHAIAAKQQKGFGAMLSFELKGGEAEVVAFLDALSLFSVAESLGGVESLVAVPATMTHRAMEPQARFEAGIKDTLLRLSVGIEDADDLVADIQAGLAAVAACQ
>NC_004347.2|WP_011073779.1|4224046_4224832_-|class-I-SAM-dependent-methyltransferase
MSSNALYTDLSGYYDLMCSDINYQQQSASIHRLHQFLGNNGKQHLDLACGTGPHVRHFIDLGYQCSGLDINQPMLDMAMRRCPEAQFNLQDMTAFYLEQPVDLITCFLYSIHYSAGIERLKSCIASVHRALNDGGIFCFNSVDKHCIDNRLSIKHFAEFEGYHFAFESGWHYNGQGEKQSLNLSIAKRQQPFTQLTDFEADTSLHQTELWQDQHTMVATSFAELQALLAPYFEVHIFEHDYEKIVPWDLSSGNALFVCVKI
>NC_004347.2|WP_011073780.1|4225096_4225810_-|oxidative-stress-defense-protein
MKHSLLAVLVAGGLFSGAFTATTLAAEVDFPHIETMGVSQIQVEPDMAELNVEVAVTEKDAKAAKDNSDAAVAKFIARLAAAGVSKEHIQSANLNLQPQYIYAQDKAPELTGYIASRQITVTVTELSRLNTIVDSAIEEGMNRVNNIALKSSKEAEYVAKARQEAIVDAKQKAESLAKGFGENLGKIWQIRYYDQRPVQPVMLRMNAKADYAMAAAESYQYGQVTIEDRVEVVYKLK
>NC_004347.2|WP_011073781.1|4226201_4227647_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MTVETFHPKQTTTLETPAKTLEAASADSVNTGNVATGNRIGFVSLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEENGKVIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPEHNPFTSLIPQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEILVVSQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEGLILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKEDRYHRFMEVQAEISAERLARFVGRTMDILIDDVDEEGAIGRSFADAPEIDGMVFINGETELEPGMLVRAVITHSDEHDLWAELVDADAEDEVEA
>NC_004347.2|WP_164925916.1|4228109_4228343_-|ribosome-alternative-rescue-factor-ArfA
MAKVKAEGVLEHENGRGTITDNALKALVTSPLFRMRTEKPKKGKGSYNRKGKAFKMSNREGYQHKGDTPFGFMGMMF
>NC_004347.2|WP_011073783.1|4228631_4229477_+|transporter-substrate-binding-domain-containing-protein
MQFAVIYRPLLSLFCLFVILSPSLAQAFSSSECIITMGYRTSERRPFIEQEPSNQGFYRDIYQAAAEKIGCKLRVVRAPKLRILRDLKLGNVDFYPGLHFSEERAQFAYFIPNGLSERYIGISRAGAASINSLAQLSQTGMTLLIAPGSYDFNGISKTMSVRKPPELDVPKALDYLLASQGDFFIYDLATLNYYLKNRDISQFQLHPDCCQQPQAMYLGFSKKSRHFRALQNPYYRANLPLSPDNIPSVLAEDSKAYEFARALAIMDAEGETQRIYFNHFG
>NC_004347.2|WP_164925780.1|4229642_4231784_+|TonB-dependent-receptor
MEDNKMAATALNIPHGFKCSEISTALTLALGLSFAPLAMANDNEQTQIERILVHGEQSICRNALGSADALLKDQGVDFSEAGGVSALPVLNGMMGDRIKVLVDGADITASCANQMNPPLSYVSANQINSVEVVAGVSPVSAGGDNIAGVIKVNSLNPKFTDSENLSFESGEISSGYRSTSDSLLLGAKAGIASKNVSLSYQGAYEDANSYHDGNGDKVLDTLYRAQNHALTAAWRDEKQQLAVKLTHQAIPFQGFPNQYMDMTDNKSYGALVRYLRDLENDGEFSAQLNWHSVKHEMGFFTPEKTGKMPMNTEGSDYSYQLHWRLTMGDDSTLLLGQEYYSYQLDDIWPAVPGTMMAPNDYININDGERRRAAVYGEWQQNLNPLWWLSAGVRYEYVTTDTGEVQAYSNMPMMGMPNVDAEAAKAFNAMDRSRDDNLIDATLLARYQLSAKQQLEFGLARKNRAPNLYERYSWGRGVMATTMIGWYGDGNGYVGNPDLKPETAHTLSAAYKFNGDAWQFSTTAWYSAVTDYIDAEVIGSFNRTSTPAGKRNILKFTNEDANLYGAKFSALYLLADTDSGKWQMLGKLNITRGERDEGNEPLYQIKPLQTELALSHQLGDWENRLAWQWVATKDRVDDRRLENETSSYSLLNLSSSIKWQELSLTFAINNLFDTYYELPLGGVSIAEFKADSSNGFSQVAGSGRSFELGASYRF
>NC_004347.2|WP_011073785.1|4231901_4233245_-|metalloprotease-PmbA
MSLNRIDSELTALKDAVAVALEYANKLGTNAAEVAISKQQGLSVSTRLKEVETVEFNKDGALGITVYRDGCKGSSSTSDLSPEAIALAVKAADDIARYTSADPFSGLADKALMATEIRDLKLYYPQEISADELAQLAIRAETAALDADPRINNSDGASANAHTSVKVYGNSHGFLNGYCSSRYSLSCSVIGEDRNGNMQRDYDYTIARKFNEMLSPESVGLKTAEKTVSRLGARKIATTRLPILLAPEIATGLIGHLIGAISGGSLYRKSSFLLDAIHTQIFPDWFSIEEQPHLLGALASANYDSEGVATQDRRIIDRGMLETYLLTSYSARKLSLPNTGHAGGIYNWTLAHTGQGFDELVKGMGTGLIVTEVMGQGVNMVTGDYSRGAAGFYVENGEVQFPVEEITIAGNLKDMFRGIQAVSKDFDLRSSIRTGGILLSEMKVAGN
>NC_004347.2|WP_011073786.1|4233406_4233940_+|ribosome-associated-protein
MKIVGDSEHFKQPYDSNDEYVSKTEDKRDCEAAQKVGMELVSLSKTQLDKIELDEHLYDSIQQAHKIKPKTEAYRRHMQYIGKLMRNVDIEPIKASLAVVLNKNSNETAKLQMFEKMRERLLTQGDGEIQTVVEHYPQLDRQKLRTLVRQATKELAKGPESKSSKELFKYLRSEIQD
>NC_004347.2|WP_011073787.1|4233968_4236449_+|Ig-like-domain-containing-protein
MRFSKTLSVFSWALLGATALSGCNGAADGTDADGSTDSYSLSLSYKTLVNGQCADSTSSLSFPTDASFCALATLKQGSANVSGQLINFSATLGTVSPATKLTNANGVAEVIIANASLTEGAGTVSATYTPTGAAALTATRNYEFIGKGGSGTVTPPKLSASIVNGANLVTRFKVDEAVQLQAILLDTESKGIADAKVTFSAGTATLNPASALTNSQGLAQVTYTPSATELGANTLTVTVDYQGQSLQSSSLYEVLSKDAINETGTLKLGSFNGTSFTEGKLGSTLTPQTDGSYKISAGGSFGVTASLVLEASDGTITRVQTPSSMSFSSDCTASNNATLDTPVTTLSGNASSTFQDTSCSGNSERNDQIIATTVVGNQTLTANFPFTLQRQTLASLSFESATPSQIRIKGAGGTGSSESSLVSFKVTSANGQPAAQQKVSFSLDTVVGGLSFANGSASAESLTNSQGIASVRVLSGTVPTPVRVVATAVDADTKEVITSQSEQLTVNTGLPQQLGFSLSTTIVNPEAGDHDGETATITARLSDSFGNPAPDDTTINFTTEGGQIAPSCQTKNGACSVTWTSSDYRPQDHRISILAYALGHETFFDTNGNNQFDSADGGAIAKACLFNGVATNCSGNGMDVETFHSKGFSDLPTAFRDDNENFSFDSGERYFDNLARDTYPAADGKFNGPQCLGSLCGTGQANKTYVRKGLVMSMSGSQAYISVMQDGVRLASVNDIKPVAAGAQSKFVVFVHDSAKQILPAKTSIELCVDCNGAPEITEVPNTLSAKDGLGTPLSFSAFAGNNVSIIATTPKGIKTTNLGFTVPTL
>NC_004347.2|WP_011073788.1|4236503_4237835_-|APC-family-permease
MSQQKPGLKQSLNLWQVVVMGLAYLTPMAVFDTFGIVSEITSGHVATSYLLALAGILFTAFSYGHLVRKYPYAGSAYTYAQKNFSPNVGFMVGWSSLLDYMFMPMINMLLAKIYLTAMFPNVEPWIFIFGLVTVMTVLNLRGIDLVANFNGVIVFAQIAIILVFIGLMAHSLSLGEGEGVIASVRPFYSEQVTLAPLFTGATILCFSFLGFDGLSSLSEETKDAKRVIPRAILLTALIGGVIFVSVSYFLQLYFPDISRFEQLDAVLPEIALYVGGNLFQSIVLVATTIAVLASGMAAHAGVARILYVMGRDNMLPNKGFGYVHPKWRTPAFNVVLVGLLALSAVSFDLEMALALVNFGALVAFTFVNLSVIVQFYIKEKRNQSLKEHLQYFVLPLCGAATIGVLWINLEPQSLELGLIWGAVGMLYLALRSLRLRKAVELQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_004347_4	4.1\|1951328\|53\|NC_004347\|CRISPRCasFinder	1951328-1951380	53	NC_004347.2	1950617-1950669	1	0.981

1. spacer 4.1|1951328|53|NC_004347|CRISPRCasFinder matches to position: 1950617-1950669, mismatch: 1, identity: 0.981

ttttttgtttaccgaatttgaacccgggttcctcattctaagcgcagctcctc	CRISPR spacer
ttttttgtttacagaatttgaacccgggttcctcattctaagcgcagctcctc	Protospacer
************ ****************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125324 : 190100

Staphylococcus_phage(20.0%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011070523.1\|125324_126302_+\|transposase	transposase	NA	NA	NA	NA
WP_011070524.1\|126480_127458_+\|transposase	transposase	NA	NA	NA	NA
WP_011070525.1\|128106_128979_+	hypothetical protein	NA	NA	NA	NA
WP_011070526.1\|129239_129632_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_011070527.1\|129649_130228_-	hypothetical protein	NA	NA	NA	NA
WP_011070528.1\|130436_131705_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_011070529.1\|131701_132325_-	LysE family translocator	NA	NA	NA	NA
WP_011070530.1\|132351_132912_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011070531.1\|133039_133489_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_011070532.1\|133510_134311_-	NRDE family protein	NA	NA	NA	NA
WP_011070533.1\|134373_136014_-	metal transporter	NA	NA	NA	NA
WP_011070534.1\|136309_136903_+	YhgN family NAAT transporter	NA	NA	NA	NA
WP_011070535.1\|137206_140014_+	immune inhibitor A	NA	NA	NA	NA
WP_011070536.1\|140070_140640_-	chorismate lyase	NA	NA	NA	NA
WP_011070537.1\|140741_141152_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_011070538.1\|141211_142309_+	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_011070539.1\|142351_142642_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_011070540.1\|142668_143331_-	Bax inhibitor-1 family protein	NA	NA	NA	NA
WP_011070541.1\|143380_144142_-	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SIK8	Klosneuvirus	5.2e-15	31.6
WP_011070542.1\|144153_145407_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_011070543.1\|145711_146248_+	non-heme ferritin	NA	NA	NA	NA
WP_011070544.1\|146605_149839_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.5e-23	38.9
WP_011070545.1\|150202_150856_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.6e-41	43.2
WP_011070546.1\|151518_153654_+	oligopeptidase B	F2Y2Z7	Organic_Lake_phycodnavirus	6.7e-36	25.7
WP_011070547.1\|153664_154045_+	GIY-YIG nuclease family protein	A0A0C5AS36	Spodoptera_frugiperda_granulovirus	1.6e-09	46.8
WP_011070548.1\|154155_155370_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_011070549.1\|155714_156200_+	hypothetical protein	NA	NA	NA	NA
WP_164925586.1\|156319_157000_+	hypothetical protein	NA	NA	NA	NA
WP_011070551.1\|157059_157206_+	hypothetical protein	NA	NA	NA	NA
WP_011070552.1\|158399_159176_-	hypothetical protein	NA	NA	NA	NA
WP_011070553.1\|159447_160215_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011070554.1\|160240_162232_-	peptidase M14	NA	NA	NA	NA
WP_011070555.1\|162365_163490_-	FUSC family protein	NA	NA	NA	NA
WP_011070556.1\|164021_165260_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_011070557.1\|165736_166093_+	hypothetical protein	NA	NA	NA	NA
WP_011070558.1\|166257_167817_-	AbgT family transporter	NA	NA	NA	NA
WP_011070559.1\|168070_169612_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	6.8e-139	50.1
WP_011070560.1\|169813_170674_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_011070561.1\|170699_171098_-	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_011070562.1\|171349_172276_+	type II secretion system protein GspC	NA	NA	NA	NA
WP_011070563.1\|172300_174415_+	type II secretion system secretin GspD	O80264	Vibrio_phage	3.4e-32	30.3
WP_011070564.1\|174411_175977_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_011070565.1\|175980_177204_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_011070566.1\|177278_177713_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_011070567.1\|177714_178287_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_011070568.1\|178273_178642_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_011070569.1\|178622_179390_+	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_011070570.1\|179386_180385_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_011070571.1\|180433_181621_+	type II secretion system protein GspL	NA	NA	NA	NA
WP_011070572.1\|181622_182099_+	type II secretion system protein M	NA	NA	NA	NA
WP_011070573.1\|182113_182875_+	type II secretion system protein N	NA	NA	NA	NA
WP_011070574.1\|182934_183597_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_164925807.1\|183727_184327_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	NA	NA	NA
WP_011070576.1\|184304_186314_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_011070577.1\|186313_187441_+	sulfotransferase family protein	NA	NA	NA	NA
WP_011070578.1\|187552_187840_+	hypothetical protein	NA	NA	NA	NA
WP_011070579.1\|187836_188319_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011070580.1\|188404_188956_+\|tail	phage tail protein	A0A221J6G5	Arthrobacter_phage	1.6e-13	32.4
WP_011070581.1\|188995_189526_+\|tail	phage tail protein	NA	NA	NA	NA
WP_011070582.1\|189554_190100_+\|tail	phage tail protein	A0A0U4JYA4	Arthrobacter_phage	1.6e-13	32.0

DBSCAN-SWA_2

364484 : 403300

uncultured_Caudovirales_phage(21.43%)

transposase,integrase

attL 401980:402001|attR 406810:406831

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011070721.1\|364484_365687_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	6.6e-81	75.1
WP_164925809.1\|365724_367647_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	9.3e-154	44.3
WP_011070722.1\|367846_368230_-	RidA family protein	NA	NA	NA	NA
WP_011070723.1\|368254_370360_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	6.0e-13	35.8
WP_007651394.1\|370403_370682_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_011070724.1\|370740_371364_-	guanylate kinase	K4JYM5	Abalone_herpesvirus	4.7e-22	35.4
WP_011070725.1\|372002_373493_+	hypothetical protein	NA	NA	NA	NA
WP_011070726.1\|373651_374533_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_164925592.1\|374516_375581_+	phosphotransferase	NA	NA	NA	NA
WP_011070728.1\|375686_377111_+	MFS transporter	NA	NA	NA	NA
WP_011070729.1\|377126_377945_-	sulfotransferase family protein	NA	NA	NA	NA
WP_011070730.1\|378249_379365_+	Fic family protein	D7RWK9	Brochothrix_phage	4.2e-05	24.9
WP_011070731.1\|379585_382753_+	DUF3427 domain-containing protein	Q9T1H9	Lactobacillus_phage	7.6e-28	27.9
WP_011070732.1\|382764_383652_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011070733.1\|383886_384378_+	DMT family transporter	NA	NA	NA	NA
WP_011070734.1\|384400_384862_+	DMT family transporter	NA	NA	NA	NA
WP_164925810.1\|385038_385746_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_164925593.1\|386155_387124_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	6.5e-55	50.0
WP_141135407.1\|387096_388256_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925811.1\|388341_388770_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.4e-39	52.5
WP_011070738.1\|389168_389462_+	glutamine amidotransferase	NA	NA	NA	NA
WP_005054087.1\|389567_390770_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011070739.1\|390809_391523_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_011070740.1\|391525_394627_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.2e-79	27.0
WP_011070741.1\|394896_395895_-	virulence protein RhuM/Fic/DOC family protein	Q9JMN3	Wolbachia_phage	1.0e-23	34.8
WP_011070742.1\|395982_397302_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011070743.1\|397291_399121_-	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	1.9e-100	43.5
WP_164925594.1\|399549_400200_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_011070745.1\|400328_400553_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011070746.1\|400539_400788_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_164925595.1\|400895_401582_-	hypothetical protein	NA	NA	NA	NA
401980:402001	attL	NA	NA	NA	NA
WP_011070748.1\|402010_403300_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.4e-91	42.3
WP_011070748.1\|402010_403300_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.4e-91	42.3
406810:406831	attR	NA	NA	NA	NA

DBSCAN-SWA_3

675978 : 726876

Vibrio_phage(26.09%)

capsid,head,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011070976.1\|675978_676584_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	5.4e-15	37.8
WP_011070977.1\|676576_677032_+	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	5.3e-15	40.0
WP_164925819.1\|677238_677898_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_011070979.1\|677933_678491_+	hypothetical protein	NA	NA	NA	NA
WP_011070980.1\|678529_678958_+	Mu phage protein	NA	NA	NA	NA
WP_141135407.1\|679106_680265_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011070981.1\|680316_680646_+	phage protein	NA	NA	NA	NA
WP_011070982.1\|680635_681193_+	lysozyme	A0A0A1I5L5	Burkholderia_phage	3.4e-24	46.3
WP_011070983.1\|681189_681759_+	Mu phage conserved phage protein	NA	NA	NA	NA
WP_011070984.1\|681855_682068_+	hypothetical protein	NA	NA	NA	NA
WP_011070985.1\|682064_682412_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_011070986.1\|682411_682708_+	phage protein	A0A2I7S9D8	Vibrio_phage	6.9e-16	44.8
WP_011070987.1\|682710_682983_+	phage protein	NA	NA	NA	NA
WP_011070988.1\|682972_683539_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.1e-46	57.6
WP_011070989.1\|683538_685179_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.5e-160	58.8
WP_011070990.1\|685178_686780_+	DUF935 domain-containing protein	H1ZZE2	Pseudomonas_virus	2.5e-120	46.2
WP_011070991.1\|686772_688110_+\|capsid	minor capsid protein	A0A0C4UQY9	Shigella_phage	1.3e-98	42.9
WP_011070993.1\|688257_688710_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	6.0e-19	46.2
WP_011070994.1\|688754_689648_-	hypothetical protein	NA	NA	NA	NA
WP_011070995.1\|689863_690100_+	phage protein	NA	NA	NA	NA
WP_011070996.1\|690145_690760_+	hypothetical protein	NA	NA	NA	NA
WP_164925612.1\|690867_692157_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_011070998.1\|692233_693403_+\|protease	phage protease	C9DGP0	Escherichia_phage	9.6e-61	41.1
WP_011070999.1\|693402_694323_+\|head	Mu-like prophage major head subunit gpT family protein	C9DGP2	Escherichia_phage	1.3e-81	49.8
WP_011071000.1\|694393_694840_+	phage protein	A0A0C4UQZ0	Shigella_phage	1.7e-10	39.3
WP_165443317.1\|694854_695283_+	DUF1320 family protein	A0A0M3LP98	Mannheimia_phage	1.5e-19	42.9
WP_011071002.1\|695282_695726_+	hypothetical protein	NA	NA	NA	NA
WP_011071003.1\|695754_696501_+	hypothetical protein	NA	NA	NA	NA
WP_011071004.1\|696620_700547_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	2.6e-49	40.6
WP_011071005.1\|700543_700909_+	hypothetical protein	NA	NA	NA	NA
WP_011071006.1\|700921_703417_+	hypothetical protein	A0A2I7QXQ4	Vibrio_phage	2.8e-219	49.8
WP_164925613.1\|703428_703908_+	hypothetical protein	A0A2I7QXS4	Vibrio_phage	1.9e-23	44.2
WP_141135407.1\|703880_705040_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925614.1\|705158_705623_+	hypothetical protein	NA	NA	NA	NA
WP_011071007.1\|705615_705918_+	phage protein	NA	NA	NA	NA
WP_011071008.1\|705914_707714_+	hypothetical protein	A0A088C4B7	Shewanella_sp._phage	3.7e-104	46.9
WP_011071009.1\|707710_707932_+	hypothetical protein	NA	NA	NA	NA
WP_011071010.1\|708074_708836_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	1.1e-94	62.7
WP_011071011.1\|709236_709641_+	hypothetical protein	NA	NA	NA	NA
WP_011071012.1\|709745_710777_-	galactose mutarotase	NA	NA	NA	NA
WP_011071013.1\|710917_712063_-	galactokinase	NA	NA	NA	NA
WP_011071014.1\|712377_714021_-	cation:proton antiporter	NA	NA	NA	NA
WP_011071015.1\|714173_716006_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_011071016.1\|716002_716326_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_011071017.1\|716548_717112_+	FxsA family protein	NA	NA	NA	NA
WP_011071018.1\|717278_717647_+	hypothetical protein	NA	NA	NA	NA
WP_011071019.1\|718090_719080_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011071020.1\|719083_720442_-	MATE family efflux transporter	NA	NA	NA	NA
WP_011071021.1\|720669_720960_+	co-chaperone GroES	A0A221S331	uncultured_virus	1.6e-12	41.5
WP_011071022.1\|721018_722656_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.2e-178	66.3
WP_011071023.1\|723067_723304_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011071024.1\|723307_724609_+	HipA domain-containing protein	NA	NA	NA	NA
WP_164925615.1\|725101_725668_-	hypothetical protein	NA	NA	NA	NA
WP_011071025.1\|725664_726876_-\|transposase	IS256-like element ISSod18 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	48.1

DBSCAN-SWA_4

998572 : 1065014

Acinetobacter_phage(18.18%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164925630.1\|998572_999648_-\|transposase	IS3-like element ISSod2 family transposase	S5WIU1	Leptospira_phage	2.2e-43	39.4
WP_011071244.1\|1000300_1001290_-	2-hydroxyacid dehydrogenase	M1HHP3	Acanthocystis_turfacea_Chlorella_virus	1.5e-62	44.6
WP_011071245.1\|1001533_1003324_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	7.8e-62	35.3
WP_011071246.1\|1003824_1004235_+	hypothetical protein	NA	NA	NA	NA
WP_011071247.1\|1004231_1004765_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011071248.1\|1004820_1005111_+	hypothetical protein	NA	NA	NA	NA
WP_011071249.1\|1005207_1005393_-	hypothetical protein	NA	NA	NA	NA
WP_011071250.1\|1005491_1006916_-	cytochrome c biosynthesis protein	NA	NA	NA	NA
WP_011071251.1\|1007130_1007556_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_011071252.1\|1007684_1008182_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011071253.1\|1008246_1009422_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011071254.1\|1009601_1010762_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	8.7e-22	28.5
WP_141135407.1\|1011483_1012642_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_172966545.1\|1012682_1013642_+	hypothetical protein	NA	NA	NA	NA
WP_011071255.1\|1013819_1014971_+	chromate efflux transporter	NA	NA	NA	NA
WP_011071256.1\|1015100_1016765_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.2e-21	31.2
WP_011071257.1\|1016860_1021147_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_164925829.1\|1021394_1022282_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011071259.1\|1022286_1023978_-	amidohydrolase	NA	NA	NA	NA
WP_164925631.1\|1024448_1025546_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	9.1e-05	39.0
WP_011071261.1\|1025576_1027079_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.8e-88	38.9
WP_011071262.1\|1027190_1027631_-	DUF2846 domain-containing protein	NA	NA	NA	NA
WP_011071263.1\|1028081_1028582_-	lactoylglutathione lyase family protein	NA	NA	NA	NA
WP_011071264.1\|1028751_1029684_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	5.7e-08	39.1
WP_011071265.1\|1029977_1030943_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_164925830.1\|1031132_1032710_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011071267.1\|1032740_1033838_-	calcium:proton antiporter	NA	NA	NA	NA
WP_011071268.1\|1034033_1036346_-	hypothetical protein	NA	NA	NA	NA
WP_011071269.1\|1036509_1038243_-	hypothetical protein	NA	NA	NA	NA
WP_011071270.1\|1038252_1040523_-	hypothetical protein	NA	NA	NA	NA
WP_011071271.1\|1040788_1041751_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_011071272.1\|1042149_1043730_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_011071273.1\|1043986_1044865_+\|transposase	IS982-like element ISSod20 family transposase	NA	NA	NA	NA
WP_011071274.1\|1045280_1046744_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_011071275.1\|1046740_1048285_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_011071276.1\|1048383_1050231_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_011071277.1\|1050227_1050536_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_011071278.1\|1050532_1051084_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_011071279.1\|1051094_1051637_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_011071280.1\|1051645_1052614_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_011071281.1\|1052610_1055340_-	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA
WP_011071282.1\|1055381_1056767_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_011071283.1\|1056763_1057306_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_011071284.1\|1057387_1059193_-	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA
WP_011071285.1\|1059196_1059871_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_011071286.1\|1059900_1060305_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_141135407.1\|1062063_1063223_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011070721.1\|1063811_1065014_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	6.6e-81	75.1

DBSCAN-SWA_5

1451112 : 1590130

106

Vibrio_phage(19.05%)

transposase,integrase

attL 1451071:1451130|attR 1588903:1590139

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1451071:1451130	attL	NA	NA	NA	NA
WP_011071113.1\|1451112_1452069_-\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
1451071:1451130	attL	NA	NA	NA	NA
WP_164925842.1\|1452110_1452461_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_164925649.1\|1452652_1453852_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_011071603.1\|1453832_1454270_-	nucleoside deaminase	NA	NA	NA	NA
WP_011071604.1\|1455130_1456045_+	DUF368 domain-containing protein	NA	NA	NA	NA
WP_011071605.1\|1456245_1457820_+	hypothetical protein	NA	NA	NA	NA
WP_011071606.1\|1457878_1458559_-	PAS domain-containing protein	NA	NA	NA	NA
WP_011071607.1\|1458601_1459876_-	serine dehydratase subunit alpha family protein	NA	NA	NA	NA
WP_011071608.1\|1459898_1460282_-	RidA family protein	NA	NA	NA	NA
WP_011071609.1\|1460997_1462137_+	transglutaminase family protein	NA	NA	NA	NA
WP_011071610.1\|1462153_1462471_+	Hg(II) uptake system permease component MerT family	NA	NA	NA	NA
WP_011071611.1\|1462467_1462776_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011071612.1\|1462813_1465777_-	DEAD/DEAH box helicase family protein	Q5YA94	Bacillus_phage	2.5e-28	29.1
WP_011071613.1\|1465780_1466359_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011071614.1\|1466545_1467289_-	periplasmic RmlC-type Cupin domain family protein	NA	NA	NA	NA
WP_011071615.1\|1467458_1468541_-	hypothetical protein	NA	NA	NA	NA
WP_011071616.1\|1468649_1469783_-	outer membrane beta barrel protein	NA	NA	NA	NA
WP_011071617.1\|1469822_1470194_-	cytochrome c3 family protein	NA	NA	NA	NA
WP_011071618.1\|1470197_1471718_-	flavocytochrome c	NA	NA	NA	NA
WP_011071619.1\|1472051_1472834_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011071620.1\|1473205_1473805_-	response regulator	NA	NA	NA	NA
WP_164925843.1\|1473779_1475489_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_011071622.1\|1475757_1476885_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_011071623.1\|1477071_1478424_+	FMN-binding protein	NA	NA	NA	NA
WP_011071624.1\|1478441_1479479_+	porin	NA	NA	NA	NA
WP_164925650.1\|1479604_1481371_-	flavocytochrome c	M1HTN0	Paramecium_bursaria_Chlorella_virus	8.5e-45	31.0
WP_011071626.1\|1481491_1482445_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011071627.1\|1482707_1484945_+	hypothetical protein	NA	NA	NA	NA
WP_011071628.1\|1484955_1486698_+	hypothetical protein	NA	NA	NA	NA
WP_164925651.1\|1487349_1487682_+	hypothetical protein	NA	NA	NA	NA
WP_011071629.1\|1488211_1489168_+	DmsE family decaheme c-type cytochrome	NA	NA	NA	NA
WP_011071630.1\|1489182_1491171_+	MtrB/PioB family decaheme-associated outer membrane protein	NA	NA	NA	NA
WP_011071631.1\|1491190_1493701_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	3.0e-176	42.1
WP_011071632.1\|1493714_1494389_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.5e-63	54.8
WP_011071633.1\|1494446_1495112_+	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_011071634.1\|1495122_1495590_+	hypothetical protein	NA	NA	NA	NA
WP_011071635.1\|1495731_1497363_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-17	30.9
WP_164925845.1\|1497977_1498766_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	7.6e-78	53.6
WP_011071113.1\|1498832_1499789_+\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_005054087.1\|1499996_1501199_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_164925652.1\|1501305_1501749_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1V0E8G8	Vibrio_phage	9.0e-20	37.1
WP_164925653.1\|1502401_1503232_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_011071637.1\|1503493_1504570_+	hypothetical protein	NA	NA	NA	NA
WP_011071638.1\|1504688_1504901_+	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	9.3e-07	46.6
WP_011071639.1\|1504939_1506409_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_011071640.1\|1506724_1507402_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_011071641.1\|1507548_1507842_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011071643.1\|1508399_1509122_-	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_011071644.1\|1509201_1509768_-\|integrase	site-specific integrase	W8CYP1	Bacillus_phage	6.1e-21	33.7
WP_011071645.1\|1509876_1510284_-	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_011071646.1\|1510470_1510884_-	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_164925654.1\|1510882_1511080_+	hypothetical protein	NA	NA	NA	NA
WP_011071647.1\|1511069_1511444_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_011071648.1\|1511586_1511949_-	hypothetical protein	NA	NA	NA	NA
WP_011071649.1\|1511989_1512463_-	DNA repair protein RadC	NA	NA	NA	NA
WP_011071113.1\|1512538_1513495_-\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_011071650.1\|1514244_1516299_+	N-6 DNA methylase	B3GAM1	uncultured_virus	2.9e-20	32.3
1512497:1513536	attR	NA	NA	NA	NA
WP_011071651.1\|1516295_1517591_+	AAA family ATPase	NA	NA	NA	NA
1512497:1513536	attR	NA	NA	NA	NA
WP_011071652.1\|1517593_1518256_+	hypothetical protein	NA	NA	NA	NA
WP_011071653.1\|1518252_1519662_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011071654.1\|1519671_1523802_+	protein kinase	A0A2R8FG14	Cedratvirus	6.9e-13	25.7
WP_011071655.1\|1523798_1525445_+	hypothetical protein	NA	NA	NA	NA
WP_141135407.1\|1530016_1531175_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925655.1\|1531266_1532103_+	ATP-binding protein	NA	NA	NA	NA
WP_011071656.1\|1533025_1534087_+	macro domain-containing protein	A0A0B4N0V6	Escherichia_phage	1.0e-13	37.5
WP_011071657.1\|1534141_1534396_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011071658.1\|1534618_1534951_+	membrane protein	NA	NA	NA	NA
WP_164925656.1\|1535389_1535554_+	hypothetical protein	NA	NA	NA	NA
WP_011071660.1\|1536628_1537876_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.0e-116	50.1
WP_011071661.1\|1538571_1539063_-	SsrA-binding protein SmpB	NA	NA	NA	NA
WP_011071662.1\|1539327_1539765_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_011071663.1\|1539754_1540090_+	RnfH family protein	NA	NA	NA	NA
WP_164925846.1\|1540181_1540706_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_011071665.1\|1541110_1541902_+	hypothetical protein	NA	NA	NA	NA
WP_011071666.1\|1541946_1542162_+	hypothetical protein	NA	NA	NA	NA
WP_164925657.1\|1542210_1543953_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-15	34.4
WP_011071668.1\|1544162_1545932_+	cation:proton antiporter	NA	NA	NA	NA
WP_011071669.1\|1545996_1548444_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011071670.1\|1549278_1550928_+	malate synthase A	NA	NA	NA	NA
WP_011071671.1\|1551062_1552385_+	isocitrate lyase	NA	NA	NA	NA
WP_011071672.1\|1553034_1553403_+	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	1.9e-31	53.8
WP_011071673.1\|1553457_1553670_-	hypothetical protein	NA	NA	NA	NA
WP_011071674.1\|1554159_1554531_-	hypothetical protein	NA	NA	NA	NA
WP_011071675.1\|1555249_1556398_-	L-threonine dehydrogenase	NA	NA	NA	NA
WP_011071676.1\|1556810_1557443_-	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	3.8e-11	31.8
WP_011071677.1\|1557950_1560260_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_164925658.1\|1560273_1562514_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_011071679.1\|1562510_1564763_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_011071680.1\|1564765_1567279_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	2.4e-16	42.5
WP_011071681.1\|1567398_1568661_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_164925847.1\|1568728_1570318_+	glycogen/starch synthase	NA	NA	NA	NA
WP_011071683.1\|1570427_1573451_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.6e-22	36.8
WP_011071685.1\|1575195_1576293_+	GTP-binding protein	NA	NA	NA	NA
WP_011071686.1\|1576306_1577083_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011071687.1\|1577427_1577949_+	DUF3087 domain-containing protein	NA	NA	NA	NA
WP_011071688.1\|1578181_1579726_-	peptide MFS transporter	NA	NA	NA	NA
WP_011071689.1\|1580145_1581492_+	MATE family efflux transporter	NA	NA	NA	NA
WP_011071690.1\|1581711_1583223_+	hypothetical protein	NA	NA	NA	NA
WP_011071691.1\|1583431_1583797_+	VOC family protein	NA	NA	NA	NA
WP_011071692.1\|1583884_1584394_+	hypothetical protein	NA	NA	NA	NA
WP_011071693.1\|1584692_1585670_+\|transposase	transposase	NA	NA	NA	NA
WP_011071694.1\|1585956_1587075_+\|transposase	IS91-like element ISSod25 family transposase	NA	NA	NA	NA
WP_011071695.1\|1587417_1588065_+	hypothetical protein	NA	NA	NA	NA
WP_011071696.1\|1588142_1588607_+	DUF2846 domain-containing protein	NA	NA	NA	NA
WP_164925659.1\|1588587_1588917_+	hypothetical protein	NA	NA	NA	NA
WP_141135407.1\|1588971_1590130_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
1588903:1590139	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2078481 : 2133729

Klosneuvirus(16.67%)

tRNA,transposase,integrase

attL 2081727:2081741|attR 2135937:2135951

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011070548.1\|2078481_2079696_+\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_011072067.1\|2079921_2080950_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_011072068.1\|2080946_2081825_+	alpha/beta hydrolase	NA	NA	NA	NA
2081727:2081741	attL	NA	NA	NA	NA
WP_011072069.1\|2081841_2082249_-	YccF domain-containing protein	NA	NA	NA	NA
WP_011072070.1\|2082503_2083496_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA
WP_011072071.1\|2083548_2084262_+	NUDIX hydrolase	A0A1V0SIB1	Klosneuvirus	6.8e-09	32.0
WP_164925858.1\|2084636_2085524_+	ribose-phosphate diphosphokinase	A0A2H4YGS6	Raoultella_phage	1.1e-37	39.9
WP_011072073.1\|2085534_2087007_+	nicotinate phosphoribosyltransferase	A0A218KC49	Bacillus_phage	2.6e-148	54.5
WP_011072074.1\|2087731_2087905_-	hypothetical protein	NA	NA	NA	NA
WP_011072075.1\|2088416_2089109_-	cupin domain-containing protein	NA	NA	NA	NA
WP_164925679.1\|2089101_2089770_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011072077.1\|2089892_2090444_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011072078.1\|2090540_2091155_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011072079.1\|2091377_2092322_+	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.8e-33	30.3
WP_011072080.1\|2092512_2093154_-	hypothetical protein	NA	NA	NA	NA
WP_011072081.1\|2093205_2093565_-	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_164925859.1\|2093989_2095276_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_011072083.1\|2095498_2095987_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011072084.1\|2096497_2098426_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_011072085.1\|2098654_2098882_+	DUF3389 domain-containing protein	NA	NA	NA	NA
WP_164925860.1\|2098956_2099628_+	carboxylesterase	NA	NA	NA	NA
WP_011072087.1\|2099991_2101701_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_011072088.1\|2102084_2102987_+	hypothetical protein	NA	NA	NA	NA
WP_011072089.1\|2104259_2104619_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_011072090.1\|2104760_2105708_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_011072091.1\|2105976_2106408_+	hypothetical protein	NA	NA	NA	NA
WP_011072092.1\|2106499_2107339_+	DUF692 domain-containing protein	NA	NA	NA	NA
WP_011072093.1\|2107338_2108079_+	DUF2063 domain-containing protein	NA	NA	NA	NA
WP_011072095.1\|2108462_2108831_+	YbaN family protein	NA	NA	NA	NA
WP_011072096.1\|2109290_2109842_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-28	43.8
WP_011072097.1\|2109973_2112982_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	9.4e-44	38.2
WP_011072098.1\|2113211_2113541_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_011072099.1\|2113553_2114153_+	recombination protein RecR	NA	NA	NA	NA
WP_011072100.1\|2114426_2116340_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	7.9e-113	35.9
WP_011072101.1\|2116459_2117323_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011072102.1\|2117463_2118108_+	adenylate kinase	NA	NA	NA	NA
WP_164925680.1\|2118187_2119234_+	ferrochelatase	NA	NA	NA	NA
WP_011072104.1\|2119426_2120731_+	inosine/guanosine kinase	NA	NA	NA	NA
WP_011072105.1\|2120955_2121786_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.7e-59	47.1
WP_011072106.1\|2121846_2122371_-	hypothetical protein	NA	NA	NA	NA
WP_011072107.1\|2122532_2124008_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_141135407.1\|2124413_2125572_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925861.1\|2125973_2126558_-	hypothetical protein	NA	NA	NA	NA
WP_164925630.1\|2127293_2128369_-\|transposase	IS3-like element ISSod2 family transposase	S5WIU1	Leptospira_phage	2.2e-43	39.4
WP_141135407.1\|2128885_2130045_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925681.1\|2130082_2130751_-	AAA family ATPase	NA	NA	NA	NA
WP_011072109.1\|2130847_2131402_-	hypothetical protein	NA	NA	NA	NA
WP_011071694.1\|2131768_2132887_-\|transposase	IS91-like element ISSod25 family transposase	NA	NA	NA	NA
WP_011072110.1\|2132865_2133729_-\|integrase	site-specific integrase	NA	NA	NA	NA
2135937:2135951	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2235734 : 2344162

Acinetobacter_phage(23.53%)

tRNA,transposase,integrase

attL 2278543:2278602|attR 2323325:2324754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011072192.1\|2235734_2236856_-\|transposase	ISAs1-like element ISSod22 family transposase	NA	NA	NA	NA
WP_141135407.1\|2237096_2238256_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925687.1\|2238304_2239141_+	hypothetical protein	NA	NA	NA	NA
WP_164925688.1\|2239167_2240802_+	hypothetical protein	NA	NA	NA	NA
WP_141135407.1\|2240856_2242015_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011072193.1\|2242230_2244831_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_011072194.1\|2245146_2245779_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_164925689.1\|2246849_2247011_+	hypothetical protein	NA	NA	NA	NA
WP_011072195.1\|2247106_2248138_+\|transposase	IS630-like element ISSod16 family transposase	NA	NA	NA	NA
WP_164925690.1\|2248162_2249395_+	glutamate decarboxylase	NA	NA	NA	NA
WP_011072196.1\|2249446_2251135_+	aspartate-alanine antiporter	NA	NA	NA	NA
WP_011072197.1\|2251602_2252148_+	heme NO-binding domain-containing protein	NA	NA	NA	NA
WP_011072198.1\|2252140_2253076_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_164925865.1\|2253072_2253453_-	hypothetical protein	NA	NA	NA	NA
WP_164925866.1\|2253514_2255653_-	exodeoxyribonuclease V subunit alpha	A0A1P8DII4	Virus_Rctr197k	9.4e-22	24.8
WP_011072201.1\|2255682_2259483_-	exodeoxyribonuclease V subunit beta	NA	NA	NA	NA
WP_011072202.1\|2259479_2263292_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_164925867.1\|2263401_2265573_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_164925868.1\|2265596_2266637_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_011072205.1\|2266735_2267647_-	AAA family ATPase	NA	NA	NA	NA
WP_011072206.1\|2269284_2269668_-	VOC family protein	NA	NA	NA	NA
WP_011072207.1\|2269785_2271906_-	alpha-amylase family protein	NA	NA	NA	NA
WP_164925691.1\|2271938_2272181_-	cyclomaltodextrinase C-terminal domain-containing protein	NA	NA	NA	NA
WP_164925692.1\|2272755_2272884_-	hypothetical protein	NA	NA	NA	NA
WP_164925630.1\|2273493_2274569_-\|transposase	IS3-like element ISSod2 family transposase	S5WIU1	Leptospira_phage	2.2e-43	39.4
WP_011072208.1\|2277678_2278542_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011071694.1\|2278520_2279639_+\|transposase	IS91-like element ISSod25 family transposase	NA	NA	NA	NA
2278543:2278602	attL	NA	NA	NA	NA
WP_164925693.1\|2280117_2280453_+	FRG domain-containing protein	Q9AZ51	Lactococcus_phage	1.2e-05	40.0
WP_141135407.1\|2280507_2281666_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925694.1\|2281804_2282071_+	hypothetical protein	NA	NA	NA	NA
WP_164925695.1\|2282446_2282995_+	hypothetical protein	NA	NA	NA	NA
WP_141135407.1\|2283279_2284439_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011072210.1\|2285018_2285981_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_011072211.1\|2286171_2287962_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_011072212.1\|2288028_2288247_-	YejL family protein	NA	NA	NA	NA
WP_011072213.1\|2288324_2289353_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	2.0e-62	36.5
WP_011072214.1\|2289448_2290450_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_011072215.1\|2290978_2291854_+	6-carboxytetrahydropterin synthase	I6W6Z1	Vibriophage	1.3e-14	27.9
WP_164925869.1\|2291909_2292857_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2R3ZZL7	Microbacterium_phage	1.2e-05	40.6
WP_011072217.1\|2292910_2293171_-	DUF5062 family protein	NA	NA	NA	NA
WP_011072218.1\|2293371_2293974_-	VOC family protein	NA	NA	NA	NA
WP_011072219.1\|2294032_2294548_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_011072220.1\|2294919_2296476_-	exopolyphosphatase	NA	NA	NA	NA
WP_011071113.1\|2298232_2299189_-\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_011072221.1\|2300039_2301494_+	molecular chaperone	NA	NA	NA	NA
WP_011072222.1\|2301511_2302009_+	CreA family protein	NA	NA	NA	NA
WP_011072223.1\|2302116_2303316_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_011072224.1\|2303441_2305601_-	proteobacterial dedicated sortase system histidine kinase	NA	NA	NA	NA
WP_011072225.1\|2305633_2306326_-	proteobacterial dedicated sortase system response regulator	NA	NA	NA	NA
WP_011072226.1\|2306558_2307368_+	sortase-associated OmpA-like protein PdsO	NA	NA	NA	NA
WP_011072227.1\|2307416_2309699_+	marine proteobacterial sortase target protein	A0A2K9L4P5	Tupanvirus	2.6e-22	21.1
WP_164925697.1\|2309719_2310487_+	class GN sortase	NA	NA	NA	NA
WP_011072229.1\|2310823_2311849_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.6e-11	24.7
WP_164925698.1\|2312010_2313636_+	M28 family peptidase	NA	NA	NA	NA
WP_164925870.1\|2313691_2314528_-	hypothetical protein	NA	NA	NA	NA
WP_011072233.1\|2315973_2316432_-	DUF413 domain-containing protein	NA	NA	NA	NA
WP_011072234.1\|2316540_2317401_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_011072235.1\|2317497_2317869_-	diacylglycerol kinase	NA	NA	NA	NA
WP_164925699.1\|2318117_2319029_+	DNA ligase	F2Y2Y2	Organic_Lake_phycodnavirus	2.4e-35	35.4
WP_172966576.1\|2320162_2320603_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011071113.1\|2321104_2322061_-\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_011072208.1\|2322460_2323324_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011071694.1\|2323302_2324421_+\|transposase	IS91-like element ISSod25 family transposase	NA	NA	NA	NA
WP_011072238.1\|2324801_2326424_+	alpha-glucosidase	NA	NA	NA	NA
2323325:2324754	attR	NA	NA	NA	NA
WP_011072239.1\|2327974_2329189_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_011072240.1\|2329351_2331610_+	EAL domain-containing protein	G3MA91	Bacillus_virus	9.3e-20	35.9
WP_011072241.1\|2331690_2332701_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_011072242.1\|2332945_2334346_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	2.5e-79	36.0
WP_011072243.1\|2334541_2334883_+	hypothetical protein	NA	NA	NA	NA
WP_011072244.1\|2334900_2335488_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_011072245.1\|2335515_2336919_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	2.9e-48	46.6
WP_011072246.1\|2337041_2338592_+	fumarate hydratase	NA	NA	NA	NA
WP_164925700.1\|2338817_2340869_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_011072248.1\|2341035_2341494_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011072249.1\|2341549_2342485_+	M14 family metallocarboxypeptidase	NA	NA	NA	NA
WP_011070548.1\|2342947_2344162_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9

DBSCAN-SWA_8

2376467 : 2429009

uncultured_virus(16.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011072273.1\|2376467_2377193_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_011072274.1\|2377239_2378061_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_011072275.1\|2378414_2378876_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_011072276.1\|2378954_2380169_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.1e-33	31.8
WP_011072277.1\|2380206_2380590_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.0e-51	77.4
WP_011072278.1\|2380604_2380928_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.1e-22	43.0
WP_011072279.1\|2380943_2381468_+	co-chaperone HscB	NA	NA	NA	NA
WP_011072280.1\|2381535_2383398_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.7e-105	39.3
WP_011072281.1\|2383406_2383742_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011072282.1\|2383897_2384797_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	1.9e-40	33.6
WP_011072283.1\|2384867_2385065_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005054087.1\|2385141_2386344_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011072284.1\|2386581_2386749_+	hypothetical protein	NA	NA	NA	NA
WP_011072285.1\|2386979_2387411_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	4.8e-18	40.9
WP_011072286.1\|2387575_2388601_+\|transposase	IS630-like element ISSod10 family transposase	M4M9P8	Vibrio_phage	2.5e-12	71.7
WP_011072287.1\|2388816_2389260_+	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	2.4e-20	49.5
WP_011072288.1\|2389367_2389862_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_011072289.1\|2389861_2391580_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-58	30.8
WP_011072290.1\|2392030_2393254_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_011072291.1\|2393727_2395602_+	choice-of-anchor I family protein	NA	NA	NA	NA
WP_011072292.1\|2395759_2397118_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_011070548.1\|2397322_2398537_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_164925703.1\|2398643_2399564_-\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_164925704.1\|2399605_2400232_+	LysE family transporter	NA	NA	NA	NA
WP_011072293.1\|2400456_2402214_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-15	26.5
WP_011072295.1\|2403599_2404601_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_011072296.1\|2405207_2406410_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011072297.1\|2407401_2408781_-	MATE family efflux transporter	NA	NA	NA	NA
WP_011072298.1\|2408814_2409435_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	4.6e-22	38.2
WP_011072299.1\|2409443_2409644_-	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
WP_011072301.1\|2410459_2412388_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.6
WP_011072302.1\|2412391_2412934_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.4e-13	37.1
WP_011072303.1\|2413019_2413214_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006081652.1\|2413230_2413587_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_011072304.1\|2413768_2414722_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	2.4e-62	44.2
WP_011072305.1\|2414973_2416089_-	alanine dehydrogenase	NA	NA	NA	NA
WP_007647640.1\|2416269_2416776_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_011072306.1\|2417096_2419832_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	9.4e-83	47.5
WP_011072307.1\|2419901_2420522_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_011072308.1\|2420530_2421862_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	6.4e-77	39.2
WP_011072309.1\|2421854_2422229_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.0e-08	36.5
WP_011072310.1\|2422247_2423534_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	44.8
WP_011072312.1\|2423753_2424305_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_141135407.1\|2425117_2426276_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925705.1\|2426212_2427403_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.5e-72	77.5
WP_193378420.1\|2427435_2428611_+	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	6.3e-12	37.4
WP_011072313.1\|2428643_2429009_+	response regulator	W8CYM9	Bacillus_phage	4.2e-15	38.8

DBSCAN-SWA_9

2788310 : 2825620

Vibrio_phage(95.24%)

protease,tail,transposase,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011072597.1\|2788310_2789057_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.6e-77	60.2
WP_011072598.1\|2789209_2789434_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	2.3e-16	58.8
WP_011072599.1\|2789445_2791455_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	1.2e-276	70.5
WP_011072600.1\|2791499_2792456_+	AAA family ATPase	M4M9P4	Vibrio_phage	5.7e-120	71.1
WP_011072601.1\|2792463_2792718_+	phage protein	NA	NA	NA	NA
WP_164925723.1\|2792717_2793035_+	hypothetical protein	NA	NA	NA	NA
WP_011072603.1\|2793038_2793266_+	phage protein	NA	NA	NA	NA
WP_011072604.1\|2793268_2793589_+	Mu phage protein Kil	NA	NA	NA	NA
WP_011072605.1\|2793603_2794224_+	DUF3164 family protein	M4MHH7	Vibrio_phage	1.5e-76	70.6
WP_011072607.1\|2794488_2794725_+	phage protein	M4MCS5	Vibrio_phage	5.7e-13	48.7
WP_011072608.1\|2794708_2794891_+	phage protein	NA	NA	NA	NA
WP_011072609.1\|2794883_2795555_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	3.3e-29	38.2
WP_011072610.1\|2795638_2795932_+	phage protein	NA	NA	NA	NA
WP_011072611.1\|2795967_2796225_+	hypothetical protein	A0A2I7S9D2	Vibrio_phage	4.1e-17	67.2
WP_011072612.1\|2796234_2796801_+	phage protein	NA	NA	NA	NA
WP_011072613.1\|2796809_2797343_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	6.7e-54	60.0
WP_164925724.1\|2797329_2797614_+	hypothetical protein	NA	NA	NA	NA
WP_011072615.1\|2797703_2798141_+	Mu phage middle operon regulator Mor	M4MHG9	Vibrio_phage	2.1e-45	65.6
WP_011072616.1\|2798157_2798352_+	hypothetical protein	NA	NA	NA	NA
WP_011072617.1\|2798398_2798845_+	hypothetical protein	NA	NA	NA	NA
WP_011072618.1\|2798921_2799512_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	2.2e-61	63.0
WP_011072619.1\|2799511_2799772_+	phage protein	NA	NA	NA	NA
WP_011072620.1\|2799756_2800365_+	hypothetical protein	M4MB79	Vibrio_phage	1.5e-44	59.2
WP_011072621.1\|2800364_2800580_+	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	3.6e-14	55.7
WP_011072622.1\|2800579_2800882_+	DUF2730 domain-containing protein	M4M9P7	Vibrio_phage	1.6e-36	74.0
WP_011072623.1\|2800890_2801181_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	7.7e-36	78.1
WP_011072624.1\|2801190_2801772_+	DUF3486 family protein	M4MCR3	Vibrio_phage	3.9e-63	71.1
WP_011072625.1\|2801771_2801966_+	hypothetical protein	M4MB75	Vibrio_phage	6.5e-15	66.1
WP_011072626.1\|2801968_2803528_+	hypothetical protein	M4MHG0	Vibrio_phage	3.5e-228	76.2
WP_011072627.1\|2803524_2805090_+	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	1.1e-224	74.2
WP_011072628.1\|2805082_2805862_+	phage protein	M4M9M5	Vibrio_phage	6.3e-117	74.0
WP_164925725.1\|2806083_2806287_+	hypothetical protein	NA	NA	NA	NA
WP_011072630.1\|2806273_2806501_+	phage protein	A0A1V0E828	Vibrio_phage	1.1e-16	70.1
WP_011072631.1\|2806696_2807656_+\|protease	Mu phage protease GpI	M1Q578	Vibrio_phage	1.5e-91	52.5
WP_011072632.1\|2807655_2808555_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7S9D0	Vibrio_phage	9.7e-138	79.9
WP_011072633.1\|2808612_2808861_+	phage protein	M4MHF5	Vibrio_phage	1.3e-20	57.3
WP_011072634.1\|2808864_2809425_+	phage protein	M4M9N9	Vibrio_phage	2.4e-49	56.7
WP_011072635.1\|2809463_2810123_+	phage protein	M4M9M3	Vibrio_phage	1.1e-16	51.5
WP_011072636.1\|2810154_2810586_+	DUF1320 domain-containing protein	M1PVU7	Vibrio_phage	1.1e-57	77.8
WP_011072637.1\|2810585_2811137_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.4e-75	77.7
WP_011072638.1\|2811133_2811724_+	hypothetical protein	M4MHF0	Vibrio_phage	3.3e-78	67.3
WP_011072639.1\|2811740_2811905_+	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	2.9e-08	52.2
WP_011072640.1\|2811907_2813389_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	2.1e-238	84.4
WP_011072641.1\|2813405_2813759_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	1.1e-47	76.9
WP_011072642.1\|2813758_2814118_+\|tail	phage tail assembly protein	A0A2I7S9E0	Vibrio_phage	1.7e-37	64.1
WP_164925882.1\|2814363_2815905_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	1.1e-136	55.7
WP_011072644.1\|2815926_2817243_+	DNA circularization N-terminal domain-containing protein	M4M9N2	Vibrio_phage	9.2e-169	68.3
WP_011072645.1\|2817242_2818322_+	hypothetical protein	M1PVV2	Vibrio_phage	1.0e-165	77.9
WP_011072646.1\|2818315_2818963_+\|plate	phage baseplate assembly protein	M1Q572	Vibrio_phage	9.3e-74	68.2
WP_011072647.1\|2818974_2819421_+	phage GP46 family protein	M4MB61	Vibrio_phage	6.7e-55	72.7
WP_011072648.1\|2819410_2820478_+\|plate	baseplate J/gp47 family protein	M4MHE1	Vibrio_phage	6.3e-160	79.7
WP_011072649.1\|2820462_2821047_+	YmfQ family protein	M4M9M8	Vibrio_phage	8.4e-90	79.8
WP_011072650.1\|2821112_2822840_+	SGNH/GDSL hydrolase family protein	M4M9L1	Vibrio_phage	8.7e-26	47.5
WP_011072651.1\|2822983_2825620_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	4.0e-91	34.6

DBSCAN-SWA_10

3038316 : 3126253

100

Vibrio_phage(31.71%)

protease,tail,terminase,portal,transposase,head,capsid,integrase

attL 3037776:3037790|attR 3130139:3130153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3037776:3037790	attL	NA	NA	NA	NA
WP_011071731.1\|3038316_3039075_+\|transposase	IS5-like element ISSod6 family transposase	A0A0N9SHJ4	Paenibacillus_phage	7.9e-16	36.4
WP_011072816.1\|3040156_3041131_-	formate transporter FocA	NA	NA	NA	NA
WP_011072817.1\|3042165_3044448_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.2e-168	41.7
WP_011072818.1\|3044511_3045252_+	pyruvate formate lyase 1-activating protein	NA	NA	NA	NA
WP_164925888.1\|3045268_3045751_-	DUF412 family protein	NA	NA	NA	NA
WP_011072820.1\|3045852_3047052_+	acetate kinase	NA	NA	NA	NA
WP_011072821.1\|3047173_3049327_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_011072822.1\|3049789_3050221_+	hypothetical protein	NA	NA	NA	NA
WP_164925730.1\|3050484_3050736_+	hypothetical protein	NA	NA	NA	NA
WP_011072824.1\|3050822_3051734_-	S-adenosylmethionine-dependent methyltransferase	NA	NA	NA	NA
WP_011072825.1\|3051740_3052847_-	AI-2E family transporter	NA	NA	NA	NA
WP_011072826.1\|3052945_3053314_+	dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA
WP_011072827.1\|3053395_3054286_+	TIGR01777 family protein	NA	NA	NA	NA
WP_011072828.1\|3054832_3056056_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_011072829.1\|3056119_3056782_-	signal peptidase I	NA	NA	NA	NA
WP_011072830.1\|3057044_3059552_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_011072831.1\|3059555_3060317_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.9e-32	37.8
WP_011072832.1\|3060369_3060969_+	arylesterase	NA	NA	NA	NA
WP_011072833.1\|3061113_3062181_+	DUF3083 family protein	NA	NA	NA	NA
WP_011072834.1\|3062437_3065161_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_011072835.1\|3065279_3066452_+	hypothetical protein	NA	NA	NA	NA
WP_011072836.1\|3066683_3067745_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_164925731.1\|3067938_3068955_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.7e-21	27.8
WP_011072838.1\|3069067_3071551_-	lipase	NA	NA	NA	NA
WP_011072839.1\|3071811_3072549_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_011072840.1\|3072640_3073612_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_011072841.1\|3073725_3074601_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_011072842.1\|3074869_3075412_+	hypothetical protein	NA	NA	NA	NA
WP_011072843.1\|3075412_3076123_-	hypothetical protein	NA	NA	NA	NA
WP_011072845.1\|3076446_3080472_-	DUF1983 domain-containing protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	53.9
WP_011072846.1\|3080476_3081106_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	1.1e-63	66.0
WP_011072847.1\|3081182_3081749_-	Lambda phage transcriptional regulator	NA	NA	NA	NA
WP_011072848.1\|3082151_3083747_-	Lambda phage structural protein	NA	NA	NA	NA
WP_011072849.1\|3083758_3084664_-\|tail	Lambda phage tail fiber protein	NA	NA	NA	NA
WP_164925732.1\|3084703_3085498_-	hypothetical protein	NA	NA	NA	NA
WP_011072851.1\|3085494_3085767_-	Lambda phage protein of known function	NA	NA	NA	NA
WP_011072852.1\|3085849_3086563_-	C40 family peptidase	A0A1V1FD38	Vibrio_phage	5.3e-70	53.6
WP_011072853.1\|3086614_3087340_-\|tail	phage minor tail protein L	A0A1V0E876	Vibrio_phage	7.4e-96	64.9
WP_011072854.1\|3087332_3087992_-	hypothetical protein	NA	NA	NA	NA
WP_011072855.1\|3087994_3090109_-	Lambda phage protein of known function	A0A1B1ITM8	uncultured_Mediterranean_phage	4.7e-58	28.7
WP_011072856.1\|3090142_3090478_-\|tail	phage tail protein	A0A1V1FDP8	Vibrio_phage	3.5e-32	60.7
WP_011072857.1\|3090477_3093222_-\|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	5.7e-221	48.5
WP_011072858.1\|3093293_3093446_-	hypothetical protein	NA	NA	NA	NA
WP_011072859.1\|3093484_3093979_-\|tail	phage tail assembly chaperone family protein, TAC	B5WZT2	Pseudomonas_phage	2.8e-06	36.8
WP_011072860.1\|3094066_3094540_-\|tail	tail protein	A0A1V0E8B3	Vibrio_phage	8.1e-51	64.7
WP_011072861.1\|3094634_3095003_-	DUF3168 domain-containing protein	A0A1V0E8A7	Vibrio_phage	2.1e-38	61.5
WP_011072862.1\|3094999_3095461_-	HK97 gp10 family phage protein	A0A1V0E895	Vibrio_phage	3.8e-45	61.1
WP_011072863.1\|3095463_3095700_-	phage protein	NA	NA	NA	NA
WP_011072864.1\|3095702_3096065_-\|head	phage head closure protein	Q9XJT0	Pseudomonas_phage	9.9e-33	57.1
WP_011072865.1\|3096064_3096361_-\|head,tail	phage gp6-like head-tail connector protein	A0A1V0E887	Vibrio_phage	1.2e-23	55.9
WP_011072866.1\|3096382_3096667_-	hypothetical protein	NA	NA	NA	NA
WP_011072867.1\|3096755_3097946_-\|capsid	phage major capsid protein	Q9XJT3	Pseudomonas_phage	3.4e-130	62.9
WP_011072868.1\|3097958_3098813_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	1.2e-81	57.9
WP_011072869.1\|3098822_3100121_-\|portal	phage portal protein	A0A0U4IIV7	Pseudomonas_phage	1.5e-139	62.1
WP_011072870.1\|3100117_3100279_-	hypothetical protein	NA	NA	NA	NA
WP_165443313.1\|3100278_3102024_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	46.6
WP_165443314.1\|3101980_3102493_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.9e-39	53.6
WP_011072872.1\|3102504_3102834_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	1.4e-30	55.2
WP_011072873.1\|3102830_3103190_-	phage protein	NA	NA	NA	NA
WP_011072874.1\|3103182_3103452_-	hypothetical protein	A0A1B1ITN8	uncultured_Mediterranean_phage	7.4e-09	49.3
WP_011072875.1\|3103568_3104093_-	hypothetical protein	NA	NA	NA	NA
WP_011072876.1\|3104247_3104760_-	lysozyme	I6NW41	Burkholderia_virus	3.3e-42	52.9
WP_011072877.1\|3104763_3105027_-	Lambda phage pyridoxal phosphate dependent enzyme	D4HTY9	Vibrio_phage	5.0e-18	55.8
WP_011072878.1\|3105184_3105475_-	Lambda phage conserved protein	NA	NA	NA	NA
WP_011072879.1\|3105503_3105839_-	phage protein	NA	NA	NA	NA
WP_011072880.1\|3105864_3106188_-	DUF4406 domain-containing protein	O64365	Escherichia_phage	6.6e-20	51.7
WP_011072882.1\|3106444_3106696_-	phage protein	NA	NA	NA	NA
WP_011072883.1\|3106803_3108003_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	1.2e-66	36.7
WP_011072884.1\|3108002_3108602_-	phage protein	NA	NA	NA	NA
WP_011072885.1\|3108601_3109168_-	hypothetical protein	NA	NA	NA	NA
WP_164925889.1\|3109168_3109609_-	hypothetical protein	NA	NA	NA	NA
WP_011072887.1\|3109743_3110259_-	hypothetical protein	A0A1B1ITL2	uncultured_Mediterranean_phage	4.4e-26	41.6
WP_011072888.1\|3110255_3110648_-	hypothetical protein	NA	NA	NA	NA
WP_011072889.1\|3110631_3111192_-	hypothetical protein	A0A2D1GNB3	Pseudomonas_phage	3.8e-07	30.2
WP_011072890.1\|3111163_3112234_-	replication protein	A0A1I9KG10	Aeromonas_phage	9.4e-55	44.7
WP_011072891.1\|3112290_3112584_-	hypothetical protein	NA	NA	NA	NA
WP_011072892.1\|3112583_3112778_-	hypothetical protein	NA	NA	NA	NA
WP_011072894.1\|3113307_3113535_-	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	6.7e-11	44.9
WP_011072895.1\|3113663_3114482_+	helix-turn-helix transcriptional regulator	A0A0A0YR73	Pseudomonas_phage	2.2e-51	43.9
WP_011072896.1\|3114502_3114925_+	Lambda phage lipoprotein	A0A1B0VMH3	Pseudomonas_phage	4.3e-19	38.5
WP_011072897.1\|3114947_3115253_+	hypothetical protein	NA	NA	NA	NA
WP_011072898.1\|3115884_3116073_+	phage protein	NA	NA	NA	NA
WP_011072899.1\|3116134_3116878_+	methyltransferase	A0A1P8VVC9	Erythrobacter_phage	1.8e-28	35.3
WP_164925582.1\|3117008_3117245_+	hypothetical protein	NA	NA	NA	NA
WP_011072901.1\|3117305_3117719_+	phage protein	NA	NA	NA	NA
WP_011072902.1\|3117711_3117993_+	hypothetical protein	NA	NA	NA	NA
WP_011072903.1\|3118076_3118241_+	hypothetical protein	NA	NA	NA	NA
WP_011072904.1\|3118250_3118838_+	ead/Ea22-like family protein	NA	NA	NA	NA
WP_011072905.1\|3118834_3119224_+	hypothetical protein	A0A1I9SEY3	Klebsiella_phage	9.7e-26	55.9
WP_011072906.1\|3119220_3119892_+	hypothetical protein	A0A059WLH8	Vibrio_phage	4.7e-36	40.3
WP_011072907.1\|3119888_3120236_+	hypothetical protein	A0A2I7RQ60	Vibrio_phage	1.2e-08	43.4
WP_011072908.1\|3120232_3121198_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.3e-76	45.9
WP_011072909.1\|3121194_3121692_+	phage protein	NA	NA	NA	NA
WP_011072910.1\|3121688_3123362_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	1.7e-167	55.0
WP_011072913.1\|3123706_3124120_+	phage protein	NA	NA	NA	NA
WP_011072914.1\|3124119_3124395_+	phage protein	NA	NA	NA	NA
WP_164925733.1\|3124378_3124582_+	hypothetical protein	NA	NA	NA	NA
WP_011072916.1\|3124578_3124776_+	phage protein	NA	NA	NA	NA
WP_011072917.1\|3124775_3124988_+	Lambda phage DNA excisionase Xis	NA	NA	NA	NA
WP_011072918.1\|3124993_3126253_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	1.2e-77	40.0
3130139:3130153	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3569758 : 3584788

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011073284.1\|3569758_3572383_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.6e-79	39.0
WP_164925902.1\|3572661_3573084_-	RecX family transcriptional regulator	NA	NA	NA	NA
WP_011073286.1\|3573158_3574232_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-111	61.9
WP_011073287.1\|3574612_3577183_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.0e-31	23.2
WP_011073288.1\|3577265_3578246_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.4e-33	32.9
WP_011073289.1\|3578327_3579224_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.2e-10	31.9
WP_011073290.1\|3579281_3579917_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.1e-34	50.6
WP_011073291.1\|3579913_3580663_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-72	53.1
WP_011073292.1\|3580659_3581772_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011073293.1\|3581800_3582280_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011073294.1\|3582332_3583082_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011073295.1\|3583092_3583392_-	cell division protein FtsB	NA	NA	NA	NA
WP_011073296.1\|3583492_3584788_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.3e-132	58.7

DBSCAN-SWA_12

3587898 : 3674069

Staphylococcus_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005054087.1\|3587898_3589101_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011072944.1\|3589378_3590002_+	suppressor of fused domain protein	NA	NA	NA	NA
WP_011072943.1\|3591029_3592007_+\|transposase	transposase	NA	NA	NA	NA
WP_011073299.1\|3592488_3593247_-	WGR domain-containing protein	NA	NA	NA	NA
WP_164925750.1\|3593569_3593890_+	hypothetical protein	NA	NA	NA	NA
WP_005054087.1\|3594234_3595437_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011073301.1\|3596505_3597717_+	hypothetical protein	NA	NA	NA	NA
WP_011073302.1\|3598099_3600307_-	GTP diphosphokinase	NA	NA	NA	NA
WP_011073303.1\|3600497_3601847_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.8e-37	27.4
WP_011073304.1\|3601949_3604757_+	two-component sensor histidine kinase BarA	A0A1V0SGX0	Hokovirus	5.9e-56	30.5
WP_011073305.1\|3604731_3605331_+	YjaG family protein	NA	NA	NA	NA
WP_011073306.1\|3605486_3605726_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_011073307.1\|3605722_3606622_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011073308.1\|3606896_3607856_+	AEC family transporter	NA	NA	NA	NA
WP_011073309.1\|3607985_3609644_+	DNA repair protein RecN	NA	NA	NA	NA
WP_011073310.1\|3609780_3610275_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_011073311.1\|3610274_3611231_-	thiamine-phosphate kinase	NA	NA	NA	NA
WP_011073312.1\|3611309_3611714_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_011073313.1\|3611728_3612205_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-29	45.7
WP_011073314.1\|3612345_3613449_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.3e-69	40.5
WP_011073315.1\|3613515_3614172_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.6e-27	33.5
WP_011073316.1\|3614179_3615325_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.2e-51	35.5
WP_011073317.1\|3615398_3615848_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011073318.1\|3616038_3617292_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.7e-101	53.1
WP_011073319.1\|3617482_3619150_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	5.6e-38	27.7
WP_011073320.1\|3619276_3620200_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011073321.1\|3620398_3621298_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_164925903.1\|3621421_3622075_+	DsbA family protein	NA	NA	NA	NA
WP_011073323.1\|3622202_3622538_-	TapY2 family type IVa secretion system protein	NA	NA	NA	NA
WP_011071076.1\|3624621_3625380_+\|transposase	IS5-like element ISSod6 family transposase	A0A0N9SHJ4	Paenibacillus_phage	7.9e-16	36.4
WP_011073324.1\|3627607_3628762_+	metallophosphoesterase	A0A1V0SFZ7	Hokovirus	2.0e-18	27.3
WP_011073325.1\|3628937_3629732_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011073326.1\|3629931_3631041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011073327.1\|3631040_3634181_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011073328.1\|3634283_3635432_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_011073329.1\|3635855_3636623_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011073330.1\|3636802_3637741_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_011073331.1\|3638077_3638551_+	NYN domain-containing protein	NA	NA	NA	NA
WP_011073332.1\|3638563_3639832_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_011073333.1\|3639968_3643112_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.3e-67	22.8
WP_011073334.1\|3643125_3644364_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011073335.1\|3644723_3645344_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011073336.1\|3645449_3645878_-	OsmC family protein	NA	NA	NA	NA
WP_011073337.1\|3646150_3647647_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011073338.1\|3647928_3649269_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_011073339.1\|3650065_3651280_+\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	1.8e-123	55.7
WP_011073340.1\|3652176_3652551_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011073341.1\|3652722_3653445_+	TIGR02001 family outer membrane protein	NA	NA	NA	NA
WP_011073342.1\|3653565_3654873_-	sugar MFS transporter	NA	NA	NA	NA
WP_011073343.1\|3655213_3656401_-	DUF5009 domain-containing protein	NA	NA	NA	NA
WP_011073344.1\|3656539_3657676_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_011073345.1\|3657720_3658719_-	SIS domain-containing protein	NA	NA	NA	NA
WP_011073346.1\|3658785_3659688_-	ATPase	NA	NA	NA	NA
WP_011073347.1\|3659911_3662602_-	carbohydate-binding domain-containing protein	A0A076G5S5	Staphylococcus_phage	1.0e-09	23.3
WP_011073348.1\|3664757_3665447_-	SapC family protein	NA	NA	NA	NA
WP_011073349.1\|3665482_3667006_-	tryptophan 7-halogenase	A0A1Z1LWL6	Synechococcus_phage	3.8e-49	30.8
WP_011073350.1\|3667102_3669727_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011073351.1\|3670152_3671169_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-29	29.4
WP_011073352.1\|3671368_3672658_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005054087.1\|3672866_3674069_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6

DBSCAN-SWA_13

3698989 : 3768910

uncultured_Caudovirales_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011073373.1\|3698989_3700030_+\|transposase	IS481-like element ISSod13 family transposase	A0A077SLK2	Escherichia_phage	3.0e-175	84.4
WP_011071337.1\|3700145_3701468_-\|transposase	IS4-like element ISSod7 family transposase	NA	NA	NA	NA
WP_164925751.1\|3701753_3702866_+	OmpA family protein	NA	NA	NA	NA
WP_011073375.1\|3703110_3704067_+	transaldolase	A0A222YW60	Synechococcus_phage	1.4e-12	28.3
WP_011073376.1\|3704087_3705725_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_011073377.1\|3705940_3706126_+	DUF3545 family protein	NA	NA	NA	NA
WP_011073378.1\|3706207_3706744_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_011073379.1\|3706961_3707711_-	hypothetical protein	NA	NA	NA	NA
WP_011073380.1\|3707703_3708306_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011073381.1\|3708353_3710219_-	VWA domain-containing protein	NA	NA	NA	NA
WP_164925752.1\|3710431_3712186_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.2e-30	25.7
WP_011073383.1\|3712448_3712940_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-17	41.1
WP_011073384.1\|3712939_3714037_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_011073385.1\|3714185_3715448_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_011073386.1\|3715499_3716117_-	hypothetical protein	NA	NA	NA	NA
WP_164925753.1\|3716539_3717001_-	hypothetical protein	NA	NA	NA	NA
WP_011073388.1\|3717000_3718650_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_011073389.1\|3718887_3721737_-	insulinase family protein	NA	NA	NA	NA
WP_011073390.1\|3721878_3722304_-	DedA family protein	NA	NA	NA	NA
WP_011073391.1\|3722591_3723833_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_011073392.1\|3723900_3724524_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_011073393.1\|3724744_3726895_-	M3 family metallopeptidase	NA	NA	NA	NA
WP_011073394.1\|3727578_3729636_+	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
WP_011070548.1\|3730775_3731990_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_141135407.1\|3732348_3733507_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011073395.1\|3733675_3734314_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_011073396.1\|3740692_3741502_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_011073397.1\|3741592_3742057_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_011073398.1\|3742478_3745052_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	5.5e-125	34.4
WP_011073399.1\|3745170_3745944_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_011073400.1\|3745947_3746919_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_011073401.1\|3747041_3747803_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_011073402.1\|3748529_3750155_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-38	34.2
WP_011073403.1\|3750258_3750972_-	pseudouridine synthase	NA	NA	NA	NA
WP_011073404.1\|3750993_3751614_-	transcriptional regulator	NA	NA	NA	NA
WP_011073405.1\|3751760_3752375_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011073406.1\|3752414_3752831_+	VOC family protein	NA	NA	NA	NA
WP_011073407.1\|3752992_3753463_+	YcxB family protein	NA	NA	NA	NA
WP_011073408.1\|3753547_3754117_-	hypothetical protein	NA	NA	NA	NA
WP_011073409.1\|3754834_3755071_+	hypothetical protein	NA	NA	NA	NA
WP_011073410.1\|3755420_3756284_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_164925905.1\|3756310_3756703_+	DUF3019 domain-containing protein	NA	NA	NA	NA
WP_011073412.1\|3756702_3757416_+	response regulator	W8CYM9	Bacillus_phage	1.6e-34	34.5
WP_011073413.1\|3757424_3758693_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	7.8e-16	25.6
WP_011073414.1\|3758848_3759157_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_011073415.1\|3759304_3759841_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_011073416.1\|3759969_3760848_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	1.8e-51	40.1
WP_011073417.1\|3761068_3762076_+	thiosulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA
WP_011073418.1\|3762251_3763097_+	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA
WP_011073419.1\|3763106_3763976_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_011073420.1\|3763972_3765103_+	TOBE-like domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-32	38.9
WP_164925754.1\|3765225_3766362_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_011073421.1\|3766394_3767597_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	8.6e-81	75.1
WP_141135407.1\|3767750_3768910_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6

DBSCAN-SWA_14

3975439 : 4026725

uncultured_virus(30.77%)

tRNA,transposase,integrase

attL 3976837:3976855|attR 4023568:4023586

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005054087.1\|3975439_3976642_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
3976837:3976855	attL	NA	NA	NA	NA
WP_011073591.1\|3977383_3978232_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.9e-51	43.3
WP_011073592.1\|3978295_3979543_-	DUF819 family protein	NA	NA	NA	NA
WP_011073593.1\|3979684_3980473_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011073594.1\|3980472_3980868_-	SirB2 family protein	NA	NA	NA	NA
WP_011073595.1\|3980986_3981400_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011073596.1\|3981546_3982407_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_011073597.1\|3982409_3983501_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.6e-07	38.5
WP_011073598.1\|3983515_3984766_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_011073599.1\|3985020_3985665_+	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_011073600.1\|3985666_3986521_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_011073601.1\|3986633_3987581_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.5e-43	37.5
WP_011073602.1\|3987654_3989517_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.9e-37	31.5
WP_011073603.1\|3989922_3990456_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_011073604.1\|3990455_3991049_+	anti-sigma factor	NA	NA	NA	NA
WP_011073605.1\|3991045_3992002_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_011073606.1\|3992074_3992764_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_011073607.1\|3993109_3995194_+	M13 family peptidase	A0A1V0SHG2	Klosneuvirus	5.3e-94	30.6
WP_011073608.1\|3995404_3996190_+	RelA/SpoT domain-containing protein	NA	NA	NA	NA
WP_011073609.1\|3996394_3996802_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011073610.1\|3996847_3997348_+	DUF4447 family protein	NA	NA	NA	NA
WP_011073611.1\|3997700_3998243_+	PH domain-containing protein	NA	NA	NA	NA
WP_037422212.1\|3998726_3999191_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.8e-32	44.0
WP_011073613.1\|3999532_4000456_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.0e-142	79.1
WP_011073614.1\|4000797_4002486_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_011073615.1\|4002559_4002994_-	DUF3069 domain-containing protein	NA	NA	NA	NA
WP_011073616.1\|4003017_4003545_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005054087.1\|4003663_4004866_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_011073617.1\|4005000_4006896_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.5e-18	34.4
WP_011073618.1\|4006897_4007695_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011073619.1\|4007856_4009038_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_011073620.1\|4009057_4009837_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_011073621.1\|4010039_4010825_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011073622.1\|4010824_4011562_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_011073623.1\|4011555_4012641_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.5e-23	33.3
WP_011073624.1\|4012956_4014231_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011073625.1\|4014245_4014473_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_172966569.1\|4014638_4014872_+	hypothetical protein	NA	NA	NA	NA
WP_172966570.1\|4014920_4015967_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_011073626.1\|4016386_4017025_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_011073627.1\|4017036_4017648_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_011073628.1\|4018065_4019856_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA
WP_011073629.1\|4019909_4020665_+	hypothetical protein	NA	NA	NA	NA
WP_011073630.1\|4021228_4022200_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005054087.1\|4023619_4024822_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
4023568:4023586	attR	NA	NA	NA	NA
WP_164925766.1\|4025078_4025468_+	hypothetical protein	NA	NA	NA	NA
WP_011073631.1\|4025519_4026725_+\|transposase	IS256-like element ISSod5 family transposase	A0A218MNI5	uncultured_virus	2.0e-77	75.0

DBSCAN-SWA_15

4282928 : 4356783

Tupanvirus(11.11%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011073824.1\|4282928_4284674_+\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	1.1e-92	35.1
WP_011073825.1\|4284677_4285373_+	cell division protein FtsN	NA	NA	NA	NA
WP_011073826.1\|4285690_4285915_+	hypothetical protein	NA	NA	NA	NA
WP_011073827.1\|4286112_4287048_-	paraslipin	NA	NA	NA	NA
WP_011073828.1\|4287047_4287983_-	paraslipin	NA	NA	NA	NA
WP_011073829.1\|4288000_4288465_-	NfeD family protein	NA	NA	NA	NA
WP_011073830.1\|4288950_4289703_+	ion channel protein Tsx	NA	NA	NA	NA
WP_011073831.1\|4289817_4290576_-	uridine phosphorylase	NA	NA	NA	NA
WP_011073832.1\|4290988_4291201_+	DUF465 domain-containing protein	NA	NA	NA	NA
WP_011073833.1\|4291320_4292643_+\|transposase	IS4-like element ISSod7 family transposase	NA	NA	NA	NA
WP_011073834.1\|4292690_4293866_-	type III PLP-dependent enzyme	A0A0P0YM38	Yellowstone_lake_phycodnavirus	3.4e-42	30.0
WP_011073835.1\|4294270_4294753_-	periplasmic protein	NA	NA	NA	NA
WP_011073836.1\|4294989_4296534_+	sel1 repeat family protein	NA	NA	NA	NA
WP_011073837.1\|4296611_4297451_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011073838.1\|4297611_4298343_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011073839.1\|4298867_4299197_+	c-type cytochrome	NA	NA	NA	NA
WP_011073840.1\|4299376_4301101_+	DUF3373 domain-containing protein	NA	NA	NA	NA
WP_011073841.1\|4301158_4302544_+	tetrathionate reductase family octaheme c-type cytochrome	NA	NA	NA	NA
WP_011073842.1\|4302777_4304280_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011073843.1\|4304543_4306193_+	ATP-binding cassette domain-containing protein	F2Y165	Organic_Lake_phycodnavirus	1.2e-08	23.3
WP_011073844.1\|4306195_4308280_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	8.0e-18	24.5
WP_011073845.1\|4308272_4309598_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_011073846.1\|4309610_4324673_+	VCBS domain-containing protein	NA	NA	NA	NA
WP_164925781.1\|4324919_4326080_+	sulfate transporter	NA	NA	NA	NA
WP_011073848.1\|4326140_4327145_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011073849.1\|4327141_4327786_-	ester cyclase	NA	NA	NA	NA
WP_011073850.1\|4327785_4328922_-	alkene reductase	NA	NA	NA	NA
WP_011073851.1\|4329033_4329945_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_164925920.1\|4330023_4331835_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_011073853.1\|4332030_4332639_+	response regulator transcription factor	NA	NA	NA	NA
WP_011073854.1\|4333082_4333664_+	type II secretion system protein	NA	NA	NA	NA
WP_011073855.1\|4333908_4335087_+	flagellin lysine-N-methylase	NA	NA	NA	NA
WP_011073856.1\|4335340_4335865_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_011073857.1\|4335883_4337206_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	1.6e-43	28.5
WP_011073858.1\|4337351_4337738_+	DUF971 domain-containing protein	NA	NA	NA	NA
WP_164925782.1\|4338056_4338380_-	hypothetical protein	NA	NA	NA	NA
WP_005054087.1\|4338425_4339628_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	1.7e-81	75.6
WP_164925783.1\|4339624_4340206_-	hypothetical protein	NA	NA	NA	NA
WP_011073859.1\|4341821_4343387_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	7.3e-48	28.3
WP_011073860.1\|4343412_4344123_+	SDR family oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	5.9e-29	35.4
WP_011073861.1\|4344167_4344644_-	hypothetical protein	NA	NA	NA	NA
WP_011073862.1\|4344675_4345227_-	response regulator	NA	NA	NA	NA
WP_011073863.1\|4345223_4346507_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_011073864.1\|4346509_4347430_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011073865.1\|4347610_4349458_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_011073866.1\|4349459_4349816_-	hypothetical protein	NA	NA	NA	NA
WP_011073867.1\|4349997_4351053_-	hypothetical protein	NA	NA	NA	NA
WP_011073868.1\|4351052_4352381_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_011073869.1\|4352377_4353766_-	diguanylate cyclase	NA	NA	NA	NA
WP_011073870.1\|4354048_4354966_-	RNA pseudouridylate synthase	NA	NA	NA	NA
WP_011073871.1\|4355018_4355594_-\|protease	ATP-dependent protease	NA	NA	NA	NA
WP_141135407.1\|4355623_4356783_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6

DBSCAN-SWA_16

4416263 : 4473744

uncultured_virus(13.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011070548.1\|4416263_4417478_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_011073918.1\|4418798_4420622_-	DNA helicase RecQ	A0A2K9L021	Tupanvirus	2.1e-86	37.1
WP_011073919.1\|4420873_4421338_+	thioesterase family protein	NA	NA	NA	NA
WP_011073920.1\|4421554_4422439_+	EamA family transporter RarD	NA	NA	NA	NA
WP_011073921.1\|4422482_4423001_-	hypothetical protein	NA	NA	NA	NA
WP_164925787.1\|4423105_4424425_-	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_006079871.1\|4424747_4424921_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_006079870.1\|4424927_4425164_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_011073923.1\|4425285_4425963_-	DNA repair protein RadC	NA	NA	NA	NA
WP_011073924.1\|4426082_4427312_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.0e-36	31.2
WP_011073925.1\|4427312_4427771_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	3.6e-48	60.1
WP_011073926.1\|4427802_4428396_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_011073927.1\|4428530_4430519_+	S9 family peptidase	NA	NA	NA	NA
WP_011073928.1\|4430786_4431437_+	GTP cyclohydrolase I FolE	A0A140B3H5	Vibrio_phage	1.2e-57	54.9
WP_011073929.1\|4431525_4432173_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_011073930.1\|4432346_4433060_-	ribonuclease PH	NA	NA	NA	NA
WP_011073931.1\|4433269_4434133_+	YicC family protein	NA	NA	NA	NA
WP_011070721.1\|4435229_4436432_-\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	6.6e-81	75.1
WP_164925788.1\|4436509_4437184_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_011073932.1\|4437395_4438046_+	hypothetical protein	NA	NA	NA	NA
WP_011073933.1\|4438426_4438924_-	hypothetical protein	NA	NA	NA	NA
WP_011073934.1\|4438920_4439625_-	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	1.2e-66	51.1
WP_011073935.1\|4439635_4441123_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011073936.1\|4441119_4442733_-	type I restriction-modification system subunit M	A0A220A2U5	Liberibacter_phage	9.3e-22	26.1
WP_011073937.1\|4442860_4443979_-	Fic family protein	D7RWK9	Brochothrix_phage	2.5e-18	25.8
WP_011073938.1\|4444283_4447850_-	type I restriction-modification system endonuclease	NA	NA	NA	NA
WP_164925630.1\|4447975_4449050_+\|transposase	IS3-like element ISSod2 family transposase	S5WIU1	Leptospira_phage	2.2e-43	39.4
WP_011073939.1\|4449229_4450111_+	hypothetical protein	NA	NA	NA	NA
WP_164925921.1\|4452772_4452976_-	hypothetical protein	NA	NA	NA	NA
WP_011073940.1\|4453217_4454021_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_011073941.1\|4455408_4455651_+	thioredoxin family protein	NA	NA	NA	NA
WP_141135407.1\|4455988_4457148_-\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_011073942.1\|4457401_4458379_+	TerC family protein	K7QKE8	Escherichia_phage	3.3e-38	34.9
WP_011073943.1\|4458978_4459548_-	CBS domain-containing protein	NA	NA	NA	NA
WP_011073945.1\|4460590_4461235_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_011073946.1\|4461238_4462603_+	Ktr system potassium transporter B	NA	NA	NA	NA
WP_164925922.1\|4462704_4463667_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_011073948.1\|4463873_4465079_+\|transposase	IS256-like element ISSod5 family transposase	A0A218MNI5	uncultured_virus	4.4e-77	75.0
WP_011073949.1\|4465825_4466653_-	OmpA family protein	NA	NA	NA	NA
WP_011073950.1\|4466657_4467392_-	flagellar motor protein	NA	NA	NA	NA
WP_011073951.1\|4467561_4468194_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_011073952.1\|4468446_4469196_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-17	29.7
WP_164925923.1\|4469238_4470075_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011073954.1\|4470104_4471010_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_011073955.1\|4471058_4471868_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA
WP_141135407.1\|4472585_4473744_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6

DBSCAN-SWA_17

4621280 : 4678835

Enterobacteria_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011074073.1\|4621280_4622495_-\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	3.1e-123	55.7
WP_172966530.1\|4624140_4624401_+	hypothetical protein	NA	NA	NA	NA
WP_164925703.1\|4624333_4625254_+\|transposase	IS1595-like element ISSod11 family transposase	NA	NA	NA	NA
WP_011070548.1\|4625360_4626575_+\|transposase	IS4-like element ISSod3 family transposase	A4KWT9	Enterobacteria_phage	6.3e-124	55.9
WP_164925932.1\|4626646_4627024_+	adhesin	NA	NA	NA	NA
WP_011074075.1\|4627128_4629597_+	CS1-pili formation C-terminal domain-containing protein	NA	NA	NA	NA
WP_164925794.1\|4629593_4629983_+	hypothetical protein	NA	NA	NA	NA
WP_141135407.1\|4629997_4631156_+\|transposase	IS3-like element ISSod1 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.6
WP_164925795.1\|4631179_4632040_+	hypothetical protein	NA	NA	NA	NA
WP_011074076.1\|4632042_4632681_-	response regulator transcription factor	NA	NA	NA	NA
WP_011074077.1\|4632777_4636203_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	8.2e-36	27.1
WP_011074078.1\|4636212_4637316_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.7e-23	33.2
WP_011074079.1\|4637296_4637977_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_011074080.1\|4637985_4638777_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011074081.1\|4638808_4639276_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_011074082.1\|4639277_4639529_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_011074083.1\|4639548_4640028_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_164925796.1\|4640141_4641122_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_011074085.1\|4641491_4643141_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_011074086.1\|4643442_4645359_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-37	33.4
WP_011074087.1\|4645434_4645791_-	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_011074088.1\|4645827_4646523_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_011074089.1\|4646595_4648053_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.3e-26	40.4
WP_011074090.1\|4648361_4649201_-	ribokinase	NA	NA	NA	NA
WP_011074091.1\|4649838_4650036_+	hypothetical protein	NA	NA	NA	NA
WP_011074092.1\|4650044_4650440_-	hypothetical protein	NA	NA	NA	NA
WP_011074093.1\|4650581_4651556_-	2OG-Fe(II) oxygenase	A0A1V0SIE1	Klosneuvirus	6.4e-18	35.1
WP_011074094.1\|4651849_4653949_+	5-histidylcysteine sulfoxide synthase	NA	NA	NA	NA
WP_011074095.1\|4654069_4656025_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-25	30.5
WP_011074096.1\|4656335_4656647_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_011074097.1\|4656761_4657358_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011074098.1\|4657490_4658648_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_011074099.1\|4658944_4659478_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_011074100.1\|4659599_4660646_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	3.9e-05	20.3
WP_011074101.1\|4660683_4662099_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_011074102.1\|4662168_4662735_-	porin family protein	NA	NA	NA	NA
WP_011074103.1\|4663357_4664248_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_164925933.1\|4664298_4664787_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_011074105.1\|4665133_4665820_+	response regulator	W8CYM9	Bacillus_phage	2.6e-34	36.9
WP_011074106.1\|4665834_4667184_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_011074107.1\|4667261_4669112_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011074108.1\|4669479_4671000_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011074109.1\|4671093_4671597_-	hypothetical protein	NA	NA	NA	NA
WP_011074110.1\|4671625_4672048_-	DUF2809 domain-containing protein	NA	NA	NA	NA
WP_011074111.1\|4672254_4672851_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_011074112.1\|4672884_4673319_+	DUF1924 domain-containing protein	NA	NA	NA	NA
WP_011074113.1\|4673372_4673936_+	diheme cytochrome c	NA	NA	NA	NA
WP_011074114.1\|4673928_4674195_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_011074115.1\|4674194_4674857_+	response regulator transcription factor	NA	NA	NA	NA
WP_011074116.1\|4674859_4676176_+	sensor histidine kinase	NA	NA	NA	NA
WP_011074117.1\|4676303_4676768_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011074118.1\|4676862_4677084_-	hypothetical protein	NA	NA	NA	NA
WP_011074119.1\|4677438_4677951_-	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_164925934.1\|4678221_4678458_-\|transposase	transposase	NA	NA	NA	NA
WP_164925935.1\|4678397_4678835_-\|transposase	transposase	M4M9P8	Vibrio_phage	1.3e-10	56.1

DBSCAN-SWA_18

4685651 : 4746076

uncultured_virus(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011074120.1\|4685651_4686857_+\|transposase	IS256-like element ISSod5 family transposase	A0A218MNI5	uncultured_virus	2.0e-77	75.0
WP_164925936.1\|4687333_4687702_-\|transposase	transposase	M4M9P8	Vibrio_phage	1.7e-11	56.1
WP_164925797.1\|4687604_4688060_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011074121.1\|4694296_4695202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011074122.1\|4695259_4696156_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_011074123.1\|4696451_4696916_+	DUF3305 domain-containing protein	NA	NA	NA	NA
WP_011074124.1\|4696915_4697572_+	DUF3306 domain-containing protein	NA	NA	NA	NA
WP_164925937.1\|4697757_4699419_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_011074126.1\|4699429_4700107_+	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_011074127.1\|4700269_4700467_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_011074128.1\|4700484_4703334_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_011074129.1\|4703360_4703957_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011074130.1\|4704006_4705035_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_011074131.1\|4705414_4705615_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_011074132.1\|4705632_4708485_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_011074133.1\|4708514_4709084_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011074134.1\|4709160_4710144_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_011074135.1\|4710230_4712288_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011074136.1\|4713123_4714050_-	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_011074137.1\|4714414_4715752_+	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA
WP_011074138.1\|4715869_4716103_+	Rad51 domain protein	NA	NA	NA	NA
WP_011074139.1\|4716133_4717075_+	DUF4424 domain-containing protein	NA	NA	NA	NA
WP_011074140.1\|4717128_4719120_-	ligand-gated channel protein	A0A0P0I887	Acinetobacter_phage	3.3e-13	34.8
WP_011074142.1\|4720301_4721171_+	patatin family protein	NA	NA	NA	NA
WP_011074143.1\|4721135_4722092_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011074144.1\|4722092_4722947_-	EamA family transporter	NA	NA	NA	NA
WP_011074146.1\|4724178_4724643_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_011074147.1\|4724776_4725754_+\|transposase	transposase	NA	NA	NA	NA
WP_076611923.1\|4726104_4727131_-\|transposase	IS630-like element ISSod10 family transposase	M4M9P8	Vibrio_phage	7.2e-12	69.6
WP_011074149.1\|4727785_4728340_-	hypothetical protein	NA	NA	NA	NA
WP_011074150.1\|4728586_4730614_+	S9 family peptidase	NA	NA	NA	NA
WP_011074151.1\|4730689_4732168_-	insulinase family protein	NA	NA	NA	NA
WP_011074152.1\|4732164_4733496_-	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	2.0e-22	26.9
WP_011074153.1\|4734050_4738955_-	S8 family serine peptidase	NA	NA	NA	NA
WP_011074154.1\|4739238_4740129_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_164925938.1\|4740359_4741283_+	esterase	NA	NA	NA	NA
WP_164925798.1\|4741485_4741971_-	hypothetical protein	NA	NA	NA	NA
WP_011070721.1\|4742016_4743219_+\|transposase	IS256-like element ISSod4 family transposase	A0A218MNI5	uncultured_virus	6.6e-81	75.1
WP_164925799.1\|4743215_4743440_-	hypothetical protein	NA	NA	NA	NA
WP_164925800.1\|4743559_4743700_-	hypothetical protein	NA	NA	NA	NA
WP_011074156.1\|4743915_4744893_-\|transposase	transposase	NA	NA	NA	NA
WP_011073686.1\|4745041_4746076_+\|transposase	IS110-like element ISSod14 family transposase	A0A1X9I619	Streptococcus_phage	6.8e-10	23.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_004349

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. NC_004347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection