Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014119 Paraburkholderia sp. CCGE1002 chromosome 3, complete sequence 0 crisprs csa3 0 0 3 0
NC_014120 Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence 0 crisprs NA 0 0 1 0
NC_014117 Paraburkholderia sp. CCGE1002 chromosome 1, complete sequence 1 crisprs WYL,cas3,csa3,DinG,DEDDh 0 0 3 0
NC_014118 Paraburkholderia sp. CCGE1002 chromosome 2, complete sequence 2 crisprs csa3,DinG,cas3 0 1 166 0

Results visualization

1. NC_014118
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014118_1 2048965-2049137 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014118_2 2049369-2049438 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014118_1 1.2|2049079|32|NC_014118|CRISPRCasFinder 2049079-2049110 32 MK937608 Microbacterium phage Cressida, complete genome 52043-52074 10 0.688

1. spacer 1.2|2049079|32|NC_014118|CRISPRCasFinder matches to MK937608 (Microbacterium phage Cressida, complete genome) position: , mismatch: 10, identity: 0.688

ggtttctggaagccccaacgcccccatcgaga	CRISPR spacer
aggcgggagatgccgcaacgcccccatcgagg	Protospacer
.* .   .** *** ****************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 25463 25 Indivirus(50.0%) NA NA
DBSCAN-SWA_2 63148 : 68371 6 Bacillus_virus(75.0%) NA NA
DBSCAN-SWA_3 82626 : 83544 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_4 92535 : 94344 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_5 97550 : 98381 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_6 101855 : 103421 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_7 139199 : 140720 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_8 161881 : 169401 7 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_9 174546 : 177957 3 Bathycoccus_sp._RCC1105_virus(50.0%) NA NA
DBSCAN-SWA_10 182003 : 185080 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_11 207998 : 211772 5 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_12 223913 : 226127 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_13 244476 : 248339 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_14 252294 : 256830 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_15 274067 : 277887 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_16 283656 : 284949 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_17 290819 : 295457 4 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_18 305069 : 309839 5 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_19 315357 : 316566 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_20 321898 : 326615 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_21 338331 : 340801 2 Erwinia_phage(50.0%) NA NA
DBSCAN-SWA_22 344016 : 345177 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_23 349615 : 351214 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_24 358202 : 359852 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_25 370025 : 376914 4 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_26 382756 : 383320 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_27 386343 : 387057 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_28 406435 : 410007 2 Bordetella_phage(50.0%) NA NA
DBSCAN-SWA_29 431497 : 434152 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_30 440904 : 443508 1 Feldmannia_irregularis_virus(100.0%) NA NA
DBSCAN-SWA_31 452806 : 455547 3 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_32 459374 : 460235 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_33 464414 : 468094 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_34 473496 : 474057 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_35 490068 : 493736 3 Pacmanvirus(50.0%) NA NA
DBSCAN-SWA_36 497725 : 500482 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_37 511609 : 512467 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_38 518423 : 519224 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_39 529142 : 531038 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_40 535425 : 536247 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_41 560527 : 561109 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_42 577063 : 578911 1 Feldmannia_irregularis_virus(100.0%) NA NA
DBSCAN-SWA_43 585568 : 587050 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_44 590094 : 591147 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_45 594808 : 595480 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_46 605911 : 608497 1 Loktanella_phage(100.0%) NA NA
DBSCAN-SWA_47 614749 : 615697 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_48 627105 : 628200 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_49 636932 : 637583 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_50 644538 : 648057 1 Choristoneura_murinana_nucleopolyhedrovirus(100.0%) NA NA
DBSCAN-SWA_51 676767 : 677502 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_52 686172 : 687603 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_53 703116 : 704292 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_54 716116 : 720120 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_55 741345 : 750491 6 Leptospira_phage(33.33%) NA NA
DBSCAN-SWA_56 760176 : 761211 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_57 764856 : 765876 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_58 780649 : 784383 3 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_59 807201 : 808290 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_60 850957 : 856928 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_61 863251 : 866335 2 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_62 872503 : 873364 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_63 877801 : 879241 1 Roseobacter_phage(100.0%) NA NA
DBSCAN-SWA_64 908358 : 912822 7 Yellowstone_lake_phycodnavirus(33.33%) NA NA
DBSCAN-SWA_65 920544 : 921555 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_66 933810 : 939370 6 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_67 943143 : 944028 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_68 990822 : 992421 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_69 995449 : 997923 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_70 1001519 : 1003500 2 Micromonas_sp._RCC1109_virus(100.0%) NA NA
DBSCAN-SWA_71 1042796 : 1044503 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_72 1089686 : 1090088 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_73 1109043 : 1110735 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_74 1115002 : 1118368 4 Acanthamoeba_polyphaga_lentillevirus(50.0%) NA NA
DBSCAN-SWA_75 1129420 : 1134212 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_76 1141081 : 1141783 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_77 1165064 : 1166150 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_78 1179631 : 1182163 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_79 1191902 : 1197686 4 Cronobacter_phage(50.0%) plate NA
DBSCAN-SWA_80 1202191 : 1203799 1 Pike_perch_iridovirus(100.0%) NA NA
DBSCAN-SWA_81 1207241 : 1211798 4 Edwardsiella_phage(33.33%) NA NA
DBSCAN-SWA_82 1226469 : 1236236 6 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_83 1246131 : 1246881 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_84 1267162 : 1268107 1 Microcystis_virus(100.0%) NA NA
DBSCAN-SWA_85 1278386 : 1279538 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_86 1284642 : 1285410 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_87 1308112 : 1312778 8 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_88 1340338 : 1340785 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_89 1343837 : 1344728 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_90 1355615 : 1356368 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_91 1366443 : 1367127 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1373889 : 1374981 1 Microcystis_phage(100.0%) NA NA
DBSCAN-SWA_93 1389913 : 1394465 3 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_94 1434518 : 1434950 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_95 1458910 : 1460740 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_96 1470355 : 1471765 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_97 1477280 : 1478273 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_98 1485274 : 1490097 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_99 1497182 : 1500975 3 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_100 1506332 : 1507382 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_101 1521856 : 1522936 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_102 1536749 : 1540611 2 Mycobacterium_phage(50.0%) transposase NA
DBSCAN-SWA_103 1545618 : 1552990 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_104 1573746 : 1574583 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_105 1578980 : 1583275 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_106 1591325 : 1591949 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_107 1595800 : 1597366 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_108 1610404 : 1611577 1 Oenococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1614634 : 1615666 1 Aureococcus_anophage(100.0%) NA NA
DBSCAN-SWA_110 1648538 : 1652872 4 Micromonas_sp._RCC1109_virus(66.67%) NA NA
DBSCAN-SWA_111 1659059 : 1666435 7 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_112 1675227 : 1676106 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_113 1679836 : 1682905 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_114 1691489 : 1695708 2 Microcystis_phage(50.0%) NA NA
DBSCAN-SWA_115 1710309 : 1711488 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_116 1725273 : 1726335 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_117 1729956 : 1731039 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_118 1740909 : 1746725 4 Bordetella_phage(50.0%) NA NA
DBSCAN-SWA_119 1761220 : 1762576 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_120 1767075 : 1767849 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_121 1771351 : 1776129 5 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_122 1787732 : 1791041 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_123 1795927 : 1796818 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_124 1807521 : 1809162 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_125 1814858 : 1816967 1 Salmonella_virus(100.0%) NA NA
DBSCAN-SWA_126 1839801 : 1840818 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_127 1862858 : 1863623 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_128 1869445 : 1870621 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_129 1877492 : 1878392 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_130 1892330 : 1900551 4 Mollivirus(50.0%) NA NA
DBSCAN-SWA_131 1905831 : 1906839 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_132 1921814 : 1927285 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_133 1933696 : 1935289 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_134 1939454 : 1943691 2 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_135 1953570 : 1954254 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_136 1960715 : 1962335 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_137 1981558 : 1982821 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_138 2004366 : 2010645 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_139 2033609 : 2034560 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_140 2039954 : 2040512 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_141 2045218 : 2045881 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_142 2054099 : 2056365 2 Emiliania_huxleyi_virus(50.0%) NA NA
DBSCAN-SWA_143 2108294 : 2110951 2 EBPR_podovirus(50.0%) NA NA
DBSCAN-SWA_144 2119701 : 2121658 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_145 2130154 : 2137457 4 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_146 2168295 : 2169210 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_147 2174241 : 2175792 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_148 2203614 : 2204418 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_149 2208193 : 2208688 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_150 2214145 : 2214856 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_151 2219550 : 2221050 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_152 2226969 : 2230456 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_153 2239828 : 2247656 6 Moraxella_phage(25.0%) tRNA NA
DBSCAN-SWA_154 2250861 : 2253794 3 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_155 2272486 : 2274046 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_156 2320587 : 2322585 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_157 2345261 : 2347175 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_158 2386535 : 2392109 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_159 2402171 : 2409174 8 Moumouvirus(40.0%) NA NA
DBSCAN-SWA_160 2414135 : 2472239 49 Leptospira_phage(28.57%) plate,protease,bacteriocin NA
DBSCAN-SWA_161 2491662 : 2493528 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_162 2499954 : 2501142 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_163 2518711 : 2519641 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_164 2524565 : 2525387 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_165 2537125 : 2539669 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_166 2562348 : 2565582 1 Leptospira_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_014117
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014117_1 2445574-2445674 Orphan NA
1 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 561342 : 570373 7 Chrysochromulina_ericina_virus(16.67%) NA NA
DBSCAN-SWA_2 672663 : 680697 8 Escherichia_phage(42.86%) NA NA
DBSCAN-SWA_3 2674388 : 2686739 11 Methanothermobacter_phage(12.5%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_014120
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 50689 : 83665 19 Stx2-converting_phage(33.33%) integrase,transposase attL 44292:44307|attR 67330:67345
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NC_014119
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 202974 : 271691 52 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_2 1005043 : 1010011 8 Sinorhizobium_phage(33.33%) NA NA
DBSCAN-SWA_3 1014438 : 1044524 42 Haemophilus_phage(26.92%) plate,lysis,holin,capsid,terminase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage