CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010394	Mycobacterium abscessus plasmid, complete sequence	0 crisprs	csa3	0	0	0	0
NC_010397	Mycobacterium abscessus chromosome, complete sequence	0 crisprs	cas3,csa3,DinG,DEDDh,cas4,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1754550 : 1762323

Mycobacterium_phage(44.44%)

integrase

attL 1747003:1747016|attR 1758572:1758585

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1747003:1747016	attL	NA	NA	NA	NA
YP_001702462.1\|1754550_1755801_+\|integrase	Putative phage integrase	G8IR34	Mycobacterium_virus	1.6e-93	47.0
YP_001702463.1\|1755797_1756568_-	Hypothetical protein	NA	NA	NA	NA
YP_001702464.1\|1756974_1757997_-	acyltransferase	A9YX16	Burkholderia_phage	5.7e-25	29.1
YP_001702465.1\|1758215_1758944_+	Bacteriophage protein	A0A068F4L5	Mycobacterium_phage	4.7e-58	50.6
1758572:1758585	attR	NA	NA	NA	NA
YP_001702466.1\|1758924_1759311_-	Bacteriophage protein	A0A1W6JTN0	Mycobacterium_phage	3.9e-35	72.7
YP_001702467.1\|1759477_1759798_+	Hypothetical protein	A0A1W6JTT8	Mycobacterium_phage	2.5e-35	73.8
YP_001702468.1\|1759856_1760663_+	Conserved hypothetical protein (phage protein?)	W6AT80	Mycobacterium_phage	1.0e-93	69.8
YP_001702469.1\|1760662_1760998_+	Hypothetical protein	A0A142K9K4	Gordonia_phage	8.1e-13	41.7
YP_001702470.1\|1760997_1761390_+	Hypothetical protein	A0A142K9K5	Gordonia_phage	1.8e-11	45.0
YP_001702471.1\|1761633_1762323_+	Hypothetical protein	A0A2D1GGB6	Gordonia_phage	1.5e-05	36.7

DBSCAN-SWA_2

1766406 : 1820461

Mycobacterium_phage(82.61%)

integrase,tail

attL 1767447:1767463|attR 1832446:1832462

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_001702483.1\|1766406_1767045_+	Bacteriophage protein	A0A1B0XTM7	Freshwater_phage	9.0e-45	64.3
YP_001702484.1\|1767037_1767463_+	Hypothetical protein	NA	NA	NA	NA
1767447:1767463	attL	NA	NA	NA	NA
YP_001702485.1\|1767462_1767876_+	Hypothetical protein	NA	NA	NA	NA
YP_001702486.1\|1768021_1768282_+	Hypothetical protein	NA	NA	NA	NA
YP_001702487.1\|1768278_1769382_+	hypothetical protein	A0A1B1IP91	uncultured_Mediterranean_phage	1.5e-26	28.8
YP_001702488.1\|1769412_1769667_+	Hypothetical protein	NA	NA	NA	NA
YP_001702489.1\|1769667_1770603_+	Hypothetical protein	A0A023ZWF6	Mycobacterium_phage	6.1e-26	44.6
YP_001702490.1\|1770737_1770887_+	Hypothetical protein	NA	NA	NA	NA
YP_001702491.1\|1771224_1771407_+	Hypothetical protein	NA	NA	NA	NA
YP_001702492.1\|1771539_1771845_+	Hypothetical protein	NA	NA	NA	NA
YP_001702493.1\|1771841_1772138_+	Bacteriophage protein	A0A222ZKN0	Mycobacterium_phage	7.4e-10	45.1
YP_001702494.1\|1772134_1772452_+	Hypothetical protein	A0A1P8DUA9	Mycobacterium_phage	6.3e-07	34.5
YP_001702495.1\|1772756_1773074_+	Putative transcriptional regulator, WhiB family	A0A2P1JRB7	Mycobacterium_phage	3.2e-11	45.5
YP_001702496.1\|1773426_1773858_+	Bacteriophage protein	O34053	Streptococcus_phage	3.1e-17	43.0
YP_001702497.1\|1773872_1774166_+	Hypothetical protein	NA	NA	NA	NA
YP_001702498.1\|1774176_1774503_+	hypothetical protein	A0A142KC74	Gordonia_phage	3.1e-25	56.4
YP_001702499.1\|1774642_1775320_+	hypothetical protein	M4WA13	Mycobacterium_phage	8.8e-67	54.5
YP_001702500.1\|1775316_1775517_+	Hypothetical protein	NA	NA	NA	NA
YP_001702501.1\|1776400_1776733_+	hypothetical protein	NA	NA	NA	NA
YP_001702502.1\|1776729_1776981_+	hypothetical protein	A0A2D1GR59	Pseudomonas_phage	7.1e-14	48.1
YP_001702503.1\|1777252_1777477_+	Hypothetical protein	NA	NA	NA	NA
YP_001702504.1\|1777693_1777990_+	Hypothetical protein	NA	NA	NA	NA
YP_001702505.1\|1778028_1778205_+	Hypothetical protein	NA	NA	NA	NA
YP_001702506.1\|1778352_1778598_+	Hypothetical protein	NA	NA	NA	NA
YP_001702507.1\|1778636_1778873_+	Hypothetical protein	A0A088FBL5	Mycobacterium_phage	2.6e-05	92.3
YP_001702508.1\|1778869_1779145_+	Hypothetical protein	NA	NA	NA	NA
YP_001702509.1\|1779184_1779457_+	Hypothetical protein	NA	NA	NA	NA
YP_001702510.1\|1779495_1779663_+	Hypothetical protein	NA	NA	NA	NA
YP_001702511.1\|1779937_1780219_-	Hypothetical protein	NA	NA	NA	NA
YP_001702512.1\|1780348_1781611_+	Bacteriophage protein	G8I6V8	Mycobacterium_virus	8.4e-71	73.1
YP_001702513.1\|1781617_1782439_+	Bacteriophage protein	A0A2D1GAR3	Mycobacterium_phage	4.8e-83	55.4
YP_001702514.1\|1782447_1783131_+	Bacteriophage protein	A0A0A1ENE4	Mycobacterium_phage	9.2e-88	71.7
YP_001702515.1\|1783130_1783376_+	Hypothetical protein	NA	NA	NA	NA
YP_001702516.1\|1783375_1783792_+	Hypothetical protein	A0A068F2M6	Mycobacterium_phage	6.3e-23	50.4
YP_001702517.1\|1783866_1784235_+	Hypothetical protein	NA	NA	NA	NA
YP_001702518.1\|1784234_1784453_+	Hypothetical protein	NA	NA	NA	NA
YP_001702519.1\|1784449_1784653_+	Hypothetical protein	NA	NA	NA	NA
YP_001702520.1\|1784649_1785282_+	Bacteriophage protein	A0A2P1JRF0	Mycobacterium_phage	5.7e-52	48.5
YP_001702521.1\|1785423_1785708_+	Hypothetical protein	NA	NA	NA	NA
YP_001702522.1\|1786168_1786627_+	Bacteriophage protein	A0A0A0RSN6	Mycobacterium_phage	5.2e-55	70.2
YP_001702523.1\|1786634_1788287_+	Bacteriophage protein	A0A0S1S0L0	Mycobacterium_phage	1.2e-250	74.1
YP_001702524.1\|1788305_1789670_+	Bacteriophage protein	A0A1C9LZY2	Mycobacterium_phage	2.1e-168	66.1
YP_001702525.1\|1789720_1790335_+	Bacteriophage protein	A0A088FVU5	Mycobacterium_phage	1.1e-28	47.6
YP_001702526.1\|1790356_1791187_+	Bacteriophage protein	A0A0A0RSP1	Mycobacterium_phage	7.7e-81	59.8
YP_001702527.1\|1791186_1791759_+	Bacteriophage protein	A0A1C9M013	Mycobacterium_phage	1.1e-41	51.1
YP_001702528.1\|1791755_1792091_+	Bacteriophage protein	G8I4C3	Mycobacterium_phage	2.3e-15	39.3
YP_001702529.1\|1792090_1792357_+	Hypothetical protein	A0A068F3C1	Mycobacterium_phage	1.5e-14	50.0
YP_001702530.1\|1792356_1792734_+	Hypothetical protein	NA	NA	NA	NA
YP_001702531.1\|1792800_1793388_+	Phage associated (putative structural protein)	A0A068F8K4	Mycobacterium_phage	1.6e-69	67.2
YP_001702532.1\|1793482_1793749_+	Hypothetical protein	A0A068F4G7	Mycobacterium_phage	1.3e-13	50.7
YP_001702533.1\|1793865_1794177_+	Hypothetical protein	A0A068F4G7	Mycobacterium_phage	4.0e-14	43.7
YP_001702534.1\|1794187_1798201_+	Bacteriophage tape measure protein (TMP)	A0A068F1L4	Mycobacterium_phage	4.0e-284	58.0
YP_001702535.1\|1798204_1799314_+	Bacteriophage protein	A0A068F3C3	Mycobacterium_phage	1.3e-155	67.9
YP_001702536.1\|1799316_1801113_+	Bacteriophage protein	A0A068F4H3	Mycobacterium_phage	2.4e-236	63.2
YP_001702537.1\|1801127_1801646_+	Bacteriophage protein	A0A068F2D2	Mycobacterium_phage	6.2e-36	49.1
YP_001702538.1\|1801638_1802724_+\|tail	Bacteriophage minor tail subunit	A0A068F8L3	Mycobacterium_phage	1.4e-151	67.8
YP_001702539.1\|1802723_1806848_+	Bacteriophage protein	A0A0K1LLJ4	Mycobacterium_phage	2.0e-153	40.8
YP_001702540.1\|1806859_1807258_+	Bacteriophage protein	A0A0U1UNR7	Pseudomonas_phage	2.8e-28	48.9
YP_001702541.1\|1807260_1808658_+	Bacteriophage protein	G3MDN1	Mycobacterium_phage	1.2e-30	45.3
YP_001702542.1\|1808673_1809105_+	Bacteriophage protein	A0A2P1JR64	Mycobacterium_phage	2.1e-58	80.4
YP_001702543.1\|1809367_1810741_+	Bacteriophage protein	A0A222ZPL1	Mycobacterium_phage	2.3e-122	52.4
YP_001702544.1\|1810737_1811154_+	Hypothetical protein	A0A2D2W368	Mycobacterium_phage	3.5e-05	35.3
YP_001702545.1\|1811204_1812119_+	Bacteriophage protein	A0A2P1CCW0	Mycobacterium_phage	8.0e-55	44.8
YP_001702546.1\|1812167_1812389_+	Bacteriophage protein	NA	NA	NA	NA
YP_001702547.1\|1812385_1813582_+	Bacteriophage protein	S5W0N6	Mycobacterium_phage	1.8e-118	56.7
YP_001702548.1\|1813578_1814226_+	Bacteriophage protein	A0A076YKH2	Mycobacterium_phage	6.6e-19	60.0
YP_001702549.1\|1814228_1814453_+	Hypothetical protein	NA	NA	NA	NA
YP_001702550.1\|1814453_1814774_-	Hypothetical protein	R4TBK1	Mycobacterium_phage	8.5e-12	42.7
YP_001702551.1\|1814954_1815197_+	Bacteriophage protein	A0A222ZL12	Mycobacterium_phage	5.6e-08	41.6
YP_001702552.1\|1815259_1815607_+	Bacteriophage protein	NA	NA	NA	NA
YP_001702553.1\|1815645_1815900_+	Hypothetical protein	NA	NA	NA	NA
YP_001702554.1\|1816244_1817414_-\|integrase	Phage integrase	G9FH48	Rhodococcus_phage	5.8e-74	40.5
YP_001702555.1\|1817437_1817650_-	Hypothetical protein	NA	NA	NA	NA
YP_001702556.1\|1818490_1818877_+	Hypothetical protein	G1D564	Mycobacterium_phage	9.3e-21	42.5
YP_001702557.1\|1819187_1819850_-	Hypothetical protein	NA	NA	NA	NA
YP_001702558.1\|1819846_1820461_-	Putative resolvase	G8I4U3	Mycobacterium_phage	1.5e-65	75.4
1832446:1832462	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2926168 : 2934727

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_001703606.1\|2926168_2926840_-	hypothetical protein	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
YP_001703607.1\|2926953_2927877_+	Probable peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
YP_001703608.1\|2927878_2928748_+	Beta-lactamase precursor (Penicillinase)	A0A1B0VBP7	Salmonella_phage	5.8e-55	45.6
YP_001703609.1\|2928849_2931216_-	Probable GTP pyrophosphokinase	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
YP_001703610.1\|2931246_2931780_-	Probable adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.1e-15	36.4
YP_001703611.1\|2931776_2933453_-	hypothetical protein	NA	NA	NA	NA
YP_001703612.1\|2933452_2934727_-	Probable protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_4

4165630 : 4175122

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_001704833.1\|4165630_4166755_-	acyltransferase	A9YX16	Burkholderia_phage	2.3e-19	28.4
YP_001704834.1\|4166751_4168020_-	Glycosyltransferase GtfA	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
YP_001704835.1\|4168069_4168876_-	Methyltransferase MtfB	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
YP_001704836.1\|4169086_4169779_-	Putative methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.2
YP_001704837.1\|4170011_4171142_-	acyltransferase	A9YX16	Burkholderia_phage	4.1e-16	27.6
YP_001704838.1\|4171309_4172371_-	Putative epimerase/dehydratase	A0A0E3IB24	Synechococcus_phage	4.1e-18	26.1
YP_001704839.1\|4172533_4173856_-	Putative glycosyltransferase GtfA	A0A1L3KK54	Shahe_endorna-like_virus	1.7e-05	39.2
YP_001704840.1\|4174255_4175122_+	Glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	2.8e-89	57.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage