CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_005966	Acinetobacter baylyi ADP1, complete genome	3 crisprs	DEDDh,cas3,csa3,WYL,cas3f,cas8f,cas5f,cas7f,cas6f,cas1	0	48	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_005966_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005966_1

2339338-2339725

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	CRT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	PILER-CR

6 spacers

The CRISPR arrays of NC_005966_1

>merge|NC_005966|1|2339338-2339725|CRISPRCasFinder,CRT,PILER-CR
TAGTTAAGCTGCCTGTGCGGCAGTTAAGTGGATGCGATTTATAAGCTTCAAGAAGCAAGATTTCTAAGCTGCCTGTGCGGCAGTTAAGCAGAAACGGCGGGTACACGTGTCACGGTGAATTTTCTAAGCTGCCTGTGCGGCAGTTAAGATCGCTATTCTGACCCAGAAATTAACAATCACTTTCTAAGCTGCCTGTGCGGCAGTTAAGTCATGATACGTGCAGTACCATCTGCTGGATTATTTCTAAGCTGCCTGTGCGGTAGTTAAGACTTAATGCGGAACCGACATCTGTACTAGTGATTTCTAAGCTGCCTGTGCGGCAGTTAAGTATTGAGCAAGCGATTGACGGTTATGCGCGTTTTTCTAAGCTGCCTGTGCGGCAGTTAAG

>NC_005966|1|1|2339338-2339725|CRISPRCasFinder
TAGTTAAGCTGCCTGTGCGGCAGTTAAG	TGGATGCGATTTATAAGCTTCAAGAAGCAAGA
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	CAGAAACGGCGGGTACACGTGTCACGGTGAAT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	ATCGCTATTCTGACCCAGAAATTAACAATCAC
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TCATGATACGTGCAGTACCATCTGCTGGATTA
TTTCTAAGCTGCCTGTGCGGTAGTTAAG	ACTTAATGCGGAACCGACATCTGTACTAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TATTGAGCAAGCGATTGACGGTTATGCGCGTT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG

>NC_005966|1|1|2339338-2339725|CRT
TAGTTAAGCTGCCTGTGCGGCAGTTAAG	TGGATGCGATTTATAAGCTTCAAGAAGCAAGA
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	CAGAAACGGCGGGTACACGTGTCACGGTGAAT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	ATCGCTATTCTGACCCAGAAATTAACAATCAC
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TCATGATACGTGCAGTACCATCTGCTGGATTA
TTTCTAAGCTGCCTGTGCGGTAGTTAAG	ACTTAATGCGGAACCGACATCTGTACTAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TATTGAGCAAGCGATTGACGGTTATGCGCGTT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG

>NC_005966|1|1|2339398-2339725|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	CAGAAACGGCGGGTACACGTGTCACGGTGAAT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	ATCGCTATTCTGACCCAGAAATTAACAATCAC
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TCATGATACGTGCAGTACCATCTGCTGGATTA
TTTCTAAGCTGCCTGTGCGGTAGTTAAG	ACTTAATGCGGAACCGACATCTGTACTAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTTAAG	TATTGAGCAAGCGATTGACGGTTATGCGCGTT
TTTCTAAGCTGCCTGTGCGGCAGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_005966.1\|WP_004928229.1\|2337707_2338037_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NC_005966.1\|WP_004928216.1\|2331034_2332375_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|236758
NC_005966.1\|WP_004928254.1\|2348335_2348683_-\|hypothetical-protein	unknown	unknown	unknown
NC_005966.1\|WP_004928242.1\|2343373_2344321_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239117
NC_005966.1\|WP_004928250.1\|2347216_2348200_-\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NC_005966.1\|WP_004928234.1\|2338566_2339274_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NC_005966.1\|WP_004928221.1\|2333167_2334112_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_005966.1\|WP_004928240.1\|2342093_2343305_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_005966.1\|WP_004928248.1\|2345374_2346625_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NC_005966.1\|WP_004928245.1\|2344398_2345250_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NC_005966.1\|WP_011182497.1\|2328575_2331035_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NC_005966.1\|WP_004928236.1\|2339964_2340420_+\|DUF441-domain-containing-protein	unknown	unknown	gnl\|CDD\|377279
NC_005966.1\|WP_004928223.1\|2334118_2336080_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_005966.1\|WP_004928218.1\|2332552_2333077_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NC_005966.1\|WP_004928231.1\|2338130_2338574_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_005966.1\|WP_004928260.1\|2350021_2350354_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_005966.1\|WP_004928225.1\|2336081_2336549_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NC_005966.1\|WP_004928238.1\|2340639_2341560_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176132
NC_005966.1\|WP_004928227.1\|2336683_2337598_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NC_005966.1\|WP_004928257.1\|2348943_2349882_+\|ribokinase	unknown	unknown	gnl\|CDD\|236858

Protein	Function_ID	Function_description	E-value
NC_005966.1\|WP_004928229.1\|2337707_2338037_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.09975e-12
NC_005966.1\|WP_004928216.1\|2331034_2332375_+\|peptidylprolyl-isomerase	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	1.1694e-58
NC_005966.1\|WP_004928242.1\|2343373_2344321_-\|nucleoside-hydrolase	gnl\|CDD\|239117	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine and cytidine, E. coli RihB prefers cytidine over uridine. S. cerevisiae URH1 prefers uridine over cytidine. .	4.13465e-160
NC_005966.1\|WP_004928250.1\|2347216_2348200_-\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	6.95333e-25
NC_005966.1\|WP_004928234.1\|2338566_2339274_-\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	1.70673e-86
NC_005966.1\|WP_004928221.1\|2333167_2334112_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.53448e-138
NC_005966.1\|WP_004928240.1\|2342093_2343305_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.03057e-88
NC_005966.1\|WP_004928248.1\|2345374_2346625_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.92315e-158
NC_005966.1\|WP_004928245.1\|2344398_2345250_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	3.47424e-35
NC_005966.1\|WP_011182497.1\|2328575_2331035_+\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	2.66181e-109
NC_005966.1\|WP_004928236.1\|2339964_2340420_+\|DUF441-domain-containing-protein	gnl\|CDD\|377279	pfam04284, DUF441, Protein of unknown function (DUF441). Predicted to be an integral membrane protein.	1.82178e-48
NC_005966.1\|WP_004928223.1\|2334118_2336080_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_005966.1\|WP_004928218.1\|2332552_2333077_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	2.53395e-47
NC_005966.1\|WP_004928231.1\|2338130_2338574_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.78947e-14
NC_005966.1\|WP_004928260.1\|2350021_2350354_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.45676e-14
NC_005966.1\|WP_004928225.1\|2336081_2336549_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	4.12601e-54
NC_005966.1\|WP_004928238.1\|2340639_2341560_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.33476e-107
NC_005966.1\|WP_004928227.1\|2336683_2337598_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	2.45282e-144
NC_005966.1\|WP_004928257.1\|2348943_2349882_+\|ribokinase	gnl\|CDD\|236858	PRK11142, PRK11142, ribokinase; Provisional.	0

>NC_005966.1|WP_004928234.1|2338566_2339274_-|pseudouridine-synthase
MLLEKMLQSQGFGSRKYCQQLIKNGAVSIQDEIQKDLKYRIHDLTDFNFQVFDQNYVYREKVYIILNKPKGFECSHQPHHHQSVFSLLPDLLIQRNIAAVGRLDQDTTGLLLLTDDGQYLHTLTHPKKHVPKVYHVATIDPITVDQMHQLEQGVELHNEKGVFAATNVTLLNETQLSMTIHQGVYHQVKRMIAAVGNKVTALHRHKIGQLELPNLAEGEWMYLTETQKLAAQQIT
>NC_005966.1|WP_004928231.1|2338130_2338574_+|GNAT-family-N-acetyltransferase
MIVRRATVEDLNQLAVLFDEYRQFYGASSNLKQSYDFLKQRFENKESVIFIHVKDDVFTGFVLLYLGFSSVACSTYYILDDVYVTPVYRRQGSAIQLIDTAILFARHENALRISLETQKNNIESMRLYQKMGFVLDEEFQTYHCFLK
>NC_005966.1|WP_004928229.1|2337707_2338037_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MRKTEVYQVRLDSQEKKQAFAVFKQLGITPAQAVRLFFKQVVLTKSIPFAIENQNIDMEQLLKLRKIRAQTPVNTQHEALIEDTEFNMDDHEALFDELNALLGESDKAQ
>NC_005966.1|WP_004928227.1|2336683_2337598_+|RluA-family-pseudouridine-synthase
MITSTDFTPPMLHGVSASKAFLPLQPKEIFKSVFEFLCRHFPHISASEWQQRFNDGLVFDAQGHLLDLNSPYQANTHIFYYRFLAHEIHVPFEHSILFENHDLLVVDKPHFLTISPTGKYVQETLLVRLKQQTGNEDLTPIHRLDRETAGVVLFCKRPESRGIYQTLFAKREVHKIYHAIAAYNPLITFPQTLRLCLEKGNPFYTMQVNPNGQVNSETRIECLAHNQQWAKYRLSPSTGKQHQLRLHLSFLNIPIKNDPFYPVVEHKADDDFSAPLQLLAKELSFFDPITQSPLNFKSHYELNL
>NC_005966.1|WP_004928225.1|2336081_2336549_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MQYSFRLTLNDEQDTQNLAKTLSKCFTEGVIYLIGDLGAGKTTFTRYLLQALGHQGAVKSPTYTLVEPYKIKQKDIFHFDLYRLNDPYELELMGIRDYLDVPNALFLFEWPSKGGDDIPDANIVIQIEKSEDDVQRFITFSLENAALYECLKEKL
>NC_005966.1|WP_004928223.1|2334118_2336080_-|DNA-mismatch-repair-endonuclease-MutL
MHNDAVQIHRIHTLDPALANQIAAGEVIERPASVVKELLENAIDAGATELIIRVAQGGSTLIEIIDNGLGIHPDDLPLAVMRHATSKIKTPEDLHAIVSLGFRGEALASIAAVSRLSLMSSQTDDGVGYQVEVNGTAFDHQEIQAIALRKGTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLALTHFEIRFVLEHNDQIKLNLPIADSGVLRFQRVQQLLGQQFTQNAYWLDTESISMRLSGWLGHPSDARSQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQYSAYLLFLEVDPDQVDVNVHPTKHEIRFLNQREVHEFVRHHAKETLAQFQTASADLAQAMKSNEPKDILRDQPKHQEQFSLHRTDATENPVVNRAEDTQIEYRKELSTDLLTEFNASRPKTVEYSTRMPVRDPVQLNNALKTYLAPLREESGSAITASSDVVSGVDEFPLGVAIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMKAAWDKPEFWISQQLLIPKIISITRMQASRIEDLKSQLLRLGLDIDQYGDEQAIVRGVPAILQKANFEKLIPELLHDLDPNDEAQALLQKRDTILAGMACHGAVRAHRMLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFARGE
>NC_005966.1|WP_004928221.1|2333167_2334112_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSSTLPVINLMGPTASGKTALACELYERGHFELISVDSALIYKDMDIGTAKPTKEELALYPHHLIDIITPLEVYSAAQFVEDATQLIDQIHMKGKTPILVGGTMLYFKSLLEGLSTNLPSADAEVRAAIEKQAEQEGWQSVYDELARVDPVAGARFKVSDRQRIIRAIEVYRLTGQPITKLQAEQPKNVPYRYTFHNYALLPDRIELHKRIEQRLFKMWSIGFLNEVESLIKKYDLNDNLPSMRSVGYRQALDFLLKSDMSHNNRREMEDKALFATRQLAKRQYTWLRSLQETHYFKTYLTIKQAQEDLRNSYG
>NC_005966.1|WP_004928218.1|2332552_2333077_-|RNA-chaperone-Hfq
MSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAPTGAPQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGGQGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDNDTKFEDGQEDDSNNR
>NC_005966.1|WP_004928216.1|2331034_2332375_+|peptidylprolyl-isomerase
MKTKYLKQFFKTTALALVVSSSMQSFAAPTDEVVAIVDNSVILKSDLEQGVAEAQHQLEAQKKTVPPLNYLQLQVLDQLILRQAQLEQVKRYGIKPDENTLNDAVLKVASQSGIKSLSAFQQKLDAIAPGTYASLRNRIGEDLAINRLRQQQVMSRIKISDQDVANFLKSPQGQAMLGSQVHVIHARISAQSDVDPQQLQSVAQQVKQALNESNDITAISKKFSTKDIKVEGADMGYRDLAELPSELAARVSPLQAGQTTDLINVRDGIHVLKLIERKNSEQKAIVTQYQTRHILIQPSEVMSAEMAKQTIDSIYNRLKAGEDFTTLAATYSADTGSARDGGSLGWVTPGSMVPEFESKMKNTPVGQISEPFQTQFGWHILQVTATREKDMTHEYQERMARQVLGERQFDSELDSWLREVRAHAFVQIKEPQLDSKAQQNATPTTP
>NC_005966.1|WP_011182497.1|2328575_2331035_+|LPS-assembly-protein-LptD
MRQMKYQFKFNPLAAAIFTLLCGGSMQSSYADANDSASSVDNKKLKESIQKAYPGQEFFEQYYVEKSSPEAQVRDTRSLSSAFCTGTWITPISPTTQAVPADQATSVVTADYAHYNPNGDSELEGNVLIDQQGRSIRANKVTIDRTQTYANAEGNVQLAQAGLLAQSDQINYNLKTQQGDLKNSFYISEQQHAHGHAEQIQRTSPTEIILRNATYTTCPPEQKPTWRLEAKEIKLNQDTGRGTTKNTKLYVKDVPILAVPYFNFPIDNRRTTGILNPNIGFSNDGGLELTVPVYLNLAPNYDATLTPRYISDRGVMLQSEFRYLTENFGQGKIWGGYLPDDKKYNNEDRKDFNLLHKWKINDYWSTDVEYHYASDKDYVTDLDTNPDSKTDLNLRRAWTLKYKNQIPGLTAQLKVEDFQTLDKTVSDVDKPYARLPQFLLNYVTGNPLGLQYEFNNDTAYFKKNIDDAANYSTQPSGTRIYNQFATRYNFRTPWAFAIPEVSIRSINTFYDQNTVENLGLNSDNKSKSVVVPQFSLDTGLIFQRDGDYLQTITPRAFYAYAPYKNQTGYPNFDTTSASINYDQLFSPYRFYGHDRLEDNNFLSLGVSYSLFDPQGLERLRAGVGQSFYFADRRVTLNNTDDTIDTSKNSGPIVSISSQLTNKFTVAANSAWMSNGDNAQHDFQTYYTGDHGNLYNLGYFNRKNIPDRQLAYDAAVASFVQPIMNNWRIMGHVQFDFRNNVAREYLLGVNYESCCYAISVYGRSYYNDLDDPKDPNVNVKRAVMAEITFKGLGGLNNKLASLLENRVLGFKEINQSWTQR
>NC_005966.1|WP_004928236.1|2339964_2340420_+|DUF441-domain-containing-protein
MLMSQFDVNLLVLLVLLACGIFSQNAAVTIAAGVLIVFKLTPLSEFFPFLQQHGLNVGVIILTIGVLTPIASGKLSGETILKSFFSYKSILAITVGLLVAWLGGRGVKLMSSQPDIVAGLLIGTVAGVALLRGVPVGPLIAAGILSLVLWN
>NC_005966.1|WP_004928238.1|2340639_2341560_-|LysR-family-transcriptional-regulator
MLEIRHLKTLLALREHGSLVAAANDLCLTPSAISHQLKELDHWYGVEVVNRRSRPVTFSNVGQRLLKLADDILPQIQIAQSDITRIVHGQTGRIVFSSECHSCFDWLMPLLNQYRQQYPDVDLDFASGFEANPHDLLQTGEFDLLITADPIALKGIEYFPIFEYESRLVLSNTHPLVRAEKVTVEELAEQTLITYPVDKHRLDIMAHLFIPANIQPKEIRTTDLTQMLIQLVASGRGISALPDWVVNEYEQKGWVTSRRLDCVSANGLRRTLYAGYRIEEKEKSYFEGFLKQLAKFSQKRAHYYAN
>NC_005966.1|WP_004928240.1|2342093_2343305_+|MFS-transporter
MSSSSNTSVPPIRQYPLFLIILALATGGFCIGTTEFVAMGLIQEIAADLHISVPQAGHFISAYALGVVIGAPVIAILGARVPRKSLLLGLMLFYGVANALTALAKTPEMVLISRFIAGFPHGAYFGVAALVAAELAGPKKRASAVAQVMMGLTVATVLGVPLATWIGQQFGWRAGFEFSAAIAFITLISVAIFVPHIAVRTTASIKTELAGLKNINMWLTLAVGAIGFGGMFSVYSYVSPILTEYTKVNIDIVPIALAIWGIGMVIGGLVAGWLADKNLNRTLVGVLISSALAFILASFLMSNIYTAIAGLFLIGITVMGLGGGLQMRLMDVAGDAQGVAASLNHSAFNIANALGAFLGGWVLSHQMGWIAPIWVGFVLSLGGLIILLIAFAVEKKTSSNQCA
>NC_005966.1|WP_004928242.1|2343373_2344321_-|nucleoside-hydrolase
MTHSPHQIIIDTDPGQDDAVAILLALASPEVKVLAITTVAGNVPLALTSANARKVCELAGRPDISVFAGCDRPLKRPLITAENVHGKTGLDGIELPEPQMPLQAQHSVDFIIETLRNAPEKTITICSLGPMTNTAQALLKAPDIAARVKRIVLMGGGFFEGGNITPSAEFNMFVDPDAAKIVFAAGIPLTVIPLDVTHQVLTSKEWVDGLRRMDNQVGPAVAAWTDFFERYDMEKYGSEGAPLHDPCVIGYMIKPELFSGRFINVEIEADSPLTVGAMVADWWNVTGRTANAEYLRDIDRDGFFDLLSERLATYQ
>NC_005966.1|WP_004928245.1|2344398_2345250_-|isopenicillin-N-synthase-family-oxygenase
MHIATIDYSASNAGQLFAQSLHDTGFAVIVNHPLDWPLIQLIYTEWLAFFKSDAKNQYRVRPEQKGGFFPTDLSETAKGETVKDLKEFFHIFPSGVFPHELSTNTHHYYEQALILAKQLLQWIQDFSPSNVQNAYHEPLPAMIEGSESLLRVLRYTPVDVDHDYIRAAAHEDINLITILPAATAPGLQVKDATGEWYDVPVEPNSLIINIGDMLQEASQFYYPSTTHRVVKYKDQDRLQERISMPFFLQPRGDVVLSARYTAGSYHAERMRELKVIQDGKILL
>NC_005966.1|WP_004928248.1|2345374_2346625_-|NupC/NupG-family-nucleoside-CNT-transporter
MFEYRGLIGIFILLLIGYIFSNNRRIIKVRTILPALGLQFLLGIIILYVPMGKYLFEQLASGVNHVIGYADAGSAFLFGALVGDQMNTVFHGGGFIFALKVLPTIIFVTALIAILYYLKIMTIFIKVLGGIFQKALGISKVESFAAVTTIFIGQNELPAALRPFLLRMNKNELFTVMCSGMAAVSGSVLVGYAGLGVPMEYLLAASLMAIPGGILFARLLSPATEPSTVEVTDLEFGEQRPSNIIEAAANGAMMGLKIAAGVGTVIMVFVGLLSLVNGIFGFVGGWFGYSGLSLDAIFGYILSPLAYVMGVDWNEAQLAGALLGQKLVINEFVAYLSLSPHLADHTISAHTAAIISFGLCGFANFSSIGVVLGAFGMVEPKLTPVLSKLAVRALLAATLSNLMSATIAGICLGFSM
>NC_005966.1|WP_004928250.1|2347216_2348200_-|ion-transporter
MTESASLTLRRRVYNHLHNPNYESRLSQFINYLLVLLIVANVLAVLLESIDSIYSQYQLYFDGFEKISIVIFTVEYILRIWCVAEEYPQLAAWKARLKWVSSGGAIIDLLAILPAYLNFFVHIDLRFLRILRLLRLLKLTRYFVSLQILLAVIEREKGSFQAVVFILMIMIVMAAGGIYVVENKAQPEVFSSIPQSMWWAVVTLTTVGYGDVTPVTNIGRLLGAVITILGVGLAALPAGILATGLANELNLRNQRLEQEFRELLISNQIDYLNQEKEIERIRKKVGLSREQTHEIILQLIKEQQLDEQEQRKKYKYCPHCGEKLPDA
>NC_005966.1|WP_004928254.1|2348335_2348683_-|hypothetical-protein
MNLHYTHKPNYYFYAHKLVLFLENHVKKHPSDVQETFNLNTIYDLFDHDFASSSTNLEGILNIVDEYVIETETGREALVAQYRISLDNHILTLSFNPNAVTRLIQGQTITYPKAA
>NC_005966.1|WP_004928257.1|2348943_2349882_+|ribokinase
MSSTPPLLTVIGSINVDHILGLEHFPHPGQTLNGQSYQVAFGGKGANQAVAAGRSGANTSFIACVGSDAVGEQIRHQLIKDNIDTQAVRAVEGFTTGVALIFVNQHAENFIGIHAGANAALDIAYIDQHAELIQRSSAILLQLETPLATILHAAKLAKAAGVKVILNPAPACELPEELLRLVDIITPNETEALSLTNVIVHDDHDAAEAANVLHQKGIKTVVITMGSRGVWLSEYGQGKMIEGFKVSAIDTIAAGDTFNGAFVTALLEGKTAQDAARFANAAAAIAVTRSGAQPSVPWRQEIDLFLSAQTAL
>NC_005966.1|WP_004928260.1|2350021_2350354_-|helix-turn-helix-transcriptional-regulator
MDIGRAVRFLRKRQGWTQQQLADFSHTSKSNISNLENGNQGYSPAILEYLAKAFNCSVSQIFLLAENMDNEGNLLKDWQHMPIDVLFIQLPQEVQCQLKHLIFTLIDTKK

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Crispr_ID: NC_005966_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005966_2

2371799-2373085

Orphan

I-F

Consensus_repeat	Method
CTTCACTACCGCACAGGTAGCTTAGAAA	CRISPRCasFinder
CTTCACTACCGCACAGGTAGCTTAGAAA	CRT

21 spacers

The CRISPR arrays of NC_005966_2

>merge|NC_005966|2|2371799-2373085|CRISPRCasFinder,CRT
CTTCACTACCGCACAGGTAGCTTAGAAATCACACTGCACTTGCGATTGGGGCACTATCAACTTCACTACCGCACAGGTAGCTTAGAAAAATGTCGTGAACACTCAGACAGGCGGATACCACTTCACTACCGCACAGGTAGCTTAGAAACGACAGAGCAAGACATCACTGATATGTCGAATTCTTCACTACCGCACAGGTAGCTTAGAAAGCAGTCGGACAACTTCAATCGAACGCATCATCCTTCACTACCGCACAGGTAGCTTAGAAACTGCTTCTCGGTCATCCTTAAATCTGAATGAGCTTCACTACCGCACAGGTAGCTTAGAAATCACACTGCACTTGCGATTGGGGCACTATCAACTTCACTACCGCACAGGTAGCTTAGAAAAATGTCGTGAACACTCAGACAGGCGGATACCACTTCACTACCGCACAGGTAGCTTAGAAACGACAGAGCAAGACATCACTGATATGTCGAATTCTTCACTACCGCACAGGTAGCTTAGAAAGCAGTCGGACAACTTCAATCGAACGCATCATCCTTCACTACCGCACAGGTAGCTTAGAAACTGCTTCTCGGTCATCCTTAAATCTGAATGAGCTTCACTACCGCACAGGTAGCTTAGAAATTCCACCAATCAAGAGTGGATTGGTCAATAGTCTTCACTACCGCACAGGTAGCTTAGAAAAGTCGACCGCGAGACGGGAAAAAGTACGAACACTTCACTACCGCACAGGTAGCTTAGAAACGTAGACTGCCACCACCGCACCCCCATACATTCTTCACTACCGCACAGGTAGCTTAGAAATCGCGCAATCCATCGCGAGGGGCCTATTCGAGCTTCACTACCGCACAGGTAGCTTAGAAAAATGAGAAAATCAAACCACCCATGATGATCGTCTTCACTACCGCACAGGTAGCTTAGAAATACTCGAACTTGTCTGTCATATTGCCCTTACCACTACCGCACAGGTAGCTTAGAAATGAATACTCAAATGACAATAAACAGGATAAAGCTTCACTACCGCACAGGTAGCTTAGAAATGTGAACAAATCCGTTGTAAGCCGCGCCTTATCTTCACTACCGCACAGGTAGCTTAGAAAATTTAAAAGCCACTCATCTGACACACCTAAAACTTCACTACCGCACAGGTAGCTTAGAAATTATCGAAGTATTCTGCTTTGGGTGCGGCAATGCTTCACTACCGCACAGGTAGCTTAGAAAACCAGAAATGATTCCAGATATTCCAGATGAATCCTCACTATCGCACAGGTAGCTTGATCA

>NC_005966|2|2|2371799-2373085|CRISPRCasFinder
CTTCACTACCGCACAGGTAGCTTAGAAA	TCACACTGCACTTGCGATTGGGGCACTATCAA
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGTCGTGAACACTCAGACAGGCGGATACCA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGACAGAGCAAGACATCACTGATATGTCGAATT
CTTCACTACCGCACAGGTAGCTTAGAAA	GCAGTCGGACAACTTCAATCGAACGCATCATC
CTTCACTACCGCACAGGTAGCTTAGAAA	CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TCACACTGCACTTGCGATTGGGGCACTATCAA
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGTCGTGAACACTCAGACAGGCGGATACCA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGACAGAGCAAGACATCACTGATATGTCGAATT
CTTCACTACCGCACAGGTAGCTTAGAAA	GCAGTCGGACAACTTCAATCGAACGCATCATC
CTTCACTACCGCACAGGTAGCTTAGAAA	CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TTCCACCAATCAAGAGTGGATTGGTCAATAGT
CTTCACTACCGCACAGGTAGCTTAGAAA	AGTCGACCGCGAGACGGGAAAAAGTACGAACA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGTAGACTGCCACCACCGCACCCCCATACATT
CTTCACTACCGCACAGGTAGCTTAGAAA	TCGCGCAATCCATCGCGAGGGGCCTATTCGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGAGAAAATCAAACCACCCATGATGATCGT
CTTCACTACCGCACAGGTAGCTTAGAAA	TACTCGAACTTGTCTGTCATATTGCCCT
TACCACTACCGCACAGGTAGCTTAGAAA	TGAATACTCAAATGACAATAAACAGGATAAAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT
CTTCACTACCGCACAGGTAGCTTAGAAA	ATTTAAAAGCCACTCATCTGACACACCTAAAA
CTTCACTACCGCACAGGTAGCTTAGAAA	TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG
CTTCACTACCGCACAGGTAGCTTAGAAA	ACCAGAAATGATTCCAGATATTCCAGATGAAT
CCTCACTATCGCACAGGTAGCTTGATCA

>NC_005966|2|2|2371799-2373085|CRT
CTTCACTACCGCACAGGTAGCTTAGAAA	TCACACTGCACTTGCGATTGGGGCACTATCAA
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGTCGTGAACACTCAGACAGGCGGATACCA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGACAGAGCAAGACATCACTGATATGTCGAATT
CTTCACTACCGCACAGGTAGCTTAGAAA	GCAGTCGGACAACTTCAATCGAACGCATCATC
CTTCACTACCGCACAGGTAGCTTAGAAA	CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TCACACTGCACTTGCGATTGGGGCACTATCAA
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGTCGTGAACACTCAGACAGGCGGATACCA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGACAGAGCAAGACATCACTGATATGTCGAATT
CTTCACTACCGCACAGGTAGCTTAGAAA	GCAGTCGGACAACTTCAATCGAACGCATCATC
CTTCACTACCGCACAGGTAGCTTAGAAA	CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TTCCACCAATCAAGAGTGGATTGGTCAATAGT
CTTCACTACCGCACAGGTAGCTTAGAAA	AGTCGACCGCGAGACGGGAAAAAGTACGAACA
CTTCACTACCGCACAGGTAGCTTAGAAA	CGTAGACTGCCACCACCGCACCCCCATACATT
CTTCACTACCGCACAGGTAGCTTAGAAA	TCGCGCAATCCATCGCGAGGGGCCTATTCGAG
CTTCACTACCGCACAGGTAGCTTAGAAA	AATGAGAAAATCAAACCACCCATGATGATCGT
CTTCACTACCGCACAGGTAGCTTAGAAA	TACTCGAACTTGTCTGTCATATTGCCCT
TACCACTACCGCACAGGTAGCTTAGAAA	TGAATACTCAAATGACAATAAACAGGATAAAG
CTTCACTACCGCACAGGTAGCTTAGAAA	TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT
CTTCACTACCGCACAGGTAGCTTAGAAA	ATTTAAAAGCCACTCATCTGACACACCTAAAA
CTTCACTACCGCACAGGTAGCTTAGAAA	TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG
CTTCACTACCGCACAGGTAGCTTAGAAA	ACCAGAAATGATTCCAGATATTCCAGATGAAT
CCTCACTATCGCACAGGTAGCTTGATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_005966.1\|WP_011182510.1\|2367825_2368320_-\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NC_005966.1\|WP_004928330.1\|2381236_2382061_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_005966.1\|WP_004928315.1\|2370754_2371567_-\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NC_005966.1\|WP_004928345.1\|2386959_2387796_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|235419
NC_005966.1\|WP_004928334.1\|2382060_2383149_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NC_005966.1\|WP_004928310.1\|2368618_2369080_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|376515
NC_005966.1\|WP_004928302.1\|2365817_2367140_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NC_005966.1\|WP_004928313.1\|2369435_2370734_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_005966.1\|WP_026056828.1\|2384223_2385228_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NC_005966.1\|WP_004928319.1\|2373208_2375191_+\|hypothetical-protein	unknown	unknown	unknown
NC_005966.1\|WP_004928322.1\|2375300_2377001_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212677
NC_005966.1\|WP_004928324.1\|2377176_2379747_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	unknown	unknown	gnl\|CDD\|225451
NC_005966.1\|WP_004928336.1\|2383618_2384068_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	unknown
NC_005966.1\|WP_004928342.1\|2385309_2386749_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_005966.1\|WP_004928327.1\|2380000_2380771_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|187629
NC_005966.1\|WP_004928305.1\|2367144_2367780_+\|2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone-monooxygenase	unknown	unknown	gnl\|CDD\|153101
NC_005966.1\|WP_004928298.1\|2362956_2365650_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_005966.1\|WP_004928294.1\|2358432_2362932_-\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NC_005966.1\|WP_004928311.1\|2369036_2369417_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_005966.1\|WP_004928292.1\|2358140_2358353_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|238219

Protein	Function_ID	Function_description	E-value
NC_005966.1\|WP_011182510.1\|2367825_2368320_-\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	8.52507e-25
NC_005966.1\|WP_004928330.1\|2381236_2382061_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	7.65825e-123
NC_005966.1\|WP_004928315.1\|2370754_2371567_-\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	6.76261e-97
NC_005966.1\|WP_004928345.1\|2386959_2387796_-\|kinase/pyrophosphorylase	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	4.24914e-129
NC_005966.1\|WP_004928334.1\|2382060_2383149_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NC_005966.1\|WP_004928310.1\|2368618_2369080_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|376515	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).	2.47584e-09
NC_005966.1\|WP_004928302.1\|2365817_2367140_+\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	3.97541e-140
NC_005966.1\|WP_004928313.1\|2369435_2370734_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	7.12737e-95
NC_005966.1\|WP_026056828.1\|2384223_2385228_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	2.48494e-178
NC_005966.1\|WP_004928322.1\|2375300_2377001_-\|Hsp70-family-protein	gnl\|CDD\|212677	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins. This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF.	0
NC_005966.1\|WP_004928324.1\|2377176_2379747_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	2.61625e-174
NC_005966.1\|WP_004928342.1\|2385309_2386749_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.39057e-77
NC_005966.1\|WP_004928327.1\|2380000_2380771_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.61245e-122
NC_005966.1\|WP_004928305.1\|2367144_2367780_+\|2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone-monooxygenase	gnl\|CDD\|153101	cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.	2.04743e-72
NC_005966.1\|WP_004928298.1\|2362956_2365650_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	4.17332e-60
NC_005966.1\|WP_004928294.1\|2358432_2362932_-\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	5.59667e-117
NC_005966.1\|WP_004928311.1\|2369036_2369417_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.6577e-33
NC_005966.1\|WP_004928292.1\|2358140_2358353_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	3.80367e-15

>NC_005966.1|WP_004928315.1|2370754_2371567_-|HesA/MoeB/ThiF-family-protein
MNDQDNLDLELNDAEMHLYSRQILLDGWDVDAQEKLKFANVLIVGAGGIGCTSAELLARAGVGKITLIDSDTIEISNLQRQIAFTPNDLGCFKAEVLAKRLTQLNPHIVVEYIVNKLVSENVDELIQHQDLILDGCDNFTTRYLVNASCKKNQIPLISASAIGFQGQLFMIDSDSACYECLFPKDQFENEGMRCAESGVLATTPVVMASLQAHHALLYLGLDRSPLREKLLLWDGMSMKQRILHFEKDTNCSTCQASLSVNSVKFDTLPQ
>NC_005966.1|WP_004928313.1|2369435_2370734_-|AarF/ABC1/UbiB-kinase-family-protein
MKKNILFDGLRSVARIGETAFVAARAGIKYATEKPSNAKLMRETFESLGSTYIKLGQFIASTPSLFPREYVEEFQGCLDQTPTLPFSYIQEVLAEEFEGRDLNQIFASIDETPLASASIAQVHAARLTTGEDVVIKVQKPGVETILYTDLNVVHWATKMLEKAIPKVKFASLSEIVEEIKIRMVREVDFIEEAQNLDDFVEYLKITNNQAATAPKVYHQFSTRRILTMERLYGVSLTDFDIVKKFAKDPSQVLITAMNTWFGSLMLCKSFHADLHAGNLMLLEDGRIGFIDFGIVGQLNPQVWTACLAFMDALQKTDYTAMAENMLKMGMTKTQIDTQVLAQDLERLFSGVLLADPQEILASKPSDLNDIMLDMVAVGERHGIKFPRDFALLFKQMLYFDRFMRVLAPYTDIYADQRLKMVQTIEPQSLLKH
>NC_005966.1|WP_004928311.1|2369036_2369417_-|dihydroneopterin-aldolase
MDAIVIEGLKVNTVVGCFNWERQITQPLLLDLTIHNDLQKAACSDELEDTLNYAQICELAAQSIQTVQPKLIEHAAHLVLKILFETFPTIESIIITIRKPAIIAEAHSVGIRLERQRHNFCTRTFE
>NC_005966.1|WP_004928310.1|2368618_2369080_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNANATIFALALSSNLNQKQHFEMAYRQIQSWGDVQFSNVYKIPCRDGVGEDYWNSACLLVSDLSAQEIELHLKQLEALSGRVRPSHQISLDVDLIAWGSTLDQMQFNPKKLPLAVDVKIPLYELWPNTDLEVKYLNYPKIDFNVNLQVISSS
>NC_005966.1|WP_011182510.1|2367825_2368320_-|DUF2799-domain-containing-protein
MSLEQCKTANWLVVGEKDGSDGRERRLDQYLKACSKGNIVPDQVLYEQGYQKGQRYYCQPDNIFYEALKGNGNYQVCPVENRAVLRPYYQVAHNYYNAENEYQRYQDNFKEYARKAYDDKLKQEERDRYLKLFKDLQNNSDRMNRNYRDAIRVLEKFKYEHGLK
>NC_005966.1|WP_004928305.1|2367144_2367780_+|2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone-monooxygenase
MRHYTGIDRLINSFDQALRSLVPGTTAAQRSNPAEQTQAPLTVSDARHVAGLMRVNHSGEVCAQALYHGQALTAKLPNVRLEMEQAAIEEQDHLAWCEDRLKELDSVPSLLNPVWYSLSFGMGAIAGIAGDKYSLGFVAETERQVSSHLQDHLKQLPTHDERSKRILEQMNQDELHHRDTALNAGGVELPVAVKITMTAISKLMTKTSYYI
>NC_005966.1|WP_004928302.1|2365817_2367140_+|MFS-transporter
MMKNKDHLLSSRRFLPMFLTQFFGALNDNVYKQSLLLVITYGWISQQSADVSTLNNLAALLFILPYFIFSATAGQIADKYERAKLVRAIKVLEIIIMLIGTAGFLTGHLILLMFALFLMGVHSTFFGPIKYAILPEILKPNELMSGNALFQSGTSIAILLGMILGGAVISLSEGHLIWISLTVVMIAIIGYCCSRYILKQNVAAPDLKIDWNFFRTSFQTIQYAKSIPLIFTILLGNSWYWFYGATYLTQIPQLTQQNLHASENVVSLLLTFFSVGIGAGSLLCRKIGGSELNIKMVPIGAVGLTVCALYLAASLAFVPERTGDFLSLSDIFSSGQVYYHVMLAVTLLGISGGFYIVPLYAMMQAYSPRSHRARVVAANNILNAVFMVSSAIFSILILSILKIDIKILFVITAVLSAIFTIWLLRKLPPMLHQAQDSLED
>NC_005966.1|WP_004928298.1|2362956_2365650_-|outer-membrane-protein-assembly-factor
MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQTVPPQPTMTDEQNNVSTLPTHQNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPDTTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIPPAQDIAQINQAPVNIDNLMQQIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVKGAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRVLVNVTPHDPVKIEQQDIGFSGEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAASDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGNVEFRMSDPSKKIPLDMDVLLSMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQNNQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESERNKLERQAREEKKVPVIVTLNADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDANMEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNIGQNITLETQSAVIGAERIIKNPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNNINPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDEFQKVPYNIRYFAGGDDSIRGFDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIFSDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGISDDNHPIRLHFFIGPQL
>NC_005966.1|WP_004928294.1|2358432_2362932_-|translocation/assembly-module-TamB-domain-containing-protein
MAELEQQPAQTPQKQRRILRSVLLTFAIIMLFLVSALTVMVSTDRGSKFLLDRVMERQQIIQYQYEGGNLLNGIILKNILVKLKDLDVKIDRADIHLGWRALINKEVHLSKADVQNLQIINYAKPTGEPFKFSEIKLPFILRLNAANIDHLRIQTGSTHVDFNDIYLEDALWSGTELKFEDSRFDMGYLAVQNATGQMTFSGKYPLSAQADLIIPSLNALNIKTIKVVAKGSLDTIEAGVATKTPDLLTGWAVIHPVRDHVPMFGQLIFKNYHLPILTEQKLFAKDGVAKFKGDVQSLGITLDTDLKGENIPEGRYNSAMQTDLVNGLDIHDFNGQLMGGSVSLAGRVGWHEQVTWDVKGRLNHLNPKDKVIPQVVQDFLPPSLDANLSSAGTLEKGVALTAHLDFDKYESWTIQLDQAAAKSNKVQPMLLDVSWKNINRAMPYIGWLDSDQGQVNLALVEGQQDIHVATNVRAHEQGSLPAGQYNARLDLKDNILNIPDFKYQGIQKGSLSGQAKVELPSEKRQLKWNALINAQDFNPQMISSAAPVDLINGQIKANGYAKPNQQIIQFDAINLKGHMASSNQKDLIELTGKSTAAILFHDEKSGGGFKGFAVKYDGGLNAFNQGKGLLRFNISGTPDFIRIGELQHDGVAGKIYANGSVNLKNAIGWDINASLVRFKPQYFVSTVKGELSGNLRTQGLWSEQSKRINVEKLNLAGYINNKIVRGMGNLAVVINSNQKGFLPQQFEANNLFLAYGQNQVQASGNAQNLRLNVNAPALNEIYTGLRGRAYGYLNVQAQPRLKATANLAVDNFGFNNISVKKVRIQGELPTSESVPTSLKATLNDLQSGTRQIQYAGITLSGTRKAHLVQLQGWNYYSKFYVQLAGGFNANNDWLGQIQQGIFDSRRAVLKQQQNAAVIYNQSRQELFVGQHCWASQQSQLCFDQPVRVSAARGNVSFATRNLDLGDFAAFMPEGLAITGKLNGYAKASWASGGKPQLDAQFITQNGEIGLAASDPQDPPSTLGYDQLSVIARTVPQGLLMRLDVKTDAIGTGYAKVIVNPYQKPMPMSGEVAFNNVQLKVFKPFISDVRSMGGTLSLAGKINGTLTQPQVTGELRLKDGAISMISLPVNLNNIQLYSSIRQDSASINGAFNSGRGVGTLTGNIDWKNDPRIQLNLKGENLLVRQAPLITAIVTPDLSMDAYPLSKRISVQGNVNVPRALISMPEATEPVVGVSSDVRIVREGQDQLAILKAAKPWDIRADIGVNIGNQVIFQGFNSRIPLVGRLNLTQRGLETAMNASGAIGVSQKVKIEAYGQSLDLNRAIARFNGPLSNPTLDVDANKNVQGSVVGVRVTGTASVPNIQIYNDAGLSEQEALNALVTGRINEGSSSLSNTAGFKSDVNNTIAAAGISMGLGGTRALTNQIGRTFGLSGLALDAQGTGDDTQVSLTGYITPDLFIRYGVGVFTPVNKLTLRYQMNKRLYLEASQALERSIDIFYNWRF
>NC_005966.1|WP_004928292.1|2358140_2358353_+|heavy-metal-associated-domain-containing-protein
MSTIQFTVEGMSCGGCSSKVKNTLEAFDQISQVEVELATGEVKVHVEPDQNIDKEQIKAAIEDLGFDVVN
>NC_005966.1|WP_004928319.1|2373208_2375191_+|hypothetical-protein
MTAWQQLGIEPTTNLREIKKAYAVKLKQIDQDTQPDQFIALREALQTAQYEAEYGLFDQEENQDSLFNDDQPLNFNEHTESAQENEINQSSDTLLEEIYLAIQQRIVEQDIHFNIREALQKFADHLDIVSEQATRLSYIERMDQLLLDHGLEDFLGYVAESSNHFTIASDQIDELYSHSETVIDLNDEQSDQNITQEIDPVINELYQVKQLLWEDNISDDVFERFSLLLNQQFDLPLGQQIEIKDQLMSAVAELRVDRMSPQYFRFLELWNDVYPDDVHEYNEHYYSRILQQRLHEYLQKRDLFKSLSHDDYSFLEHLSGSQSFRPFKMLHLQKQLKHHHPKQQVMDVLDQFEINDTASNINYNFLKSINQIKHFVLMNLVFSVVTFFVLDQFLSNLLTQRTLILISIGVFILFTLIIQPMIHAKILAFPNRDDLLYRYQKIWFISGFLMCIAASALPAILYSSLSYLWLIATIILLGCLKLDAHKNMNRIFQSAYIKYDYLMMGIGIAILCFGLSFVFYTLGQPHQPWLISYSLIPISCLLFPDSFRPLFYSFGSGKNTDDLNEQQIIRKTIIIILLRIAFVGSVGYFVISENSQHYIYAACLTFVGLFFTLFNTKKFSSFIKYTTYIATIIVGFHAIIISIITGFYLYKSLEIKKQLS
>NC_005966.1|WP_004928322.1|2375300_2377001_-|Hsp70-family-protein
MTEIKPLIGIDLGTSNSLVGVFENGQPRLIENAYGNKLTPSAIAMDEDEQILIGQAALELRASGRDVLTSFKRLMGTSKPLKLGDRSFSAVELSSLILRSLKQDAEHALQCEIDEAVITVPAYFNDIQRQATISAAELAGLKVSRLINEPTAAALAYGLGQSDDSCFLIFDLGGGTFDVSIVELFDGVIEVRASAGDNYLGGDDFVQLIMKQYWKKNASIFGYNETTIPYDVEIALKAKAQYCLHVLSKQTSTQLNFKWNDHEATFEISQDDLTNWAEPLLLRLRRPLERALRDARILPKQVDQIIMVGGATRIPAVRKLVTKLFGRFPSTSVQPDEAIVRGACIQAGLKAKDQSLKEVVLTDVCPFSLGIAVGDEGQFSPILERNIVIPASKVNTYTAMNKGQREIVVQIYQGEHRLCRENVSLGSLTVPLPPNDDYLSIDVRFSYNPNGILDVDVDVPATGEKLQKVVVNHQSVMSAEDVEKARLQLQSLKIHPRDNLMNKSLLLRAERLYSERTGDLRYQIGDRTERFNQILNQQDERQIREARQYFEAFLNEVEDLSLFEEY
>NC_005966.1|WP_004928324.1|2377176_2379747_+|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF
MLKQPFIQRIIQYAPVILFCIALLIIHKELETHEFSGLLKHWNNIPWSVALMACGLTLVNYLLLSLYDVLALRSLGYRTIAYKHILFTSFVSFAISNNTGHAWASGGSIRYRFYQKMGVQGWDIAKISAFLSLTFFIGLMTLGLGSIFIAPANVLNHIPHSPILYVLILLCAGFLIAYWAIVLFVQKPIKIKAISIDIPSPKTALLQTLLACSDLILASTVLWVLLKDIPGVSFETFLVIFVLAQLLGLVSQVPGGIGVFEGSFLWLSSNAFASSQPSIAIALVLYRVIYYFLPLLLTGIILVLKDFYQYRSKFLQAEKLATRIIPSVVPQIFSMFLFFIGAYMLFSGSMPSLPEKTHWLRNFIPLPLLEFSHLAGSFIGVLLLFLARGIHLKLDAAWYGALILLALGIFSSILTASDWFQIFALTSIFMAILISHRFFYRRSSLFKLSYNPIWFSSIALVILGTIWFGFFAYKHVEYSNDLWWQFSYKNDVSRFLRSLIVIGVVILMVLIWQLMGISKPKKPAQIDSNELDQIKKVLLNAHETQGFLALLGDKSIFWSDDETAFISYSMTQKYWVVMGDPVGNKATFAQLLWDFKEKADRYGAKIVFYQIGEKNLPLYLDLGLVLLKLGQEARVALSDFNLEGKKRENLRRGRNKLLKLEYQFKILELDQVEASMSRLKDISEQWLKQKNVHEKQFSLGSFREDYLLRTRVAVAISPEGKIMAFANLWETSTHEELSIDLMRYDPASPNGIMDFIFAELMLWGKQQGFLWFNLGMAPLSGLERHPLAPLWHKIGTTIFDLGEEFYNFEGLYEYKAKFNPEWESRYLASPPGLSAPFTLIAITKLIAGSWKGIVKK
>NC_005966.1|WP_004928327.1|2380000_2380771_-|3-hydroxyacyl-CoA-dehydrogenase
MKIQGKHFVITGGASGLGAAVAEYLIKQGAEISLIDMNIEAGHALVKLLGVKAQFFQLDVTSETQVEQFFIQMRDQAIELQGLINCAGIGPSAKVVGKEGLHDLALFNKVLNINVTGSFNMLRFAAQAMSTNKLDPQEEDRGVIINTASVAAFDGQIGQAAYAASKGAVVAMTLPIARELGRHAIRVMTIAPGIMETPMLKAMPQNVQDALGQMVPYPSRLGKPQEFAALVAHIIENSYLNGEVIRLDGAIRMAPK
>NC_005966.1|WP_004928330.1|2381236_2382061_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MNIGQALNLRGESDSYERQEAMWLLEHILELNSLELKMRQMQILTQEQEQQYLDGLMRLSKGEPLAYITGSQPFWSLDLNVTPDTLVPRPDTEILIETVLSLDLPEHCSMVDLGTGTGAIALSLAKERPYWKILATDIYFPTLEVAQSNAKKHALNQVKFLCSAWFEAIPSQKFDLIVSNPPYIDANDEHMLNLGTEPRRALVADKHGLADLEQIIGQAVLWLNTHGWIAVEHGYDQGQAVCQLLMDHNFAKVQTCKDYGGNDRISLGQWLADT
>NC_005966.1|WP_004928334.1|2382060_2383149_-|peptide-chain-release-factor-1
MKESLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLNEIVDVWSKYRQAEEDIETAESMLSDPDFKDMAQEEIKENRALIEQLEGDLNILMIPKDPNDANAAYLEVRAGTGGDEAAIFSGDLFRMYSKYAESRGWRIEVLSENEGEHGGYKEVICRVDGDGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVEINPADLRIDTYRASGAGGQHINKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMALLVSRLENAKRAAQETATSEMRRDLVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAMLAQENGG
>NC_005966.1|WP_004928336.1|2383618_2384068_+|glycine-zipper-2TM-domain-containing-protein
MKIHTWLLSAVLASSSMVAISAHADNTTRVAATSALGSVVGTALGNQMGGHTGAMIGSAIGGAGGAAAASNRRDRTESAIGGGLGGVGGYTVGRNMGGTNGGYIGAALGAAGGSALGNKIAKDKADDRRYSSNEGRGWKKHRRHHHRHP
>NC_005966.1|WP_026056828.1|2384223_2385228_+|LLM-class-flavin-dependent-oxidoreductase
MATLKDTHFSILELAPVRDDQTIQFSLHHALELAKHAEQLGYRRLWLAEHHNMDGIASSATAVLLGYLAANTQHLRLGSGGVMLPNHAPLVVAEQFGTLATLYPHRIELGLGRAPGTDQVTMRALRRGRQETEDQFPQDVLEILKYFDDPEPHQKIVATPGHGTHVPVWLLGSSLFSAQLAAKLGLPYSFASHFAPRMLSQAVQLYRENFQASKYLEQPYVSIGVPTVVAPTDEEAHFLATSAYQRVLGLMRGQSLKLKPPVKSMEHIWSASEKLSVNNFYAMAQVGSPATVKAGLEDLLEHVKVDEFIFTCDIYDTQKRLENFSYLMDIKNAL
>NC_005966.1|WP_004928342.1|2385309_2386749_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MNLMNARHLAYYDLDLMPHATQLSRQPHHTPVLGSHNVNFPSSIPLAERSDKNSEIDRLTGLPNQSGFKKQLHTLIASIHQKKNYNFGLILFDFDYFNQINTSHGHIVGDHILQTIASRIKKVLPQEVLLSRLGSDEFAILIPNVSSDISLMKIGSLVQQQVSLPLYYRDHIIESNISAGGAIYPRDINQDVNIVEAADIALCYLKQSGRGGCSIFRSEMLVEQNMIAQQFNRARHILRHNLVRPFYQPKFYLESGKLAGFEALLRWYDEDNQIQLPKLIINAFEDYSLASRLSEKMQLNIFKDMASWINQGLQLVPVSINAAPVEFLKDNYAELLLERLNQFEIPYHLIEIEITEHLLDDQGKNFISRALAKLKQNGIRIALDDFGTGHSSLTRLANLPVDCLKIDCDFVQRMEQEKFISALVQSVILMSNNLGIDVVAEGIESQEQLELLKQQGCEVGQGFLFSQALAPENARALLS
>NC_005966.1|WP_004928345.1|2386959_2387796_-|kinase/pyrophosphorylase
MSEGKLIKRSVFFISDGTAITAETLGHSLLAQFPNVDFDIHIMPYITTEEAAMNIVEEINQCQSRDGTLPLVFDTLVDPNVREIINTSKAVNLDVFEGLISKLEQVLGTPPTTLVGQTHAVTDSEYYKARIDAVHFALDNDDGALTRHYDKADIILIGVSRSGKTPTSIYLSLQFGIRVANYPLTEEDLDDNRLPKVLKEHKNKLFGLMIDAERLVAIRTERKANSRYASYSQCQMELRAVEGIFISEGIPYLNVSEMSIEEISTRILQMTGLKRRIG

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Crispr_ID: NC_005966_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005966_3

2448115-2453542

TypeI-F

Consensus_repeat	Method
GTTCGTCATCGCATAGATGATTTAGAAA	CRISPRCasFinder
GTTCGTCATCGCATAGATGATTTAGAAA	CRT
GTTCGTCATCGCATAGATGATTTAGAAA	PILER-CR

90 spacers

cas1,cas6f,cas7f,cas5f,cas8f,cas3f

The CRISPR arrays of NC_005966_3

>merge|NC_005966|3|2448115-2453542|CRISPRCasFinder,CRT,PILER-CR
GTTCGTCATCGCATAGATGATTTAGAAAGACACCAAAGGTAATAAAGCTATGAAAGAATAGTTCGTCATCGCATAGATGATTTAGAAATTTACTCTTATTATACTATTACCCCTAACCCCGTTCGTCATCGCATAGATGATTTAGAAATCCAGCTAAAATCGTTTGAGGGTGAAACTCCTGTTCGTCATCGCATAGATGATTTAGAAAATGATTTCGAAAGGCTCTCCGAGTACGTTATTGTTCGTCATCGCATAGATGATTTAGAAAATTCCCAGCATTCACGCTGAGTGCTTCGGCACGTTCGTCATCGCATAGATGATTTAGAAATGTGCAGCCGTTTGGCGCGCCCCAGATATGCGGTTCGTCATCGCATAGATGATTTAGAAAAGGAACCGTGGCAGATTGCGTTAATATGTTAGGTTCGTCATCGCATAGATGATTTAGAAATAACGATGGAATAACGTTCAAAGAATCTAACGGTTCGTCATCGCATAGATGATTTAGAAAAATTCATGAAAGATCATTCGCTGTGTTTGGGGGTTCGTCATCGCATAGATGATTTAGAAAATTTGCCGCTTTGAATATTTGATGCACCTGCTGTTCGTCATCGCATAGATGATTTAGAAAAAATCGATGAGGGACAACATCAGGCACTCGACGTTCGTCATCGCATAGATGATTTAGAAAACAGGGCAGGGAAATAACCAAAAATCGATATAGTTCGTCATCGCATAGATGATTTAGAAAGACATAGGAACGATATGAAGATGATTTTTTTTGTTCGTCATCGCATAGATGATTTAGAAAATCAAGCTATCGTCATTTGGCCGATACACAGCGTTCGTCATCGCATAGATGATTTAGAAATCTGCCATGCATACAATTTGATTTGGCTGCGTGTTCGTCATCGCATAGATGATTTAGAAAAATCATCAATATCTTTTTGCGCTTTGCGTGAAGTTCGTCATCGCATAGATGATTTAGAAATCTCACGTACAAAAAAAAATCCTATTTGATGTGTTCGTCATCGCATAGATGATTTAGAAAGCGATTGAATACCGATAGATCGGGGATATTAAGTTCGTCATCGCATAGATGATTTAGAAAATACACTACATTGAACTGCTCGGACTTAAGCATGTTCGTCATCGCATAGATGATTTAGAAAAAAAAAAGTGTAGCCAACTTCATACAGTTACCGTTCGTCATCGCATAGATGATTTAGAAACAGGTGGCAGCGTTCCATTTTCGGGGGCAAATGTTCGTCATCGCATAGATGATTTAGAAAAAAACCACATTATAAGGCTCGGTAAATGTGTAGTTCGTCATCGCATAGATGATTTAGAAAATGAAAATAAGCCCCAATATTGTCAGTGTTCCGTTCGTCATCGCATAGATGATTTAGAAAGTTTCCGCGTCATTCGGGTACAGTTGCGACATGTTCGTCATCGCATAGATGATTTAGAAATTGAAACCTATGAACTTTGTGTTATACGTGTCGTTCGTCATCGCATAGATGATTTAGAAACTTATCAAAATCGGTGGGATCTTTGTCGTACTGTTCGTCATCGCATAGATGATTTAGAAAGAATTATGCTTTAAAAAATCCTTTCGCGGGTAGTTCGTCATCGCATAGATGATTTAGAAAAATCCGATTTCTGCTGTTGCTGGGGTTAGAGCGTTCGTCATCGCATAGATGATTTAGAAAATGTACTATAAGTCACATGGTAAAGACACGAAGTTCGTCATCGCATAGATGATTTAGAAAGAAACGTTGAATCCAGAACCAGCAATCCCAGCGTTCGTCATCGCATAGATGATTTAGAAAAAACTGTGGAGCATTACATCTACCATACTGCCGTTCGTCATCGCATAGATGATTTAGAAATAAAACAGTCAATGTTAATTGGGGTGAACAATGTTCGTCATCGCATAGATGATTTAGAAAGCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGGGTTCGTCATCGCATAGATGATTTAGAAATATAACTAGCATGTCAGAAATAAAACTATCCGGTTCGTCATCGCATAGATGATTTAGAAACGTTGGTACTGTTGCAGGTGGTGCATTGGGGAGTTCGTCATCGCATAGATGATTTAGAAAGACTCCGCTACTTAAGAAAGAGAGCATAGGTGGTTCGTCATCGCATAGATGATTTAGAAATAGAAGTAACTTACGATAACATCTTTGGCGCCGTTCGTCATCGCATAGATGATTTAGAAATCAAGCATGTGATCACTAATGATTCGGTTTTTGTTCGTCATCGCATAGATGATTTAGAAATATACTCCTTATATGTAATTTACGCGTAAACCGTTCGTCATCGCATAGATGATTTAGAAACACTACATTTATACCCGCCGTTTACGCTCTTAGTTCGTCATCGCATAGATGATTTAGAAAGTTTAATGTGGCGTTCAGGTCTTGTTCGCCAAGTTCGTCATCGCATAGATGATTTAGAAAACTCAGTTGACCAATCTTACTGCTTCACTTAAGTTCGTCATCGCATAGATGATTTAGAAAAGAAGATTTGGTGGGCAAAAATATGGAATATAGTTCGTCATCGCATAGATGATTTAGAAAATTCTTAGCTGCATCACGCAAGATTTGCTTTTGTTCGTCATCGCATAGATGATTTAGAAACTCATCGAAACATACATTGAGAAAAATCATTTGTTCGTCATCGCATAGATGATTTAGAAAAATCATCATCGACCGCAGTATTGAAGCGAAGCGTTCGTCATCGCATAGATGATTTAGAAAAGCCCTTCGTATATTTGAATAGTGCATTGGCTGTTCGTCATCGCATAGATGATTTAGAAAAAAAATACCCGCGCCCAAGTGATCCTGAAGAGTTCGTCATCGCATAGATGATTTAGAAAAACCATATAGAATTGTTAACTTTTGTAAATAAGTTCGTCATCGCATAGATGATTTAGAAAGATCAAAACAACAAGCGTACCAATGATGCCGAGTTCGTCATCGCATAGATGATTTAGAAAACAAGGGATGTATTGACCAGGTGTGAGCGCAAGTTCGTCATCGCATAGATGATTTAGAAAATTCTTGAGCCGCCTGCAGATTTGTTATGTCAGTTCGTCATCGCATAGATGATTTAGAAAATGGTTCGGGGTTGTAGCTGTACGCCCCAGATGTTCGTCATCGCATAGATGATTTAGAAAAAGAGCAAAAGGTAACTTGGATCTACCGCCACGTTCGTCATCGCATAGATGATTTAGAAACACGGAAATTGGAATGATGATTTCGACGGTAAGTTCGTCATCGCATAGATGATTTAGAAATTGTTGAGCAGCAGAACGGCCTTTTACCAACCGTTCGTCATCGCATAGATGATTTAGAAAAGATACCTCAGTCCAAGCTGCTGAATTTTATCGTTCGTCATCGCATAGATGATTTAGAAAAAGAGACAACAGGGCTTATTAAAGTAACTTGTGTTCGTCATCGCATAGATGATTTAGAAAAAGTTTTATTTAAGCCCAAAGCTAAAGATAGTGTTCGTCATCGCATAGATGATTTAGAAAGTTAGCTGCACAAGCTCTGGGACTTTAATAAAGTTCGTCATCGCATAGATGATTTAGAAAAATCGCTAACCAGTAGAACCCGCGTAGCAGCGGTTCGTCATCGCATAGATGATTTAGAAAAAGCGTTGCGAGCGCTCAAAAAGTGGCTGATCGTTCGTCATCGCATAGATGATTTAGAAAGTCTACCAAAGCGAAAGTATCATTTTCAATGAGTTCGTCATCGCATAGATGATTTAGAAATGTATCGGAGCTACGTCAGAAGGTCAAGCACAGTTCGTCATCGCATAGATGATTTAGAAAAGGTCGATTTATCATAAACATCGGGCACGATAGTTCGTCATCGCATAGATGATTTAGAAAGCCAGAAATTTTGACACTTGCGTTTAGCAATAGTTCGTCATCGCATAGATGATTTAGAAAAGATTGTCTCTAAATTTAACGCGTGGCTTTGTGTTCGTCATCGCATAGATGATTTAGAAAAAAGCCGAGCCCAACTTTTGACGCACAAAAAGGTTCGTCATCGCATAGATGATTTAGAAAGTCAGTGATTGCTTTCATTGCCGTAGCTACGTGTTCGTCATCGCATAGATGATTTAGAAAATCCGCGCCCAATTTGTCCCACCAATCTTTTTGTTCGTCATCGCATAGATGATTTAGAAAGATTCCATAGAACGTACCATTGACGCGCAACAGTTCGTCATCGCATAGATGATTTAGAAATGGATCTCTGCAGAAATCACATTGTCCAAATAGTTCGTCATCGCATAGATGATTTAGAAAAACAGGCGTTACTGAGCTATGTGTCGTTAAAAGTTCGTCATCGCATAGATGATTTAGAAAAAGCATGCCTTGATGCATACAACAAAATTGCCGTTCGTCATCGCATAGATGATTTAGAAATGCGAGTTCAAACTTCTTTAAAGATGCAACATGTTCGTCATCGCATAGATGATTTAGAAACGTGGAATCATAATCATAAGCTTCACCGACACGTTCGTCATCGCATAGATGATTTAGAAAGATCAGTGGCGCGTCTACAGTGAGCGAGTGGGGTTCGTCATCGCATAGATGATTTAGAAAATAATTGCAACAACAGCATAATATACATACCAGTTCGTCATCGCATAGATGATTTAGAAACTTACTTTCGCTTGCGCTTCGTTACGAATGCCGTTCGTCATCGCATAGATGATTTAGAAATCAACCAGGATCGGATAACCATCAATTCTAAAGTTCGTCATCGCATAGATGATTTAGAAAAACAGGCGTTACTGAGCTATGTGTCGTTAAAAGTTCGTCATCGCATAGATGATTTAGAAAAAGCATGCCTTGATGCATACAACAAAATTGCCGTTCGTCATCGCATAGATGATTTAGAAACAAATGTAATCAGGATTAGTCGATTGCAGCGTGTTCGTCATCGCATAGATGATTTAGAAAAGATCGCCTGTGCGTAGGTCAACTGCACCATTGTTCGTCATCGCATAGATGATTTAGAAAAGCTGAACACGCCGTTTTTTAACTTCCGCCATGTTCGTCATCGCATAGATGATTTAGAAAATGCACCTGATCCTGCCCAATGAGGGATTTACATTCGTCATCGCATAGATGATTTAGAAATGATGGTGCAGGAACCACAGCAACATCAGTCAGTTCGTCATCGCATAGATGATTTAGAAAGATTGAAATACTATTAAGGCTGTTCGTAAAGCGTTCGTCATCGCATAGATGATTTAGAAAACACACGCTGCCAATTCTTCGTTAGAGTGTATGTTCGTCATCGCATAGATGATTTAGAAAAGCAGTAAAAGCCATGACCGTTAAGATCGCTCGTTCGTCATCGCATAGATGATTTAGAAA

>NC_005966|3|3|2448115-2453542|CRISPRCasFinder
GTTCGTCATCGCATAGATGATTTAGAAA	GACACCAAAGGTAATAAAGCTATGAAAGAATA
GTTCGTCATCGCATAGATGATTTAGAAA	TTTACTCTTATTATACTATTACCCCTAACCCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT
GTTCGTCATCGCATAGATGATTTAGAAA	ATGATTTCGAAAGGCTCTCCGAGTACGTTATT
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC
GTTCGTCATCGCATAGATGATTTAGAAA	TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG
GTTCGTCATCGCATAGATGATTTAGAAA	AGGAACCGTGGCAGATTGCGTTAATATGTTAG
GTTCGTCATCGCATAGATGATTTAGAAA	TAACGATGGAATAACGTTCAAAGAATCTAACG
GTTCGTCATCGCATAGATGATTTAGAAA	AATTCATGAAAGATCATTCGCTGTGTTTGGGG
GTTCGTCATCGCATAGATGATTTAGAAA	ATTTGCCGCTTTGAATATTTGATGCACCTGCT
GTTCGTCATCGCATAGATGATTTAGAAA	AAATCGATGAGGGACAACATCAGGCACTCGAC
GTTCGTCATCGCATAGATGATTTAGAAA	ACAGGGCAGGGAAATAACCAAAAATCGATATA
GTTCGTCATCGCATAGATGATTTAGAAA	GACATAGGAACGATATGAAGATGATTTTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCAAGCTATCGTCATTTGGCCGATACACAGC
GTTCGTCATCGCATAGATGATTTAGAAA	TCTGCCATGCATACAATTTGATTTGGCTGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCAATATCTTTTTGCGCTTTGCGTGAA
GTTCGTCATCGCATAGATGATTTAGAAA	TCTCACGTACAAAAAAAAATCCTATTTGATGT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGATTGAATACCGATAGATCGGGGATATTAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATACACTACATTGAACTGCTCGGACTTAAGCAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAAAAGTGTAGCCAACTTCATACAGTTACC
GTTCGTCATCGCATAGATGATTTAGAAA	CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAACCACATTATAAGGCTCGGTAAATGTGTA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGAAAATAAGCCCCAATATTGTCAGTGTTCC
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTCCGCGTCATTCGGGTACAGTTGCGACAT
GTTCGTCATCGCATAGATGATTTAGAAA	TTGAAACCTATGAACTTTGTGTTATACGTGTC
GTTCGTCATCGCATAGATGATTTAGAAA	CTTATCAAAATCGGTGGGATCTTTGTCGTACT
GTTCGTCATCGCATAGATGATTTAGAAA	GAATTATGCTTTAAAAAATCCTTTCGCGGGTA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ATGTACTATAAGTCACATGGTAAAGACACGAA
GTTCGTCATCGCATAGATGATTTAGAAA	GAAACGTTGAATCCAGAACCAGCAATCCCAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AAACTGTGGAGCATTACATCTACCATACTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TAAAACAGTCAATGTTAATTGGGGTGAACAAT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG
GTTCGTCATCGCATAGATGATTTAGAAA	TATAACTAGCATGTCAGAAATAAAACTATCCG
GTTCGTCATCGCATAGATGATTTAGAAA	CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA
GTTCGTCATCGCATAGATGATTTAGAAA	GACTCCGCTACTTAAGAAAGAGAGCATAGGTG
GTTCGTCATCGCATAGATGATTTAGAAA	TAGAAGTAACTTACGATAACATCTTTGGCGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAAGCATGTGATCACTAATGATTCGGTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	TATACTCCTTATATGTAATTTACGCGTAAACC
GTTCGTCATCGCATAGATGATTTAGAAA	CACTACATTTATACCCGCCGTTTACGCTCTTA
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ACTCAGTTGACCAATCTTACTGCTTCACTTAA
GTTCGTCATCGCATAGATGATTTAGAAA	AGAAGATTTGGTGGGCAAAAATATGGAATATA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTAGCTGCATCACGCAAGATTTGCTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	CTCATCGAAACATACATTGAGAAAAATCATTT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCATCGACCGCAGTATTGAAGCGAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AGCCCTTCGTATATTTGAATAGTGCATTGGCT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAATACCCGCGCCCAAGTGATCCTGAAGA
GTTCGTCATCGCATAGATGATTTAGAAA	AACCATATAGAATTGTTAACTTTTGTAAATAA
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAAAACAACAAGCGTACCAATGATGCCGA
GTTCGTCATCGCATAGATGATTTAGAAA	ACAAGGGATGTATTGACCAGGTGTGAGCGCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGCAAAAGGTAACTTGGATCTACCGCCAC
GTTCGTCATCGCATAGATGATTTAGAAA	CACGGAAATTGGAATGATGATTTCGACGGTAA
GTTCGTCATCGCATAGATGATTTAGAAA	TTGTTGAGCAGCAGAACGGCCTTTTACCAACC
GTTCGTCATCGCATAGATGATTTAGAAA	AGATACCTCAGTCCAAGCTGCTGAATTTTATC
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGACAACAGGGCTTATTAAAGTAACTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT
GTTCGTCATCGCATAGATGATTTAGAAA	GTTAGCTGCACAAGCTCTGGGACTTTAATAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCGCTAACCAGTAGAACCCGCGTAGCAGCG
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC
GTTCGTCATCGCATAGATGATTTAGAAA	GTCTACCAAAGCGAAAGTATCATTTTCAATGA
GTTCGTCATCGCATAGATGATTTAGAAA	TGTATCGGAGCTACGTCAGAAGGTCAAGCACA
GTTCGTCATCGCATAGATGATTTAGAAA	AGGTCGATTTATCATAAACATCGGGCACGATA
GTTCGTCATCGCATAGATGATTTAGAAA	GCCAGAAATTTTGACACTTGCGTTTAGCAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AGATTGTCTCTAAATTTAACGCGTGGCTTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAGCCGAGCCCAACTTTTGACGCACAAAAAG
GTTCGTCATCGCATAGATGATTTAGAAA	GTCAGTGATTGCTTTCATTGCCGTAGCTACGT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCCGCGCCCAATTTGTCCCACCAATCTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	GATTCCATAGAACGTACCATTGACGCGCAACA
GTTCGTCATCGCATAGATGATTTAGAAA	TGGATCTCTGCAGAAATCACATTGTCCAAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TGCGAGTTCAAACTTCTTTAAAGATGCAACAT
GTTCGTCATCGCATAGATGATTTAGAAA	CGTGGAATCATAATCATAAGCTTCACCGACAC
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG
GTTCGTCATCGCATAGATGATTTAGAAA	ATAATTGCAACAACAGCATAATATACATACCA
GTTCGTCATCGCATAGATGATTTAGAAA	CTTACTTTCGCTTGCGCTTCGTTACGAATGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAACCAGGATCGGATAACCATCAATTCTAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	CAAATGTAATCAGGATTAGTCGATTGCAGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AGATCGCCTGTGCGTAGGTCAACTGCACCATT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCTGAACACGCCGTTTTTTAACTTCCGCCAT
GTTCGTCATCGCATAGATGATTTAGAAA	ATGCACCTGATCCTGCCCAATGAGGGATTTAC
ATTCGTCATCGCATAGATGATTTAGAAA	TGATGGTGCAGGAACCACAGCAACATCAGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	GATTGAAATACTATTAAGGCTGTTCGTAAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ACACACGCTGCCAATTCTTCGTTAGAGTGTAT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCAGTAAAAGCCATGACCGTTAAGATCGCTC
GTTCGTCATCGCATAGATGATTTAGAAA

>NC_005966|3|3|2448115-2453542|CRT
GTTCGTCATCGCATAGATGATTTAGAAA	GACACCAAAGGTAATAAAGCTATGAAAGAATA
GTTCGTCATCGCATAGATGATTTAGAAA	TTTACTCTTATTATACTATTACCCCTAACCCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT
GTTCGTCATCGCATAGATGATTTAGAAA	ATGATTTCGAAAGGCTCTCCGAGTACGTTATT
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC
GTTCGTCATCGCATAGATGATTTAGAAA	TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG
GTTCGTCATCGCATAGATGATTTAGAAA	AGGAACCGTGGCAGATTGCGTTAATATGTTAG
GTTCGTCATCGCATAGATGATTTAGAAA	TAACGATGGAATAACGTTCAAAGAATCTAACG
GTTCGTCATCGCATAGATGATTTAGAAA	AATTCATGAAAGATCATTCGCTGTGTTTGGGG
GTTCGTCATCGCATAGATGATTTAGAAA	ATTTGCCGCTTTGAATATTTGATGCACCTGCT
GTTCGTCATCGCATAGATGATTTAGAAA	AAATCGATGAGGGACAACATCAGGCACTCGAC
GTTCGTCATCGCATAGATGATTTAGAAA	ACAGGGCAGGGAAATAACCAAAAATCGATATA
GTTCGTCATCGCATAGATGATTTAGAAA	GACATAGGAACGATATGAAGATGATTTTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCAAGCTATCGTCATTTGGCCGATACACAGC
GTTCGTCATCGCATAGATGATTTAGAAA	TCTGCCATGCATACAATTTGATTTGGCTGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCAATATCTTTTTGCGCTTTGCGTGAA
GTTCGTCATCGCATAGATGATTTAGAAA	TCTCACGTACAAAAAAAAATCCTATTTGATGT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGATTGAATACCGATAGATCGGGGATATTAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATACACTACATTGAACTGCTCGGACTTAAGCAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAAAAGTGTAGCCAACTTCATACAGTTACC
GTTCGTCATCGCATAGATGATTTAGAAA	CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAACCACATTATAAGGCTCGGTAAATGTGTA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGAAAATAAGCCCCAATATTGTCAGTGTTCC
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTCCGCGTCATTCGGGTACAGTTGCGACAT
GTTCGTCATCGCATAGATGATTTAGAAA	TTGAAACCTATGAACTTTGTGTTATACGTGTC
GTTCGTCATCGCATAGATGATTTAGAAA	CTTATCAAAATCGGTGGGATCTTTGTCGTACT
GTTCGTCATCGCATAGATGATTTAGAAA	GAATTATGCTTTAAAAAATCCTTTCGCGGGTA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ATGTACTATAAGTCACATGGTAAAGACACGAA
GTTCGTCATCGCATAGATGATTTAGAAA	GAAACGTTGAATCCAGAACCAGCAATCCCAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AAACTGTGGAGCATTACATCTACCATACTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TAAAACAGTCAATGTTAATTGGGGTGAACAAT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG
GTTCGTCATCGCATAGATGATTTAGAAA	TATAACTAGCATGTCAGAAATAAAACTATCCG
GTTCGTCATCGCATAGATGATTTAGAAA	CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA
GTTCGTCATCGCATAGATGATTTAGAAA	GACTCCGCTACTTAAGAAAGAGAGCATAGGTG
GTTCGTCATCGCATAGATGATTTAGAAA	TAGAAGTAACTTACGATAACATCTTTGGCGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAAGCATGTGATCACTAATGATTCGGTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	TATACTCCTTATATGTAATTTACGCGTAAACC
GTTCGTCATCGCATAGATGATTTAGAAA	CACTACATTTATACCCGCCGTTTACGCTCTTA
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ACTCAGTTGACCAATCTTACTGCTTCACTTAA
GTTCGTCATCGCATAGATGATTTAGAAA	AGAAGATTTGGTGGGCAAAAATATGGAATATA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTAGCTGCATCACGCAAGATTTGCTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	CTCATCGAAACATACATTGAGAAAAATCATTT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCATCGACCGCAGTATTGAAGCGAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AGCCCTTCGTATATTTGAATAGTGCATTGGCT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAATACCCGCGCCCAAGTGATCCTGAAGA
GTTCGTCATCGCATAGATGATTTAGAAA	AACCATATAGAATTGTTAACTTTTGTAAATAA
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAAAACAACAAGCGTACCAATGATGCCGA
GTTCGTCATCGCATAGATGATTTAGAAA	ACAAGGGATGTATTGACCAGGTGTGAGCGCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGCAAAAGGTAACTTGGATCTACCGCCAC
GTTCGTCATCGCATAGATGATTTAGAAA	CACGGAAATTGGAATGATGATTTCGACGGTAA
GTTCGTCATCGCATAGATGATTTAGAAA	TTGTTGAGCAGCAGAACGGCCTTTTACCAACC
GTTCGTCATCGCATAGATGATTTAGAAA	AGATACCTCAGTCCAAGCTGCTGAATTTTATC
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGACAACAGGGCTTATTAAAGTAACTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT
GTTCGTCATCGCATAGATGATTTAGAAA	GTTAGCTGCACAAGCTCTGGGACTTTAATAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCGCTAACCAGTAGAACCCGCGTAGCAGCG
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC
GTTCGTCATCGCATAGATGATTTAGAAA	GTCTACCAAAGCGAAAGTATCATTTTCAATGA
GTTCGTCATCGCATAGATGATTTAGAAA	TGTATCGGAGCTACGTCAGAAGGTCAAGCACA
GTTCGTCATCGCATAGATGATTTAGAAA	AGGTCGATTTATCATAAACATCGGGCACGATA
GTTCGTCATCGCATAGATGATTTAGAAA	GCCAGAAATTTTGACACTTGCGTTTAGCAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AGATTGTCTCTAAATTTAACGCGTGGCTTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAGCCGAGCCCAACTTTTGACGCACAAAAAG
GTTCGTCATCGCATAGATGATTTAGAAA	GTCAGTGATTGCTTTCATTGCCGTAGCTACGT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCCGCGCCCAATTTGTCCCACCAATCTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	GATTCCATAGAACGTACCATTGACGCGCAACA
GTTCGTCATCGCATAGATGATTTAGAAA	TGGATCTCTGCAGAAATCACATTGTCCAAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TGCGAGTTCAAACTTCTTTAAAGATGCAACAT
GTTCGTCATCGCATAGATGATTTAGAAA	CGTGGAATCATAATCATAAGCTTCACCGACAC
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG
GTTCGTCATCGCATAGATGATTTAGAAA	ATAATTGCAACAACAGCATAATATACATACCA
GTTCGTCATCGCATAGATGATTTAGAAA	CTTACTTTCGCTTGCGCTTCGTTACGAATGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAACCAGGATCGGATAACCATCAATTCTAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	CAAATGTAATCAGGATTAGTCGATTGCAGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AGATCGCCTGTGCGTAGGTCAACTGCACCATT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCTGAACACGCCGTTTTTTAACTTCCGCCAT
GTTCGTCATCGCATAGATGATTTAGAAA	ATGCACCTGATCCTGCCCAATGAGGGATTTAC
ATTCGTCATCGCATAGATGATTTAGAAA	TGATGGTGCAGGAACCACAGCAACATCAGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	GATTGAAATACTATTAAGGCTGTTCGTAAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ACACACGCTGCCAATTCTTCGTTAGAGTGTAT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCAGTAAAAGCCATGACCGTTAAGATCGCTC
GTTCGTCATCGCATAGATGATTTAGAAA

>NC_005966|3|2|2448775-2453542|PILER-CR
GTTCGTCATCGCATAGATGATTTAGAAA	ACAGGGCAGGGAAATAACCAAAAATCGATATA
GTTCGTCATCGCATAGATGATTTAGAAA	GACATAGGAACGATATGAAGATGATTTTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCAAGCTATCGTCATTTGGCCGATACACAGC
GTTCGTCATCGCATAGATGATTTAGAAA	TCTGCCATGCATACAATTTGATTTGGCTGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCAATATCTTTTTGCGCTTTGCGTGAA
GTTCGTCATCGCATAGATGATTTAGAAA	TCTCACGTACAAAAAAAAATCCTATTTGATGT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGATTGAATACCGATAGATCGGGGATATTAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATACACTACATTGAACTGCTCGGACTTAAGCAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAAAAGTGTAGCCAACTTCATACAGTTACC
GTTCGTCATCGCATAGATGATTTAGAAA	CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAACCACATTATAAGGCTCGGTAAATGTGTA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGAAAATAAGCCCCAATATTGTCAGTGTTCC
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTCCGCGTCATTCGGGTACAGTTGCGACAT
GTTCGTCATCGCATAGATGATTTAGAAA	TTGAAACCTATGAACTTTGTGTTATACGTGTC
GTTCGTCATCGCATAGATGATTTAGAAA	CTTATCAAAATCGGTGGGATCTTTGTCGTACT
GTTCGTCATCGCATAGATGATTTAGAAA	GAATTATGCTTTAAAAAATCCTTTCGCGGGTA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ATGTACTATAAGTCACATGGTAAAGACACGAA
GTTCGTCATCGCATAGATGATTTAGAAA	GAAACGTTGAATCCAGAACCAGCAATCCCAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AAACTGTGGAGCATTACATCTACCATACTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TAAAACAGTCAATGTTAATTGGGGTGAACAAT
GTTCGTCATCGCATAGATGATTTAGAAA	GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG
GTTCGTCATCGCATAGATGATTTAGAAA	TATAACTAGCATGTCAGAAATAAAACTATCCG
GTTCGTCATCGCATAGATGATTTAGAAA	CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA
GTTCGTCATCGCATAGATGATTTAGAAA	GACTCCGCTACTTAAGAAAGAGAGCATAGGTG
GTTCGTCATCGCATAGATGATTTAGAAA	TAGAAGTAACTTACGATAACATCTTTGGCGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAAGCATGTGATCACTAATGATTCGGTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	TATACTCCTTATATGTAATTTACGCGTAAACC
GTTCGTCATCGCATAGATGATTTAGAAA	CACTACATTTATACCCGCCGTTTACGCTCTTA
GTTCGTCATCGCATAGATGATTTAGAAA	GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ACTCAGTTGACCAATCTTACTGCTTCACTTAA
GTTCGTCATCGCATAGATGATTTAGAAA	AGAAGATTTGGTGGGCAAAAATATGGAATATA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTAGCTGCATCACGCAAGATTTGCTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	CTCATCGAAACATACATTGAGAAAAATCATTT
GTTCGTCATCGCATAGATGATTTAGAAA	AATCATCATCGACCGCAGTATTGAAGCGAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	AGCCCTTCGTATATTTGAATAGTGCATTGGCT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAAATACCCGCGCCCAAGTGATCCTGAAGA
GTTCGTCATCGCATAGATGATTTAGAAA	AACCATATAGAATTGTTAACTTTTGTAAATAA
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAAAACAACAAGCGTACCAATGATGCCGA
GTTCGTCATCGCATAGATGATTTAGAAA	ACAAGGGATGTATTGACCAGGTGTGAGCGCAA
GTTCGTCATCGCATAGATGATTTAGAAA	ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGCAAAAGGTAACTTGGATCTACCGCCAC
GTTCGTCATCGCATAGATGATTTAGAAA	CACGGAAATTGGAATGATGATTTCGACGGTAA
GTTCGTCATCGCATAGATGATTTAGAAA	TTGTTGAGCAGCAGAACGGCCTTTTACCAACC
GTTCGTCATCGCATAGATGATTTAGAAA	AGATACCTCAGTCCAAGCTGCTGAATTTTATC
GTTCGTCATCGCATAGATGATTTAGAAA	AAGAGACAACAGGGCTTATTAAAGTAACTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT
GTTCGTCATCGCATAGATGATTTAGAAA	GTTAGCTGCACAAGCTCTGGGACTTTAATAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AATCGCTAACCAGTAGAACCCGCGTAGCAGCG
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC
GTTCGTCATCGCATAGATGATTTAGAAA	GTCTACCAAAGCGAAAGTATCATTTTCAATGA
GTTCGTCATCGCATAGATGATTTAGAAA	TGTATCGGAGCTACGTCAGAAGGTCAAGCACA
GTTCGTCATCGCATAGATGATTTAGAAA	AGGTCGATTTATCATAAACATCGGGCACGATA
GTTCGTCATCGCATAGATGATTTAGAAA	GCCAGAAATTTTGACACTTGCGTTTAGCAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AGATTGTCTCTAAATTTAACGCGTGGCTTTGT
GTTCGTCATCGCATAGATGATTTAGAAA	AAAGCCGAGCCCAACTTTTGACGCACAAAAAG
GTTCGTCATCGCATAGATGATTTAGAAA	GTCAGTGATTGCTTTCATTGCCGTAGCTACGT
GTTCGTCATCGCATAGATGATTTAGAAA	ATCCGCGCCCAATTTGTCCCACCAATCTTTTT
GTTCGTCATCGCATAGATGATTTAGAAA	GATTCCATAGAACGTACCATTGACGCGCAACA
GTTCGTCATCGCATAGATGATTTAGAAA	TGGATCTCTGCAGAAATCACATTGTCCAAATA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TGCGAGTTCAAACTTCTTTAAAGATGCAACAT
GTTCGTCATCGCATAGATGATTTAGAAA	CGTGGAATCATAATCATAAGCTTCACCGACAC
GTTCGTCATCGCATAGATGATTTAGAAA	GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG
GTTCGTCATCGCATAGATGATTTAGAAA	ATAATTGCAACAACAGCATAATATACATACCA
GTTCGTCATCGCATAGATGATTTAGAAA	CTTACTTTCGCTTGCGCTTCGTTACGAATGCC
GTTCGTCATCGCATAGATGATTTAGAAA	TCAACCAGGATCGGATAACCATCAATTCTAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
GTTCGTCATCGCATAGATGATTTAGAAA	AAGCATGCCTTGATGCATACAACAAAATTGCC
GTTCGTCATCGCATAGATGATTTAGAAA	CAAATGTAATCAGGATTAGTCGATTGCAGCGT
GTTCGTCATCGCATAGATGATTTAGAAA	AGATCGCCTGTGCGTAGGTCAACTGCACCATT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCTGAACACGCCGTTTTTTAACTTCCGCCAT
GTTCGTCATCGCATAGATGATTTAGAAA	ATGCACCTGATCCTGCCCAATGAGGGATTTAC
ATTCGTCATCGCATAGATGATTTAGAAA	TGATGGTGCAGGAACCACAGCAACATCAGTCA
GTTCGTCATCGCATAGATGATTTAGAAA	GATTGAAATACTATTAAGGCTGTTCGTAAAGC
GTTCGTCATCGCATAGATGATTTAGAAA	ACACACGCTGCCAATTCTTCGTTAGAGTGTAT
GTTCGTCATCGCATAGATGATTTAGAAA	AGCAGTAAAAGCCATGACCGTTAAGATCGCTC
GTTCGTCATCGCATAGATGATTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_005966.1\|WP_004928507.1\|2454580_2458045_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_005966.1\|WP_004928487.1\|2444462_2445347_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NC_005966.1\|WP_004928485.1\|2443299_2444466_+\|hypothetical-protein	cas8f	cls000849_cas8f_CAS-I-F	gnl\|CDD\|378220
NC_005966.1\|WP_004928488.1\|2445376_2446438_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
NC_005966.1\|WP_011182532.1\|2460085_2460157_+\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|273976
NC_005966.1\|WP_004928481.1\|2439176_2442413_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NC_005966.1\|WP_004928524.1\|2461898_2462174_+\|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD	unknown	unknown	gnl\|CDD\|179362
NC_005966.1\|WP_004928490.1\|2446440_2447052_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_005966.1\|WP_004928503.1\|2453621_2454584_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381147
NC_005966.1\|WP_004928475.1\|2435552_2436629_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_005966.1\|WP_004928491.1\|2447063_2448017_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_005966.1\|WP_004928483.1\|2442871_2443189_+\|phage-antirepressor-KilAC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377029
NC_005966.1\|WP_004928479.1\|2438441_2439131_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NC_005966.1\|WP_004928534.1\|2464427_2465213_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|237100
NC_005966.1\|WP_004928517.1\|2460230_2461145_+\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	unknown	unknown	gnl\|CDD\|235361
NC_005966.1\|WP_004928514.1\|2458235_2459858_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224374
NC_005966.1\|WP_011182533.1\|2461134_2461902_+\|pyrroloquinoline-quinone-synthase-PqqC	unknown	unknown	gnl\|CDD\|235353
NC_005966.1\|WP_004928477.1\|2436830_2438210_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NC_005966.1\|WP_004928529.1\|2462170_2463331_+\|pyrroloquinoline-quinone-biosynthesis-protein-PqqE	unknown	unknown	gnl\|CDD\|235397
NC_005966.1\|WP_004928533.1\|2463327_2464374_+\|dipeptidase	unknown	unknown	gnl\|CDD\|238626

Protein	Function_ID	Function_description	E-value
NC_005966.1\|WP_004928507.1\|2454580_2458045_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.89067e-62
NC_005966.1\|WP_004928487.1\|2444462_2445347_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	4.49686e-128
NC_005966.1\|WP_004928485.1\|2443299_2444466_+\|hypothetical-protein	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.8608e-05
NC_005966.1\|WP_004928488.1\|2445376_2446438_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	3.44062e-167
NC_005966.1\|WP_011182532.1\|2460085_2460157_+\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|273976	TIGR02107, Coenzyme_PQQ_synthesis_protein_A, coenzyme PQQ precursor peptide PqqA. This model describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.26783e-07
NC_005966.1\|WP_004928481.1\|2439176_2442413_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_005966.1\|WP_004928524.1\|2461898_2462174_+\|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD	gnl\|CDD\|179362	PRK02079, PRK02079, pyrroloquinoline quinone biosynthesis peptide chaperone PqqD.	8.84691e-47
NC_005966.1\|WP_004928490.1\|2446440_2447052_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.97075e-32
NC_005966.1\|WP_004928503.1\|2453621_2454584_-\|response-regulator-transcription-factor	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.36417e-54
NC_005966.1\|WP_004928475.1\|2435552_2436629_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NC_005966.1\|WP_004928491.1\|2447063_2448017_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	2.16856e-179
NC_005966.1\|WP_004928483.1\|2442871_2443189_+\|phage-antirepressor-KilAC-domain-containing-protein	gnl\|CDD\|377029	pfam03374, ANT, Phage antirepressor protein KilAC domain. This domain was called the KilAC domain by Iyer and colleagues.	2.7669e-12
NC_005966.1\|WP_004928479.1\|2438441_2439131_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.92961e-67
NC_005966.1\|WP_004928534.1\|2464427_2465213_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|237100	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional.	4.85651e-151
NC_005966.1\|WP_004928517.1\|2460230_2461145_+\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	gnl\|CDD\|235361	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional.	0
NC_005966.1\|WP_004928514.1\|2458235_2459858_+\|hypothetical-protein	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	4.78059e-18
NC_005966.1\|WP_011182533.1\|2461134_2461902_+\|pyrroloquinoline-quinone-synthase-PqqC	gnl\|CDD\|235353	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional.	1.77464e-166
NC_005966.1\|WP_004928477.1\|2436830_2438210_+\|murein-L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	3.54333e-28
NC_005966.1\|WP_004928529.1\|2462170_2463331_+\|pyrroloquinoline-quinone-biosynthesis-protein-PqqE	gnl\|CDD\|235397	PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional.	0
NC_005966.1\|WP_004928533.1\|2463327_2464374_+\|dipeptidase	gnl\|CDD\|238626	cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.	4.92701e-100

>NC_005966.1|WP_004928491.1|2447063_2448017_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MSQLRQERSRPVMLSKRACVFYLEKVRVVLKDDRIVYLTDNSQPVEYFYNIPEKNTAFLLLGKGSSLTDAAARRLAESNVMVGFCGSGGSPLFSSLDLTFLAPQSEYRPTEYMQIWMKAWLDDDARLLMAKILLLERIVLVSQSWKKNLDLIQHGIYIDENALNTFKQDIDRSENQQELLAAEGRWAKALYKELAKGFNIDFKRDEGKNSHDSLTDIANNYLDHGNYIAYGYAAVALNGMGISFALPILHGKTRRGGLVFDLADLVKDAFVMPTAFICASKGLNQKEFRMQLIEICQDQDLLDYMFSFITDICSKIK
>NC_005966.1|WP_004928490.1|2446440_2447052_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDANYYLDIRVLESSDDTDLKLGHIRNQIYTVIHGAFRKLPAHYALALEMSDKLKAKQEQFEKKHGRSAKPNFDILRIFAEKQDELDELVEAIKGHWKIRDYTVLGVAIAVPTAKISGWKSYRKFRIPTQKAERTKLSHQNEPLRDRRLKTAKGMPFFQVISQSTGQGFTVIIDVQESENAGYGLPDSYGLARKESPFALPVF
>NC_005966.1|WP_004928488.1|2445376_2446438_+|type-I-F-CRISPR-associated-protein-Csy3
MTIFKKLPGSLSLQRGTVVSDGAFFNLFEDGKQEPLHVMYHGIRGTQNVAGNKEKGAATGNSLAREVTNIQLTESAKLQPNAKLLVKWDFRFIDLSYVLFASASKAGADKTEEYNFRQAFLNFVNRAKESDGLKEVVRRYVRNIVNGRWLWRNRIVAESITIQVTAQDYPETFSFDALSYNLKSFAEPSEQEQKLAGILLKGITGESTNAALHIEAIVDFGMGGVEVFPSQNYLEDKPKGFSRSLYQLTPKKPDHKANDNQYLGQAALRDQKIGNALRTIDTWYPSFKENDEKPIAIEPNGANLEGQIFYRVGKDKVSAFDILKEIDELDPSSEKGMFLISCLIRGGVYSEGE
>NC_005966.1|WP_004928487.1|2444462_2445347_+|type-I-F-CRISPR-associated-protein-Csy2
MSRYAVIPRIRVQNANMQSNGLLLGGVPLFAANMFAHHLARQLGTTDEGIIYIHHNQQRLGGQAYGRFTPAQRRGAVFIGKKDYSSKNKYALSLQPTASCHLEFSLVIKFSSSRISPEKLTHILKRSRFAGGQIIEFLEITTHAENELEAALKKIKTGFAILDRQDLLIEYQQRQQINRVQAFTQLLALKVDTLRAFFNDQNLSWISATNLGYALLEPLTDQRAGIRQAQDQETTAHAYAEPLTGIVQYFSLGEILRKNTEVEDDSWHNLQKLLWTYHWSQDDIFLLKQNCIHA
>NC_005966.1|WP_004928485.1|2443299_2444466_+|hypothetical-protein
MPEPQTDIFINALEESVHFSLKTINSNIEKGGIRLSNQQALDLPYLSARTLLNEDFLIPTDYQANAGKTASIFKVVKAAMISHDISEEDPDFKQQVEQLKPSISSVFNELYQSGTENIDIRMRQLLIPKNGEYVSVSPLTAAGVNYLVNQEVDAVNELRKEKDSDFNRIQTAVFGIGGANPQNVGSLVRSMQRPITVDAPQASEKVRQALAIFYNGFTIRLSRKIKLLNGTKRAKEAIKEWSEILNRQLVITATNTIQNWHDLEIFAPSTNRDVRDQEIIFLNILAKDVLRQASFQKNILEEAEAILPSMQEIERPSFWVHPSLSFVLQGLVDPELRDDHWRIKFSDYLARKITNETFDIEINNETVSISLDSNSEGYIARRLREIIR
>NC_005966.1|WP_004928483.1|2442871_2443189_+|phage-antirepressor-KilAC-domain-containing-protein
MSHLITEHVDPFSNQEKSSPDFSLSMSAKLLKLSPKVFIELLYRNKFIFKRSKQTAWESYQNIVDREILCHRVINIKHSTGIVVPHLQVRVTLKGLTYFKNRFCS
>NC_005966.1|WP_004928481.1|2439176_2442413_-|type-I-F-CRISPR-associated-helicase-Cas3
MHVIIISACEKRALKKTRAILDSYAIRTGHSSWQAPMTIEGLKEIRSALKKVATRQTAVAAYINFGMRRMKLAWVVGAKHKFAHDGAYPVASIKKQQKLLMLDEWVKASSLLAGAAGDMHDIGKASQHFQNKLSPEMAGQKIRDDIRHEWLSLKLLQQLRKNGWNWQLAWKNLDKGLDKFTLGDRQEIEQGIQNELEAVDYLVVTHHGLLGVEEALKNDPLALPHYENHVRTLVPSREQISCAGELPDSIFKSHQKRMQRLTALIPKQKTDQLLYWKALALHSRAALIHADHIVSAQQYSLQKPENVALFANTKLKNIDQDKKAKLQDQPLEWHLHQVGDRASRIAVQMMTDLSLSGLSEQTVEYICQPTTHPRFQWQNIAANALQKNIQKHPETPALVFNIAGTGSGKTRMNLRAACTLRPDDPRIAIALNLRSLTLQTGHALKTSMNLSDDEIAVIIGDTITQTLFDQSKEKIEFVDEDENRPEPIFDAWGEDCNLPDWLHPLFTIEKNGRKVLDQKETTILASPLLVSTIDYLIAAGEPHQQGHHVKALLRIMSSDLILDEVDGYEPKALIAVLRLVQLAALYGRNVICSSATLSLTVAKTIHRAFESGIQMRAALYGNEKKSIIAIIDNELKPQVWLERSNQKSEFDTRYQNHLDDLQVQLLSKPTHRLAQLLSLSETTVLSWKQSVLEGVKQLHQAHAWSFRKTEKKISLGLIRVANIKHAIRLAQFLSDHLPEAKIACYHANDWLISRFYKEQRLDQLLTRHKDGKKRKTGNEQIEQDDEMIDLMQNSDSLNVPFIVIATPVEEVGRDHDFDWAIIDASSVQSIVQTAGRVNRHRLEKVQQPNIVIPEWNYRYCERRDIEKRKQQSKQRRPVFIYPGYEGYGVSATSTYSSQRLNELLPWDHQSQLVINARLRFDQVGCLFAKLDDEQIKDFCKNYFNDQGEQLFSRSDVDASIMTENIYNITPLRERNYQETYMFEWAESLIVKKQVYGFDEKATKNLKYRKYGLVWEQVKFEEIPAKSQAWLALTPQQMKDYCYEYQIANEQGCRISLTPYNRDEVPTWSYDYGFGVFTH
>NC_005966.1|WP_004928479.1|2438441_2439131_+|pirin-family-protein
MNAYLHRSENRGHVKAGWLNTYHSFSFGSWYNPKYMGFGPLRVINDDTIAANNGFGTHPHDNMEILTYVTDGRLTHRDSMGNEEYIHAGEWQLMSAGTGVAHSEINNTDEAVHLFQIWIQPNIRDAEPTYQQIKLNPHDEPNKWHLIVGPNDNAPMFIRQNAEVKAAVLEEGKTLDIATTQKHNYVHVVKGQIMIENQIVKAGDALLFDEKTSIKALEDSEMIWFDLPA
>NC_005966.1|WP_004928477.1|2436830_2438210_+|murein-L,D-transpeptidase
MFVRSLLALSLSCIISGTVFAASTVEQPLHPKVVRSTDLIEDPIDPLAVDSSVKQKQNSTTKYKPAAPVPRNNAAASSPVASAPASSPVASQAPASSPTSSSGDASLSAQEQKDLNQASATLQNLENSEDKHADSGAAPATPATKTSAPSTTSSQSQAKVSWTLDSLNNADWYENIGRGQFPVYARAQVMLNNTHASPGAIDGTSGMNTLKAISSFQQINGLKPTGELTQETWSALVAKQNKPAYVEYTLTEDDLKGPYAPSIPHDYAQQAKMKGLYYVRVTEMLGEKFHMDEDFLKKLNPKASFKKAGEKIIVANVRNDLPEDIHLIIAHKGARQLYLFNSRNQMIASFPATIGSSDTPSPTGTYKVVGVARNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLSKKSFGIHGTPNPSAISKTASHGCIRLTNWDANDLGNKVRSGVTVKFLE
>NC_005966.1|WP_004928475.1|2435552_2436629_-|uroporphyrinogen-decarboxylase
MTALKNDRFLRALLREPVDTTPVWMMRQAGRYLPEYRETRAQAGDFLSLCKNTEFACEVTLQPLRRYDLDAAILFSDILTIPDALGLGLYFETGEGPKFKKTIRTEQDVLNLPNFNAKSDLDYVMNAVTTIHSALGGQVPLIGFSGSPWTLATYMVEGGSSKDFRYTKHMMYSQPEVLHALLDRLAVAVIDYLNAQIDAGAQAVQIFDSWGGALAHREYTEFSLNYMRKIVAGLQREKDGRRIPVILFTKGGGQWLEPMIATGADAIGLDWTTPLNVARKTVAGRVALQGNLDPAVLYGSAASIEKSVKAMLDDAYANGETTGYIANLGHGITQWVDPSQPKIFVDTVHEYSAKYLGS
>NC_005966.1|WP_004928503.1|2453621_2454584_-|response-regulator-transcription-factor
MSQDAHHTHLPISHDQAAILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFESCLQLKASPITQLIPVIFMTGLSETEHIVKGFQVGGVDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATEVAIIALDIQGEMAWQTDKATLFLNQYLQDQSGFKLGLKQWFADIKKDKDNKKRMSCTYSTSTQQLQLILLTPWQDDLSTTKNYLVQIKISSTALSIEDILKYCPQLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAYMNSLVQDQSL
>NC_005966.1|WP_004928507.1|2454580_2458045_-|response-regulator
MPNTSKPQQAPQRVIKTRREYNLWVADQSIEDFALRYAPQSVRKWSPWTVTNTAISTVSFLAMEAIGATMLWQYGFTNAMLAAIVVCCIIFVTSWPISYYAAKYNVDVDLLTRGAGFGYIGSTITSLIYASFTFILLAFEAAIMAMALELALNIPLSIGYLLSALVILPLVVKGIGFINKVQAVTQPLWLLLLLLPWFFVLWKQPHLLTDSVHFVGTISQSSGFNLYYFGAACTLIFVFIIQIGEQADYLRFLPQQEKNKTTWHLAVFLGGPSWIVAGFLKVCMGMLLMLLAFQAFVPISEIDNPTYLYWIAYQQFIPSPQIALLLTLALVCLAQIKINVTNAYAGSLAWSNFFARLTHSHPGRIVWLIFNVMIAIVLMEMGIIHAVERILGLYSNIALAWIGAVVADLIICKPLGLSPKGIEFRRAYLYDINPVGVGALFIASAVSILSYLGFLGVTAKGLASFIALGTAIFCVPVIAYVTKGKYYIARQPEQIAATHVATCVVCERDYELADMAYCPAYTHSICSLCCSLEARCHDLCKPHGRWSVQLKQWIERYLPQRWAGRLNTRLSQYILLMLSLGIILAVCLSLVYLQEKTYLETVNEQAIQQLFTLFLKIYTILFLLISVAAWWLVLNDESRRKAEQETQQQTSLLIDEIAAHEQTSQHLQDARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNKGSIYFKVGYRFQTAYFEINDTGCGIAHHDLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVVHPITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLSWISDSGQDQVQQPTQIHPSVVADQNRVMLHQPVVSYQDCPHVSPNESIEQAFVELDRLIGQGYIRGIQQALQQYQHDFPEYAELWGQLSQSVQKFDLKHARQLLQDAP
>NC_005966.1|WP_004928514.1|2458235_2459858_+|hypothetical-protein
MRVSEHSNIGTIDDSDADSRKAVDETLEDYTLRYAPHSFRRWSPKVVAITALGGIAYLADFSIGASIGMTYGTTNAIFSILFAAIIIFLTGIPLAYYAARYNIDLDLITRGAGFGYIGSVLTSIIFASFTFIFFALEGSIMAQGLLLGLGIPLWLGYMISTFMVIPLVIYGMKALSTLQVWTTPIWLILMVGPVAYLIHKEPNLVGQFATYTGAGGFAPMDMAAIMLGAGVCLSLIMQIGEQIDYLRFMPAKTKENSKQWWAAVISAGPGWVILGAIKQIIGAFLGFYLLTKIPGVNSTEPVQQFNAAFHDMLPGWLALSLAVILVVISQIKINVTNAYSGSLAWTSAYTRITKHYPGRIVFVIVNLVIALALMEGNMFAVLGKILGFYSNFAIAWVVVVATDISINKYLLKLSPKEPEYRRDMLHNINPVGLISFLAAAGLSIAAFFGLLGSFLASYSPLIALIVAFVMTPLMGILTKGKYYIKQSHDGINEPRYDAEGTPVATVYQCLVCEQDYERPDVMFSHKHNGTICSLCKTMDK
>NC_005966.1|WP_011182532.1|2460085_2460157_+|pyrroloquinoline-quinone-precursor-peptide-PqqA
MWTKPAFEDIRLGFEITMYAAVE
>NC_005966.1|WP_004928517.1|2460230_2461145_+|pyrroloquinoline-quinone-biosynthesis-protein-PqqB
MLIKILGSAAGGGFPQWNCNCENCLGLKQGTIQAKARTQSSIAISDNGKDWILCNASPDIAQQIAHNPELQAPSSIRRGTSIGSIILTDSQIDHTTGLLNLREGCPHQVWATPEVHEDLSTGFPIFNMLKHWNGGLVHHPIDIQTSFQVAVCEAIRFTPVPILSNAPPYSPYRHRPLPGHNIALWIEDTRTGHSLFYAPGLGQMDDSILSYMQRADCLLVDGTLWKDQELALLGVGKNTGQDMGHLALQEERGLIHLLSQFPKQRKVLIHINNTNPILNEDSVERATLKQLEIEVSYDGMLIEV
>NC_005966.1|WP_011182533.1|2461134_2461902_+|pyrroloquinoline-quinone-synthase-PqqC
MRFNMTTTLFSPAEFEQALRDKGRYYHIHHPYHIMMNDGHATKQQIQGWVANRFYYQVNIPLKDAAIMANCPDPATRRKWVQRILDHDGQHDDHGGIEAWLRLGEAVGLDRETILSQKMVLPSVRFAVDAYVNFARRACWQEAACSSLTELFAPAIHQSRLDTWPTHYPWIDAEGYAYFRGRLSQANRDVEHGLELALEYCNTVDRQQRMLNILQFKLDILWTILDGMSMAYVLERAPYHTVTQEAVWHQKGLLG
>NC_005966.1|WP_004928524.1|2461898_2462174_+|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD
MSDLLHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQFPDATGLDQDIVEFLKQAESRQWICLQ
>NC_005966.1|WP_004928529.1|2462170_2463331_+|pyrroloquinoline-quinone-biosynthesis-protein-PqqE
MNIPVSLQSKPPLWLLAELTYRCPLQCAYCSNPLDYAAVKQELSTDEWKDVFRQARAMGSVQLGFSGGEPLLRQDLSELIKYAHELGFYTNLITSGIGLTEQKIAEFSEAGLDHIQISFQASDPALSEILSGSRKAFQQKQAMALAVKKHRYPMVLNFVIHRFNIEQIDQIIELSLELNADYVELATCQFYGWAKLNQAALLPTPEQISYAQARVQAYRQYIDQHHLKTKLLLVAPDYYQERPKKCIGGWGQIFITVSPDGTVLPCQSAKDLPLEFPTIQDQSLKTIWNEAFAFNAFRGTDWMQEPCRSCPDKDKDLGGCRCQAYMLTKNMYATDPVCSKSPVHHQIVEARLQTQCSKPDISDLKLRNPQNSKLFFKRASDADSLL
>NC_005966.1|WP_004928533.1|2463327_2464374_+|dipeptidase
MKSFDGHNDLLARLWLSEHPDPVGMFLKGQLPGHLDFARCQQAQFAGGLFAIFVPPFDYVKNNHPYKLRKSAQAGFDTQDIHHIVFTQLDYIKQIASRSDRRIQICLSVEDIQFCLQQDIMAVVIHLEGAEVLDSEFGVLEQLHARGLRSIGPLWNLPNQFGHGLQASFPHSPDTGLGLTDQGKALIQLCSEKRIMIDVSHMNEKAFWDTAKISELPLIATHSNVHQLCPQPRNLTDAQLEAIQASQGCVGVNFDTAFLRPDGQRNAATSLDLILEHIEYLMHKLGEDQVAFGSDFDGGFISDHLKDVTGLIHLQQAFERRGYSQALQEKLCHQNWLSALQRVWHPAC
>NC_005966.1|WP_004928534.1|2464427_2465213_-|3-hydroxybutyrate-dehydrogenase
MSKQLDTKVAFITGSASGIGLEIAKKFAAEGAKVVISDVNAEKCEDAVKQLKQQGFDALAAPCDVTDEQAYQAAIELTQKHFGTVDILINNAGFQHVAAIEDFPTEVFQKLIAVMLTGAFIGIKHVFPIMKAQKSGRIINMASINGLIGFAGKAGYNSAKHGVIGLTKVAALESAKDGITVNALCPGYVDTPLVRGQIADLAKTRNVSETTALEDVILAMVPQKRLLTVEEIADYAIFLCSDKAGGVTGQAVVMDGGYTAQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NC_031020	Morganella phage vB_MmoM_MP1, complete genome	19384-19415	5	0.844
NC_005966_3	3.13\|2448863\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2448863-2448894	32	MT740244	Proteus phage 3H10_20, partial genome	35425-35456	6	0.812
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	MN693943	Marine virus AFVG_250M49, complete genome	22639-22670	6	0.812
NC_005966_3	3.29\|2449824\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449824-2449855	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	147976-148007	6	0.812
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	NZ_CP020695	Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence	169410-169441	6	0.812
NC_005966_3	3.45\|2450784\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450784-2450815	32	MT028491	Ochrobactrum phage vB_OspM_OC, complete genome	162024-162055	6	0.812
NC_005966_2	2.15\|2372669\|32\|NC_005966\|CRISPRCasFinder,CRT	2372669-2372700	32	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	17807-17838	7	0.781
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KT187252	Bacillus phage PBC6, complete genome	51592-51623	7	0.781
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	AY258454	Podovirus SOG clone SOG-WS-N DNA polymerase gene, partial cds	1056-1087	7	0.781
NC_005966_3	3.45\|2450784\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450784-2450815	32	AY266303	Bacteriophage Aeh1, complete genome	75084-75115	7	0.781
NC_005966_3	3.45\|2450784\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450784-2450815	32	NC_005260	Aeromonas phage Aeh1, complete genome	75084-75115	7	0.781
NC_005966_3	3.46\|2450844\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450844-2450875	32	NZ_CP024789	Nostoc flagelliforme CCNUN1 plasmid pNFSY04, complete sequence	79239-79270	7	0.781
NC_005966_3	3.54\|2451323\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451323-2451354	32	KY389063	Staphylococcus phage phi575, complete genome	9069-9100	7	0.781
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	NZ_CP050314	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence	206968-206999	7	0.781
NC_005966_3	3.87\|2453303\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453303-2453334	32	KX349297	Cyanophage S-RIM44 isolate W2_10_0709, complete genome	92777-92808	7	0.781
NC_005966_3	3.87\|2453303\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453303-2453334	32	KU594607	Cyanophage S-RIM44 isolate W2_07_0710, complete genome	92497-92528	7	0.781
NC_005966_3	3.87\|2453303\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453303-2453334	32	NC_015288	Prochlorococcus phage Syn1, complete genome	90696-90727	7	0.781
NC_005966_3	3.87\|2453303\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453303-2453334	32	KX349295	Cyanophage S-RIM44 isolate Sn_08_0709, complete genome	92500-92531	7	0.781
NC_005966_3	3.87\|2453303\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453303-2453334	32	KX349292	Cyanophage S-RIM44 isolate Np_05_0604, complete genome	92500-92531	7	0.781
NC_005966_1	1.1\|2339366\|32\|NC_005966\|CRISPRCasFinder,CRT	2339366-2339397	32	MT218433	Aeromonas hydrophila strain W39 plasmid pAhW39, complete sequence	2124-2155	8	0.75
NC_005966_1	1.1\|2339366\|32\|NC_005966\|CRISPRCasFinder,CRT	2339366-2339397	32	NZ_CP026410	Aeromonas sp. ASNIH2 plasmid pAER-e58e, complete sequence	2048-2079	8	0.75
NC_005966_2	2.11\|2372429\|32\|NC_005966\|CRISPRCasFinder,CRT	2372429-2372460	32	MK562505	Shigella phage Silverhawkium, complete genome	57001-57032	8	0.75
NC_005966_2	2.13\|2372549\|32\|NC_005966\|CRISPRCasFinder,CRT	2372549-2372580	32	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	48911-48942	8	0.75
NC_005966_2	2.14\|2372609\|32\|NC_005966\|CRISPRCasFinder,CRT	2372609-2372640	32	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	59489-59520	8	0.75
NC_005966_2	2.14\|2372609\|32\|NC_005966\|CRISPRCasFinder,CRT	2372609-2372640	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	24649-24680	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KJ489400	Bacillus phage Hoody T, complete genome	140322-140353	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KF669662	Bacillus phage Spock, complete genome	140579-140610	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KU737346	Bacillus phage Vinny, complete genome	141383-141414	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	NC_024207	Bacillus phage Evoli, complete genome	140238-140269	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	MF498901	Bacillus phage Anthony, complete genome	142507-142538	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KY888882	Bacillus phage Flapjack, complete genome	142333-142364	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KX987999	Bacillus phage BCP12, complete genome	20759-20790	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	JN797797	Bacillus phage BCP78, complete genome	51706-51737	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	NC_047735	Bacillus phage BCU4, complete genome	44039-44070	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	MH487649	Bacillus phage BC01, complete genome	51596-51627	8	0.75
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	KT224359	Bacillus phage TsarBomba, complete genome	133836-133867	8	0.75
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	189237-189268	8	0.75
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	194779-194810	8	0.75
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	80945-80976	8	0.75
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	MN693409	Marine virus AFVG_25M351, complete genome	26842-26873	8	0.75
NC_005966_3	3.27\|2449704\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449704-2449735	32	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	49531-49562	8	0.75
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	JX878496	Serratia phage phiMAM1, complete genome	26213-26244	8	0.75
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	MF285619	Serratia phage 2050H1, complete genome	27425-27456	8	0.75
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	JX195166	Pectobacterium phage My1, complete genome	66745-66776	8	0.75
NC_005966_3	3.43\|2450664\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450664-2450695	32	NZ_CP024790	Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence	14130-14161	8	0.75
NC_005966_3	3.43\|2450664\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450664-2450695	32	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	551134-551165	8	0.75
NC_005966_3	3.62\|2451803\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451803-2451834	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	401666-401697	8	0.75
NC_005966_3	3.86\|2453243\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453243-2453274	32	NZ_CP041164	Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence	103497-103528	8	0.75
NC_005966_1	1.2\|2339426\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2339426-2339457	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	207052-207083	9	0.719
NC_005966_2	2.14\|2372609\|32\|NC_005966\|CRISPRCasFinder,CRT	2372609-2372640	32	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	396847-396878	9	0.719
NC_005966_2	2.17\|2372785\|32\|NC_005966\|CRISPRCasFinder,CRT	2372785-2372816	32	MN150686	Bacillus phage BC-T25, complete genome	135005-135036	9	0.719
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	HQ698922	Acinetobacter phage ZZ1, complete genome	111250-111281	9	0.719
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	MK240351	Acinetobacter phage Henu6, complete genome	3505-3536	9	0.719
NC_005966_3	3.1\|2448143\|32\|NC_005966\|CRISPRCasFinder,CRT	2448143-2448174	32	MN693180	Marine virus AFVG_25M318, complete genome	2430-2461	9	0.719
NC_005966_3	3.10\|2448683\|32\|NC_005966\|CRISPRCasFinder,CRT	2448683-2448714	32	NZ_CP046059	Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence	10196-10227	9	0.719
NC_005966_3	3.10\|2448683\|32\|NC_005966\|CRISPRCasFinder,CRT	2448683-2448714	32	MT840190	Bacteriophage sp. contig_8960 genomic sequence	10198-10229	9	0.719
NC_005966_3	3.10\|2448683\|32\|NC_005966\|CRISPRCasFinder,CRT	2448683-2448714	32	LC425520	Uncultured phage DNA, contig: NODE385	16930-16961	9	0.719
NC_005966_3	3.13\|2448863\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2448863-2448894	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	27313-27344	9	0.719
NC_005966_3	3.13\|2448863\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2448863-2448894	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	376549-376580	9	0.719
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	248519-248550	9	0.719
NC_005966_3	3.17\|2449103\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449103-2449134	32	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	339787-339818	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	40012-40043	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	458530-458561	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	471636-471667	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_AP014865	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence	420215-420246	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	484858-484889	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	543318-543349	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	230107-230138	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	345881-345912	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	201003-201034	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	501490-501521	9	0.719
NC_005966_3	3.20\|2449284\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449284-2449315	32	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	100244-100275	9	0.719
NC_005966_3	3.27\|2449704\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449704-2449735	32	NZ_CP033050	Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence	200854-200885	9	0.719
NC_005966_3	3.33\|2450064\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450064-2450095	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1912641-1912672	9	0.719
NC_005966_3	3.33\|2450064\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450064-2450095	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	201224-201255	9	0.719
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	NZ_CP046625	Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence	18065-18096	9	0.719
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	KX452697	UNVERIFIED: Serratia phage KPN4 genomic sequence	9329-9360	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	MT668624	Listeria phage LP-Mix_6.2, complete genome	99670-99701	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	NC_047872	Listeria phage LMTA-94, complete genome	34380-34411	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	KJ591605	Listeria phage LMTA-57, complete genome	44148-44179	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	NC_042048	Listeria phage LMTA-34, complete genome	113541-113572	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	37821-37852	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	NC_041862	Listeria phage LP-064, complete genome	108281-108312	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	JX126918	Listeria phage LP-125, complete genome	108283-108314	9	0.719
NC_005966_3	3.36\|2450244\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450244-2450275	32	NC_024360	Listeria phage LMSP-25, complete genome	113541-113572	9	0.719
NC_005966_3	3.39\|2450424\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450424-2450455	32	NZ_AP017916	Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ2 DNA, complete sequence, phylotype ProJPt-1	10906-10937	9	0.719
NC_005966_3	3.40\|2450484\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450484-2450515	32	NZ_CP016891	Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence	120588-120619	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	AP014500	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C79, * SEQUENCING IN PROGRESS *, 2 ordered pieces	8368-8399	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	NZ_CP032362	Lactobacillus plantarum strain ZFM55 plasmid unnamed3, complete sequence	7082-7113	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	NZ_CP032362	Lactobacillus plantarum strain ZFM55 plasmid unnamed3, complete sequence	29043-29074	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	NZ_CP040739	Lactobacillus futsaii strain Y97 plasmid p3, complete sequence	7613-7644	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	NZ_CP040739	Lactobacillus futsaii strain Y97 plasmid p3, complete sequence	20405-20436	9	0.719
NC_005966_3	3.49\|2451023\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451023-2451054	32	NZ_CP032647	Lactobacillus plantarum strain ZFM9 plasmid unnamed5, complete sequence	3883-3914	9	0.719
NC_005966_3	3.50\|2451083\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451083-2451114	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	785461-785492	9	0.719
NC_005966_3	3.58\|2451563\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451563-2451594	32	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	136563-136594	9	0.719
NC_005966_3	3.58\|2451563\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451563-2451594	32	AP014110	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S36-C65, * SEQUENCING IN PROGRESS *	29401-29432	9	0.719
NC_005966_3	3.68\|2452163\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452163-2452194	32	MH590597	Streptomyces phage LukeCage, complete genome	8373-8404	9	0.719
NC_005966_3	3.68\|2452163\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452163-2452194	32	MH590597	Streptomyces phage LukeCage, complete genome	129277-129308	9	0.719
NC_005966_3	3.69\|2452223\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452223-2452254	32	JX181825	Salmonella phage STML-198, complete genome	105123-105154	9	0.719
NC_005966_3	3.69\|2452223\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452223-2452254	32	NC_042044	Salmonella phage Melville, complete genome	65017-65048	9	0.719
NC_005966_3	3.72\|2452403\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452403-2452434	32	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	297283-297314	9	0.719
NC_005966_3	3.72\|2452403\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452403-2452434	32	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	297285-297316	9	0.719
NC_005966_3	3.72\|2452403\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452403-2452434	32	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	166816-166847	9	0.719
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	MG592519	Vibrio phage 1.150.O._10N.222.46.A6, partial genome	27119-27150	9	0.719
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	MG592409	Vibrio phage 1.025.O._10N.222.46.B6, partial genome	27177-27208	9	0.719
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	MG592668	Vibrio phage 2.130.O._10N.222.46.C2, partial genome	27257-27288	9	0.719
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	MG592521	Vibrio phage 1.152.O._10N.222.46.E1, partial genome	27254-27285	9	0.719
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	MG592410	Vibrio phage 1.026.O._10N.222.49.C7, partial genome	27256-27287	9	0.719
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	NZ_CP014351	Borrelia hermsii HS1 isolate Browne Mountain plasmid cp28, complete sequence	24943-24974	9	0.719
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	MH051335	Escherichia phage vB_EcoM-Ro157lw, complete genome	30413-30444	9	0.719
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	MK903282	Escherichia phage Mansfield, complete genome	30620-30651	9	0.719
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	MT446408	UNVERIFIED: Escherichia virus TH35, complete genome	25356-25387	9	0.719
NC_005966_3	3.75\|2452583\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452583-2452614	32	NC_048073	Escherichia phage FEC19, complete genome	39931-39962	9	0.719
NC_005966_3	3.76\|2452643\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452643-2452674	32	MT932329	Campylobacter phage F379, complete genome	730-761	9	0.719
NC_005966_3	3.79\|2452823\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452823-2452854	32	MK559459	Vibrio phage vB_VcaS_HC, complete genome	31604-31635	9	0.719
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	MG592519	Vibrio phage 1.150.O._10N.222.46.A6, partial genome	27119-27150	9	0.719
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	MG592409	Vibrio phage 1.025.O._10N.222.46.B6, partial genome	27177-27208	9	0.719
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	MG592668	Vibrio phage 2.130.O._10N.222.46.C2, partial genome	27257-27288	9	0.719
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	MG592521	Vibrio phage 1.152.O._10N.222.46.E1, partial genome	27254-27285	9	0.719
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	MG592410	Vibrio phage 1.026.O._10N.222.49.C7, partial genome	27256-27287	9	0.719
NC_005966_2	2.13\|2372549\|32\|NC_005966\|CRISPRCasFinder,CRT	2372549-2372580	32	MK448934	Streptococcus phage Javan422, complete genome	39801-39832	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	AP013722	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22B-MedDCM-OCT-S29-C187, * SEQUENCING IN PROGRESS *	1055-1086	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	AP013714	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S35-C152, * SEQUENCING IN PROGRESS *	6758-6789	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	AP013723	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22B-MedDCM-OCT-S31-C210, * SEQUENCING IN PROGRESS *	5317-5348	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_010158	Yersinia pestis Angola plasmid pMT-pPCP, complete sequence	91845-91876	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_005815	Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete sequence	72078-72109	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009490	Yersinia pestis strain PBM19 plasmid pMT1, complete sequence	76415-76446	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009714	Yersinia pestis Pestoides F plasmid pMT, complete sequence	63477-63508	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009702	Yersinia pestis strain Harbin35 plasmid unnamed1, complete sequence	90764-90795	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009784	Yersinia pestis strain El Dorado plasmid pMT, complete sequence	925-956	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009722	Yersinia pestis strain Shasta plasmid pMT, complete sequence	42823-42854	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045259	Yersinia pestis strain SCPM-O-B-5942 (I-2638) plasmid pMT, complete sequence	19263-19294	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_014022	Yersinia pestis Z176003 plasmid pMT1, complete sequence	65750-65781	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_017266	Yersinia pestis biovar Medievalis str. Harbin 35 plasmid pMT, complete sequence	64116-64147	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP033694	Yersinia pestis strain FDAARGOS_602 plasmid unnamed1, complete sequence	36079-36110	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_009378	Yersinia pestis Pestoides F plasmid MT, complete sequence	71186-71217	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP033700	Yersinia pestis strain FDAARGOS_601 plasmid unnamed3	21751-21782	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP033700	Yersinia pestis strain FDAARGOS_601 plasmid unnamed3	118204-118235	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_006323	Yersinia pestis plasmid pG8786, complete sequence	69266-69297	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045146	Yersinia pestis strain SCPM-O-B-6899 (231) plasmid pMT, complete sequence	19258-19289	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045164	Yersinia pestis strain SCPM-O-B-6291 (C-25) plasmid pMT, complete sequence	19264-19295	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045155	Yersinia pestis strain SCPM-O-B-5935 (I-1996) plasmid pMT, complete sequence	19263-19294	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045159	Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 plasmid pMT, complete sequence	19974-20005	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006746	Yersinia pestis 8787 plasmid pMT1, complete sequence	117299-117330	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_003134	Yersinia pestis CO92 plasmid pMT1, complete sequence	87692-87723	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP045150	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) plasmid pMT, complete sequence	19263-19294	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006790	Yersinia pestis 2944 plasmid pMT, complete sequence	83242-83273	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006749	Yersinia pestis 3770 plasmid pMT1, complete sequence	113191-113222	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006756	Yersinia pestis 1522 plasmid pMT, complete sequence	19689-19720	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_017155	Yersinia pestis D106004 plasmid pMT1, complete sequence	65748-65779	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_017158	Yersinia pestis D182038 plasmid pMT1, complete sequence	67544-67575	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_004835	Yersinia pestis strain KIM5 plasmid pMT1, complete sequence	65815-65846	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_004838	Yersinia pestis KIM10+ plasmid pMT-1, complete sequence	83476-83507	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP033692	Yersinia pestis strain FDAARGOS_603 plasmid unnamed3, complete sequence	84642-84673	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP033693	Yersinia pestis strain FDAARGOS_603 plasmid unnamed4	39733-39764	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006760	Yersinia pestis 1413 plasmid pMT, complete sequence	117299-117330	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006779	Yersinia pestis 1412 plasmid pMT, complete sequence	72187-72218	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP006752	Yersinia pestis 3067 plasmid pMT1, complete sequence	136104-136135	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NC_008118	Yersinia pestis Nepal516 plasmid pMT, complete sequence	65748-65779	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP016275	Yersinia pestis strain Cadman plasmid pMT1, complete sequence	90583-90614	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP019709	Yersinia pestis strain 195/P plasmid pMT1, complete sequence	498-529	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009904	Yersinia pestis Antiqua plasmid pMT, complete sequence	12705-12736	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009841	Yersinia pestis A1122 plasmid pMT, complete sequence	29049-29080	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009989	Yersinia pestis strain Nicholisk 41 plasmid 1, complete sequence	79491-79522	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009934	Yersinia pestis Angola plasmid pMT, complete sequence	31786-31817	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP009843	Yersinia pestis strain Dodson plasmid pMT, complete sequence	27961-27992	10	0.688
NC_005966_2	2.21\|2373026\|32\|NC_005966\|CRISPRCasFinder,CRT	2373026-2373057	32	NZ_CP010021	Yersinia pestis str. Pestoides B plasmid pMT, complete sequence	60729-60760	10	0.688
NC_005966_3	3.2\|2448203\|32\|NC_005966\|CRISPRCasFinder,CRT	2448203-2448234	32	MN698247	Pelagibacter phage HTVC115P, complete genome	36972-37003	10	0.688
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	NZ_CP007647	Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence	19810-19841	10	0.688
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	79735-79766	10	0.688
NC_005966_3	3.16\|2449043\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449043-2449074	32	MH321490	Staphylococcus phage Quidividi, complete genome	101422-101453	10	0.688
NC_005966_3	3.25\|2449584\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449584-2449615	32	JN700521	Staphylococcus phage StB20, complete genome	9093-9124	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	NZ_LR594676	Variovorax sp. PBS-H4 plasmid 2	5572-5603	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	AP013413	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S28-C15	1667-1698	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	AP013671	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S33-C18, * SEQUENCING IN PROGRESS *	34451-34482	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	AP013414	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S29-C21	33297-33328	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	AP013672	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S38-C24, * SEQUENCING IN PROGRESS *	28170-28201	10	0.688
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	AP013415	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S37-C22	30561-30592	10	0.688
NC_005966_3	3.30\|2449884\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449884-2449915	32	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	364269-364300	10	0.688
NC_005966_3	3.34\|2450124\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450124-2450155	32	NC_003905	Proteus vulgaris plasmid Rts1 DNA, complete sequence	123429-123460	10	0.688
NC_005966_3	3.35\|2450184\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450184-2450215	32	MK496757	Capybara microvirus Cap1_SP_263, complete genome	2151-2182	10	0.688
NC_005966_3	3.41\|2450544\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450544-2450575	32	NZ_CP045411	Roseovarius sp. THAF8 plasmid pTHAF8_a, complete sequence	97993-98024	10	0.688
NC_005966_3	3.41\|2450544\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450544-2450575	32	NZ_CP045394	Roseovarius sp. THAF27 plasmid pTHAF27_a, complete sequence	99280-99311	10	0.688
NC_005966_3	3.41\|2450544\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2450544-2450575	32	NZ_CP045405	Roseovarius sp. THAF9 plasmid pTHAF9_a, complete sequence	93683-93714	10	0.688
NC_005966_3	3.53\|2451263\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451263-2451294	32	MF668280	Mycobacterium phage Phabba, complete genome	152502-152533	10	0.688
NC_005966_3	3.59\|2451623\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2451623-2451654	32	NZ_CP046708	Nostoc sp. ATCC 53789 plasmid pNsp_e, complete sequence	43514-43545	10	0.688
NC_005966_3	3.70\|2452283\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452283-2452314	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	901322-901353	10	0.688
NC_005966_3	3.74\|2452523\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452523-2452554	32	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	33488-33519	10	0.688
NC_005966_3	3.79\|2452823\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2452823-2452854	32	NC_048687	Pseudomonas phage PMBT14, complete genome	46670-46701	10	0.688
NC_005966_3	3.82\|2453003\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2453003-2453034	32	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	33488-33519	10	0.688
NC_005966_3	3.1\|2448143\|32\|NC_005966\|CRISPRCasFinder,CRT	2448143-2448174	32	MN694092	Marine virus AFVG_250M12, complete genome	14122-14153	11	0.656
NC_005966_3	3.25\|2449584\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449584-2449615	32	NZ_CP025798	Vibrio owensii strain 051011B plasmid unnamed1	71140-71171	11	0.656
NC_005966_3	3.28\|2449764\|32\|NC_005966\|CRISPRCasFinder,CRT,PILER-CR	2449764-2449795	32	MG945720	UNVERIFIED: Microviridae sp. isolate 2084-1801, complete genome	4202-4233	11	0.656

1. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_031020 (Morganella phage vB_MmoM_MP1, complete genome) position: , mismatch: 5, identity: 0.844

aatcatcaatatctttttgcgctt-tgcgtgaa	CRISPR spacer
aatcatcaatgtctttttgcacttcttcgtca-	Protospacer
**********.*********.*** * *** *

2. spacer 3.13|2448863|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MT740244 (Proteus phage 3H10_20, partial genome) position: , mismatch: 6, identity: 0.812

-gacataggaacgatatgaagatgatttttttt	CRISPR spacer
ttatattgg-acaatatgaagatgatttatttt	Protospacer
  *.** ** **.*************** ****

3. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MN693943 (Marine virus AFVG_250M49, complete genome) position: , mismatch: 6, identity: 0.812

aatcatcaatatctttttgcgctt-tgcgtgaa	CRISPR spacer
aatcatcaatagctttttgggcttccgcttgg-	Protospacer
*********** ******* **** .** **.

4. spacer 3.29|2449824|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.812

-atgtactataagtcacatggtaaagacacgaa--	CRISPR spacer
cata-actataagtcacttggtaa--acaccaact	Protospacer
 **. ************ ******  **** **

5. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020695 (Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence) position: , mismatch: 6, identity: 0.812

cgttggtactgttgcaggtggtg--cattgggga	CRISPR spacer
cgtttgtgctgttgcaggtggtggcgattgcg--	Protospacer
**** **.***************   **** *

6. spacer 3.45|2450784|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 6, identity: 0.812

ctcatcgaaacatacattgagaaa--aatcattt	CRISPR spacer
atcatcgaaacaaacatggagaaatgcatcat--	Protospacer
 *********** **** ******   *****

7. spacer 2.15|2372669|32|NC_005966|CRISPRCasFinder,CRT matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 7, identity: 0.781

aatgagaaaatcaaaccacccatgatgatcgt	CRISPR spacer
aactggaacaacaaaccacccatgatgacagt	Protospacer
**. .*** * *****************. **

8. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KT187252 (Bacillus phage PBC6, complete genome) position: , mismatch: 7, identity: 0.781

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cggatacttaaatgacaatacacaggacttag	Protospacer
.*.*****.*********** ******.  **

9. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AY258454 (Podovirus SOG clone SOG-WS-N DNA polymerase gene, partial cds) position: , mismatch: 7, identity: 0.781

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
gataggtagtgttgcaggtggtggattgaaga	Protospacer
 .* **** ************** ****..**

10. spacer 3.45|2450784|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AY266303 (Bacteriophage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

ctcatcgaaacatacattgagaaaaatcattt	CRISPR spacer
cacatcgaaacacaaattgagaaaaatatcat	Protospacer
* **********.* ************  . *

11. spacer 3.45|2450784|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_005260 (Aeromonas phage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

ctcatcgaaacatacattgagaaaaatcattt	CRISPR spacer
cacatcgaaacacaaattgagaaaaatatcat	Protospacer
* **********.* ************  . *

12. spacer 3.46|2450844|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024789 (Nostoc flagelliforme CCNUN1 plasmid pNFSY04, complete sequence) position: , mismatch: 7, identity: 0.781

aatcatcatcgaccgcagtattgaagcgaagc	CRISPR spacer
aatcatcatcgaccgcactatagaaacaactg	Protospacer
***************** *** ***.*.*

13. spacer 3.54|2451323|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KY389063 (Staphylococcus phage phi575, complete genome) position: , mismatch: 7, identity: 0.781

aagagcaaaaggtaacttggatctaccgccac	CRISPR spacer
agaagcaaaaggtaacttggaactaccgaacg	Protospacer
*..****************** ******

14. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050314 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence) position: , mismatch: 7, identity: 0.781

tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
tgacactgcaaacatctataaagatgcaacag	Protospacer
**  * * ***** *** *************

15. spacer 3.87|2453303|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 7, identity: 0.781

tgatggtgcaggaaccacagcaacatcagtca	CRISPR spacer
tactggagcaggaacgacagcaacatctggaa	Protospacer
*. *** ******** *********** *  *

16. spacer 3.87|2453303|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 7, identity: 0.781

tgatggtgcaggaaccacagcaacatcagtca	CRISPR spacer
tactggagcaggaacgacagcaacatctggaa	Protospacer
*. *** ******** *********** *  *

17. spacer 3.87|2453303|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 7, identity: 0.781

tgatggtgcaggaaccacagcaacatcagtca	CRISPR spacer
tactggagcaggaacgacagcaacatctggaa	Protospacer
*. *** ******** *********** *  *

18. spacer 3.87|2453303|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 7, identity: 0.781

tgatggtgcaggaaccacagcaacatcagtca	CRISPR spacer
tactggagcaggaacgacagcaacatctggaa	Protospacer
*. *** ******** *********** *  *

19. spacer 3.87|2453303|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 7, identity: 0.781

tgatggtgcaggaaccacagcaacatcagtca	CRISPR spacer
tactggagcaggaacgacagcaacatctggaa	Protospacer
*. *** ******** *********** *  *

20. spacer 1.1|2339366|32|NC_005966|CRISPRCasFinder,CRT matches to MT218433 (Aeromonas hydrophila strain W39 plasmid pAhW39, complete sequence) position: , mismatch: 8, identity: 0.75

tggatgcgatttataagcttcaa---gaagcaaga	CRISPR spacer
tggatgcgcttgataagcttcaatccaaaccg---	Protospacer
******** ** ***********   .** *.

21. spacer 1.1|2339366|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP026410 (Aeromonas sp. ASNIH2 plasmid pAER-e58e, complete sequence) position: , mismatch: 8, identity: 0.75

tggatgcgatttataagcttcaa---gaagcaaga	CRISPR spacer
tggatgcgcttgataagcttcaatccaaaccg---	Protospacer
******** ** ***********   .** *.

22. spacer 2.11|2372429|32|NC_005966|CRISPRCasFinder,CRT matches to MK562505 (Shigella phage Silverhawkium, complete genome) position: , mismatch: 8, identity: 0.75

ttccaccaatcaagagtggattggtcaatagt	CRISPR spacer
taccacttatcaagagtggattggtttctgat	Protospacer
* ****. *****************.  *..*

23. spacer 2.13|2372549|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 8, identity: 0.75

cgtagactgccaccaccgcacccccatacatt	CRISPR spacer
cgtgttctgccaccaccgcaatcccataccca	Protospacer
***.  ************** .******* .

24. spacer 2.14|2372609|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 8, identity: 0.75

tcgcgcaatccatcgcgaggg---gcctattcgag	CRISPR spacer
ccgcgcaatccattgcgcggggccgcccatgc---	Protospacer
.************.*** ***   ***.** *

25. spacer 2.14|2372609|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 8, identity: 0.75

tcgcgca-atccatcgcgaggggcctattcgag	CRISPR spacer
-gatgaacatccatctggaggggcctattcggg	Protospacer
  ..* * *******  **************.*

26. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KJ489400 (Bacillus phage Hoody T, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

27. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KF669662 (Bacillus phage Spock, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

28. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KU737346 (Bacillus phage Vinny, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

29. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to NC_024207 (Bacillus phage Evoli, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

30. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to MF498901 (Bacillus phage Anthony, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

31. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KY888882 (Bacillus phage Flapjack, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagttacttaaatgacaatacacaggatttag	Protospacer
... ****.*********** *******  **

32. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KX987999 (Bacillus phage BCP12, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cgggtacttaaatgacaatacacaggacttag	Protospacer
.*..****.*********** ******.  **

33. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to JN797797 (Bacillus phage BCP78, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cgggtacttaaatgacaatacacaggacttag	Protospacer
.*..****.*********** ******.  **

34. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to NC_047735 (Bacillus phage BCU4, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cgggtacttaaatgacaatacacaggacttag	Protospacer
.*..****.*********** ******.  **

35. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to MH487649 (Bacillus phage BC01, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cgggtacttaaatgacaatacacaggacttag	Protospacer
.*..****.*********** ******.  **

36. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to KT224359 (Bacillus phage TsarBomba, complete genome) position: , mismatch: 8, identity: 0.75

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cgggtacttaaatgacaatacacaggacttag	Protospacer
.*..****.*********** ******.  **

37. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 8, identity: 0.75

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tatcatcaatatctttttgtactttatctaat	Protospacer
 ******************..****.. *.*

38. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 8, identity: 0.75

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tatcatcaatatctttttgtactttatctaat	Protospacer
 ******************..****.. *.*

39. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 8, identity: 0.75

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tatcatcaatatctttttgtactttatctaat	Protospacer
 ******************..****.. *.*

40. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MN693409 (Marine virus AFVG_25M351, complete genome) position: , mismatch: 8, identity: 0.75

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tatcatcaatagctttttgcactttttcttga	Protospacer
 ********** ********.**** . * .*

41. spacer 3.27|2449704|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatgctttaaaaaatccttt-----cgcgggta	CRISPR spacer
taatcatgctttaaaaactcctttaaatgcgc-----	Protospacer
 ***.************ ******     ***

42. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to JX878496 (Serratia phage phiMAM1, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
tactggtactgctgcaggtggtgcatcgacca	Protospacer
...********.**************.*.  *

43. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MF285619 (Serratia phage 2050H1, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
tactggtactgctgcaggtggtgcatcgacca	Protospacer
...********.**************.*.  *

44. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to JX195166 (Pectobacterium phage My1, complete genome) position: , mismatch: 8, identity: 0.75

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
tgctgctgctgttgcaggtggtgcattcagtc	Protospacer
.*.** *.******************* .*

45. spacer 3.43|2450664|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024790 (Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence) position: , mismatch: 8, identity: 0.75

agaagatttggtgggcaaaaatatggaatata	CRISPR spacer
tgaagatttgttggggaaaaatatacaaccaa	Protospacer
 ********* **** ********. **.  *

46. spacer 3.43|2450664|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.75

agaagatttggtgggcaaaaatatggaatata	CRISPR spacer
tgaagatttgttggggaaaaatatacaaccaa	Protospacer
 ********* **** ********. **.  *

47. spacer 3.62|2451803|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

aagcgttgcgagcgctcaaaaagtggctgatc	CRISPR spacer
cggaaatccgcgcgctcgaaaagtggctgatc	Protospacer
 .* . * ** ******.**************

48. spacer 3.86|2453243|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041164 (Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

atgcacctgatcctgcccaatgagggatttac	CRISPR spacer
gtgaacctgatcctgcacaatgaggatttcca	Protospacer
.** ************ ********. **.

49. spacer 1.2|2339426|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cagaaacggcgggtacacgtgtcacggtgaat	CRISPR spacer
ttgcgctggcgggtgcacgtgtcgcggtgatt	Protospacer
. * . .*******.********.****** *

50. spacer 2.14|2372609|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 9, identity: 0.719

tcgcgcaatccatcgcgaggggcctattcgag	CRISPR spacer
ccgcgaaatccatcgcgaagggccgtctcagc	Protospacer
.**** ************.*****  .**..

51. spacer 2.17|2372785|32|NC_005966|CRISPRCasFinder,CRT matches to MN150686 (Bacillus phage BC-T25, complete genome) position: , mismatch: 9, identity: 0.719

tgaatactcaaatgacaataaacaggataaag	CRISPR spacer
cagctacttaaatgacaatacacaggacttag	Protospacer
... ****.*********** ******.  **

52. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to HQ698922 (Acinetobacter phage ZZ1, complete genome) position: , mismatch: 9, identity: 0.719

accagaaatgattccagatattccagatgaat	CRISPR spacer
accagaaatgattgaagatattcttgctactc	Protospacer
*************  ********. * *.  .

53. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to MK240351 (Acinetobacter phage Henu6, complete genome) position: , mismatch: 9, identity: 0.719

accagaaatgattccagatattccagatgaat	CRISPR spacer
accagaaatgattgaagatattcttgctactc	Protospacer
*************  ********. * *.  .

54. spacer 3.1|2448143|32|NC_005966|CRISPRCasFinder,CRT matches to MN693180 (Marine virus AFVG_25M318, complete genome) position: , mismatch: 9, identity: 0.719

gacaccaaaggtaataaagctatgaaagaata	CRISPR spacer
tatggcaaagataataaaggtatgaaagtttt	Protospacer
 *.. *****.******** ********  *

55. spacer 3.10|2448683|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP046059 (Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atttgccgctttgaatatttgatgcacctgct	CRISPR spacer
atttgccgctttgattattggattaaaatcta	Protospacer
************** **** ***  *  * .

56. spacer 3.10|2448683|32|NC_005966|CRISPRCasFinder,CRT matches to MT840190 (Bacteriophage sp. contig_8960 genomic sequence) position: , mismatch: 9, identity: 0.719

atttgccgctttgaatatttgatgcacctgct	CRISPR spacer
atttgccgctttgattattggattaaaatcta	Protospacer
************** **** ***  *  * .

57. spacer 3.10|2448683|32|NC_005966|CRISPRCasFinder,CRT matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 9, identity: 0.719

atttgccgctttgaatatttgatgcacctgct	CRISPR spacer
atttgccgctttgattattggattaaaatcta	Protospacer
************** **** ***  *  * .

58. spacer 3.13|2448863|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gacataggaacgatatgaagatgatttttttt	CRISPR spacer
ccgctatgaacgataagaagatgatttccatt	Protospacer
    ** ******** ***********.. **

59. spacer 3.13|2448863|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 9, identity: 0.719

gacataggaacgatatgaagatgatttttttt	CRISPR spacer
ccgctatgaacgataagaagatgatttccatt	Protospacer
    ** ******** ***********.. **

60. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 9, identity: 0.719

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
ttttttcaagatcttgttgcgctttgcgggcg	Protospacer
  *. **** ***** ************ * .

61. spacer 3.17|2449103|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tctcacgtacaaaaaaaaatcctatttgatgt	CRISPR spacer
atacaagtacaataaaaaatcctatttatatt	Protospacer
 . ** ****** **************.   *

62. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

63. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

64. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

65. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014865 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

66. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcgaactacatacagttact	Protospacer
..*   .******* **** ***********.

67. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

68. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

69. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

70. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

71. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

72. spacer 3.20|2449284|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagtgtagccaacttcatacagttacc	CRISPR spacer
ggatttggtgtagcaaactacatacagttact	Protospacer
..*   .******* **** ***********.

73. spacer 3.27|2449704|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gaattatgctttaaaaaatcctttcgcgggta	CRISPR spacer
gaattattgtttaaaaaatccttttcgtcaga	Protospacer
*******  ***************.    . *

74. spacer 3.33|2450064|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

gcggtagctggcgcggtgtttgcgttttttgg	CRISPR spacer
tggaccattggcgcggtgtttgcgtttgtcgg	Protospacer
  *.. ..******************* *.**

75. spacer 3.33|2450064|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gcggtagctggcgcggtgtttgcgttttttgg	CRISPR spacer
tggacgattggcgcggtgtttgcgtttgtcgg	Protospacer
  *.....******************* *.**

76. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046625 (Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence) position: , mismatch: 9, identity: 0.719

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
acttggtactgtttcaggtggttcacaaaaga	Protospacer
  *********** ******** **. ...**

77. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KX452697 (UNVERIFIED: Serratia phage KPN4 genomic sequence) position: , mismatch: 9, identity: 0.719

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
tactggtactgctgcaggcggtgcatcgacca	Protospacer
...********.******.*******.*.  *

78. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

79. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagatagcatagaag	Protospacer
   * .***** ********* *******. *

80. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

81. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

82. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

83. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

84. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

85. spacer 3.36|2450244|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 9, identity: 0.719

gactccgctacttaagaaagagagcataggtg	CRISPR spacer
ttatatgctacgtaagaaagacagcatagaag	Protospacer
   * .***** ********* *******. *

86. spacer 3.39|2450424|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017916 (Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ2 DNA, complete sequence, phylotype ProJPt-1) position: , mismatch: 9, identity: 0.719

tatactccttatatgtaatttacgcgtaaacc	CRISPR spacer
tatactccatatatgtaatgtacatatatctt	Protospacer
******** ********** ***...**  ..

87. spacer 3.40|2450484|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cactacatttatacccgccgtttacgctctta	CRISPR spacer
cactacatcaatacccgccgtttcggggagca	Protospacer
********. *************  *    .*

88. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP014500 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C79, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
tctgatatagaatttttaacttttttaactgc	Protospacer
  . ********** ********* *** *.

89. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032362 (Lactobacillus plantarum strain ZFM55 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
acaggtgacgaattgttaaattttgttaataa	Protospacer
*   .*.  ********** ****** *****

90. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032362 (Lactobacillus plantarum strain ZFM55 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
acaggtgacgaattgttaaattttgttaataa	Protospacer
*   .*.  ********** ****** *****

91. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040739 (Lactobacillus futsaii strain Y97 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
acaggtgacgaattgttaaattttgttaataa	Protospacer
*   .*.  ********** ****** *****

92. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040739 (Lactobacillus futsaii strain Y97 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
acaggtgacgaattgttaaattttgttaataa	Protospacer
*   .*.  ********** ****** *****

93. spacer 3.49|2451023|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032647 (Lactobacillus plantarum strain ZFM9 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

aaccatatagaattgttaacttttgtaaataa	CRISPR spacer
acaggtgacgaattgttaaattttgttaataa	Protospacer
*   .*.  ********** ****** *****

94. spacer 3.50|2451083|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gatcaaaacaacaagcgtaccaatgatgccga	CRISPR spacer
tatcagaacaacaagcgtatcaatcaatcaac	Protospacer
 ****.*************.**** *  * .

95. spacer 3.58|2451563|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 9, identity: 0.719

aagagacaacagggcttattaaagtaacttgt	CRISPR spacer
cggcaacaacagggctgattaaagtcactatc	Protospacer
 .* .*********** ******** ***  .

96. spacer 3.58|2451563|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP014110 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S36-C65, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

aagagacaacagggcttattaaagtaacttgt	CRISPR spacer
cgtaattaacaaggcttattagagtaactttt	Protospacer
 . *. .****.*********.******** *

97. spacer 3.68|2452163|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MH590597 (Streptomyces phage LukeCage, complete genome) position: , mismatch: 9, identity: 0.719

aaagccgagcccaacttttgacgcacaaaaag	CRISPR spacer
aaagctgagcccaactgttgacgactacgacc	Protospacer
*****.********** ******  .* .*

98. spacer 3.68|2452163|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MH590597 (Streptomyces phage LukeCage, complete genome) position: , mismatch: 9, identity: 0.719

aaagccgagcccaacttttgacgcacaaaaag	CRISPR spacer
aaagctgagcccaactgttgacgactacgacc	Protospacer
*****.********** ******  .* .*

99. spacer 3.69|2452223|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to JX181825 (Salmonella phage STML-198, complete genome) position: , mismatch: 9, identity: 0.719

gtcagtgattgctttcattgccgtagctacgt	CRISPR spacer
aactatgagtgctttcattgccgtagctgttc	Protospacer
. * .*** *******************.. .

100. spacer 3.69|2452223|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_042044 (Salmonella phage Melville, complete genome) position: , mismatch: 9, identity: 0.719

gtcagtgattgctttcattgccgtagctacgt	CRISPR spacer
aactatgagtgctttcattgccgtagctgttc	Protospacer
. * .*** *******************.. .

101. spacer 3.72|2452403|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 9, identity: 0.719

tggatctctgcagaaatcacattgtccaaata	CRISPR spacer
tcacgcgctgcggcaatcacattgtccaaacc	Protospacer
* .  * ****.* ****************.

102. spacer 3.72|2452403|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 9, identity: 0.719

tggatctctgcagaaatcacattgtccaaata	CRISPR spacer
tcacgcgctgcggcaatcacattgtccaaacc	Protospacer
* .  * ****.* ****************.

103. spacer 3.72|2452403|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

tggatctctgcagaaatcacattgtccaaata	CRISPR spacer
tcacgcgctgcggcaatcacattgtccaaacc	Protospacer
* .  * ****.* ****************.

104. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592519 (Vibrio phage 1.150.O._10N.222.46.A6, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

105. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592409 (Vibrio phage 1.025.O._10N.222.46.B6, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

106. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592668 (Vibrio phage 2.130.O._10N.222.46.C2, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

107. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592521 (Vibrio phage 1.152.O._10N.222.46.E1, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

108. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592410 (Vibrio phage 1.026.O._10N.222.49.C7, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

109. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014351 (Borrelia hermsii HS1 isolate Browne Mountain plasmid cp28, complete sequence) position: , mismatch: 9, identity: 0.719

tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
aacaagtttaaacttcttaaaagatgctttag	Protospacer
 .*.****.********* ********  .*

110. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MH051335 (Escherichia phage vB_EcoM-Ro157lw, complete genome) position: , mismatch: 9, identity: 0.719

---tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
gtattc---ttccaactcctttaaagatgcaaggc	Protospacer
   * *   *** ****.************** ..

111. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MK903282 (Escherichia phage Mansfield, complete genome) position: , mismatch: 9, identity: 0.719

---tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
gtattc---ttccaactcctttaaagatgcaaggc	Protospacer
   * *   *** ****.************** ..

112. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MT446408 (UNVERIFIED: Escherichia virus TH35, complete genome) position: , mismatch: 9, identity: 0.719

---tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
gtattc---ttccaactcctttaaagatgcaaggc	Protospacer
   * *   *** ****.************** ..

113. spacer 3.75|2452583|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_048073 (Escherichia phage FEC19, complete genome) position: , mismatch: 9, identity: 0.719

---tgcgagttcaaacttctttaaagatgcaacat	CRISPR spacer
gtattc---ttccaactcctttaaagatgcaaggc	Protospacer
   * *   *** ****.************** ..

114. spacer 3.76|2452643|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 9, identity: 0.719

cgtggaatcataatcataagcttcaccgacac	CRISPR spacer
atcaaacacataatcattagattcaccgacac	Protospacer
  ...*  ********* ** ***********

115. spacer 3.79|2452823|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MK559459 (Vibrio phage vB_VcaS_HC, complete genome) position: , mismatch: 9, identity: 0.719

cttactttcgcttgcgcttcgttacgaatgcc	CRISPR spacer
gttaattccgcttgcgcttcgttagctctgtt	Protospacer
 *** **.****************    **..

116. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592519 (Vibrio phage 1.150.O._10N.222.46.A6, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

117. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592409 (Vibrio phage 1.025.O._10N.222.46.B6, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

118. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592668 (Vibrio phage 2.130.O._10N.222.46.C2, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

119. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592521 (Vibrio phage 1.152.O._10N.222.46.E1, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

120. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG592410 (Vibrio phage 1.026.O._10N.222.49.C7, partial genome) position: , mismatch: 9, identity: 0.719

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
caggtaatcttgatgcgtacaacaaacttgct	Protospacer
 **   ..********.********* ****.

121. spacer 2.13|2372549|32|NC_005966|CRISPRCasFinder,CRT matches to MK448934 (Streptococcus phage Javan422, complete genome) position: , mismatch: 10, identity: 0.688

cgtagactgccaccaccgcacccccatacatt	CRISPR spacer
ccataactgccaccacagcacccacatatcac	Protospacer
*   .*********** ****** ****.  .

122. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to AP013722 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22B-MedDCM-OCT-S29-C187, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
taataaaatgattacagattttccagatgcta	Protospacer
    .******** ***** *********

123. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to AP013714 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S35-C152, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
taataaaatgattacagattttccagatgcta	Protospacer
    .******** ***** *********

124. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to AP013723 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22B-MedDCM-OCT-S31-C210, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
taataaaatgattacagattttccagatgcta	Protospacer
    .******** ***** *********

125. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_010158 (Yersinia pestis Angola plasmid pMT-pPCP, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

126. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_005815 (Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

127. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009490 (Yersinia pestis strain PBM19 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

128. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009714 (Yersinia pestis Pestoides F plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

129. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009702 (Yersinia pestis strain Harbin35 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

130. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009784 (Yersinia pestis strain El Dorado plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

131. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009722 (Yersinia pestis strain Shasta plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

132. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045259 (Yersinia pestis strain SCPM-O-B-5942 (I-2638) plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

133. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_014022 (Yersinia pestis Z176003 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

134. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_017266 (Yersinia pestis biovar Medievalis str. Harbin 35 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

135. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP033694 (Yersinia pestis strain FDAARGOS_602 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

136. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_009378 (Yersinia pestis Pestoides F plasmid MT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

137. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP033700 (Yersinia pestis strain FDAARGOS_601 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

138. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP033700 (Yersinia pestis strain FDAARGOS_601 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

139. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_006323 (Yersinia pestis plasmid pG8786, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

140. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045146 (Yersinia pestis strain SCPM-O-B-6899 (231) plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

141. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045164 (Yersinia pestis strain SCPM-O-B-6291 (C-25) plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

142. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045155 (Yersinia pestis strain SCPM-O-B-5935 (I-1996) plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

143. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045159 (Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

144. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006746 (Yersinia pestis 8787 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

145. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_003134 (Yersinia pestis CO92 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

146. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP045150 (Yersinia pestis strain SCPM-O-DNA-18 (I-3113) plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

147. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006790 (Yersinia pestis 2944 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

148. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006749 (Yersinia pestis 3770 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

149. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006756 (Yersinia pestis 1522 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

150. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_017155 (Yersinia pestis D106004 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

151. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_017158 (Yersinia pestis D182038 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

152. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_004835 (Yersinia pestis strain KIM5 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

153. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_004838 (Yersinia pestis KIM10+ plasmid pMT-1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

154. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP033692 (Yersinia pestis strain FDAARGOS_603 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

155. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP033693 (Yersinia pestis strain FDAARGOS_603 plasmid unnamed4) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

156. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006760 (Yersinia pestis 1413 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

157. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006779 (Yersinia pestis 1412 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

158. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP006752 (Yersinia pestis 3067 plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

159. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NC_008118 (Yersinia pestis Nepal516 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

160. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP016275 (Yersinia pestis strain Cadman plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

161. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP019709 (Yersinia pestis strain 195/P plasmid pMT1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

162. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009904 (Yersinia pestis Antiqua plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

163. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009841 (Yersinia pestis A1122 plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

164. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009989 (Yersinia pestis strain Nicholisk 41 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

165. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009934 (Yersinia pestis Angola plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

166. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP009843 (Yersinia pestis strain Dodson plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

167. spacer 2.21|2373026|32|NC_005966|CRISPRCasFinder,CRT matches to NZ_CP010021 (Yersinia pestis str. Pestoides B plasmid pMT, complete sequence) position: , mismatch: 10, identity: 0.688

accagaaatgattccagatattccagatgaat	CRISPR spacer
cgttgaaataatcccagatattccagaatacc	Protospacer
  . *****.**.**************  * .

168. spacer 3.2|2448203|32|NC_005966|CRISPRCasFinder,CRT matches to MN698247 (Pelagibacter phage HTVC115P, complete genome) position: , mismatch: 10, identity: 0.688

tttactcttattatactattacccctaacccc	CRISPR spacer
tttactcatattatacgattaccaatgttgta	Protospacer
******* ******** ******  *. . .

169. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007647 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence) position: , mismatch: 10, identity: 0.688

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tatcatcaacatcttttagcgcttctctaatt	Protospacer
 ********.******* ******. *  .

170. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 10, identity: 0.688

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tttcatcaatatctttttgcccgtttttccat	Protospacer
  ****************** * ** . . *

171. spacer 3.16|2449043|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 10, identity: 0.688

aatcatcaatatctttttgcgctttgcgtgaa	CRISPR spacer
tttcatcaatatctttttgcccgtttttccat	Protospacer
  ****************** * ** . . *

172. spacer 3.25|2449584|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to JN700521 (Staphylococcus phage StB20, complete genome) position: , mismatch: 10, identity: 0.688

ttgaaacctatgaactttgtgttatacgtgtc	CRISPR spacer
ccataacctataaactttgagttatacaaatt	Protospacer
... *******.******* *******. .*.

173. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594676 (Variovorax sp. PBS-H4 plasmid 2) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gcgccgattcctgctgttgctgcggtgacccg	Protospacer
.  ******.************ *** *

174. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP013413 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S28-C15) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gtgtaaacttctgctgttgctgggttaagagt	Protospacer
.  . .*.**************** * ****.

175. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP013671 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S33-C18, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gtgtaaacttctgctgttgctgggttaagagt	Protospacer
.  . .*.**************** * ****.

176. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP013414 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S29-C21) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gtgtaaacttctgctgttgctgggttaagagt	Protospacer
.  . .*.**************** * ****.

177. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP013672 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S38-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gtgtaaacttctgctgttgctgggttaagagt	Protospacer
.  . .*.**************** * ****.

178. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to AP013415 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S37-C22) position: , mismatch: 10, identity: 0.688

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
gtgtaaacttctgctgttgctgggttaagagt	Protospacer
.  . .*.**************** * ****.

179. spacer 3.30|2449884|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacgttgaatccagaaccagcaatcccagc	CRISPR spacer
agtgcgttgaatccggaaccggcaatcttcgg	Protospacer
.. .**********.*****.******.. *

180. spacer 3.34|2450124|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_003905 (Proteus vulgaris plasmid Rts1 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

tataactagcatgtcagaaataaaactatccg	CRISPR spacer
taaaactagcatggcagaaataagctttcgaa	Protospacer
** ********** *********. .* .  .

181. spacer 3.35|2450184|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MK496757 (Capybara microvirus Cap1_SP_263, complete genome) position: , mismatch: 10, identity: 0.688

cgttggtactgttgcaggtggtgcattgggga	CRISPR spacer
tgttgctactgttgcaggtgctgctgtaactg	Protospacer
.**** ************** ***  *..  .

182. spacer 3.41|2450544|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045411 (Roseovarius sp. THAF8 plasmid pTHAF8_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtttaatgtggcgttcaggtcttgttcgccaa	CRISPR spacer
cgtcgcctgggcgttcagatctttttcgccaa	Protospacer
  *.. .  *********.**** ********

183. spacer 3.41|2450544|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045394 (Roseovarius sp. THAF27 plasmid pTHAF27_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtttaatgtggcgttcaggtcttgttcgccaa	CRISPR spacer
cgtcgcctgggcgttcagatctttttcgccaa	Protospacer
  *.. .  *********.**** ********

184. spacer 3.41|2450544|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045405 (Roseovarius sp. THAF9 plasmid pTHAF9_a, complete sequence) position: , mismatch: 10, identity: 0.688

gtttaatgtggcgttcaggtcttgttcgccaa	CRISPR spacer
cgtcgcctgggcgttcagatctttttcgccaa	Protospacer
  *.. .  *********.**** ********

185. spacer 3.53|2451263|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MF668280 (Mycobacterium phage Phabba, complete genome) position: , mismatch: 10, identity: 0.688

atggttcggggttgtagctgtacgccccagat	CRISPR spacer
tcagttcggggttgtagctgaccgccagtgca	Protospacer
 ..*****************  ****   *

186. spacer 3.59|2451623|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046708 (Nostoc sp. ATCC 53789 plasmid pNsp_e, complete sequence) position: , mismatch: 10, identity: 0.688

aagttttatttaagcccaaagctaaagatagt	CRISPR spacer
aagttttacttatgcccaaagcttcttctcag	Protospacer
********.*** **********     * .

187. spacer 3.70|2452283|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atccgcgcccaatttgtcccacca-------atcttttt	CRISPR spacer
ttccgcgaccaatttgtccgaccacggaggca-------	Protospacer
 ****** *********** ****       *

188. spacer 3.74|2452523|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 10, identity: 0.688

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
cgggtaatcttgatgcgtacaacaaacttgct	Protospacer
 .*   ..********.********* ****.

189. spacer 3.79|2452823|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_048687 (Pseudomonas phage PMBT14, complete genome) position: , mismatch: 10, identity: 0.688

cttactttcgcttgcgcttcgttacgaatgcc	CRISPR spacer
attactttggcttgcgcctcgttaaccccttc	Protospacer
 ******* ********.******    . .*

190. spacer 3.82|2453003|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 10, identity: 0.688

aagcatgccttgatgcatacaacaaaattgcc	CRISPR spacer
cgggtaatcttgatgcgtacaacaaacttgct	Protospacer
 .*   ..********.********* ****.

191. spacer 3.1|2448143|32|NC_005966|CRISPRCasFinder,CRT matches to MN694092 (Marine virus AFVG_250M12, complete genome) position: , mismatch: 11, identity: 0.656

gacaccaaaggtaataaagctatgaaagaata	CRISPR spacer
gataccaaaggtaataaggctattgccattgg	Protospacer
**.**************.***** .  .   .

192. spacer 3.25|2449584|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025798 (Vibrio owensii strain 051011B plasmid unnamed1) position: , mismatch: 11, identity: 0.656

ttgaaacctatgaactttgtgttatacgtgtc	CRISPR spacer
cgaccaccaatgaacttcgtgttatacgaaga	Protospacer
. .  *** ********.********** .

193. spacer 3.28|2449764|32|NC_005966|CRISPRCasFinder,CRT,PILER-CR matches to MG945720 (UNVERIFIED: Microviridae sp. isolate 2084-1801, complete genome) position: , mismatch: 11, identity: 0.656

aatccgatttctgctgttgctggggttagagc	CRISPR spacer
ttagcgctttctgctgttgctgcggttgtttg	Protospacer
    ** *************** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2146441 : 2166411

Acinetobacter_phage(41.18%)

capsid,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004927709.1\|2146441_2147416_-	DUF2184 domain-containing protein	M4SQD1	Psychrobacter_phage	9.8e-51	38.2
WP_004927712.1\|2147422_2147896_-	hypothetical protein	NA	NA	NA	NA
WP_004927713.1\|2147907_2149119_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	7.2e-27	38.0
WP_004927715.1\|2149173_2149470_-	hypothetical protein	NA	NA	NA	NA
WP_004927718.1\|2149542_2150094_-	phage antirepressor Ant	A0A0R6PJV6	Moraxella_phage	8.3e-31	42.9
WP_004927720.1\|2150095_2150257_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_171056918.1\|2150368_2150647_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_004927724.1\|2150655_2151468_-\|capsid	minor capsid protein	M4T3R2	Psychrobacter_phage	9.0e-50	40.1
WP_004927726.1\|2151418_2152750_-	DUF1073 domain-containing protein	M4SN90	Psychrobacter_phage	4.4e-86	39.1
WP_004927727.1\|2152758_2154285_-\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	2.3e-94	42.4
WP_004927729.1\|2154262_2154739_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	1.4e-29	51.8
WP_004927732.1\|2154798_2155440_-	hypothetical protein	A0A0P0I8J9	Acinetobacter_phage	1.6e-105	83.5
WP_004927734.1\|2155408_2155876_-	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	1.8e-66	77.8
WP_004927736.1\|2156459_2156753_-	hypothetical protein	NA	NA	NA	NA
WP_004927738.1\|2156962_2157292_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_004927741.1\|2157304_2157601_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	1.3e-19	46.9
WP_004927743.1\|2157676_2158579_-	hypothetical protein	NA	NA	NA	NA
WP_004927744.1\|2158594_2159086_-	hypothetical protein	A0A0P0I4C3	Acinetobacter_phage	4.2e-18	36.4
WP_004927745.1\|2159133_2160462_-	AAA family ATPase	A0A2H4J6D5	uncultured_Caudovirales_phage	1.4e-121	59.5
WP_004927748.1\|2160455_2161436_-	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	1.2e-27	52.8
WP_004927751.1\|2161435_2161729_-	hypothetical protein	NA	NA	NA	NA
WP_004927752.1\|2161788_2162238_-	phage regulatory CII family protein	A0A2H4J3D5	uncultured_Caudovirales_phage	1.2e-51	68.7
WP_004927754.1\|2162262_2162508_-	hypothetical protein	A0A0N7IRE1	Acinetobacter_phage	4.3e-24	78.6
WP_011182447.1\|2162584_2163028_+	helix-turn-helix transcriptional regulator	A0A0P0J076	Acinetobacter_phage	7.4e-30	79.7
WP_004927758.1\|2163065_2164049_+	hypothetical protein	NA	NA	NA	NA
WP_004927760.1\|2164051_2165197_+	hypothetical protein	NA	NA	NA	NA
WP_004927761.1\|2165189_2165858_+	hypothetical protein	NA	NA	NA	NA
WP_011182450.1\|2165955_2166411_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	1.5e-25	47.6

DBSCAN-SWA_2

2423074 : 2432662

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171056925.1\|2423074_2423650_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.9e-103	91.1
WP_004928448.1\|2423650_2424700_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-168	89.0
WP_004928449.1\|2424710_2425517_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.3e-129	87.7
WP_004928451.1\|2425554_2426040_-	hypothetical protein	NA	NA	NA	NA
WP_017385020.1\|2426101_2426806_+	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	6.5e-89	74.7
WP_004928457.1\|2426816_2427818_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	4.4e-123	67.2
WP_004928460.1\|2427832_2430214_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	87.8
WP_004928462.1\|2430215_2431712_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	1.8e-213	75.6
WP_025094449.1\|2432107_2432662_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	4.1e-94	94.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_005966

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection