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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012470 Streptococcus equi subsp. zooepidemicus, complete genome 4 crisprs DEDDh,cas3,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT 0 10 6 0

Results visualization

1. NC_012470
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012470_1 1263308-1263424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012470_2 1550682-1550794 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012470_3 1604884-1606107 TypeI I-C
18 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012470_4 1734698-1734768 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012470_3 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605117-1605150 34 MK448864 Streptococcus phage Javan180, complete genome 30091-30124 0 1.0
NC_012470_3 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605117-1605150 34 MK448941 Streptococcus phage Javan446, complete genome 44464-44497 0 1.0
NC_012470_3 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605117-1605150 34 MK448957 Streptococcus phage Javan484, complete genome 46074-46107 0 1.0
NC_012470_3 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605319-1605352 34 MK448701 Streptococcus phage Javan197, complete genome 21091-21124 0 1.0
NC_012470_3 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605319-1605352 34 MK448869 Streptococcus phage Javan190, complete genome 21091-21124 0 1.0
NC_012470_3 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605319-1605352 34 MK448870 Streptococcus phage Javan192, complete genome 21091-21124 0 1.0
NC_012470_3 3.11|1605583|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605583-1605616 34 MK448864 Streptococcus phage Javan180, complete genome 14137-14170 0 1.0
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MK448864 Streptococcus phage Javan180, complete genome 15032-15064 0 1.0
NC_012470_3 3.13|1605714|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605714-1605747 34 MK448862 Streptococcus phage Javan178, complete genome 13435-13468 0 1.0
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448701 Streptococcus phage Javan197, complete genome 24249-24281 0 1.0
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448869 Streptococcus phage Javan190, complete genome 24249-24281 0 1.0
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448870 Streptococcus phage Javan192, complete genome 24249-24281 0 1.0
NC_012470_3 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT 1604916-1604950 35 MK448862 Streptococcus phage Javan178, complete genome 35071-35105 1 0.971
NC_012470_3 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT 1604916-1604950 35 MK448865 Streptococcus phage Javan182, complete genome 29844-29878 1 0.971
NC_012470_3 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT 1604916-1604950 35 MK448864 Streptococcus phage Javan180, complete genome 27741-27775 1 0.971
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448862 Streptococcus phage Javan178, complete genome 8032-8065 1 0.971
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK449010 Streptococcus phage Javan90, complete genome 10490-10523 1 0.971
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448845 Streptococcus phage Javan118, complete genome 9784-9817 1 0.971
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448833 Streptococcus phage Javan87, complete genome 10490-10523 1 0.971
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448673 Streptococcus phage Javan119, complete genome 11406-11439 1 0.971
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448767 Streptococcus phage Javan467, complete genome 24305-24337 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448685 Streptococcus phage Javan155, complete genome 24594-24626 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448771 Streptococcus phage Javan481, complete genome 23824-23856 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448942 Streptococcus phage Javan448, complete genome 15255-15287 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK449012 Streptococcus phage Javan94, complete genome 25503-25535 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 NC_004586 Streptococcus pyogenes phage 315.3, complete genome 24410-24442 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448969 Streptococcus phage Javan514, complete genome 25546-25578 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448964 Streptococcus phage Javan502, complete genome 24112-24144 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448943 Streptococcus phage Javan450, complete genome 24305-24337 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448972 Streptococcus phage Javan520, complete genome 24591-24623 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448865 Streptococcus phage Javan182, complete genome 22158-22190 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448855 Streptococcus phage Javan150, complete genome 24802-24834 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448786 Streptococcus phage Javan509, complete genome 24305-24337 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448774 Streptococcus phage Javan487, complete genome 22659-22691 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448963 Streptococcus phage Javan498, complete genome 19927-19959 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448773 Streptococcus phage Javan485, complete genome 25545-25577 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448777 Streptococcus phage Javan491, complete genome 24306-24338 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448845 Streptococcus phage Javan118, complete genome 24975-25007 1 0.97
NC_012470_3 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605913-1605945 33 MK448853 Streptococcus phage Javan144, complete genome 24594-24626 1 0.97
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK449012 Streptococcus phage Javan94, complete genome 9501-9534 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448775 Streptococcus phage Javan489, complete genome 11945-11978 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448794 Streptococcus phage Javan525, complete genome 10140-10173 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448944 Streptococcus phage Javan452, complete genome 12320-12353 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448672 Streptococcus phage Javan117, complete genome 7901-7934 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448849 Streptococcus phage Javan128, complete genome 7805-7838 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448958 Streptococcus phage Javan486, complete genome 10281-10314 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448850 Streptococcus phage Javan132, complete genome 12630-12663 2 0.941
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448765 Streptococcus phage Javan459, complete genome 10140-10173 2 0.941
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MK448858 Streptococcus phage Javan166, complete genome 29660-29692 2 0.939
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448675 Streptococcus phage Javan129, complete genome 12110-12143 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448771 Streptococcus phage Javan481, complete genome 8056-8089 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448973 Streptococcus phage Javan522, complete genome 9961-9994 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448969 Streptococcus phage Javan514, complete genome 10927-10960 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448972 Streptococcus phage Javan520, complete genome 7981-8014 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448763 Streptococcus phage Javan451, complete genome 9174-9207 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448774 Streptococcus phage Javan487, complete genome 8041-8074 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448778 Streptococcus phage Javan493, complete genome 9976-10009 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448773 Streptococcus phage Javan485, complete genome 10927-10960 3 0.912
NC_012470_3 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605385-1605418 34 MK448777 Streptococcus phage Javan491, complete genome 8272-8305 3 0.912
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MK448709 Streptococcus phage Javan231, complete genome 25718-25750 4 0.879
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MK448710 Streptococcus phage Javan233, complete genome 25718-25750 4 0.879
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MK448707 Streptococcus phage Javan227, complete genome 27915-27947 4 0.879
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 KX879641 Streptococcus phage CHPC577, complete genome 7481-7513 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892371 Streptococcus phage SW25, complete genome 7718-7750 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892372 Streptococcus phage SW26, complete genome 7718-7750 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 KX879642 Streptococcus phage CHPC926, complete genome 7104-7136 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892368 Streptococcus phage SW20, complete genome 7718-7750 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 KU678389 Streptococcus virus 9871, complete genome 7659-7691 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892350 Streptococcus phage SW16, complete genome 7484-7516 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892374 Streptococcus phage SW28, complete genome 7715-7747 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 KU678391 Streptococcus virus 9873, complete genome 7659-7691 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892369 Streptococcus phage SW22, complete genome 7715-7747 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 NC_031023 Streptococcus virus 9874, complete genome 7684-7716 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 NC_031094 Streptococcus virus 9872, complete genome 7660-7692 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892370 Streptococcus phage SW23, complete genome 7715-7747 6 0.818
NC_012470_3 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605649-1605681 33 MH892365 Streptococcus phage SW17, complete genome 7718-7750 6 0.818
NC_012470_3 3.9|1605451|33|NC_012470|CRISPRCasFinder,CRT 1605451-1605483 33 NZ_CP049914 Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence 594371-594403 7 0.788
NC_012470_3 3.15|1605848|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR 1605848-1605880 33 NC_047897 Lactobacillus phage Lenus, complete genome 31307-31339 7 0.788

1. spacer 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448864 (Streptococcus phage Javan180, complete genome) position: , mismatch: 0, identity: 1.0

gagaccaccattgattgaatgtatttgatctttt	CRISPR spacer
gagaccaccattgattgaatgtatttgatctttt	Protospacer
**********************************

2. spacer 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448941 (Streptococcus phage Javan446, complete genome) position: , mismatch: 0, identity: 1.0

gagaccaccattgattgaatgtatttgatctttt	CRISPR spacer
gagaccaccattgattgaatgtatttgatctttt	Protospacer
**********************************

3. spacer 3.4|1605117|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

gagaccaccattgattgaatgtatttgatctttt	CRISPR spacer
gagaccaccattgattgaatgtatttgatctttt	Protospacer
**********************************

4. spacer 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448701 (Streptococcus phage Javan197, complete genome) position: , mismatch: 0, identity: 1.0

ctggggacttggataaaggtatccatatcaagtc	CRISPR spacer
ctggggacttggataaaggtatccatatcaagtc	Protospacer
**********************************

5. spacer 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448869 (Streptococcus phage Javan190, complete genome) position: , mismatch: 0, identity: 1.0

ctggggacttggataaaggtatccatatcaagtc	CRISPR spacer
ctggggacttggataaaggtatccatatcaagtc	Protospacer
**********************************

6. spacer 3.7|1605319|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448870 (Streptococcus phage Javan192, complete genome) position: , mismatch: 0, identity: 1.0

ctggggacttggataaaggtatccatatcaagtc	CRISPR spacer
ctggggacttggataaaggtatccatatcaagtc	Protospacer
**********************************

7. spacer 3.11|1605583|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448864 (Streptococcus phage Javan180, complete genome) position: , mismatch: 0, identity: 1.0

tatctttaaaagtagttggaacgacagggctaaa	CRISPR spacer
tatctttaaaagtagttggaacgacagggctaaa	Protospacer
**********************************

8. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448864 (Streptococcus phage Javan180, complete genome) position: , mismatch: 0, identity: 1.0

aaagcagctaaactcgcttttcaaacggaacac	CRISPR spacer
aaagcagctaaactcgcttttcaaacggaacac	Protospacer
*********************************

9. spacer 3.13|1605714|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 0, identity: 1.0

atgttggttggactgttcgtcaatgtttgatttg	CRISPR spacer
atgttggttggactgttcgtcaatgtttgatttg	Protospacer
**********************************

10. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448701 (Streptococcus phage Javan197, complete genome) position: , mismatch: 0, identity: 1.0

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaatagagcaagcaccttaacaaa	Protospacer
*********************************

11. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448869 (Streptococcus phage Javan190, complete genome) position: , mismatch: 0, identity: 1.0

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaatagagcaagcaccttaacaaa	Protospacer
*********************************

12. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448870 (Streptococcus phage Javan192, complete genome) position: , mismatch: 0, identity: 1.0

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaatagagcaagcaccttaacaaa	Protospacer
*********************************

13. spacer 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.971

gaaaggagtcacaaatgattagttcgcagtgtcgg	CRISPR spacer
gaaaggagtcacaaatgattagttcgcagtgtcga	Protospacer
**********************************.

14. spacer 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT matches to MK448865 (Streptococcus phage Javan182, complete genome) position: , mismatch: 1, identity: 0.971

gaaaggagtcacaaatgattagttcgcagtgtcgg	CRISPR spacer
gaaaggagtcacaaatgattagttcgcagtgtcga	Protospacer
**********************************.

15. spacer 3.1|1604916|35|NC_012470|CRISPRCasFinder,CRT matches to MK448864 (Streptococcus phage Javan180, complete genome) position: , mismatch: 1, identity: 0.971

gaaaggagtcacaaatgattagttcgcagtgtcgg	CRISPR spacer
gaaaggagtcacaaatgattagttcgcagtgtcga	Protospacer
**********************************.

16. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.971

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataatactagattgctcattcaagcaccccac	Protospacer
**************************.*******

17. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 1, identity: 0.971

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataatactagattgctcattcaagcaccccac	Protospacer
**************************.*******

18. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 1, identity: 0.971

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataatactagattgctcattcaagcaccccac	Protospacer
**************************.*******

19. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 1, identity: 0.971

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataatactagattgctcattcaagcaccccac	Protospacer
**************************.*******

20. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 1, identity: 0.971

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataatactagattgctcattcaagcaccccac	Protospacer
**************************.*******

21. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

22. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448685 (Streptococcus phage Javan155, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

23. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

24. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

25. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

26. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

27. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

28. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

29. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

30. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

31. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448865 (Streptococcus phage Javan182, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaatagagcaagcaccttagcaaa	Protospacer
****************************.****

32. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

33. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

34. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

35. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

36. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

37. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaatagagcaagcaccttgacaaa	Protospacer
***************************.*****

38. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

39. spacer 3.16|1605913|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448853 (Streptococcus phage Javan144, complete genome) position: , mismatch: 1, identity: 0.97

gatatcttgcaatagagcaagcaccttaacaaa	CRISPR spacer
gatatcttgcaacagagcaagcaccttaacaaa	Protospacer
************.********************

40. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
tgataatactagattgctcattcaagcaccccac	Protospacer
.*************************.*******

41. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

42. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

43. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

44. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

45. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

46. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

47. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

48. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 2, identity: 0.941

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccac	Protospacer
****** *******************.*******

49. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 2, identity: 0.939

aaagcagctaaactcgcttttcaaacggaacac	CRISPR spacer
aaagcagctaaacttgcttttcaaacagaacac	Protospacer
**************.***********.******

50. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
tgataatactagattgctcattcaagcaccccgc	Protospacer
.*************************.*****.*

51. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

52. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

53. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

54. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

55. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

56. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

57. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

58. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

59. spacer 3.8|1605385|34|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 3, identity: 0.912

cgataatactagattgctcattcaagtaccccac	CRISPR spacer
cgataaaactagattgctcattcaagcaccccgc	Protospacer
****** *******************.*****.*

60. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448709 (Streptococcus phage Javan231, complete genome) position: , mismatch: 4, identity: 0.879

aaagcagctaaactcgcttttcaaacggaacac	CRISPR spacer
gcagcagctaaactcgctttgcaaacggaacat	Protospacer
. ****************** ***********.

61. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448710 (Streptococcus phage Javan233, complete genome) position: , mismatch: 4, identity: 0.879

aaagcagctaaactcgcttttcaaacggaacac	CRISPR spacer
gcagcagctaaactcgctttgcaaacggaacat	Protospacer
. ****************** ***********.

62. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 4, identity: 0.879

aaagcagctaaactcgcttttcaaacggaacac	CRISPR spacer
gcagcagctaaactcgctttgcaaacggaacat	Protospacer
. ****************** ***********.

63. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to KX879641 (Streptococcus phage CHPC577, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

64. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892371 (Streptococcus phage SW25, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

65. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892372 (Streptococcus phage SW26, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

66. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to KX879642 (Streptococcus phage CHPC926, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

67. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892368 (Streptococcus phage SW20, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

68. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to KU678389 (Streptococcus virus 9871, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

69. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892350 (Streptococcus phage SW16, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

70. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892374 (Streptococcus phage SW28, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

71. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to KU678391 (Streptococcus virus 9873, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

72. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892369 (Streptococcus phage SW22, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

73. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to NC_031023 (Streptococcus virus 9874, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

74. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to NC_031094 (Streptococcus virus 9872, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

75. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892370 (Streptococcus phage SW23, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

76. spacer 3.12|1605649|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to MH892365 (Streptococcus phage SW17, complete genome) position: , mismatch: 6, identity: 0.818

aaagcagct---aaactcgcttttcaaacggaacac	CRISPR spacer
---gccgcttggaaactcgctttccaaacagaacac	Protospacer
   ** ***   ***********.*****.******

77. spacer 3.9|1605451|33|NC_012470|CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

gctctgtttgagtttggtggtaatggattatcg	CRISPR spacer
gctgtgtttgagtttagtggtaatgcgttgcca	Protospacer
*** ***********.********* .**..*.

78. spacer 3.15|1605848|33|NC_012470|CRISPRCasFinder,CRT,PILER-CR matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 7, identity: 0.788

caatatcaatcttgtaatttgcaaaaaatagct	CRISPR spacer
aatcttcaatgttgtaatttccaaaaaatagtt	Protospacer
 * . ***** ********* **********.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 33262 : 43415 6 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 98916 : 151460 42 Cronobacter_phage(10.0%) tRNA,protease,transposase,bacteriocin,holin NA
DBSCAN-SWA_3 239848 : 309611 54 Clostridium_phage(12.5%) tRNA,integrase,protease,transposase attL 247736:247753|attR 284431:284448
DBSCAN-SWA_4 466726 : 510086 34 Streptococcus_phage(33.33%) tRNA,bacteriocin NA
DBSCAN-SWA_5 872833 : 935672 56 Bacillus_phage(22.22%) transposase,bacteriocin,tRNA NA
DBSCAN-SWA_6 1995193 : 2004099 10 Streptococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage