CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	2 crisprs	c2c9_V-U4,DEDDh,DinG,csf5gr6,csf1gr8,csf2gr7,csf3gr5	0	31	1
NC_006824	Aromatoleum aromaticum EbN1 plasmid 2, complete sequence	0 crisprs	NA	0	0	1
NC_006513	Aromatoleum aromaticum EbN1, complete genome	5 crisprs	RT,csa3,c2c9_V-U4,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,Cas9_archaeal,WYL,DinG	1	37	13

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_006823_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006823_1

1-579

Orphan

Consensus_repeat	Method
CGCGCATCGCGGGGGTTGAAG	CRT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	PILER-CR
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CRISPRCasFinder

9 spacers

The CRISPR arrays of NC_006823_1

>merge|NC_006823|1|1-579|CRT,PILER-CR,CRISPRCasFinder
CACCATCACCCAGGGTTGAAGTGCCTTGCGGCAAGAGCTCACGATCTCGACGAGGTGTTCCCCGCGCATCGCGGGGGTTGAAGCGTCAGGTCTGCAACAAAGATCAACCCTACTCGGTGTTCCCCGCGCATCGCGGGGGTTGAAGGGCTGCGAGGATGGCAGCAACCCGCATTTCAGTGTGTTCCCCGCGCATCGCGGGGGTTGAAGTGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTGGTGTTCCCCGCGCATCGCGGGGGTTGAAGGGCCGACGTTCGGTCAAGAGGCTGGACCCGTCCGTGTTCCCCGCGCATCGCGGGGGTTGAAGCAAGTAACGACACGCCCACCAGTCGCGCCCCCGGTGTTCCCCGCGCATCGCGGGGGTTGAAGAATGCCCTCTTGCGTCTCACGACGTTCGAGGCCGTGTTCCCCGCGCATCGCGGGGGTTGAAGGATCACACGCCGCTCGATTGGATCGTCATCTGCGTGTTCCCCGCGCATCGCGGGGGTTGAAGGGTGGAACGAGCCTTCTCCATGCCCCCTCCGGCGTGTTCCCCGCGCATCGCGGGGGTTGAAG

>NC_006823|1|1|1-579|CRT
CACCATCACCCAGGGTTGAAG	TGCCTTGCGGCAAGAGCTCACGATCTCGACGAGGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	CGTCAGGTCTGCAACAAAGATCAACCCTACTCGGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	GGCTGCGAGGATGGCAGCAACCCGCATTTCAGTGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	TGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTGGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	GGCCGACGTTCGGTCAAGAGGCTGGACCCGTCCGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	CAAGTAACGACACGCCCACCAGTCGCGCCCCCGGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	AATGCCCTCTTGCGTCTCACGACGTTCGAGGCCGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGCGTGTTCCC
CGCGCATCGCGGGGGTTGAAG	GGTGGAACGAGCCTTCTCCATGCCCCCTCCGGCGTGTTCCC
CGCGCATCGCGGGGGTTGAAG

>NC_006823|1|1|55-579|PILER-CR
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CGTCAGGTCTGCAACAAAGATCAACCCTACTCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCTGCGAGGATGGCAGCAACCCGCATTTCAGT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCCGACGTTCGGTCAAGAGGCTGGACCCGTCC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CAAGTAACGACACGCCCACCAGTCGCGCCCCCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	AATGCCCTCTTGCGTCTCACGACGTTCGAGGCC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGTGGAACGAGCCTTCTCCATGCCCCCTCCGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG

>NC_006823|1|1|55-579|CRISPRCasFinder
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CGTCAGGTCTGCAACAAAGATCAACCCTACTCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCTGCGAGGATGGCAGCAACCCGCATTTCAGT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCCGACGTTCGGTCAAGAGGCTGGACCCGTCC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CAAGTAACGACACGCCCACCAGTCGCGCCCCCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	AATGCCCTCTTGCGTCTCACGACGTTCGAGGCC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGTGGAACGAGCCTTCTCCATGCCCCCTCCGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_006823.1\|WP_041647765.1\|1672_3163_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_006823.1\|WP_162014374.1\|9352_9700_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_004359146.1\|718_931_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254912.1\|8927_9233_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254920.1\|927_1686_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_006823.1\|WP_157866758.1\|8733_8931_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254913.1\|7795_8365_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371662
NC_006823.1\|WP_011254915.1\|4982_7004_-\|PcfJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|379539
NC_006823.1\|WP_041647767.1\|8480_8750_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254914.1\|7234_7690_-\|hypothetical-protein	unknown	unknown	unknown

>NC_006823.1|WP_004359146.1|718_931_-|hypothetical-protein
MKTDHPPSGLLRGLDLLIDADWTPEQARAVIELLDDLRERIWAHYELALFEHYRQDRLTQAELPFDDPSF
>NC_006823.1|WP_011254920.1|927_1686_-|ATP-binding-protein
MTTPEPLLARARALQLHGVVSHWAECAQAPWIAPLIEWEETERARRSLERRLRCAHIGRFKPLADFDWRWPEQCDQAAIAELMTLGFLETATNALLVGPSGLGKTTIAQNIAHQAVLRGHTVLFTTAGQLLGELAALDSDSALRRRLRHYASPTLLVIDEVGYLSYSNRHADLLFELISRRHEKKSTLITTNKSFAEWSEVFPNAACVVALIDRLVHHAEIIALKGPSWRHKEAQERAATNARKRKSARSPA
>NC_006823.1|WP_041647765.1|1672_3163_-|IS21-family-transposase
MALSPEHEAQILRYYHAERWRIGTIAVQLGLHRDTVARVLAQAGLPRHGPVQRASAIDPYLPFLHETLAQFPRLTAARLYDMVRARGYPGRPDHFRHLIARHRPRPSAEAYLRLRTLPGEQAQVDWGHFGHLTIGRARRPLMAFVMVLSWSRQIYLRFFLDARMENFLRGHVGAFECWGAVPRIALYDNLKSAVLERCGNAIRFHPTLLALAGHYRFEPRPVAVARGNEKGRVERAIRYVREAFFAGCAFADLDDLNAQAQAWCEGAAGARRCPEDASMTVAEAFAAERERLLARPETPFPTDELRAVSAGKTPYVRFDLNDYSIPHTHVRRTLTVLADPLRVRILDGENVIATHARSYDRRQQIECDAHLEALVAHKHAASAHRATDRLTAAVPTCQALLAQAAERGEPLGRTTRALTDLLDRYGADELGAAVDEALARGVPHPNAVRLALERRREAPPPLGVPLPAHLKTRDVTVRAHPLAGYDRLLEDDHDDA
>NC_006823.1|WP_011254915.1|4982_7004_-|PcfJ-domain-containing-protein
MAGPSQLLWGVALFLVFDLTEILVSIGFSEVAGHISYVQFQPHMEIEMKKLQAVRRTLSGASVEPILAALGEFVDVEELFHIASRHDGYRDGGCIAGQAVSSAVQDLFFGGRGGVYNDVDCFAPAAGHHFESTEVRSRVKTVQMADVVGEVDYEQINARVVPRYRVLSSSRMDKLNLVQIDEYARNKPIELTASILRSFDFNCVQVGIDLVERKLVWTPAFERFLATRQIEVESTHTPAHTAIRLAKKLGELENVYVDQDRVFRTLAGAIMRLKVAEAHTERGKGQKDEMIASLATLGASDPRSAMGTLYGQRRFGKLLAQKARDNESTLSPYFSLCEEGQSGGVFSLEPKRLPDESFLRLASRRHVAEYARLAAVFLRPHKPEVKARAAALLRVDPVSLEPITGHIHIWPAHPSSSVIEMAHEKVSVKEMDRFLAVCDRHRGLMSRVQMRNSLAEQVGVVQVVQKLASEHGQWVYGLIEARADVYGHPFDGLEAYLTEQIGLAREDMLKPLIHRRLRQSVYDGVAVKELVTRAECFQEGEDLHHCIGGYAGALSYGKTVLLSLRSSEKLTSMWSSAEISLDDLARPVIRQHYGPCNSPACEAHQAVLKQVVDDLVVGELVARTRWLQRLSWLGYRVAPLVLRGRSFKRKAAAVVARFRPKPKPKFDPDVIQW
>NC_006823.1|WP_011254914.1|7234_7690_-|hypothetical-protein
MESTTDQPVQLHGKMEYLHRKKAVGPIAERAFSRILEDNPDFLTIEDKLLQIANENASLKSRFARILRFADVIAAAISSHAGCKHACSSCCHISVGLSGAEAQLHPRYRNATLFTRHCIPHLSRQSRRALELRNTPLPNSFLGLSHGKTGK
>NC_006823.1|WP_011254913.1|7795_8365_-|hypothetical-protein
MTSTKKKPVPKCNQSSKWKRGVRERIAAQQKQNSKKKATKNSKPQAKFLPWERQPVTCPYCSRRAMLVTGQVIYPHRPDLHDLNFWLCDHCKAYVGTHKAGLGWGNGTRPKGTLADEPTRRARRAAHAAFDPFWQKGDLSRRKAYAWLAESLGLSVEETHLGAFDVATCQRVIELCVARRSQLSDDCLL
>NC_006823.1|WP_041647767.1|8480_8750_-|hypothetical-protein
MPSTAELQEEINRLQRALTQSENRAEMYFQQLVMGIHVRSDLKPFLDQVERNKGRSAERERCIAICLKESKEPNDLGDILAHRIRTLNA
>NC_006823.1|WP_157866758.1|8733_8931_-|hypothetical-protein
MTTWIIDVRDRVGQRVQPDADVPPDSLRFRKVVADTFTEALLKAQADVAALTVPSKMEMPHAKHC
>NC_006823.1|WP_011254912.1|8927_9233_-|hypothetical-protein
MSNTPELAPIRSQLDALTAIARERRLGAAPDFAGAVGGADIDFMTPEERELRHQLLMQFPTFAEDRAAARQRVAERIAARRRGLHIRESAARDHAIEDFRK
>NC_006823.1|WP_162014374.1|9352_9700_-|hypothetical-protein
MNTVSDPVFWITPESIHALRCAFDATTKGSWHAEASMTKPTISITGNGLRSVVARLDENGLCHEHGGSALGNALFIARAHEMMPFLLACVEVAQQAATGELAGDALQAKAQRIFD

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Crispr_ID: NC_006823_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006823_2

4003-4908

Orphan

Consensus_repeat	Method
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CRISPRCasFinder
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CRT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	PILER-CR

14 spacers

The CRISPR arrays of NC_006823_2

>merge|NC_006823|2|4003-4908|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCATCGCGGGGGTTGAAGGGTTATGATGATGTGTGTCGGCGCGACGGTGGCGTGTTCCCCGCGCATCGCGGGGGTTGAAGTGTGTCGCGTTTGCGGACGCGGTCCCCGTCGAGGTGTTCCCCGCGCATCGTATAAGCGGGGGTTGAAGCACTGACCCCCCGCGTTTCTCGGGTCGGCAGGCGTGTTCCCCGCGCATCGCGGGGGTTGAAGGAACGTGGTTCGAGTCGCATTGAGCAAGCTCTTGTGTTCCCCGCGCATCGCGGGGGTTGAAGGTTGTGCAGAACGCTACGGCTACACGCATGACCGTGTTCCCCGCGCATCGCGGGGGTTGAAGTGAGCTGACCTAGTAGCGCTAGCACCTATTCGAAGTGTTCCCCGCGCATCGCGGGGGTTGAAGGTAGCTGAGGGGGTGAGTACACCGTCGATCTCGGTGTTCCCCGCGCATCGCGGGGGTTGAAGCGCGGAAGGGGTCGGAGTTGAACACCATCGCGAGTGTTCCCCGCGCATCGCGGGGGTTGAAGTATGGGCTTCTATTGCGGCGCGTCGAGCGTCACTGTGTTCCCCGCGCATCGCGGGGGTTGAAGGGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCGGTGTTCCCCGCGCATCGCGGGGGTTGAAGGTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTCGTGTTCCCCGCGCATCGCGGGGGTTGAAGGATCACACGCCGCTCGATTGGATCGTCATCTGCGTGTTCCCCGCGCATCGCGGGGGTTGAAGGATGTACAAACTCATCCAGGCGTCGGTCAAATTGTGTTCCCCGCACCTCGCGGGGTTGAAGGGACTTGCTGTAACTGCCCTCGAAGGCGAATGTTGTGTTCCCCGTATATCTCGGGGGTTAAAA

>NC_006823|2|2|4003-4908|CRISPRCasFinder
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGTTATGATGATGTGTGTCGGCGCGACGGTGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGTGTCGCGTTTGCGGACGCGGTCCCCGTCGAG
GTGTTCCCCGCGCATCGTATAAGCGGGGG	TTGAAGCACTGACCCCCCGCGTTTCTCGGGTCGGCAGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GAACGTGGTTCGAGTCGCATTGAGCAAGCTCTT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTTGTGCAGAACGCTACGGCTACACGCATGACC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGAGCTGACCTAGTAGCGCTAGCACCTATTCGAA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTAGCTGAGGGGGTGAGTACACCGTCGATCTCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CGCGGAAGGGGTCGGAGTTGAACACCATCGCGA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TATGGGCTTCTATTGCGGCGCGTCGAGCGTCACT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATGTACAAACTCATCCAGGCGTCGGTCAAATT
GTGTTCCCCGCACCTCGCGGGGTTGAAGG	GACTTGCTGTAACTGCCCTCGAAGGCGAATGTT
GTGTTCCCCGTATATCTCGGGGGTTAAAA

>NC_006823|2|2|4003-4908|CRT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGTTATGATGATGTGTGTCGGCGCGACGGTGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGTGTCGCGTTTGCGGACGCGGTCCCCGTCGAG
GTGTTCCCCGCGCATCGTATAAGCGGGGG	TTGAAGCACTGACCCCCCGCGTTTCTCGGGTCGGCAGGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GAACGTGGTTCGAGTCGCATTGAGCAAGCTCTT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTTGTGCAGAACGCTACGGCTACACGCATGACC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGAGCTGACCTAGTAGCGCTAGCACCTATTCGAA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTAGCTGAGGGGGTGAGTACACCGTCGATCTCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CGCGGAAGGGGTCGGAGTTGAACACCATCGCGA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TATGGGCTTCTATTGCGGCGCGTCGAGCGTCACT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATGTACAAACTCATCCAGGCGTCGGTCAAATT
GTGTTCCCCGCACCTCGCGGGGTTGAAGG	GACTTGCTGTAACTGCCCTCGAAGGCGAATGTT
GTGTTCCCCGTATATCTCGGGGGTTAAAA

>NC_006823|2|2|4195-4784|PILER-CR
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GAACGTGGTTCGAGTCGCATTGAGCAAGCTCTT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTTGTGCAGAACGCTACGGCTACACGCATGACC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TGAGCTGACCTAGTAGCGCTAGCACCTATTCGAA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTAGCTGAGGGGGTGAGTACACCGTCGATCTCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	CGCGGAAGGGGTCGGAGTTGAACACCATCGCGA
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	TATGGGCTTCTATTGCGGCGCGTCGAGCGTCACT
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCG
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG	GATCACACGCCGCTCGATTGGATCGTCATCTGC
GTGTTCCCCGCGCATCGCGGGGGTTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_006823.1\|WP_041647765.1\|1672_3163_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_006823.1\|WP_011254914.1\|7234_7690_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254912.1\|8927_9233_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_004359146.1\|718_931_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_049780390.1\|10673_11744_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_006823.1\|WP_041647767.1\|8480_8750_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_162014374.1\|9352_9700_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_083783042.1\|10136_10538_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|377847
NC_006823.1\|WP_011254920.1\|927_1686_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_006823.1\|WP_157866758.1\|8733_8931_-\|hypothetical-protein	unknown	unknown	unknown
NC_006823.1\|WP_011254913.1\|7795_8365_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371662
NC_006823.1\|WP_011254915.1\|4982_7004_-\|PcfJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|379539
NC_006823.1\|WP_041647770.1\|9719_9944_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_006823.1\|WP_041647765.1\|1672_3163_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.99599e-20
NC_006823.1\|WP_083783042.1\|10136_10538_-\|cell-wall-hydrolase	gnl\|CDD\|377847	pfam07486, Hydrolase_2, Cell Wall Hydrolase. These enzymes have been implicated in cell wall hydrolysis, most extensively in Bacillus subtilis. For instance Bacillus subtilis steB is expressed during sporulation as an inactive form and then deposited on the cell outer cortex. During germination the the enzyme is activated and hydrolyzes the cortex. A similar role is carried out by the partially redundant Bacillus subtilis CwlJ. It is not clear whether these enzymes are amidases or peptidases.	1.26961e-29
NC_006823.1\|WP_011254920.1\|927_1686_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.10445e-51
NC_006823.1\|WP_011254915.1\|4982_7004_-\|PcfJ-domain-containing-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	4.70074e-10
NC_006823.1\|WP_049780390.1\|10673_11744_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.11062e-26
NC_006823.1\|WP_011254913.1\|7795_8365_-\|hypothetical-protein	gnl\|CDD\|371662	pfam11672, DUF3268, zinc-finger-containing domain. This is a family of bacterial and plasmid sequences that carry at least one zinc-finger towards the N-terminus and a possible second at the C-terminus.	1.50306e-42

>NC_006823.1|WP_041647765.1|1672_3163_-|IS21-family-transposase
MALSPEHEAQILRYYHAERWRIGTIAVQLGLHRDTVARVLAQAGLPRHGPVQRASAIDPYLPFLHETLAQFPRLTAARLYDMVRARGYPGRPDHFRHLIARHRPRPSAEAYLRLRTLPGEQAQVDWGHFGHLTIGRARRPLMAFVMVLSWSRQIYLRFFLDARMENFLRGHVGAFECWGAVPRIALYDNLKSAVLERCGNAIRFHPTLLALAGHYRFEPRPVAVARGNEKGRVERAIRYVREAFFAGCAFADLDDLNAQAQAWCEGAAGARRCPEDASMTVAEAFAAERERLLARPETPFPTDELRAVSAGKTPYVRFDLNDYSIPHTHVRRTLTVLADPLRVRILDGENVIATHARSYDRRQQIECDAHLEALVAHKHAASAHRATDRLTAAVPTCQALLAQAAERGEPLGRTTRALTDLLDRYGADELGAAVDEALARGVPHPNAVRLALERRREAPPPLGVPLPAHLKTRDVTVRAHPLAGYDRLLEDDHDDA
>NC_006823.1|WP_011254920.1|927_1686_-|ATP-binding-protein
MTTPEPLLARARALQLHGVVSHWAECAQAPWIAPLIEWEETERARRSLERRLRCAHIGRFKPLADFDWRWPEQCDQAAIAELMTLGFLETATNALLVGPSGLGKTTIAQNIAHQAVLRGHTVLFTTAGQLLGELAALDSDSALRRRLRHYASPTLLVIDEVGYLSYSNRHADLLFELISRRHEKKSTLITTNKSFAEWSEVFPNAACVVALIDRLVHHAEIIALKGPSWRHKEAQERAATNARKRKSARSPA
>NC_006823.1|WP_004359146.1|718_931_-|hypothetical-protein
MKTDHPPSGLLRGLDLLIDADWTPEQARAVIELLDDLRERIWAHYELALFEHYRQDRLTQAELPFDDPSF
>NC_006823.1|WP_011254915.1|4982_7004_-|PcfJ-domain-containing-protein
MAGPSQLLWGVALFLVFDLTEILVSIGFSEVAGHISYVQFQPHMEIEMKKLQAVRRTLSGASVEPILAALGEFVDVEELFHIASRHDGYRDGGCIAGQAVSSAVQDLFFGGRGGVYNDVDCFAPAAGHHFESTEVRSRVKTVQMADVVGEVDYEQINARVVPRYRVLSSSRMDKLNLVQIDEYARNKPIELTASILRSFDFNCVQVGIDLVERKLVWTPAFERFLATRQIEVESTHTPAHTAIRLAKKLGELENVYVDQDRVFRTLAGAIMRLKVAEAHTERGKGQKDEMIASLATLGASDPRSAMGTLYGQRRFGKLLAQKARDNESTLSPYFSLCEEGQSGGVFSLEPKRLPDESFLRLASRRHVAEYARLAAVFLRPHKPEVKARAAALLRVDPVSLEPITGHIHIWPAHPSSSVIEMAHEKVSVKEMDRFLAVCDRHRGLMSRVQMRNSLAEQVGVVQVVQKLASEHGQWVYGLIEARADVYGHPFDGLEAYLTEQIGLAREDMLKPLIHRRLRQSVYDGVAVKELVTRAECFQEGEDLHHCIGGYAGALSYGKTVLLSLRSSEKLTSMWSSAEISLDDLARPVIRQHYGPCNSPACEAHQAVLKQVVDDLVVGELVARTRWLQRLSWLGYRVAPLVLRGRSFKRKAAAVVARFRPKPKPKFDPDVIQW
>NC_006823.1|WP_011254914.1|7234_7690_-|hypothetical-protein
MESTTDQPVQLHGKMEYLHRKKAVGPIAERAFSRILEDNPDFLTIEDKLLQIANENASLKSRFARILRFADVIAAAISSHAGCKHACSSCCHISVGLSGAEAQLHPRYRNATLFTRHCIPHLSRQSRRALELRNTPLPNSFLGLSHGKTGK
>NC_006823.1|WP_011254913.1|7795_8365_-|hypothetical-protein
MTSTKKKPVPKCNQSSKWKRGVRERIAAQQKQNSKKKATKNSKPQAKFLPWERQPVTCPYCSRRAMLVTGQVIYPHRPDLHDLNFWLCDHCKAYVGTHKAGLGWGNGTRPKGTLADEPTRRARRAAHAAFDPFWQKGDLSRRKAYAWLAESLGLSVEETHLGAFDVATCQRVIELCVARRSQLSDDCLL
>NC_006823.1|WP_041647767.1|8480_8750_-|hypothetical-protein
MPSTAELQEEINRLQRALTQSENRAEMYFQQLVMGIHVRSDLKPFLDQVERNKGRSAERERCIAICLKESKEPNDLGDILAHRIRTLNA
>NC_006823.1|WP_157866758.1|8733_8931_-|hypothetical-protein
MTTWIIDVRDRVGQRVQPDADVPPDSLRFRKVVADTFTEALLKAQADVAALTVPSKMEMPHAKHC
>NC_006823.1|WP_011254912.1|8927_9233_-|hypothetical-protein
MSNTPELAPIRSQLDALTAIARERRLGAAPDFAGAVGGADIDFMTPEERELRHQLLMQFPTFAEDRAAARQRVAERIAARRRGLHIRESAARDHAIEDFRK
>NC_006823.1|WP_162014374.1|9352_9700_-|hypothetical-protein
MNTVSDPVFWITPESIHALRCAFDATTKGSWHAEASMTKPTISITGNGLRSVVARLDENGLCHEHGGSALGNALFIARAHEMMPFLLACVEVAQQAATGELAGDALQAKAQRIFD
>NC_006823.1|WP_041647770.1|9719_9944_-|hypothetical-protein
MLTLINGDGAGLRPAHHFNDVLVTTTRLIQYVEKGQIEVAHLLAANFTPLERCVVSRLMINRGIAPQTVLRTLS
>NC_006823.1|WP_083783042.1|10136_10538_-|cell-wall-hydrolase
MEMAITCLALNLYHEARGEPEIGQWAVAQVTMNRAEHDPAKVCDTVFKPRQFSWTNPLVEAPTPEIRRARAENYMPREAQAWELAKKIARRTLQGRGRNVVGGATHYHADYVAPRWASTFSQVAQIGSHVFYR
>NC_006823.1|WP_049780390.1|10673_11744_+|ankyrin-repeat-domain-containing-protein
MEMFLRSDMIHTEGFRILSEICMKNRPDLSFIIDAGFSEVYPHQLAARFPHVVAKMEDLWDNPQAMNVYFEDLLVSKRPNRKGFPPEVGKEIIRLSLAYERLRLITRPTARLEPKAEDLSETTRKARERLKTLGIENDLVSFARAVSTCNSDLCALMIEAGLDINMRDHRGLTMLIVCAMRGQKESAERLMKLGADVDVRDSDGYTALHWASEGGNTPFVLSLLRKGAQVDPQSRTGVTPLMLAASAGRYTTAEGLLKHGACPNITADTGATALYRAVANDHLAVAELLVAKGASVHSKLENGPSLIELAKRSEHPGIRELIEHVQTNLWNTFDTKENRGTRPAGHSILGLYPKPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006823_1	1.1\|22\|41\|NC_006823\|CRT	22-62	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	22-62	0	1.0
NC_006823_1	1.2\|84\|41\|NC_006823\|CRT	84-124	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	84-124	0	1.0
NC_006823_1	1.3\|146\|41\|NC_006823\|CRT	146-186	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	146-186	0	1.0
NC_006823_1	1.4\|208\|41\|NC_006823\|CRT	208-248	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	208-248	0	1.0
NC_006823_1	1.5\|270\|41\|NC_006823\|CRT	270-310	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	270-310	0	1.0
NC_006823_1	1.6\|332\|41\|NC_006823\|CRT	332-372	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	332-372	0	1.0
NC_006823_1	1.7\|394\|41\|NC_006823\|CRT	394-434	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	394-434	0	1.0
NC_006823_1	1.8\|456\|41\|NC_006823\|CRT	456-496	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	456-496	0	1.0
NC_006823_1	1.8\|456\|41\|NC_006823\|CRT	456-496	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4723-4763	0	1.0
NC_006823_1	1.9\|518\|41\|NC_006823\|CRT	518-558	41	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	518-558	0	1.0
NC_006823_1	1.10\|84\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	84-116	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	84-116	0	1.0
NC_006823_1	1.11\|146\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	146-178	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	146-178	0	1.0
NC_006823_1	1.12\|208\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	208-240	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	208-240	0	1.0
NC_006823_1	1.13\|270\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	270-302	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	270-302	0	1.0
NC_006823_1	1.14\|332\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	332-364	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	332-364	0	1.0
NC_006823_1	1.15\|394\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	394-426	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	394-426	0	1.0
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	456-488	0	1.0
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4723-4755	0	1.0
NC_006823_1	1.17\|518\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	518-550	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	518-550	0	1.0
NC_006823_2	2.1\|4032\|33\|NC_006823\|CRISPRCasFinder,CRT	4032-4064	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4032-4064	0	1.0
NC_006823_2	2.2\|4094\|33\|NC_006823\|CRISPRCasFinder,CRT	4094-4126	33	NZ_CP023440	Thauera sp. K11 plasmid pTX1, complete sequence	35206-35238	0	1.0
NC_006823_2	2.2\|4094\|33\|NC_006823\|CRISPRCasFinder,CRT	4094-4126	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4094-4126	0	1.0
NC_006823_2	2.3\|4156\|39\|NC_006823\|CRISPRCasFinder,CRT	4156-4194	39	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4156-4194	0	1.0
NC_006823_2	2.4\|4224\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4224-4256	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4224-4256	0	1.0
NC_006823_2	2.5\|4286\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4286-4318	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4286-4318	0	1.0
NC_006823_2	2.6\|4348\|34\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4348-4381	34	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4348-4381	0	1.0
NC_006823_2	2.7\|4411\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4411-4443	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4411-4443	0	1.0
NC_006823_2	2.8\|4473\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4473-4505	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4473-4505	0	1.0
NC_006823_2	2.9\|4535\|34\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4535-4568	34	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4535-4568	0	1.0
NC_006823_2	2.10\|4598\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4598-4630	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4598-4630	0	1.0
NC_006823_2	2.11\|4660\|34\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4660-4693	34	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4660-4693	0	1.0
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	456-488	0	1.0
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4723-4755	0	1.0
NC_006823_2	2.13\|4785\|33\|NC_006823\|CRISPRCasFinder,CRT	4785-4817	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4785-4817	0	1.0
NC_006823_2	2.14\|4847\|33\|NC_006823\|CRISPRCasFinder,CRT	4847-4879	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	4847-4879	0	1.0
NC_006823_1	1.17\|518\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	518-550	33	NC_006823	Aromatoleum aromaticum EbN1 plasmid 1, complete sequence	19983-20015	6	0.818
NC_006823_2	2.10\|4598\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4598-4630	33	MN284893	Mycobacterium phage LilMcDreamy, complete genome	69964-69996	7	0.788
NC_006823_2	2.8\|4473\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4473-4505	33	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	423904-423936	8	0.758
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1124636-1124668	9	0.727
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1124643-1124675	9	0.727
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1052201-1052233	9	0.727
NC_006823_1	1.16\|456\|33\|NC_006823\|PILER-CR,CRISPRCasFinder	456-488	33	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1009332-1009364	9	0.727
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1124636-1124668	9	0.727
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1124643-1124675	9	0.727
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1052201-1052233	9	0.727
NC_006823_2	2.12\|4723\|33\|NC_006823\|CRISPRCasFinder,CRT,PILER-CR	4723-4755	33	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1009332-1009364	9	0.727

1. spacer 1.1|22|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tgccttgcggcaagagctcacgatctcgacgaggtgttccc	CRISPR spacer
tgccttgcggcaagagctcacgatctcgacgaggtgttccc	Protospacer
*****************************************

2. spacer 1.2|84|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtcaggtctgcaacaaagatcaaccctactcggtgttccc	CRISPR spacer
cgtcaggtctgcaacaaagatcaaccctactcggtgttccc	Protospacer
*****************************************

3. spacer 1.3|146|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggctgcgaggatggcagcaacccgcatttcagtgtgttccc	CRISPR spacer
ggctgcgaggatggcagcaacccgcatttcagtgtgttccc	Protospacer
*****************************************

4. spacer 1.4|208|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcttttttgggtcttgctgtttgcgcggctggtgttccc	CRISPR spacer
tgtcttttttgggtcttgctgtttgcgcggctggtgttccc	Protospacer
*****************************************

5. spacer 1.5|270|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggccgacgttcggtcaagaggctggacccgtccgtgttccc	CRISPR spacer
ggccgacgttcggtcaagaggctggacccgtccgtgttccc	Protospacer
*****************************************

6. spacer 1.6|332|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

caagtaacgacacgcccaccagtcgcgcccccggtgttccc	CRISPR spacer
caagtaacgacacgcccaccagtcgcgcccccggtgttccc	Protospacer
*****************************************

7. spacer 1.7|394|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

aatgccctcttgcgtctcacgacgttcgaggccgtgttccc	CRISPR spacer
aatgccctcttgcgtctcacgacgttcgaggccgtgttccc	Protospacer
*****************************************

8. spacer 1.8|456|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgcgtgttccc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgcgtgttccc	Protospacer
*****************************************

9. spacer 1.8|456|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgcgtgttccc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgcgtgttccc	Protospacer
*****************************************

10. spacer 1.9|518|41|NC_006823|CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggaacgagccttctccatgccccctccggcgtgttccc	CRISPR spacer
ggtggaacgagccttctccatgccccctccggcgtgttccc	Protospacer
*****************************************

11. spacer 1.10|84|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtcaggtctgcaacaaagatcaaccctactcg	CRISPR spacer
cgtcaggtctgcaacaaagatcaaccctactcg	Protospacer
*********************************

12. spacer 1.11|146|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggctgcgaggatggcagcaacccgcatttcagt	CRISPR spacer
ggctgcgaggatggcagcaacccgcatttcagt	Protospacer
*********************************

13. spacer 1.12|208|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcttttttgggtcttgctgtttgcgcggctg	CRISPR spacer
tgtcttttttgggtcttgctgtttgcgcggctg	Protospacer
*********************************

14. spacer 1.13|270|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggccgacgttcggtcaagaggctggacccgtcc	CRISPR spacer
ggccgacgttcggtcaagaggctggacccgtcc	Protospacer
*********************************

15. spacer 1.14|332|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

caagtaacgacacgcccaccagtcgcgcccccg	CRISPR spacer
caagtaacgacacgcccaccagtcgcgcccccg	Protospacer
*********************************

16. spacer 1.15|394|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

aatgccctcttgcgtctcacgacgttcgaggcc	CRISPR spacer
aatgccctcttgcgtctcacgacgttcgaggcc	Protospacer
*********************************

17. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgc	Protospacer
*********************************

18. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgc	Protospacer
*********************************

19. spacer 1.17|518|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggaacgagccttctccatgccccctccggc	CRISPR spacer
ggtggaacgagccttctccatgccccctccggc	Protospacer
*********************************

20. spacer 2.1|4032|33|NC_006823|CRISPRCasFinder,CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggttatgatgatgtgtgtcggcgcgacggtggc	CRISPR spacer
ggttatgatgatgtgtgtcggcgcgacggtggc	Protospacer
*********************************

21. spacer 2.2|4094|33|NC_006823|CRISPRCasFinder,CRT matches to NZ_CP023440 (Thauera sp. K11 plasmid pTX1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtgtcgcgtttgcggacgcggtccccgtcgag	CRISPR spacer
tgtgtcgcgtttgcggacgcggtccccgtcgag	Protospacer
*********************************

22. spacer 2.2|4094|33|NC_006823|CRISPRCasFinder,CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtgtcgcgtttgcggacgcggtccccgtcgag	CRISPR spacer
tgtgtcgcgtttgcggacgcggtccccgtcgag	Protospacer
*********************************

23. spacer 2.3|4156|39|NC_006823|CRISPRCasFinder,CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaagcactgaccccccgcgtttctcgggtcggcaggc	CRISPR spacer
ttgaagcactgaccccccgcgtttctcgggtcggcaggc	Protospacer
***************************************

24. spacer 2.4|4224|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gaacgtggttcgagtcgcattgagcaagctctt	CRISPR spacer
gaacgtggttcgagtcgcattgagcaagctctt	Protospacer
*********************************

25. spacer 2.5|4286|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gttgtgcagaacgctacggctacacgcatgacc	CRISPR spacer
gttgtgcagaacgctacggctacacgcatgacc	Protospacer
*********************************

26. spacer 2.6|4348|34|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tgagctgacctagtagcgctagcacctattcgaa	CRISPR spacer
tgagctgacctagtagcgctagcacctattcgaa	Protospacer
**********************************

27. spacer 2.7|4411|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gtagctgagggggtgagtacaccgtcgatctcg	CRISPR spacer
gtagctgagggggtgagtacaccgtcgatctcg	Protospacer
*********************************

28. spacer 2.8|4473|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

cgcggaaggggtcggagttgaacaccatcgcga	CRISPR spacer
cgcggaaggggtcggagttgaacaccatcgcga	Protospacer
*********************************

29. spacer 2.9|4535|34|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

tatgggcttctattgcggcgcgtcgagcgtcact	CRISPR spacer
tatgggcttctattgcggcgcgtcgagcgtcact	Protospacer
**********************************

30. spacer 2.10|4598|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggccgccgagttggtcgggtcgctccagaagcg	CRISPR spacer
ggccgccgagttggtcgggtcgctccagaagcg	Protospacer
*********************************

31. spacer 2.11|4660|34|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcgcgtcccagcccgttacgtcaccagctcctc	CRISPR spacer
gtcgcgtcccagcccgttacgtcaccagctcctc	Protospacer
**********************************

32. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgc	Protospacer
*********************************

33. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gatcacacgccgctcgattggatcgtcatctgc	Protospacer
*********************************

34. spacer 2.13|4785|33|NC_006823|CRISPRCasFinder,CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gatgtacaaactcatccaggcgtcggtcaaatt	CRISPR spacer
gatgtacaaactcatccaggcgtcggtcaaatt	Protospacer
*********************************

35. spacer 2.14|4847|33|NC_006823|CRISPRCasFinder,CRT matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gacttgctgtaactgccctcgaaggcgaatgtt	CRISPR spacer
gacttgctgtaactgccctcgaaggcgaatgtt	Protospacer
*********************************

36. spacer 1.17|518|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NC_006823 (Aromatoleum aromaticum EbN1 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.818

ggtggaacgagccttctccatgccccctccggc	CRISPR spacer
agcaggacgaactttctccatgccccctccggc	Protospacer
.*..*.****.*.********************

37. spacer 2.10|4598|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to MN284893 (Mycobacterium phage LilMcDreamy, complete genome) position: , mismatch: 7, identity: 0.788

ggccgccgagttggtcgggtcgctccagaagcg-	CRISPR spacer
cgccgccgaggtggtcgggccgct-cagctacga	Protospacer
 ********* ********.**** ***  .**

38. spacer 2.8|4473|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcggaaggggtcggagttgaacaccatcgcga	CRISPR spacer
ggcgctcggggtcggagatgaacaccaccgcct	Protospacer
 ***   ********** *********.***

39. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

40. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

41. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

42. spacer 1.16|456|33|NC_006823|PILER-CR,CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

43. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

44. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

45. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

46. spacer 2.12|4723|33|NC_006823|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gatcacacgccgctcgattggatcgtcatctgc	CRISPR spacer
gccaacacgccgcccgactggatcgtcaattcg	Protospacer
* . *********.***.********** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

109344 : 145231

Vibrio_phage(13.33%)

integrase,transposase

attL 108481:108540|attR 142871:145355

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
108481:108540	attL	NA	NA	NA	NA
WP_011254726.1\|109344_110841_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_041647825.1\|110877_111294_-	hypothetical protein	NA	NA	NA	NA
WP_011254786.1\|111480_113202_+	DUF4942 domain-containing protein	A0A2I7RNS1	Vibrio_phage	2.9e-13	42.3
WP_011254785.1\|113254_113674_+	hypothetical protein	A0A2R3ZZK1	Microbacterium_phage	4.5e-21	44.4
WP_157866773.1\|113678_114281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011254783.1\|114284_114701_-	hypothetical protein	NA	NA	NA	NA
WP_011254782.1\|114737_115217_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	1.5e-23	43.6
WP_011254781.1\|115231_116512_-\|transposase	transposase	A0A068A1P5	Thermus_phage	3.2e-41	32.9
WP_011254780.1\|116548_116998_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	4.5e-19	42.9
WP_085938689.1\|117350_117509_+	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_011254777.1\|117704_118379_+\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	8.1e-12	30.0
WP_041647827.1\|118412_118616_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011254776.1\|118691_118913_+	hypothetical protein	NA	NA	NA	NA
WP_041647828.1\|118930_119152_+	hypothetical protein	NA	NA	NA	NA
WP_041647830.1\|119166_119412_+	hypothetical protein	NA	NA	NA	NA
WP_011254773.1\|119431_119839_+	hypothetical protein	NA	NA	NA	NA
WP_157866774.1\|119882_120113_+	hypothetical protein	NA	NA	NA	NA
WP_157866785.1\|120145_120490_+	hypothetical protein	NA	NA	NA	NA
WP_011254769.1\|120810_121371_+	hypothetical protein	NA	NA	NA	NA
WP_041647833.1\|121388_121580_+	hypothetical protein	NA	NA	NA	NA
WP_011254767.1\|121589_121868_+	hypothetical protein	NA	NA	NA	NA
WP_011254766.1\|121913_122138_+	hypothetical protein	NA	NA	NA	NA
WP_011254765.1\|122157_122367_+	hypothetical protein	NA	NA	NA	NA
WP_011254764.1\|122394_122622_+	hypothetical protein	NA	NA	NA	NA
WP_011254763.1\|122634_123051_+	hypothetical protein	NA	NA	NA	NA
WP_011254762.1\|123106_123253_+	hypothetical protein	NA	NA	NA	NA
WP_011254761.1\|123270_123483_+	hypothetical protein	NA	NA	NA	NA
WP_011254760.1\|123472_123910_+	hypothetical protein	NA	NA	NA	NA
WP_041647835.1\|123915_124137_+	hypothetical protein	NA	NA	NA	NA
WP_011254759.1\|124232_124595_+	hypothetical protein	A0A0K2FHI0	Enterobacter_phage	7.9e-06	35.2
WP_011254758.1\|124621_124867_+	hypothetical protein	NA	NA	NA	NA
WP_011254757.1\|124889_125285_+	hypothetical protein	NA	NA	NA	NA
WP_157866786.1\|125545_126523_-\|transposase	IS5-like element ISAzo39 family transposase	NA	NA	NA	NA
WP_011254755.1\|126604_126997_-	hypothetical protein	NA	NA	NA	NA
WP_011254754.1\|127132_127657_-	hypothetical protein	A0A127KN51	Pseudomonas_phage	6.2e-36	43.2
WP_011254753.1\|127769_128360_-	hypothetical protein	NA	NA	NA	NA
WP_083783040.1\|128356_128842_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_011254750.1\|129032_129977_-	recombination-associated protein RdgC	B5AX95	Iodobacteriophage	4.4e-16	26.7
WP_011254749.1\|130159_130885_+	DUF1071 domain-containing protein	X2CXM9	Lactobacillus_phage	1.4e-25	44.4
WP_011254748.1\|130969_131608_+	hypothetical protein	NA	NA	NA	NA
WP_011254747.1\|131680_132103_-	hypothetical protein	NA	NA	NA	NA
WP_011254746.1\|132099_132528_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_048704501.1\|132524_133007_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011254744.1\|133140_133734_+	plasmid coded EDTA-resistant nuclease	A0A1B2LRT6	Wolbachia_phage	1.2e-06	27.3
WP_011254743.1\|133730_133964_+	hypothetical protein	NA	NA	NA	NA
WP_011254742.1\|134087_135071_+	ParB/RepB/Spo0J family partition protein	I6NP86	Burkholderia_phage	6.0e-40	33.4
WP_011254741.1\|135076_135481_+	hypothetical protein	NA	NA	NA	NA
WP_011254740.1\|135485_135854_+	hypothetical protein	NA	NA	NA	NA
WP_011254739.1\|135929_136394_-	RDD family protein	NA	NA	NA	NA
WP_041647841.1\|136492_136726_+	WGR domain-containing protein	NA	NA	NA	NA
WP_011254737.1\|136740_137565_-	hypothetical protein	NA	NA	NA	NA
WP_011254736.1\|137561_138935_-	replicative DNA helicase	O80281	Escherichia_phage	1.0e-85	42.5
WP_041647843.1\|138931_139861_-	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_157866775.1\|141116_141992_+	SAM-dependent methyltransferase	A0A1E1GDT2	Vibrio_phage	4.3e-21	28.5
WP_041647847.1\|142272_142470_+	hypothetical protein	NA	NA	NA	NA
WP_011254729.1\|142584_142791_+	hypothetical protein	NA	NA	NA	NA
WP_011254727.1\|142940_143738_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.3e-32	33.3
WP_011254726.1\|143734_145231_-\|transposase	IS21 family transposase	NA	NA	NA	NA
142871:145355	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006824

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36336 : 156367

102

Escherichia_phage(13.79%)

integrase,transposase

attL 136062:136097|attR 153938:153973

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011255061.1\|36336_37323_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_083783048.1\|37496_37640_-	hypothetical protein	NA	NA	NA	NA
WP_011255059.1\|38331_39630_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041647973.1\|39745_40090_+	hypothetical protein	NA	NA	NA	NA
WP_011255058.1\|40086_40854_-	hypothetical protein	NA	NA	NA	NA
WP_011255057.1\|40866_42450_-	nitroreductase family protein	NA	NA	NA	NA
WP_157866791.1\|43176_43626_+	metal-dependent phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	4.9e-13	39.0
WP_157866792.1\|43699_43867_+	hypothetical protein	NA	NA	NA	NA
WP_041647974.1\|43868_44081_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_011255055.1\|44077_44800_+\|integrase	integrase, partial gene	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.4e-24	39.4
WP_049780414.1\|44912_46307_+	Fic family protein	NA	NA	NA	NA
WP_011255051.1\|47372_50978_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.9e-36	37.6
WP_041647976.1\|50982_51222_-	hypothetical protein	NA	NA	NA	NA
WP_011255049.1\|51224_53309_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	3.1e-38	30.6
WP_011255048.1\|53323_53863_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_011255047.1\|53859_55764_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_011255046.1\|55760_57983_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_011255044.1\|58017_58392_-	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_011255043.1\|58767_59175_+	TraK family protein	NA	NA	NA	NA
WP_011255042.1\|59174_59900_+	conjugal transfer protein TraL	NA	NA	NA	NA
WP_011255041.1\|59899_60334_+	conjugal transfer protein TraM	NA	NA	NA	NA
WP_011255039.1\|61438_62014_-	hypothetical protein	NA	NA	NA	NA
WP_157866803.1\|62048_63971_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_011255037.1\|64215_65196_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_173361297.1\|65426_66218_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011255035.1\|66350_67571_-	CoA transferase	NA	NA	NA	NA
WP_011255034.1\|67567_68755_-	CoA transferase	NA	NA	NA	NA
WP_011255033.1\|68782_70366_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_041647980.1\|70415_71015_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_011255031.1\|71350_72274_-	DMT family transporter	NA	NA	NA	NA
WP_011255030.1\|72466_73660_-	porin	NA	NA	NA	NA
WP_011255029.1\|74090_75605_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_011255028.1\|75665_76475_-	ABC transporter permease	NA	NA	NA	NA
WP_011255027.1\|76471_77329_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-29	34.6
WP_011255026.1\|77325_78372_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011255025.1\|78909_80493_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_041647982.1\|80540_81140_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_173361298.1\|81578_82385_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_011255022.1\|82612_83182_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_011236184.1\|83371_84730_-\|transposase	IS1182-like element ISAzo1 family transposase	NA	NA	NA	NA
WP_011255021.1\|84847_85291_-\|transposase	transposase	NA	NA	NA	NA
WP_011236249.1\|85954_87043_+\|transposase	IS21-like element ISAzo17 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-74	44.0
WP_011236051.1\|87039_87819_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-77	57.1
WP_041647985.1\|87958_88279_+	HIT family protein	D7NW73	Streptomyces_phage	5.7e-16	41.6
WP_049780415.1\|88275_89331_+	HNH endonuclease	A0A2I2MUI7	uncultured_Caudovirales_phage	1.0e-32	38.4
WP_157866793.1\|89331_90063_+	SOS response-associated peptidase family protein	C7BGE4	Burkholderia_phage	3.2e-30	38.1
WP_011255018.1\|90112_90496_-	H-NS histone family protein	NA	NA	NA	NA
WP_011255017.1\|90635_91670_+\|transposase	IS630-like element ISAzo32 family transposase	NA	NA	NA	NA
WP_011255016.1\|91891_92164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041647987.1\|92249_92495_-	hypothetical protein	NA	NA	NA	NA
WP_157866555.1\|92796_93531_+	DNA/RNA non-specific endonuclease	H6X497	Enterobacteria_phage	1.9e-14	29.6
WP_011255007.1\|93652_95008_+\|transposase	IS1182-like element ISAzo2 family transposase	NA	NA	NA	NA
WP_041645857.1\|95323_96202_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	3.0e-22	28.8
WP_011236918.1\|96211_97411_+\|transposase	IS91-like element ISAzo26 family transposase	NA	NA	NA	NA
WP_011255014.1\|97917_98808_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011254967.1\|98770_99505_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.2e-120	91.0
WP_157866804.1\|100321_100645_+	hypothetical protein	NA	NA	NA	NA
WP_011254969.1\|100821_101274_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_162014376.1\|101393_101558_+	hypothetical protein	NA	NA	NA	NA
WP_011254970.1\|101547_103632_+	recombinase family protein	NA	NA	NA	NA
WP_083783045.1\|104462_104963_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011255009.1\|104959_105814_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236108.1\|105862_107101_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	4.2e-06	26.7
WP_011236107.1\|107097_108042_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236106.1\|108038_109037_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	2.7e-11	32.7
WP_041647993.1\|109196_109397_+\|integrase	integrase	NA	NA	NA	NA
WP_011255008.1\|109734_114192_+	hypothetical protein	NA	NA	NA	NA
WP_011255007.1\|114279_115635_-\|transposase	IS1182-like element ISAzo2 family transposase	NA	NA	NA	NA
WP_011255006.1\|115723_116551_+	hypothetical protein	NA	NA	NA	NA
WP_011255005.1\|116807_117299_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011255004.1\|117622_122524_+	hypothetical protein	NA	NA	NA	NA
WP_011255002.1\|123096_124797_-\|transposase	IS1634-like element ISAzo6 family transposase	NA	NA	NA	NA
WP_011255001.1\|125220_126177_+\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	1.5e-11	32.2
WP_011255000.1\|126173_127148_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011237305.1\|127413_129114_+\|transposase	IS1634-like element ISAzo6 family transposase	NA	NA	NA	NA
WP_011254999.1\|129194_130037_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	7.2e-10	26.2
WP_011236106.1\|129991_130990_-\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	2.7e-11	32.7
WP_011236107.1\|130986_131931_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236108.1\|131927_133166_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	4.2e-06	26.7
WP_011254998.1\|133214_134099_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041647998.1\|134335_134536_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011254997.1\|135131_135479_-	hypothetical protein	NA	NA	NA	NA
136062:136097	attL	NA	NA	NA	NA
WP_011236050.1\|136147_137236_+\|transposase	IS21-like element ISAzo17 family transposase	A0A2L1IVA1	Escherichia_phage	6.4e-75	44.3
WP_011236051.1\|137232_138012_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-77	57.1
WP_011254995.1\|138553_139030_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	2.6e-20	45.8
WP_011254994.1\|139026_140319_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.1e-97	46.8
WP_011254993.1\|140445_141489_-	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	4.2e-07	26.1
WP_011254992.1\|141488_142256_-	ParA family protein	A0A1V0DZZ0	Clostridioides_phage	3.7e-05	23.2
WP_041648054.1\|142252_142558_-	transcriptional regulator	NA	NA	NA	NA
WP_041648000.1\|143336_144296_-	DNA-binding protein	NA	NA	NA	NA
WP_041648002.1\|144340_144730_-	hypothetical protein	NA	NA	NA	NA
WP_011236000.1\|144804_145602_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.9e-32	33.3
WP_011235999.1\|145598_147095_-\|transposase	IS21-like element ISAZo16 family transposase	NA	NA	NA	NA
WP_157866795.1\|147694_147922_-	hypothetical protein	NA	NA	NA	NA
WP_011254986.1\|148831_149344_-	hypothetical protein	NA	NA	NA	NA
WP_011254985.1\|149435_150092_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_011254984.1\|150084_150744_-	hypothetical protein	NA	NA	NA	NA
WP_049780416.1\|151087_151540_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.7e-11	34.4
WP_157866796.1\|151739_152903_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236214.1\|154057_154363_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
153938:153973	attR	NA	NA	NA	NA
WP_011236213.1\|154362_154722_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.3e-12	35.5
WP_011236212.1\|154750_156367_+\|transposase	IS66-like element ISAzo19 family transposase	S5VTD3	Leptospira_phage	6.6e-36	25.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_006513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_006513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006513_1

793662-793756

Orphan

Consensus_repeat	Method
GTGCCGTTACAGGCGTTACAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_006513_1

>merge|NC_006513|1|793662-793756|CRISPRCasFinder
GTGCCGTTACAGGCGTTACAGCCGTTACAGCCAGTAGCAGCGCGGATTCTGGCGTAACGTCAGGCGTAACGGCTGCCGTTACAGGCGTTACAGCC

>NC_006513|1|1|793662-793756|CRISPRCasFinder
GTGCCGTTACAGGCGTTACAGCC	GTTACAGCCAGTAGCAGCGCGGATTCTGGCGTAACGTCAGGCGTAACGG
CTGCCGTTACAGGCGTTACAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006513.1\|WP_011236590.1\|801294_802530_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_006513.1\|WP_011236577.1\|789532_789997_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NC_006513.1\|WP_011236584.1\|795705_796590_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NC_006513.1\|WP_011236587.1\|798311_799880_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_006513.1\|WP_041645685.1\|787094_788594_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_006513.1\|WP_041645696.1\|800792_801023_-\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	unknown	unknown	gnl\|CDD\|240606
NC_006513.1\|WP_041645698.1\|801019_801298_-\|DUF4258-domain-containing-protein	unknown	unknown	gnl\|CDD\|379454
NC_006513.1\|WP_011235973.1\|797554_798289_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_006513.1\|WP_041645689.1\|796586_796826_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_011236579.1\|790965_792303_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_006513.1\|WP_041645694.1\|800085_800658_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_157866568.1\|792871_793069_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_041645691.1\|796839_797067_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_006513.1\|WP_041646897.1\|783959_786047_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_006513.1\|WP_011236571.1\|782610_783402_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_006513.1\|WP_041645683.1\|786046_786967_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_006513.1\|WP_011236578.1\|789993_790965_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NC_006513.1\|WP_041646899.1\|793783_795517_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|336282
NC_006513.1\|WP_011236576.1\|788634_789483_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226910
NC_006513.1\|WP_011236572.1\|783410_783944_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354

Protein	Function_ID	Function_description	E-value
NC_006513.1\|WP_011236577.1\|789532_789997_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	4.4689e-72
NC_006513.1\|WP_011236584.1\|795705_796590_-\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.60402e-59
NC_006513.1\|WP_011236587.1\|798311_799880_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.24528e-26
NC_006513.1\|WP_041645685.1\|787094_788594_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	1.74955e-169
NC_006513.1\|WP_041645696.1\|800792_801023_-\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	gnl\|CDD\|240606	cd12870, MqsA, antitoxin MqsA for MqsR toxin. This family includes domains similar to the antitoxin MqsA that binds motility quorum-sensing regulator MqsR, a toxin that is highly upregulated in persisters (dormant cells found in biofilms that are a source of antibiotic resistance), thus forming a unique toxin:antitoxin (TA) pair. MqsA neutralizes MsqR toxicity. It binds its own promoter as well as those of genes important for E. coli physiology, such as mcbR and spy. It also binds zinc and has been shown to coordinate DNA via its C-terminal domain. This family also includes the B. subtilis YokU protein, which is functionally uncharacterized.	3.63626e-20
NC_006513.1\|WP_041645698.1\|801019_801298_-\|DUF4258-domain-containing-protein	gnl\|CDD\|379454	pfam14076, DUF4258, Domain of unknown function (DUF4258). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length.	5.55424e-22
NC_006513.1\|WP_011235973.1\|797554_798289_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	8.03543e-69
NC_006513.1\|WP_011236579.1\|790965_792303_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_006513.1\|WP_011236590.1\|801294_802530_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.97003e-32
NC_006513.1\|WP_041645691.1\|796839_797067_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.80798e-10
NC_006513.1\|WP_041646897.1\|783959_786047_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_006513.1\|WP_011236571.1\|782610_783402_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.47695e-47
NC_006513.1\|WP_041645683.1\|786046_786967_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_006513.1\|WP_011236578.1\|789993_790965_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.31896e-141
NC_006513.1\|WP_041646899.1\|793783_795517_-\|DUF927-domain-containing-protein	gnl\|CDD\|336282	pfam06048, DUF927, Domain of unknown function (DUF927). Family of bacterial proteins of unknown function. The C-terminal half of this family contains a P-loop motif. The N-terminal domain appears to have a unique fold, which contains three Helices and two strands. Structural analyses show that helicases containing this domain form a hexameric ring with a positively charged central pore threading a single DNA strand through suggestive of a replicative function for this helicase.	4.09541e-127
NC_006513.1\|WP_011236576.1\|788634_789483_-\|CBS-domain-containing-protein	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.65713e-118
NC_006513.1\|WP_011236572.1\|783410_783944_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	1.76344e-115

>NC_006513.1|WP_157866568.1|792871_793069_-|hypothetical-protein
MQNFPRTVTGALNRLAHREGLRHAEAVKSRLAAELARLKGNGATHAEMLAHLERQTHEAGGRSNL
>NC_006513.1|WP_011236579.1|790965_792303_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKKLYIRTFGCQMNEYDSDKMADVLGASEELVKTDNPEEADVILFNTCSVREKAQERVFHDLGRVKHLKQSNPNLIIGVGGCVASQEGDAIVARAPYVDVVFGPQTLHRLPQLIAERRHSGRSQVDISFPEIEKFDNMPPARVEGASAFVSIMEGCSKYCTFCVVPYTRGEEVSRPLDDVLAEVAGLAGQGVREVTLLGQNVNAWRGEITRDGGEQGDFAFLLECVAEIPGIERLRFTTSHPREMTQRVFDAYAKIPKLVSHLHLPVQSGSDRILAAMKRGYSVLEFKSVVRKLRAARPDLSLSSDFIVGFPGETEEDFEKTMKLIDEVGFDASFSFVYSPRPGTPASDLADPVPQETKLRWLARLQKRIDQQAQAISQAMVGRVERALVEGLSRKDATELAARTGNNRVVNFVGNPRLIGQFVDLTITAALPHSLRGEIVTTET
>NC_006513.1|WP_011236578.1|789993_790965_-|PhoH-family-protein
MGRPTEVVLEPVDNERLANLCGALDENLRQIETAYDVTIARRGECFTLQGSPAQMQLAAKALGEFYEQADEHLSVDDIQLGLIELANRRQSDQPTPALLTRKTELHGRTPRQIDYLRNIQAHDITFGIGPAGTGKTYLAVASAVDAFERQLVERIILTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFDRVAKLFERGSIEIAPLAFMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGIGAKAVVTGDLTQIDLPRGNRSGLLEAREVLATVRGIAFTEFQKEDVVRHPLVARIVEAYDNQTARDAQAALARKS
>NC_006513.1|WP_011236577.1|789532_789997_-|rRNA-maturation-RNase-YbeY
MSADTETASSRLALTVQRAIGAENRARSPTSALIRRWALAALRGDAEMTVRLVGEAEGRRLNRDYRGKDYATNVLTFVYDESERLAGDLVLCVPVVAREAAEQGKPLEAHFAHLIVHGMLHLQGFDHEAPDEAEEMETLETRVLATLGYPNPYA
>NC_006513.1|WP_011236576.1|788634_789483_-|CBS-domain-containing-protein
MDSLPGKPLSLLERLSALLSREPEDRGELMALLHSAFERNLLDADALSIIEGTLQMSDLQVSDVMVPRSQMEVIGVDDAMDKIASFVIETGHSRFPTVGESKDDVVGIFLAKDLLRYFVGQEFELRDALRPAVFVPETKRLNVLLRDFRVSRNHMAIVVDEYGGVAGLVTIEDVLEQIVGEIEDEYDSDLAGDNIRLMQDGRYRVKATTEIADFNTAFATNFSDADVDTIGGLVIRALGRLPQRGDTVILADVKVQVLRADSRRVYTLLVEHAVPVADARQA
>NC_006513.1|WP_041645685.1|787094_788594_-|apolipoprotein-N-acyltransferase
MVRIVMLAALAGGASVFAFAPFGIFPLAFASLAVLAGSLQRVPRARGGFVVGFAWGFGAFLAGVSWLYVALHRYGGMPMPLAGFAIALFCAYLALFPALVGGLFVRWRRGGPFRQAALFAGLWVGAEVLRGWLFTGFPWLAIGYSQTPPSPLAGFAPLIGVYGVGGLLAFAAALAAVAPWRRLRGAAAAGLAIVGLGVAGFGLAQVAWTRPVGEPVEVALIQTNIEQGLKWRPERLADWLQTNVRLAREHAADLVVLPETTLPLLADRLPEGYLDELARDVRAAGGNLVLGVFLRDAQGGIYNAALSIGASPSQTYAKRHLVPFGEYSPPLFGWFYDLVDIPMSDQTRGAPDQAPMRLGEQRVAVNVCYEDLFGRELIRSLPEATLMLNISNLAWYGDSFAQPQHLQIARMRALETGRPMLRSTNTGMTAVVRPDGSVSDVLPPFTQGALRVPVQGYAGLTPYARWGDRAAMLLALVAAGVGVAGAPRQPAGSLKTVSG
>NC_006513.1|WP_041645683.1|786046_786967_-|glycine--tRNA-ligase-subunit-alpha
MSPHKPTFQQVILTLQQYWGERGCVLLQPYDLEVGAGTSHTATFLRAIGPEPWNAAYVQPSRRPKDGRYGENPNRLQHYYQFQVVLKPSPLNIQELYLDSLRALGIDTNAHDIRFVEDDWENPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGLDCKPVLGEITYGLERLAMYLQGVENVYDLVWAVYPDGSKVTYGDVFHQNEVEQSTYNFEHSNVDFFFSLFGNYEAEAKRLMEAGLALPAYEMVLKAAHSFNMLDARGAISVTERAAYIGRIRNLSRAVAQAYSASRESLGFPMLNQNPSQEAA
>NC_006513.1|WP_041646897.1|783959_786047_-|glycine--tRNA-ligase-subunit-beta
MTTATVLVELLTEELPPKALPRLGETFAAKVFEGLKARDLVAEDRGFRCFAAPRRLAVTVPTVRAAAPSREVTEKIMPVQVALDAEGRPTPALLKKLQAKGIAPEAVASFERRVDGKAEALFYTHLEPGAALDDVLAAIVQEAVKALPIPKLMRWGAGDAQFVRPVHKLAMLHGARVVPGRVLDLDAGRVTMGHRFMSRGEIELATAEAYEPTLLAEGKVIPDFAERRSNIERQLVATAQEQGASLGEYADLLDEVAALVEHPTVYVGEFELEFLAVPQECLILTMRANQKYFPLFDAAGKLLNRFLIVSNMRLADPSNIVAGNQRVVRPRLSDARFFFEQDRKHTLDSRLPRLAPVVYHNKLGSQLERVERLERLAGRIADRLHGDVAAASRAARLAKADLVTDMVGEFPELQGIMGRYYALNDGEGEVVADAVQSHYQPRFAGDTLPAGNTACAVALADKLDTLVGFFGIGQLPTGDKDPFGLRRAALGVLRILIETPLPLDLAALVGDAAEGFAPGLLTAADFESQLLDFMFERLRNLLREAGHAVDVVDAVLALHPTRIDLVPAKLDAVRVFRGLPEAEALAAANKRIVNILKKAEDELPEPDVALLQEQAEKALFHAVVEVAPLVHSHVANEDYTDALCALAGLRAAVDTFFDDVMVMVEEPLTRRNRLALLRQLAGLMNQVADLSRLSA
>NC_006513.1|WP_011236572.1|783410_783944_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINYDSDQFIKSPDEWKPIPGSLEAIARLNQWGWRVVIASNQSGIGRGLFGMDTLNAINEKMVRSLAQVGGRLDAIFFCPHAADSTCNCRKPKPGLFLQIADRFNVTLAGVPSVGDSLRDLQAGLEVGCKPYLVLTGKGLKTRDDPALPEGTLIYPDLATAVADLTA
>NC_006513.1|WP_011236571.1|782610_783402_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIVLRSLLFAIVLAIVTPPYAIFGMLTFPLPPHMRHRIITSWAPLVMWFVRHLLGIRYRVLGSDNIPSGPAVILSKHQSAWETMALQVIFPPLCFVLKRELLKVPFFGWGLAQIPGIAIDRAAGKDALTQVVEQGRARLAEGFWVVVFPEGTRVAPGTTRRYKPGGAWLAQKAGVPVVPVAHNAGEFWRRNAFLKYPGEITVSIGPALGPEGLDANEVNARAQLWIEAEMHRLFPHHYAAGAKRGDQPDSGVVAAERRGSGES
>NC_006513.1|WP_041646899.1|793783_795517_-|DUF927-domain-containing-protein
MPTVPEEERPCFRVHDGWTLLDTGRKLRPGVWHHGMSKPKKEEMPVPVDSWVCGPLHIEAQTFDGTGNNFGRLLRFKNTAGHWRAWAMPMELLRGDGSDLRGELLAMGLEIDPFARQSLARYLQERAPKKRVRCALQVGWCGNVFVLPDAVIGPDAGSVIFQSGERGHEEHGQAGTLDGWRSEIAARAVGNPLFLLALAAAFAGPLLKRTNTEGGGLHFVGDSSTGKTTILEAACSVWGGPGYRRSWRATANGMEGAAALFNDCLLALDEISECDPREVGAIVYSLGNGRGKQRASRTGAARAVTRWAAFIISTGERTIGTTMAEGGHRTKAGQAVRLLDLPAARRFGCFDDLHGMATGTALSDAIKRAATQHHGRAGRAFLDRLTHDGRDFAALLERFKALPAFNPPDTEGQDKRAAGRFALLALAGELATEYGITGWPEGAATEAAGTGFRAWRAMRGRGNDERRQILDRLAGFLERHGDSRFSDWTADGVMVRDRAGWWKPDDAGGRLYLFNADGLREALKGFDFKHALDLLEEAGVLPKANARGERAKAERIGGRVVKLYEVRADSLGGEHVS
>NC_006513.1|WP_011236584.1|795705_796590_-|toprim-domain-containing-protein
MNALDTIEAFRDAMRENRIVPPAVIEADGLLHRFHVEGDRRGTLNGWYSLHLDGRAAGVFGSWKTGLRSTWAADGKRMTDPERDAFAKLIEAARQKAQAERRAEHEARAKEARAEWDAAAPAGAAHPYLTAKGVKAHNLRQRAGLLIVPLFDAFGLLWNVQRIAPDGGKRFRPGRAGGLFSPVGDLTDPARLLICEGWATGATLHEESGLPALCAMNAGNLLPVAKAARAAWPAAELVICADNDRGTEGNPGVTAATAAANATGAALIVPQFPEGASGTDFNDLAALRRTVRAA
>NC_006513.1|WP_041645689.1|796586_796826_-|hypothetical-protein
MTQKTKGRTERHDPKQNDSRDSINVDPVVGWYSLGKASRTNRRPKRTWRHRSGGAINVDLAVLLILAAVAALLLAEGRL
>NC_006513.1|WP_041645691.1|796839_797067_-|helix-turn-helix-domain-containing-protein
MTTQNLQNLIAAGADLLDDKAAAAILDVSPGTLSVWRSTGRYALPFLKVGRKVRYRRADLLAWMESRTRATGATA
>NC_006513.1|WP_011235973.1|797554_798289_-|ATP-binding-protein
MLMQHSLQQLHALRLEGMARAFEEQLTQPAITALSFEERFAQLIDREILLRDGKRIDRLLKAARIKAAAACLEDVDYRAGRGLERSQIAALGTGQWIRHHQNCLITGPTGSGKTWLACALANAACRQGLAAYYVRLPRLFEELRIAHADGSFSRRLMQLARMDLIVIDDWGLAAPSAQERSDLLELLDDRVGTRSTVITSQLPIEHWHTYLGDPTFADAILDRVVHAAHKLALKGESMRRKEKA
>NC_006513.1|WP_011236587.1|798311_799880_-|IS21-family-transposase
MPAERIAMHKIRELLRLKYDCALSHERIARALSISKGVVAKYVKAAEECGRPWAELSAADEAELRRVLGVARRGRGASVANVPPDLAAVHQGLKRKNVTLALLWEEYVQTADGPSYQYSRFCDLYRAFARTLKRSMRQVHRAGEKLFIDYAGDTVPIVDADTGEISRAQIFVAVLGASSYTFACATATQSQADWLGSLARALAFIGGVPELVVPDNTRSLVGQADRYEPQLQRTTAEFAAHYGVAILPARPYKPQDKAKVEVGVQIVQRWILARLRHRRFFSLGELNEAIAALLEPLNTRAFRRLPGSRHEAFETLDRPALRPLPATAFQFAQWKRAKPNIDYHVEFDGHYYSVPYALAGQAVELRITASSIECFAAGRRVAVHARSHRPGVYSTLTEHMPASHQAHRQWSPGKLIAWGATVGPHTEQVVSHQLERMPHPEQGYRACLGLMRLGRQYGNERLEAAATRAVTLGAMRYRNVASILKSGLDRAPLPTPTPTAASQTELALPTVHENLRGARYYH
>NC_006513.1|WP_041645694.1|800085_800658_-|hypothetical-protein
MIETTYIRLERAAEMLGADTDTLLIAAYEGRVRLYGLLNQFRKAQKLEWDEDEEGNSFSYPVEEKQMWFWMVPIDRHGAGYLMQAGFACIAALSENDEKGRYWSECDWGERDPVKDRIPIAHVFLKRADVEGIRSKNTAPQPRAESEPPPPPDRSHVSDDLARVNQAARRWWGNVDKCDPSMRIPTQRDR
>NC_006513.1|WP_041645696.1|800792_801023_-|type-II-toxin-antitoxin-system-MqsA-family-antitoxin
MKCPICKHGETKPGTATVTLERGGMAVVFRAVPAEVCDNCGEAFHDEAVTAALLRQAEQAAAAGVEVDVRRFAAAA
>NC_006513.1|WP_041645698.1|801019_801298_-|DUF4258-domain-containing-protein
MRLIYRQHAVRRMFERGISTNDVAAALAGGRAIEDYPTDTPYPSCLWLGYAGARPLHVVYADNQDDGERIIVTVYEPDPALWMADFATRKKP
>NC_006513.1|WP_011236590.1|801294_802530_-|site-specific-integrase
MADDKTRFPFTKERLAALPTPDAGKRDTYHDTKTTGLQLRVSATGVKSFSVYRRLKAGQPERVTLGKFPAMTVEQARKAAALVNAEIESGANPAATKRAFKAEPTLTEFFAEYGTRHGEKKLAWPADVQRFRDYLQKPMGNKRLSEIDRAMIAKALSDAEKAGKSVATVRNIRALASGVFGKAVEWGRLDFNPAQGVKVAGKKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMHWHELDLAAGVWRIPRTKNGEPQTVTLCPEAVMILEARKDATGGGFVFPGTGRTGHVVEPKKAVERVMARAGIPYGRDVPNGATLHDLRRTLGSWQARTGASLAIIGKSLNHKSQQATAIYARLDLDPVRQSVNTATSAMLEAAGLKDGADVVRLPNKRSAA

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Crispr_ID: NC_006513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006513_2

1941465-1946917

TypeI

Consensus_repeat	Method
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRISPRCasFinder
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	PILER-CR

75 spacers

cas2,cas1,cas4,cas7,cas8c

The CRISPR arrays of NC_006513_2

>merge|NC_006513|2|1941465-1946917|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATCCACACCCCCCGTCACCGAGGGGCGATGCGGCTGCGCCTCGTCGGCGAGCAGGGTCCGGAACTGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCACCAAGATCAAGACGATCGGCAAGCTGCTGGACGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGTCGCAAAAGAGGACGACAACGGGCTGTACGTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAAGCGCGAGTTTTACCGGAGGTACGGCAGCGAAGCGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGTTCGGGTGGTTAGGCATCTCAGCGGTTGGCCGAAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGATCAGTTCGGCGGGGGGTTCATCCGCGAACTAGAGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTTCCTGAGCTTCCCTCCCACACGCTTACGCACGTAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTGTTGACGCAGTCCCACTGCACGCCATGCAGCACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATGTTCCCCGAGGGGCAGGTGGTCAAGTTCGACCTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTCACGGATGTCGCGGTAGTCGAACACCGGCAGGGGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCAATGCCGGCTGGGACAACCGCGGCGAACAGCTTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCTGGAACGCCTACCAGCAGATCAAGGACAACCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATCGTTCGAGTTCGTTCTGCGGCGTAGTCATATTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAAGCTGGCGCCCGCCTCTTTGCGCCTCAAGTCGCAAATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTGAGTGATGGCTGACAAAGACAAGAACGAATACCTTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCATGCACACGGTATTCACGGCATCCTCCCTGTCTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGGCAGGCCGGGCGGTGCGCATCGTCGAGCGGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTCCTGAACCCGGCTGACTGGGCGACGATGGAAACGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGGCGGCAGCAGTAAAAAGTCGAGCACGAATACGACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCTGCCTCGCCGCGGTGAAGCAGGCGATCAGGGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCGGACTGCGACGGAAAGGGGCGGACTGAGAAGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCGGATCAGCTTGATGTAGGCGTCGGTCCATCCCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGCCCGGCGAGCTTCGCCGACGCGGCGAACTTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCACGGTCACCAATGCCGGCGTTGCCGGGTAACCACTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCGAGGCTAAGGCGTATCTCGGCGTGCAGGACGTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTTGGCGCTTACGCCGTGATCGTGATTGCCGTCATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTGGGATCGGGCGCTCGACGACCTGCAACTGATGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGTCGGTCCATCCGGCGTCGGCGAGCACGAGCTTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCACGTGAGTTGTGCGTCGAGTTCGCTTGGCAGGTTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCGGCAGATCGCCGAGCACCGCGCCAAGCTCGAAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATTAGTTGCACCGACGCGAGCGCCGAGTCGACGTAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCACGGCGACCCGCTGCGGCCGGACCTCGATTACCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTTCGAGCAGTCCGGACGACACGCACGACCAGACCGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATGCGAGCGCCAGCGCCTTCACGGCCGAAGACGCCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCGACTGCCGAGCACCAGGCGCTGAAGACCGCCCACGACAAGCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTTCGCCGGTGCCTACCAGCGCGACGACACAGGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGGTGAGCGCGTCGGCGATGAAAATCGACTCGGGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCACCTGTTCGTTCCAACCCCTCATGACCCACCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGTTCGACTTGATGACCGACGCCGCTTATCACGGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGTCACCACGGTCACGCTCGACCCGGTGCTGCGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCCGCAATCCGCAACGGTGCGGAGAACGTCACCGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCTCGGCGCTCACGCCTCACCCTCGATCGGCGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCACGATCGTCGGCCACGACAACCACGGCAACTACACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCTGGCGACGGGTCGGTGGGAAGGGGGATCACATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGGAATTGGAGCGATCAGCACCGTAGCGCCCGACAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGTCATCAAGGCGGTGGTGCACCGGCAGATCGAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAGGCGACGATTGATGCCGCAGACGCAGCCCAACAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCCGGACGTACTGGCTCAGCGGCGCACGGTCGACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGGCATGAGCGACGCCGAGTGGGATTACCTGTACCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCTCGTCCATGTCCATGCACAGGACGATGTCGGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCGATAAGTACGACAAGGCGACGAAGCAGCGCAAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCATCTTTGTTACCACTAAGAGCGAGGACAGAAAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCGCCGAATGGTCGCCTACACCGCCGACTGGATCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGATGCTGCCCAGTGAAGAGACAAGCGCGACCGAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|2|2|1941465-1946917|CRISPRCasFinder
GTTTCAATCCACACCCCCCGTCACCGAGGGGCGATGC	GGCTGCGCCTCGTCGGCGAGCAGGGTCCGGAACTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACCAAGATCAAGACGATCGGCAAGCTGCTGGACGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTCGCAAAAGAGGACGACAACGGGCTGTACGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAAGCGCGAGTTTTACCGGAGGTACGGCAGCGAAGCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTTCGGGTGGTTAGGCATCTCAGCGGTTGGCCGAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGATCAGTTCGGCGGGGGGTTCATCCGCGAACTAGAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCCTGAGCTTCCCTCCCACACGCTTACGCACGTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGTTGACGCAGTCCCACTGCACGCCATGCAGCAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGTTCCCCGAGGGGCAGGTGGTCAAGTTCGACCTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCACGGATGTCGCGGTAGTCGAACACCGGCAGGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCAATGCCGGCTGGGACAACCGCGGCGAACAGCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCTGGAACGCCTACCAGCAGATCAAGGACAACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATCGTTCGAGTTCGTTCTGCGGCGTAGTCATATT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAAGCTGGCGCCCGCCTCTTTGCGCCTCAAGTCGCAAAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTGAGTGATGGCTGACAAAGACAAGAACGAATACCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CATGCACACGGTATTCACGGCATCCTCCCTGTCTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCAGGCCGGGCGGTGCGCATCGTCGAGCGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCCTGAACCCGGCTGACTGGGCGACGATGGAAACG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGCGGCAGCAGTAAAAAGTCGAGCACGAATACGAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTGCCTCGCCGCGGTGAAGCAGGCGATCAGGGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGGACTGCGACGGAAAGGGGCGGACTGAGAAGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCGGATCAGCTTGATGTAGGCGTCGGTCCATCCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGCCCGGCGAGCTTCGCCGACGCGGCGAACTTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CACGGTCACCAATGCCGGCGTTGCCGGGTAACCACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCGAGGCTAAGGCGTATCTCGGCGTGCAGGACGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTTGGCGCTTACGCCGTGATCGTGATTGCCGTCAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTGGGATCGGGCGCTCGACGACCTGCAACTGATG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGTCGGTCCATCCGGCGTCGGCGAGCACGAGCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CACGTGAGTTGTGCGTCGAGTTCGCTTGGCAGGTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGGCAGATCGCCGAGCACCGCGCCAAGCTCGAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATTAGTTGCACCGACGCGAGCGCCGAGTCGACGTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACGGCGACCCGCTGCGGCCGGACCTCGATTACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCGAGCAGTCCGGACGACACGCACGACCAGACCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGCGAGCGCCAGCGCCTTCACGGCCGAAGACGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCGACTGCCGAGCACCAGGCGCTGAAGACCGCCCACGACAAGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTTCGCCGGTGCCTACCAGCGCGACGACACAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGTGAGCGCGTCGGCGATGAAAATCGACTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACCTGTTCGTTCCAACCCCTCATGACCCACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTTCGACTTGATGACCGACGCCGCTTATCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTCACCACGGTCACGCTCGACCCGGTGCTGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCGCAATCCGCAACGGTGCGGAGAACGTCACCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCTCGGCGCTCACGCCTCACCCTCGATCGGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACGATCGTCGGCCACGACAACCACGGCAACTACAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCTGGCGACGGGTCGGTGGGAAGGGGGATCACAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGAATTGGAGCGATCAGCACCGTAGCGCCCGACA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCATCAAGGCGGTGGTGCACCGGCAGATCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGGCGACGATTGATGCCGCAGACGCAGCCCAACAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGGACGTACTGGCTCAGCGGCGCACGGTCGAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGCATGAGCGACGCCGAGTGGGATTACCTGTACC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCGTCCATGTCCATGCACAGGACGATGTCGGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCGATAAGTACGACAAGGCGACGAAGCAGCGCAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCATCTTTGTTACCACTAAGAGCGAGGACAGAAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGCCGAATGGTCGCCTACACCGCCGACTGGATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGCTGCCCAGTGAAGAGACAAGCGCGACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|2|1|1941465-1946917|CRT
GTTTCAATCCACACCCCCCGTCACCGAGGGGCGATGC	GGCTGCGCCTCGTCGGCGAGCAGGGTCCGGAACTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACCAAGATCAAGACGATCGGCAAGCTGCTGGACGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTCGCAAAAGAGGACGACAACGGGCTGTACGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAAGCGCGAGTTTTACCGGAGGTACGGCAGCGAAGCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTTCGGGTGGTTAGGCATCTCAGCGGTTGGCCGAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGATCAGTTCGGCGGGGGGTTCATCCGCGAACTAGAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCCTGAGCTTCCCTCCCACACGCTTACGCACGTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGTTGACGCAGTCCCACTGCACGCCATGCAGCAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGTTCCCCGAGGGGCAGGTGGTCAAGTTCGACCTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCACGGATGTCGCGGTAGTCGAACACCGGCAGGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCAATGCCGGCTGGGACAACCGCGGCGAACAGCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCTGGAACGCCTACCAGCAGATCAAGGACAACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATCGTTCGAGTTCGTTCTGCGGCGTAGTCATATT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAAGCTGGCGCCCGCCTCTTTGCGCCTCAAGTCGCAAAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTGAGTGATGGCTGACAAAGACAAGAACGAATACCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CATGCACACGGTATTCACGGCATCCTCCCTGTCTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCAGGCCGGGCGGTGCGCATCGTCGAGCGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCCTGAACCCGGCTGACTGGGCGACGATGGAAACG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGCGGCAGCAGTAAAAAGTCGAGCACGAATACGAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTGCCTCGCCGCGGTGAAGCAGGCGATCAGGGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGGACTGCGACGGAAAGGGGCGGACTGAGAAGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCGGATCAGCTTGATGTAGGCGTCGGTCCATCCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGCCCGGCGAGCTTCGCCGACGCGGCGAACTTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CACGGTCACCAATGCCGGCGTTGCCGGGTAACCACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCGAGGCTAAGGCGTATCTCGGCGTGCAGGACGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTTGGCGCTTACGCCGTGATCGTGATTGCCGTCAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTGGGATCGGGCGCTCGACGACCTGCAACTGATG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGTCGGTCCATCCGGCGTCGGCGAGCACGAGCTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CACGTGAGTTGTGCGTCGAGTTCGCTTGGCAGGTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGGCAGATCGCCGAGCACCGCGCCAAGCTCGAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATTAGTTGCACCGACGCGAGCGCCGAGTCGACGTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACGGCGACCCGCTGCGGCCGGACCTCGATTACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCGAGCAGTCCGGACGACACGCACGACCAGACCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGCGAGCGCCAGCGCCTTCACGGCCGAAGACGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCGACTGCCGAGCACCAGGCGCTGAAGACCGCCCACGACAAGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTTCGCCGGTGCCTACCAGCGCGACGACACAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGTGAGCGCGTCGGCGATGAAAATCGACTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACCTGTTCGTTCCAACCCCTCATGACCCACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTTCGACTTGATGACCGACGCCGCTTATCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTCACCACGGTCACGCTCGACCCGGTGCTGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCGCAATCCGCAACGGTGCGGAGAACGTCACCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCTCGGCGCTCACGCCTCACCCTCGATCGGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACGATCGTCGGCCACGACAACCACGGCAACTACAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCTGGCGACGGGTCGGTGGGAAGGGGGATCACAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGAATTGGAGCGATCAGCACCGTAGCGCCCGACA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCATCAAGGCGGTGGTGCACCGGCAGATCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGGCGACGATTGATGCCGCAGACGCAGCCCAACAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGGACGTACTGGCTCAGCGGCGCACGGTCGAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGCATGAGCGACGCCGAGTGGGATTACCTGTACC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCGTCCATGTCCATGCACAGGACGATGTCGGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCGATAAGTACGACAAGGCGACGAAGCAGCGCAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCATCTTTGTTACCACTAAGAGCGAGGACAGAAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGCCGAATGGTCGCCTACACCGCCGACTGGATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGCTGCCCAGTGAAGAGACAAGCGCGACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|2|1|1944001-1946917|PILER-CR
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTTCGCCGGTGCCTACCAGCGCGACGACACAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGTGAGCGCGTCGGCGATGAAAATCGACTCGGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACCTGTTCGTTCCAACCCCTCATGACCCACCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTTCGACTTGATGACCGACGCCGCTTATCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGTCACCACGGTCACGCTCGACCCGGTGCTGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCCGCAATCCGCAACGGTGCGGAGAACGTCACCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCTCGGCGCTCACGCCTCACCCTCGATCGGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACGATCGTCGGCCACGACAACCACGGCAACTACAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCTGGCGACGGGTCGGTGGGAAGGGGGATCACAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGGAATTGGAGCGATCAGCACCGTAGCGCCCGACA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCATCAAGGCGGTGGTGCACCGGCAGATCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGGCGACGATTGATGCCGCAGACGCAGCCCAACAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCCGGACGTACTGGCTCAGCGGCGCACGGTCGAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGGCATGAGCGACGCCGAGTGGGATTACCTGTACC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCGTCCATGTCCATGCACAGGACGATGTCGGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCGATAAGTACGACAAGGCGACGAAGCAGCGCAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCATCTTTGTTACCACTAAGAGCGAGGACAGAAA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGCCGAATGGTCGCCTACACCGCCGACTGGATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATGCTGCCCAGTGAAGAGACAAGCGCGACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|377095
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NC_006513.1\|WP_049780238.1\|1932612_1933212_-\|DOMON-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|187685
NC_006513.1\|WP_011236702.1\|1934427_1935465_+\|IS5-like-element-ISAzo11-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|273802
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_006513.1\|WP_041646099.1\|1938045_1938303_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_006513.1\|WP_083783023.1\|1933220_1934531_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.3603e-27
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.69824e-05
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.66654e-19
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.2501e-161
NC_006513.1\|WP_049780238.1\|1932612_1933212_-\|DOMON-like-domain-containing-protein	gnl\|CDD\|187685	cd09627, DOMON_murB_like, Domon-like domain of UDP-N-acetylenolpyruvoylglucosamine reductase. UDP-N-acetylenolpyruvoylglucosamine reductase (murB) catalyzes an essential step in peptidoglycan biosynthesis, the reduction of UDP-N-acetylglucosamine-enolpyruvate to UDP-N-acetylmuramate. A subset of these FAD-dependent enzymes contains a C-terminal DOMON-like domain. DOMON domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes; initially DOMON domains were suspected to confer protein-protein interactions. The DOMON-like domain in murB may bind a heme.	3.27579e-61
NC_006513.1\|WP_011236702.1\|1934427_1935465_+\|IS5-like-element-ISAzo11-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.39721e-21
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	5.45981e-10
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	5.07623e-115
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	2.15425e-21
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.68797e-22
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	9.34397e-70
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.73296e-09
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	7.28957e-10
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	4.24199e-40
NC_006513.1\|WP_083783023.1\|1933220_1934531_-\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	2.63527e-17
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.05493e-48

>NC_006513.1|WP_049780240.1|1941149_1941431_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKAFTARDLRERTAQVVRVAEEGKMSVVTKRGKPAFVAVPFDEALLESGVRTSLAIRLFDDGKLTLGQAARFAGGAVEEMIDRAATACQAGKA
>NC_006513.1|WP_049780362.1|1940140_1940842_-|N-acetylmuramoyl-L-alanine-amidase
MTGLMGAAALAITLSAHAGTGKAPFVAVDIGHTLAAPGATSARGRAEFEFNRDLALQVSAALERLDVRTELVNAEGTIESLAARPAQVPTADFFLSIHHDSVGESELEYWEWQGETQRYSDRWAGHSLFVSRRNPDLERSVLCAVTIGARLQRAGFVPTEKNGRRREYADRQHAVHFYDNLVVLYRARQPAVLFEAGVIKHRDEELLLRDPQRQALMAGEIATGLAACLGAGR
>NC_006513.1|WP_011237663.1|1938452_1940099_+|peptide-chain-release-factor-3
MADIPAATPSATPFPPELLRDVERRRTFGIISHPDAGKTTLTEKLLLFGGAIQLAGTVKARKSARHATSDWMEVEKQRGISVSSSVMQFEYAGHTINLLDTPGHQDFSEDTYRVLTAVDAAVMVIDAAKGVETQTIKLLEVCRLRNTPIITFINKMDREVRESFDLLQEIEEVLKIDCAPITWPIGMGKTFRGVYHLLEDRVLRFTPGEEKRSEAEVIKGIANAQLDELFPLEVGKLREEVDLIQGASNPFSLGDFLAGKQTPVFFGSGINNFGVQEILQALLDWAPPPQPRVAGVTVADTRLVMPAEAPFSGFVFKIQANMDPKHRDRIAFFRICSGRYSSGMKVKHVRMGREMKLANALTFMANERVLMEDGVAGDIIGIHNHGQLHIGDTLTEGENLGYKGIPYFSPELFSAARLRDPLKSKQLQKGLQELGEEGAIQVFEQEGGNMLLGAVGQLQFEVVAQRLKDEYKVDAIFESADIYTARWLVFPDEVTRRNFEREQGIRVGKDVDGNPVYLATSRYNLEVTMEKWPKVGFHATREHGEKLS
>NC_006513.1|WP_041646099.1|1938045_1938303_-|hypothetical-protein
MSRATPTLRQRKIFALTRILAGLVAACYLGYVVVANLAAGLPFDRTLLFTALVSAAGFAYAAWYLRELSAVAREEREGGGTDKSR
>NC_006513.1|WP_011237662.1|1937225_1937993_+|TerC-family-protein
MIELLTDPQLIFAFLTLTVLELVLGIDNIIFISILVDKLPPERRAFARRLGLFLAMFMRLALLSLLAWLASLNRALFEVFGHGFSARDLILLLGGLFLVWKSTGEIHQLMEGEEGEASSAVKATFAAVITQIIVIDLVFSLDSIITAIGMVDNLAVMIAAVVASVGLMMVASGPIGDFVSAHPTVKMLALSFLMVIGVVLLAEGFGHHVPKGYIYSAMAFSVVVEMLNIRMRKRAAHPVDLREPYVAEKVAAKRA
>NC_006513.1|WP_041646097.1|1936869_1937094_+|glycine-zipper-2TM-domain-containing-protein
MNIRTGVSAIVLAIAASGCATWDDMSSRERSAVIGAGVGGTAGAVVSDGGVLGTVGGAAIGGVIGDQIGKRRHP
>NC_006513.1|WP_083782955.1|1935599_1936517_-|TonB-dependent-receptor-plug-domain-containing-protein
MTISRTARCLWVPFASCTIATCAGAGEVPYLEELPHVLSASRLPQPLHEAPGAVTVIDHELLTATGYRDLARVFRLVPGMQIGQERGHAQWVTYHGLSNDFPTEMQVLIDGRSVITPSAFGGVDWSALPLTLDEIDRIEIVRGTNAASFGANAFLGVINIITRHSAEGAGTGGALRVGSGGVRDAEASWTNSGGSPVSLRVNAASRRDDGFDGVHDAHHMDIATLRGDWQLSSQDSVTLRAGASAGRRGEGYTESVFGNNGPRDTRSHTTTLHLKGRHAVGDGEEWMLNYYHTHERAPRITRGLQ
>NC_006513.1|WP_011236702.1|1934427_1935465_+|IS5-like-element-ISAzo11-family-transposase
MKPRSAIKTDLFAFDAHRQKIDALGDPLAEIESHIDFAALAAEVDRVAPRPVSAQGGRPPYPTETMVRILVVKRLYNLSDEQMEYQLLDRMSYKRFCGLANATNVPDRTTVWTFENRIGEAGAKALFDGVSAQLLQKGFIARGGQIIDATLVPAPKQHNRRGEKELIEQGAMPASWRPAKRRQKDLDATWTKKHGKSHFGYKLSINADKKYKIIRRLETDTASTHDSQHFDNVFDTRNTSRDVYADRGYPSEQREAWLKENGFRNRIQRKGKRNKPLSECQQRRNKRIAKTRARVEHVFGAIEQMGGKLLRTIGQERANFAMTMMAACYNLKRLVYFRKAGIEAF
>NC_006513.1|WP_083783023.1|1933220_1934531_-|TonB-dependent-receptor
MCDSISASGSPSASIFCRWASKANRSVLMALRGFIDVGCGEIQEDVILPRAGEARFFEAPERVRDEWIASAPGYPFVPLDRNRHSVRNHLELQHRSRPAPTMQAVWGIGARRDEVDAPFLFSTGNPAAQRLYRLFGNAEWRPLARLTLNLGGAHEKYSTAPAHFSPRAFANWQATDTDTLRGGYSRAWRQHNLFERDGDIRAIDPASGELLARPFLPHRDLRQARIDTVEFGYFGRFAAWNTTLDVRLFNERIHDFVVRVPQPDLRPAPVLAGFLGSTRYENLNRPVTLRGIEYQLVARPRSGTELRLAHSLIDRDAGNRGLEARTAPYTVSLSWLQDYGAGWKSMISVLRMGPLAGSEGYVPRFRYLARSYTTVDANLSYETRFGGKPLRFALSALNLGRRHQEIANGSEQMLQGRHMINPATRQVYLSVALALD
>NC_006513.1|WP_049780238.1|1932612_1933212_-|DOMON-like-domain-containing-protein
MIGASDSIALLPHPRTPCPAVEALEVRVDVAPGGTLGLRYRLHGDLARLRIPSPRPASRADGLWAHTCFEFFVAAPGTGAYREFNFSPSGEWAAYAFRAYREHDDEAAPALAAVAPRIVTHAAGRRLDVDVRLHAAALPAGSLDDLQLGLTAVIEDIDGKRSYWALRHPGPAPDFHLRDGFALTTGYVAKIPRLRQRTS
>NC_006513.1|WP_011236184.1|1947002_1948361_+|IS1182-like-element-ISAzo1-family-transposase
MSRFRPIDRQTDYLLPPSVQDWLPESHLARYVVDVVEGLDLSALERAYAGRGSDAYHPALLLSLLIYGYATGTHSSRKIERATYDSLAFRFIACDQHPDHDTLATFRRRFGDQFADAFVQVLQVARENQLSRFGTVSLDGTKIHANASRHSALSYGHAEKIEAQLKAEVQEMLALAEAADRSCVPEGVDLPAEIQRREDRLAAIAAAKAKIEARAKERFEREQAEFDAKLAKRQAKAAATGKKPGGKPPTPPAPGPRADDQLNLTDEDSRIMKVTGGGFEQCYNAQALVDTESMLVMVPHLTQAGNDKEQVEPMLARIAALPEGLNQPDQLLADTGFFSERNVERCQAAGIEPLIAVGRDEHHPDWRRRFEEPAPLEQPASPVEQMKHALKTRAGRAAYALRKQTVEPVFGIIKSVMGFRQFLLRGLDNVRAEWTLVCLAWNLKRMAVLRPQ
>NC_006513.1|WP_011236249.1|1950587_1951676_+|IS21-like-element-ISAzo17-family-transposase
MITDEVYVEIELLRRHGLSLRRIAAEVGCAVNTVRAHLASPGLPRYARKVQRVTKLAPFEAYLRERQAAAHPHWIPASVLMREIVAQGYQGGASQLRAFMHMLKPAQPSEPVVRFETAPGHQMQVDWVEFRKGAQPLYAFCATLGYSRMSYVEFVTDMKVTTLIGCHERSFAAFGGVVRQVLYDNMKTVVLERDVDGEGAHRYHAGFLDYARHAGFVIKLCRPYRARTKGKVERFNGYLRRSFYVPLVAQFKQAGLVLDAATATVQVRRWLDEVANVRVHGTTGEQPVARLAAERAALQALAPPWRGDIEGARPQAEAAHDEGPVRPPAVRAHLETAQPAQHPLAVYDALLQTLQQAQEIGA
>NC_006513.1|WP_011236051.1|1951672_1952452_+|AAA-family-ATPase
MNLQYERIQALCQTLSLPLTAQGYAAAAQQAATDQLAYSDFLEQLLRAEAAGRQSRKQSMLTRLAGFPAIKTLEDFDYGFASGLKRSQIEELASLAFVERAENVVLVGPSGVGKTHLAIALGYRATQAGIKTRFTTAADLLLTLVLAHERNQLKNVMQRAINAYRLLIVDEIGYLPMTREQANLFFQVIAARYERGSLIVTSNLSFGQWDSTFAQDATLTAALLDRLLHHAHIVPISGESYRLKHQRKAGMVQALAVAG
>NC_006513.1|WP_041646101.1|1953762_1954053_-|CRISPR-associated-endonuclease-Cas2
MLVIVCYDVNTETRAGRRRLRRIARICEGVGQRVQKSVFEFQISVVQFEELERRLLDEIDLTQDNLRLYRLPDSRGTEVREHGIFRTTDFEGPLVL
>NC_006513.1|WP_011237667.1|1954057_1955086_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MQLLNTLYVTTPESYLHLDNDTLRVEVERETRLRVPLHHLGGVVCMGNVMLSTPLMHRLAGDGIGLVLLDGNGRFKARLEGPVSGNVLLRRAQHIQSADTDFALQFARSCIAGKIRNARQMLLRGARDARNEEESARITRAAEDLAAALRSVPGSGDADILRGVEGEAARQYFAALNLLVREDARPVFQMDGRSRRPPRDRMNALLSFLYSMLMNDCRSAVEAAGLDPQVGFLHVLRPGRAALALDLMEEFRPFADRLALTLINRGQIAGDDFVERAGGAVLLEGDARKAVVVAWQERKQEELTHPLLAQAIPLGVVPLVQARLMARTVRGEMDTYLPFLVR
>NC_006513.1|WP_011237668.1|1955088_1955721_-|CRISPR-associated-protein-Cas4
MDTPDPIPLSALQHWRYCPRQCALIHLEQAFEENIHTLRGQAVHAQVDQPGVEVRAGLRVERALPVFSDRLGLIGKADVVEFLADGTPYPVEYKHGARNKKAEIAACDDLQLAGQALCLEEMTGRPVPEGALFYASSKRRRVVPITPELRAEVEATAAAIRNMLAAGRTPPPVNNERCPGCSLRELCQPGALAARDTQADFARHLFDLDA
>NC_006513.1|WP_041646102.1|1955775_1956018_+|addiction-module-protein
MSFTLESVTAEALKLTPDERAELIETLLASVEPTMPLHPEWEAEIERRVADMDAGRTTPIPGEEVFAKVRALIAAHDQKA
>NC_006513.1|WP_041646104.1|1956014_1956305_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRYVFTPAAQQELIDAVRWYLGEAGTVTAERFESAVYSAVRFLARMPRLGTSAYRRFRLWSVKDFPYTLVYRIEAEGISVIALAHQSRAPGYWRKR
>NC_006513.1|WP_011237670.1|1956370_1957213_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQNKIDFAVVIRVKHANPNGDPLNGNRPRTDYGGLGEITDVCLKRKLRDRLQETGHAIFVQSDDRKIDGEPSLRTRAESEKNGLGKEAFKKGAKREETAKKACEKWFDVRAFGQVFAFGKGDDANGVSIPIRGPLTIQSAFSKEPVSITSTQITKSVSGEGDGSKRGSDTMGMKHRVDSGIYECFGSINPQLAERTGFSDADAETIKTILPKLFENDASSARPDGSMEVLKVVWWKHNCKAGQYSSAKVHRLLKVSPDGTINLSRLDGLEAEEIDGF
>NC_006513.1|WP_011237671.1|1957230_1959063_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWIQKLYETYERCANAPELTGPQPWPIAHLVKRAHVEVAIDAEGNFRRAQKLDRLQSPTLIPATEASAGRTAGVAAHPLCEEIGYCAADYPGLEANRYSDYEKQLEQWCSSEFSHPKARAIYAYLRKGLLWSDLNAHKIFPVAIEDAHGKKTKVKDEKVFLRWRVETPGEFCSGTWEDDDLIDAWISFDRAQNHENNICIVTGATARIGRNHSRFLRHPGDGAKLISVNDAEGYTFRGRFTDGKNEYGKQACSVGFETSQKAHNALRWLIARQGYRNGDQAVVSWAINGTLVPDPFANTLELFGRLDLLDSEPPPADTAQAFALRLKRAIAGYRAKLDPTSDVVVMGLDSATPGRMAITFYRELKGSEFIERIEYWHTNCAWSQNFGKESRFVGAPAPRDIAEAAYGRRLDDKLRKATVERVLPCIVDSQPIPRDLVESTVRRASNRVGLENWEWEKCLGIACALFKGYHTEGSYQMALEQDRTSRDYLYGRLLAIAEHIEGRALHVAGEKRDTTAARLMQRFADRPYSTWKTIELSLAPYKTRLRAQRTGFLFEMDKLLDDVTASFPSHSFTQDSQLSGEFLLGYHCQRQALRPNSVEPADNNSDTND

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Crispr_ID: NC_006513_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006513_3

1948501-1950468

TypeI

Consensus_repeat	Method
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	PILER-CR
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRISPRCasFinder
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRT

27 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NC_006513_3

>merge|NC_006513|3|1948501-1950468|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGATATGACCTTCGGCTCGATGGTCGGATTCATGGTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATGATGTTGTCCTTGTTCATGGTCGGCGACTTATTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGAGGAGAGATCGCCGGCTGCATCCCCATCAACGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCCCCACGATCTTGCCCATGCACTCGTTCTGGCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGAACCCGGTCACGGGGACGATCCGCTGGTCATCGTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGATCGAGTGCGTGTTCCGCTACCGCACGCGGACTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGCGAACGTTTCCGCCTGCAGGGTCATATCGGAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCACTCTCCGGCACGGCGATCGATTGGGCCGCCAACGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCACGATCAATGGCGTGAGCTTCAACGGCACGGCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTAGGTCGGGTTGCCGGCGTGACCGATGCGGAACCAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCCGACTACGCCGGAGCGTGGCAAGCGCTCGGAACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTCGATTTCTGCCACCTCAACGGGCTCACCGGTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCAGCGTGATCAGCCGACACGCTGGGTCGTCAATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGTCGACGAGTTCGGTGTCAGCCATCTCCTGGCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCATAGCAGTCTCTATGCCGACGTACTGGTCAATCTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAGCGATGCCGCACTTCAGCATGCTGTCGAGCACGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCAAAGGCCGGCACCTCAACCACCGCGCCCCAGGCAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCCAGCCCGTCGTCGAATACATCGAGGTCGAATGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAGAGCGCGACGGATGCGACTTCGGGCCGATTACTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTTGAGTTGGGCGCGAGCATTAGGGATTTGTGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTTTTGTGGATGCGCAGCATTGCTTGCTGCCCATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTGGTTTCCCGCCTTCACGTCTGCCAGGAATTTAGAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCAGCACGCCGATCGGCATGTCCTCCGTCGGATAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGACTGCAAGGCGATGCTGCTGCGCGCCGGCATCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|3|2|1948501-1950468|PILER-CR
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATATGACCTTCGGCTCGATGGTCGGATTCATGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGATGTTGTCCTTGTTCATGGTCGGCGACTTATT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAGGAGAGATCGCCGGCTGCATCCCCATCAACGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCCCCACGATCTTGCCCATGCACTCGTTCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAACCCGGTCACGGGGACGATCCGCTGGTCATCGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCGAGTGCGTGTTCCGCTACCGCACGCGGACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGAACGTTTCCGCCTGCAGGGTCATATCGGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACTCTCCGGCACGGCGATCGATTGGGCCGCCAACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACGATCAATGGCGTGAGCTTCAACGGCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TAGGTCGGGTTGCCGGCGTGACCGATGCGGAACCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGACTACGCCGGAGCGTGGCAAGCGCTCGGAAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGATTTCTGCCACCTCAACGGGCTCACCGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAGCGTGATCAGCCGACACGCTGGGTCGTCAAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCGACGAGTTCGGTGTCAGCCATCTCCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATAGCAGTCTCTATGCCGACGTACTGGTCAATCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGATGCCGCACTTCAGCATGCTGTCGAGCAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AAAGGCCGGCACCTCAACCACCGCGCCCCAGGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCCAGCCCGTCGTCGAATACATCGAGGTCGAATGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGAGCGCGACGGATGCGACTTCGGGCCGATTACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTGAGTTGGGCGCGAGCATTAGGGATTTGTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTTTGTGGATGCGCAGCATTGCTTGCTGCCCAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGTTTCCCGCCTTCACGTCTGCCAGGAATTTAGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCAGCACGCCGATCGGCATGTCCTCCGTCGGATA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGACTGCAAGGCGATGCTGCTGCGCGCCGGCATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|3|3|1948501-1950468|CRISPRCasFinder
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATATGACCTTCGGCTCGATGGTCGGATTCATGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGATGTTGTCCTTGTTCATGGTCGGCGACTTATT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAGGAGAGATCGCCGGCTGCATCCCCATCAACGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCCCCACGATCTTGCCCATGCACTCGTTCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAACCCGGTCACGGGGACGATCCGCTGGTCATCGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCGAGTGCGTGTTCCGCTACCGCACGCGGACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGAACGTTTCCGCCTGCAGGGTCATATCGGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACTCTCCGGCACGGCGATCGATTGGGCCGCCAACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACGATCAATGGCGTGAGCTTCAACGGCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TAGGTCGGGTTGCCGGCGTGACCGATGCGGAACCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGACTACGCCGGAGCGTGGCAAGCGCTCGGAAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGATTTCTGCCACCTCAACGGGCTCACCGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAGCGTGATCAGCCGACACGCTGGGTCGTCAAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCGACGAGTTCGGTGTCAGCCATCTCCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATAGCAGTCTCTATGCCGACGTACTGGTCAATCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGATGCCGCACTTCAGCATGCTGTCGAGCAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AAAGGCCGGCACCTCAACCACCGCGCCCCAGGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCCAGCCCGTCGTCGAATACATCGAGGTCGAATGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGAGCGCGACGGATGCGACTTCGGGCCGATTACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTGAGTTGGGCGCGAGCATTAGGGATTTGTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTTTGTGGATGCGCAGCATTGCTTGCTGCCCAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGTTTCCCGCCTTCACGTCTGCCAGGAATTTAGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCAGCACGCCGATCGGCATGTCCTCCGTCGGATA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGACTGCAAGGCGATGCTGCTGCGCGCCGGCATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|3|2|1948501-1950468|CRT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATATGACCTTCGGCTCGATGGTCGGATTCATGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATGATGTTGTCCTTGTTCATGGTCGGCGACTTATT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAGGAGAGATCGCCGGCTGCATCCCCATCAACGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCCCCACGATCTTGCCCATGCACTCGTTCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GAACCCGGTCACGGGGACGATCCGCTGGTCATCGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATCGAGTGCGTGTTCCGCTACCGCACGCGGACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGCGAACGTTTCCGCCTGCAGGGTCATATCGGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ACTCTCCGGCACGGCGATCGATTGGGCCGCCAACGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCACGATCAATGGCGTGAGCTTCAACGGCACGGC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TAGGTCGGGTTGCCGGCGTGACCGATGCGGAACCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CCGACTACGCCGGAGCGTGGCAAGCGCTCGGAAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGATTTCTGCCACCTCAACGGGCTCACCGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAGCGTGATCAGCCGACACGCTGGGTCGTCAAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGTCGACGAGTTCGGTGTCAGCCATCTCCTGGCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	ATAGCAGTCTCTATGCCGACGTACTGGTCAATCT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGATGCCGCACTTCAGCATGCTGTCGAGCAC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AAAGGCCGGCACCTCAACCACCGCGCCCCAGGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCCAGCCCGTCGTCGAATACATCGAGGTCGAATGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGAGCGCGACGGATGCGACTTCGGGCCGATTACT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTGAGTTGGGCGCGAGCATTAGGGATTTGTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTTTTGTGGATGCGCAGCATTGCTTGCTGCCCAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TGGTTTCCCGCCTTCACGTCTGCCAGGAATTTAGA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCAGCACGCCGATCGGCATGTCCTCCGTCGGATA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGACTGCAAGGCGATGCTGCTGCGCGCCGGCATC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|377095
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NC_006513.1\|WP_011236702.1\|1934427_1935465_+\|IS5-like-element-ISAzo11-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|273802
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_006513.1\|WP_041646099.1\|1938045_1938303_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NC_006513.1\|WP_011237672.1\|1959059_1959788_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_006513.1\|WP_083783023.1\|1933220_1934531_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.3603e-27
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.69824e-05
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.66654e-19
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.2501e-161
NC_006513.1\|WP_011236702.1\|1934427_1935465_+\|IS5-like-element-ISAzo11-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.39721e-21
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	5.45981e-10
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	5.07623e-115
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	2.15425e-21
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.68797e-22
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	9.34397e-70
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.73296e-09
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	7.28957e-10
NC_006513.1\|WP_011237672.1\|1959059_1959788_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.15168e-104
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	4.24199e-40
NC_006513.1\|WP_083783023.1\|1933220_1934531_-\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	2.63527e-17
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.05493e-48

>NC_006513.1|WP_011236184.1|1947002_1948361_+|IS1182-like-element-ISAzo1-family-transposase
MSRFRPIDRQTDYLLPPSVQDWLPESHLARYVVDVVEGLDLSALERAYAGRGSDAYHPALLLSLLIYGYATGTHSSRKIERATYDSLAFRFIACDQHPDHDTLATFRRRFGDQFADAFVQVLQVARENQLSRFGTVSLDGTKIHANASRHSALSYGHAEKIEAQLKAEVQEMLALAEAADRSCVPEGVDLPAEIQRREDRLAAIAAAKAKIEARAKERFEREQAEFDAKLAKRQAKAAATGKKPGGKPPTPPAPGPRADDQLNLTDEDSRIMKVTGGGFEQCYNAQALVDTESMLVMVPHLTQAGNDKEQVEPMLARIAALPEGLNQPDQLLADTGFFSERNVERCQAAGIEPLIAVGRDEHHPDWRRRFEEPAPLEQPASPVEQMKHALKTRAGRAAYALRKQTVEPVFGIIKSVMGFRQFLLRGLDNVRAEWTLVCLAWNLKRMAVLRPQ
>NC_006513.1|WP_049780240.1|1941149_1941431_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKAFTARDLRERTAQVVRVAEEGKMSVVTKRGKPAFVAVPFDEALLESGVRTSLAIRLFDDGKLTLGQAARFAGGAVEEMIDRAATACQAGKA
>NC_006513.1|WP_049780362.1|1940140_1940842_-|N-acetylmuramoyl-L-alanine-amidase
MTGLMGAAALAITLSAHAGTGKAPFVAVDIGHTLAAPGATSARGRAEFEFNRDLALQVSAALERLDVRTELVNAEGTIESLAARPAQVPTADFFLSIHHDSVGESELEYWEWQGETQRYSDRWAGHSLFVSRRNPDLERSVLCAVTIGARLQRAGFVPTEKNGRRREYADRQHAVHFYDNLVVLYRARQPAVLFEAGVIKHRDEELLLRDPQRQALMAGEIATGLAACLGAGR
>NC_006513.1|WP_011237663.1|1938452_1940099_+|peptide-chain-release-factor-3
MADIPAATPSATPFPPELLRDVERRRTFGIISHPDAGKTTLTEKLLLFGGAIQLAGTVKARKSARHATSDWMEVEKQRGISVSSSVMQFEYAGHTINLLDTPGHQDFSEDTYRVLTAVDAAVMVIDAAKGVETQTIKLLEVCRLRNTPIITFINKMDREVRESFDLLQEIEEVLKIDCAPITWPIGMGKTFRGVYHLLEDRVLRFTPGEEKRSEAEVIKGIANAQLDELFPLEVGKLREEVDLIQGASNPFSLGDFLAGKQTPVFFGSGINNFGVQEILQALLDWAPPPQPRVAGVTVADTRLVMPAEAPFSGFVFKIQANMDPKHRDRIAFFRICSGRYSSGMKVKHVRMGREMKLANALTFMANERVLMEDGVAGDIIGIHNHGQLHIGDTLTEGENLGYKGIPYFSPELFSAARLRDPLKSKQLQKGLQELGEEGAIQVFEQEGGNMLLGAVGQLQFEVVAQRLKDEYKVDAIFESADIYTARWLVFPDEVTRRNFEREQGIRVGKDVDGNPVYLATSRYNLEVTMEKWPKVGFHATREHGEKLS
>NC_006513.1|WP_041646099.1|1938045_1938303_-|hypothetical-protein
MSRATPTLRQRKIFALTRILAGLVAACYLGYVVVANLAAGLPFDRTLLFTALVSAAGFAYAAWYLRELSAVAREEREGGGTDKSR
>NC_006513.1|WP_011237662.1|1937225_1937993_+|TerC-family-protein
MIELLTDPQLIFAFLTLTVLELVLGIDNIIFISILVDKLPPERRAFARRLGLFLAMFMRLALLSLLAWLASLNRALFEVFGHGFSARDLILLLGGLFLVWKSTGEIHQLMEGEEGEASSAVKATFAAVITQIIVIDLVFSLDSIITAIGMVDNLAVMIAAVVASVGLMMVASGPIGDFVSAHPTVKMLALSFLMVIGVVLLAEGFGHHVPKGYIYSAMAFSVVVEMLNIRMRKRAAHPVDLREPYVAEKVAAKRA
>NC_006513.1|WP_041646097.1|1936869_1937094_+|glycine-zipper-2TM-domain-containing-protein
MNIRTGVSAIVLAIAASGCATWDDMSSRERSAVIGAGVGGTAGAVVSDGGVLGTVGGAAIGGVIGDQIGKRRHP
>NC_006513.1|WP_083782955.1|1935599_1936517_-|TonB-dependent-receptor-plug-domain-containing-protein
MTISRTARCLWVPFASCTIATCAGAGEVPYLEELPHVLSASRLPQPLHEAPGAVTVIDHELLTATGYRDLARVFRLVPGMQIGQERGHAQWVTYHGLSNDFPTEMQVLIDGRSVITPSAFGGVDWSALPLTLDEIDRIEIVRGTNAASFGANAFLGVINIITRHSAEGAGTGGALRVGSGGVRDAEASWTNSGGSPVSLRVNAASRRDDGFDGVHDAHHMDIATLRGDWQLSSQDSVTLRAGASAGRRGEGYTESVFGNNGPRDTRSHTTTLHLKGRHAVGDGEEWMLNYYHTHERAPRITRGLQ
>NC_006513.1|WP_011236702.1|1934427_1935465_+|IS5-like-element-ISAzo11-family-transposase
MKPRSAIKTDLFAFDAHRQKIDALGDPLAEIESHIDFAALAAEVDRVAPRPVSAQGGRPPYPTETMVRILVVKRLYNLSDEQMEYQLLDRMSYKRFCGLANATNVPDRTTVWTFENRIGEAGAKALFDGVSAQLLQKGFIARGGQIIDATLVPAPKQHNRRGEKELIEQGAMPASWRPAKRRQKDLDATWTKKHGKSHFGYKLSINADKKYKIIRRLETDTASTHDSQHFDNVFDTRNTSRDVYADRGYPSEQREAWLKENGFRNRIQRKGKRNKPLSECQQRRNKRIAKTRARVEHVFGAIEQMGGKLLRTIGQERANFAMTMMAACYNLKRLVYFRKAGIEAF
>NC_006513.1|WP_083783023.1|1933220_1934531_-|TonB-dependent-receptor
MCDSISASGSPSASIFCRWASKANRSVLMALRGFIDVGCGEIQEDVILPRAGEARFFEAPERVRDEWIASAPGYPFVPLDRNRHSVRNHLELQHRSRPAPTMQAVWGIGARRDEVDAPFLFSTGNPAAQRLYRLFGNAEWRPLARLTLNLGGAHEKYSTAPAHFSPRAFANWQATDTDTLRGGYSRAWRQHNLFERDGDIRAIDPASGELLARPFLPHRDLRQARIDTVEFGYFGRFAAWNTTLDVRLFNERIHDFVVRVPQPDLRPAPVLAGFLGSTRYENLNRPVTLRGIEYQLVARPRSGTELRLAHSLIDRDAGNRGLEARTAPYTVSLSWLQDYGAGWKSMISVLRMGPLAGSEGYVPRFRYLARSYTTVDANLSYETRFGGKPLRFALSALNLGRRHQEIANGSEQMLQGRHMINPATRQVYLSVALALD
>NC_006513.1|WP_011236249.1|1950587_1951676_+|IS21-like-element-ISAzo17-family-transposase
MITDEVYVEIELLRRHGLSLRRIAAEVGCAVNTVRAHLASPGLPRYARKVQRVTKLAPFEAYLRERQAAAHPHWIPASVLMREIVAQGYQGGASQLRAFMHMLKPAQPSEPVVRFETAPGHQMQVDWVEFRKGAQPLYAFCATLGYSRMSYVEFVTDMKVTTLIGCHERSFAAFGGVVRQVLYDNMKTVVLERDVDGEGAHRYHAGFLDYARHAGFVIKLCRPYRARTKGKVERFNGYLRRSFYVPLVAQFKQAGLVLDAATATVQVRRWLDEVANVRVHGTTGEQPVARLAAERAALQALAPPWRGDIEGARPQAEAAHDEGPVRPPAVRAHLETAQPAQHPLAVYDALLQTLQQAQEIGA
>NC_006513.1|WP_011236051.1|1951672_1952452_+|AAA-family-ATPase
MNLQYERIQALCQTLSLPLTAQGYAAAAQQAATDQLAYSDFLEQLLRAEAAGRQSRKQSMLTRLAGFPAIKTLEDFDYGFASGLKRSQIEELASLAFVERAENVVLVGPSGVGKTHLAIALGYRATQAGIKTRFTTAADLLLTLVLAHERNQLKNVMQRAINAYRLLIVDEIGYLPMTREQANLFFQVIAARYERGSLIVTSNLSFGQWDSTFAQDATLTAALLDRLLHHAHIVPISGESYRLKHQRKAGMVQALAVAG
>NC_006513.1|WP_041646101.1|1953762_1954053_-|CRISPR-associated-endonuclease-Cas2
MLVIVCYDVNTETRAGRRRLRRIARICEGVGQRVQKSVFEFQISVVQFEELERRLLDEIDLTQDNLRLYRLPDSRGTEVREHGIFRTTDFEGPLVL
>NC_006513.1|WP_011237667.1|1954057_1955086_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MQLLNTLYVTTPESYLHLDNDTLRVEVERETRLRVPLHHLGGVVCMGNVMLSTPLMHRLAGDGIGLVLLDGNGRFKARLEGPVSGNVLLRRAQHIQSADTDFALQFARSCIAGKIRNARQMLLRGARDARNEEESARITRAAEDLAAALRSVPGSGDADILRGVEGEAARQYFAALNLLVREDARPVFQMDGRSRRPPRDRMNALLSFLYSMLMNDCRSAVEAAGLDPQVGFLHVLRPGRAALALDLMEEFRPFADRLALTLINRGQIAGDDFVERAGGAVLLEGDARKAVVVAWQERKQEELTHPLLAQAIPLGVVPLVQARLMARTVRGEMDTYLPFLVR
>NC_006513.1|WP_011237668.1|1955088_1955721_-|CRISPR-associated-protein-Cas4
MDTPDPIPLSALQHWRYCPRQCALIHLEQAFEENIHTLRGQAVHAQVDQPGVEVRAGLRVERALPVFSDRLGLIGKADVVEFLADGTPYPVEYKHGARNKKAEIAACDDLQLAGQALCLEEMTGRPVPEGALFYASSKRRRVVPITPELRAEVEATAAAIRNMLAAGRTPPPVNNERCPGCSLRELCQPGALAARDTQADFARHLFDLDA
>NC_006513.1|WP_041646102.1|1955775_1956018_+|addiction-module-protein
MSFTLESVTAEALKLTPDERAELIETLLASVEPTMPLHPEWEAEIERRVADMDAGRTTPIPGEEVFAKVRALIAAHDQKA
>NC_006513.1|WP_041646104.1|1956014_1956305_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRYVFTPAAQQELIDAVRWYLGEAGTVTAERFESAVYSAVRFLARMPRLGTSAYRRFRLWSVKDFPYTLVYRIEAEGISVIALAHQSRAPGYWRKR
>NC_006513.1|WP_011237670.1|1956370_1957213_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQNKIDFAVVIRVKHANPNGDPLNGNRPRTDYGGLGEITDVCLKRKLRDRLQETGHAIFVQSDDRKIDGEPSLRTRAESEKNGLGKEAFKKGAKREETAKKACEKWFDVRAFGQVFAFGKGDDANGVSIPIRGPLTIQSAFSKEPVSITSTQITKSVSGEGDGSKRGSDTMGMKHRVDSGIYECFGSINPQLAERTGFSDADAETIKTILPKLFENDASSARPDGSMEVLKVVWWKHNCKAGQYSSAKVHRLLKVSPDGTINLSRLDGLEAEEIDGF
>NC_006513.1|WP_011237671.1|1957230_1959063_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWIQKLYETYERCANAPELTGPQPWPIAHLVKRAHVEVAIDAEGNFRRAQKLDRLQSPTLIPATEASAGRTAGVAAHPLCEEIGYCAADYPGLEANRYSDYEKQLEQWCSSEFSHPKARAIYAYLRKGLLWSDLNAHKIFPVAIEDAHGKKTKVKDEKVFLRWRVETPGEFCSGTWEDDDLIDAWISFDRAQNHENNICIVTGATARIGRNHSRFLRHPGDGAKLISVNDAEGYTFRGRFTDGKNEYGKQACSVGFETSQKAHNALRWLIARQGYRNGDQAVVSWAINGTLVPDPFANTLELFGRLDLLDSEPPPADTAQAFALRLKRAIAGYRAKLDPTSDVVVMGLDSATPGRMAITFYRELKGSEFIERIEYWHTNCAWSQNFGKESRFVGAPAPRDIAEAAYGRRLDDKLRKATVERVLPCIVDSQPIPRDLVESTVRRASNRVGLENWEWEKCLGIACALFKGYHTEGSYQMALEQDRTSRDYLYGRLLAIAEHIEGRALHVAGEKRDTTAARLMQRFADRPYSTWKTIELSLAPYKTRLRAQRTGFLFEMDKLLDDVTASFPSHSFTQDSQLSGEFLLGYHCQRQALRPNSVEPADNNSDTND
>NC_006513.1|WP_011237672.1|1959059_1959788_-|type-I-C-CRISPR-associated-protein-Cas5
MTRSTRNSIEFKVWGRHALFTDPLTKVGGEKCSYHVPTYEALKGIAKSIYWKPTLIWVIDEVRVMKRVRTQTKGTKPLEFGGGNSLAIYTFLADVEYQVRAHFEWNEHRPELQADRIDGKHYAIARRMLERGGRQDIFLGTRDCQGYIEPCEFGGGAGAHDEGSELAFGLMFHGFDYPDETGDQKLHARFWRPVMRNGFIRFDRPEDCPVRKFVRSMSVKPFGFGQNLQSADEAAAELEGLA

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Crispr_ID: NC_006513_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006513_4

1952604-1953575

TypeI

Consensus_repeat	Method
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	PILER-CR
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRISPRCasFinder
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CRT

13 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_006513_4

>merge|NC_006513|4|1952604-1953575|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAGCGAGGGCGGGCTGGTGGTGTTTGCGGAAACCGAGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCGCATCTCGTGCCCGCAGAGCGTGCAGCGGAGCAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGTCGGCGACTGCCTGGCCATCACCATGCAGGCGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCAACGCGACCTTGAACAGCGCGAAGCCCTTGCGATGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCAACGACTTGTTCGCGGCGATCCGCTGCGTCTCGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCAACCACTGGCACCGACGGAGGGCCGCACAAGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCAATCCGATCGTCGATCGGGCCACGGGAGAGGTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCCTCGGCGCGGCCGGCGGCTACTACAAGCACCTGATGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTCTTGCAGATGTGCACGGTCGAGGTCGAACGTGTCGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGATTGAGTCGGCGGGGTGGATAAGCCACACTAACTAGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGGATGGGATCGATATTGGTGCAGGGTGGCCTGCGTGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCTTCGGCGTGGCATGGCAACTAAAGCGCGTACTGGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGCGCGGCGTTGTTGCCGATCGTCTTCGTTACGTTCTGGTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|4|3|1952604-1953575|PILER-CR
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGAGGGCGGGCTGGTGGTGTTTGCGGAAACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCTCGTGCCCGCAGAGCGTGCAGCGGAGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGGCGACTGCCTGGCCATCACCATGCAGGCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGCGACCTTGAACAGCGCGAAGCCCTTGCGATG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGACTTGTTCGCGGCGATCCGCTGCGTCTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAACCACTGGCACCGACGGAGGGCCGCACAAGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAATCCGATCGTCGATCGGGCCACGGGAGAGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGGCGCGGCCGGCGGCTACTACAAGCACCTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTTGCAGATGTGCACGGTCGAGGTCGAACGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATTGAGTCGGCGGGGTGGATAAGCCACACTAACTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATGGGATCGATATTGGTGCAGGGTGGCCTGCGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCGGCGTGGCATGGCAACTAAAGCGCGTACTGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTTGTTGCCGATCGTCTTCGTTACGTTCTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|4|4|1952604-1953575|CRISPRCasFinder
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGAGGGCGGGCTGGTGGTGTTTGCGGAAACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCTCGTGCCCGCAGAGCGTGCAGCGGAGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGGCGACTGCCTGGCCATCACCATGCAGGCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGCGACCTTGAACAGCGCGAAGCCCTTGCGATG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGACTTGTTCGCGGCGATCCGCTGCGTCTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAACCACTGGCACCGACGGAGGGCCGCACAAGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAATCCGATCGTCGATCGGGCCACGGGAGAGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGGCGCGGCCGGCGGCTACTACAAGCACCTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTTGCAGATGTGCACGGTCGAGGTCGAACGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATTGAGTCGGCGGGGTGGATAAGCCACACTAACTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATGGGATCGATATTGGTGCAGGGTGGCCTGCGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCGGCGTGGCATGGCAACTAAAGCGCGTACTGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTTGTTGCCGATCGTCTTCGTTACGTTCTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

>NC_006513|4|3|1952604-1953575|CRT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAGCGAGGGCGGGCTGGTGGTGTTTGCGGAAACCGAG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CGCATCTCGTGCCCGCAGAGCGTGCAGCGGAGCA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GTCGGCGACTGCCTGGCCATCACCATGCAGGCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGCGACCTTGAACAGCGCGAAGCCCTTGCGATG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	AACGACTTGTTCGCGGCGATCCGCTGCGTCTCGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CAACCACTGGCACCGACGGAGGGCCGCACAAGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCAATCCGATCGTCGATCGGGCCACGGGAGAGGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	CTCGGCGCGGCCGGCGGCTACTACAAGCACCTGAT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TCTTGCAGATGTGCACGGTCGAGGTCGAACGTGTC
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GATTGAGTCGGCGGGGTGGATAAGCCACACTAACTA
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GGATGGGATCGATATTGGTGCAGGGTGGCCTGCGT
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	TTCGGCGTGGCATGGCAACTAAAGCGCGTACTGG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC	GCGGCGTTGTTGCCGATCGTCTTCGTTACGTTCTG
GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|377095
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|273802
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_006513.1\|WP_041646099.1\|1938045_1938303_-\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_011237673.1\|1959780_1962267_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NC_006513.1\|WP_011237672.1\|1959059_1959788_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_006513.1\|WP_049780363.1\|1962767_1963583_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
NC_006513.1\|WP_049780362.1\|1940140_1940842_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.3603e-27
NC_006513.1\|WP_049780240.1\|1941149_1941431_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	3.69824e-05
NC_006513.1\|WP_011236184.1\|1947002_1948361_+\|IS1182-like-element-ISAzo1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.66654e-19
NC_006513.1\|WP_011236051.1\|1951672_1952452_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.2501e-161
NC_006513.1\|WP_041646102.1\|1955775_1956018_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	5.45981e-10
NC_006513.1\|WP_011237667.1\|1954057_1955086_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_006513.1\|WP_041646101.1\|1953762_1954053_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.68797e-22
NC_006513.1\|WP_011237662.1\|1937225_1937993_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	9.34397e-70
NC_006513.1\|WP_011237663.1\|1938452_1940099_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_006513.1\|WP_011237673.1\|1959780_1962267_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.43087e-56
NC_006513.1\|WP_041646104.1\|1956014_1956305_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.73296e-09
NC_006513.1\|WP_041646097.1\|1936869_1937094_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	7.28957e-10
NC_006513.1\|WP_011237672.1\|1959059_1959788_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.15168e-104
NC_006513.1\|WP_083782955.1\|1935599_1936517_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	2.15425e-21
NC_006513.1\|WP_049780363.1\|1962767_1963583_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.50943e-54
NC_006513.1\|WP_011237668.1\|1955088_1955721_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	4.24199e-40
NC_006513.1\|WP_011237670.1\|1956370_1957213_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	5.07623e-115
NC_006513.1\|WP_011237671.1\|1957230_1959063_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_006513.1\|WP_011236249.1\|1950587_1951676_+\|IS21-like-element-ISAzo17-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.05493e-48

>NC_006513.1|WP_011236051.1|1951672_1952452_+|AAA-family-ATPase
MNLQYERIQALCQTLSLPLTAQGYAAAAQQAATDQLAYSDFLEQLLRAEAAGRQSRKQSMLTRLAGFPAIKTLEDFDYGFASGLKRSQIEELASLAFVERAENVVLVGPSGVGKTHLAIALGYRATQAGIKTRFTTAADLLLTLVLAHERNQLKNVMQRAINAYRLLIVDEIGYLPMTREQANLFFQVIAARYERGSLIVTSNLSFGQWDSTFAQDATLTAALLDRLLHHAHIVPISGESYRLKHQRKAGMVQALAVAG
>NC_006513.1|WP_011236249.1|1950587_1951676_+|IS21-like-element-ISAzo17-family-transposase
MITDEVYVEIELLRRHGLSLRRIAAEVGCAVNTVRAHLASPGLPRYARKVQRVTKLAPFEAYLRERQAAAHPHWIPASVLMREIVAQGYQGGASQLRAFMHMLKPAQPSEPVVRFETAPGHQMQVDWVEFRKGAQPLYAFCATLGYSRMSYVEFVTDMKVTTLIGCHERSFAAFGGVVRQVLYDNMKTVVLERDVDGEGAHRYHAGFLDYARHAGFVIKLCRPYRARTKGKVERFNGYLRRSFYVPLVAQFKQAGLVLDAATATVQVRRWLDEVANVRVHGTTGEQPVARLAAERAALQALAPPWRGDIEGARPQAEAAHDEGPVRPPAVRAHLETAQPAQHPLAVYDALLQTLQQAQEIGA
>NC_006513.1|WP_011236184.1|1947002_1948361_+|IS1182-like-element-ISAzo1-family-transposase
MSRFRPIDRQTDYLLPPSVQDWLPESHLARYVVDVVEGLDLSALERAYAGRGSDAYHPALLLSLLIYGYATGTHSSRKIERATYDSLAFRFIACDQHPDHDTLATFRRRFGDQFADAFVQVLQVARENQLSRFGTVSLDGTKIHANASRHSALSYGHAEKIEAQLKAEVQEMLALAEAADRSCVPEGVDLPAEIQRREDRLAAIAAAKAKIEARAKERFEREQAEFDAKLAKRQAKAAATGKKPGGKPPTPPAPGPRADDQLNLTDEDSRIMKVTGGGFEQCYNAQALVDTESMLVMVPHLTQAGNDKEQVEPMLARIAALPEGLNQPDQLLADTGFFSERNVERCQAAGIEPLIAVGRDEHHPDWRRRFEEPAPLEQPASPVEQMKHALKTRAGRAAYALRKQTVEPVFGIIKSVMGFRQFLLRGLDNVRAEWTLVCLAWNLKRMAVLRPQ
>NC_006513.1|WP_049780240.1|1941149_1941431_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKAFTARDLRERTAQVVRVAEEGKMSVVTKRGKPAFVAVPFDEALLESGVRTSLAIRLFDDGKLTLGQAARFAGGAVEEMIDRAATACQAGKA
>NC_006513.1|WP_049780362.1|1940140_1940842_-|N-acetylmuramoyl-L-alanine-amidase
MTGLMGAAALAITLSAHAGTGKAPFVAVDIGHTLAAPGATSARGRAEFEFNRDLALQVSAALERLDVRTELVNAEGTIESLAARPAQVPTADFFLSIHHDSVGESELEYWEWQGETQRYSDRWAGHSLFVSRRNPDLERSVLCAVTIGARLQRAGFVPTEKNGRRREYADRQHAVHFYDNLVVLYRARQPAVLFEAGVIKHRDEELLLRDPQRQALMAGEIATGLAACLGAGR
>NC_006513.1|WP_011237663.1|1938452_1940099_+|peptide-chain-release-factor-3
MADIPAATPSATPFPPELLRDVERRRTFGIISHPDAGKTTLTEKLLLFGGAIQLAGTVKARKSARHATSDWMEVEKQRGISVSSSVMQFEYAGHTINLLDTPGHQDFSEDTYRVLTAVDAAVMVIDAAKGVETQTIKLLEVCRLRNTPIITFINKMDREVRESFDLLQEIEEVLKIDCAPITWPIGMGKTFRGVYHLLEDRVLRFTPGEEKRSEAEVIKGIANAQLDELFPLEVGKLREEVDLIQGASNPFSLGDFLAGKQTPVFFGSGINNFGVQEILQALLDWAPPPQPRVAGVTVADTRLVMPAEAPFSGFVFKIQANMDPKHRDRIAFFRICSGRYSSGMKVKHVRMGREMKLANALTFMANERVLMEDGVAGDIIGIHNHGQLHIGDTLTEGENLGYKGIPYFSPELFSAARLRDPLKSKQLQKGLQELGEEGAIQVFEQEGGNMLLGAVGQLQFEVVAQRLKDEYKVDAIFESADIYTARWLVFPDEVTRRNFEREQGIRVGKDVDGNPVYLATSRYNLEVTMEKWPKVGFHATREHGEKLS
>NC_006513.1|WP_041646099.1|1938045_1938303_-|hypothetical-protein
MSRATPTLRQRKIFALTRILAGLVAACYLGYVVVANLAAGLPFDRTLLFTALVSAAGFAYAAWYLRELSAVAREEREGGGTDKSR
>NC_006513.1|WP_011237662.1|1937225_1937993_+|TerC-family-protein
MIELLTDPQLIFAFLTLTVLELVLGIDNIIFISILVDKLPPERRAFARRLGLFLAMFMRLALLSLLAWLASLNRALFEVFGHGFSARDLILLLGGLFLVWKSTGEIHQLMEGEEGEASSAVKATFAAVITQIIVIDLVFSLDSIITAIGMVDNLAVMIAAVVASVGLMMVASGPIGDFVSAHPTVKMLALSFLMVIGVVLLAEGFGHHVPKGYIYSAMAFSVVVEMLNIRMRKRAAHPVDLREPYVAEKVAAKRA
>NC_006513.1|WP_041646097.1|1936869_1937094_+|glycine-zipper-2TM-domain-containing-protein
MNIRTGVSAIVLAIAASGCATWDDMSSRERSAVIGAGVGGTAGAVVSDGGVLGTVGGAAIGGVIGDQIGKRRHP
>NC_006513.1|WP_083782955.1|1935599_1936517_-|TonB-dependent-receptor-plug-domain-containing-protein
MTISRTARCLWVPFASCTIATCAGAGEVPYLEELPHVLSASRLPQPLHEAPGAVTVIDHELLTATGYRDLARVFRLVPGMQIGQERGHAQWVTYHGLSNDFPTEMQVLIDGRSVITPSAFGGVDWSALPLTLDEIDRIEIVRGTNAASFGANAFLGVINIITRHSAEGAGTGGALRVGSGGVRDAEASWTNSGGSPVSLRVNAASRRDDGFDGVHDAHHMDIATLRGDWQLSSQDSVTLRAGASAGRRGEGYTESVFGNNGPRDTRSHTTTLHLKGRHAVGDGEEWMLNYYHTHERAPRITRGLQ
>NC_006513.1|WP_041646101.1|1953762_1954053_-|CRISPR-associated-endonuclease-Cas2
MLVIVCYDVNTETRAGRRRLRRIARICEGVGQRVQKSVFEFQISVVQFEELERRLLDEIDLTQDNLRLYRLPDSRGTEVREHGIFRTTDFEGPLVL
>NC_006513.1|WP_011237667.1|1954057_1955086_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MQLLNTLYVTTPESYLHLDNDTLRVEVERETRLRVPLHHLGGVVCMGNVMLSTPLMHRLAGDGIGLVLLDGNGRFKARLEGPVSGNVLLRRAQHIQSADTDFALQFARSCIAGKIRNARQMLLRGARDARNEEESARITRAAEDLAAALRSVPGSGDADILRGVEGEAARQYFAALNLLVREDARPVFQMDGRSRRPPRDRMNALLSFLYSMLMNDCRSAVEAAGLDPQVGFLHVLRPGRAALALDLMEEFRPFADRLALTLINRGQIAGDDFVERAGGAVLLEGDARKAVVVAWQERKQEELTHPLLAQAIPLGVVPLVQARLMARTVRGEMDTYLPFLVR
>NC_006513.1|WP_011237668.1|1955088_1955721_-|CRISPR-associated-protein-Cas4
MDTPDPIPLSALQHWRYCPRQCALIHLEQAFEENIHTLRGQAVHAQVDQPGVEVRAGLRVERALPVFSDRLGLIGKADVVEFLADGTPYPVEYKHGARNKKAEIAACDDLQLAGQALCLEEMTGRPVPEGALFYASSKRRRVVPITPELRAEVEATAAAIRNMLAAGRTPPPVNNERCPGCSLRELCQPGALAARDTQADFARHLFDLDA
>NC_006513.1|WP_041646102.1|1955775_1956018_+|addiction-module-protein
MSFTLESVTAEALKLTPDERAELIETLLASVEPTMPLHPEWEAEIERRVADMDAGRTTPIPGEEVFAKVRALIAAHDQKA
>NC_006513.1|WP_041646104.1|1956014_1956305_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRYVFTPAAQQELIDAVRWYLGEAGTVTAERFESAVYSAVRFLARMPRLGTSAYRRFRLWSVKDFPYTLVYRIEAEGISVIALAHQSRAPGYWRKR
>NC_006513.1|WP_011237670.1|1956370_1957213_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQNKIDFAVVIRVKHANPNGDPLNGNRPRTDYGGLGEITDVCLKRKLRDRLQETGHAIFVQSDDRKIDGEPSLRTRAESEKNGLGKEAFKKGAKREETAKKACEKWFDVRAFGQVFAFGKGDDANGVSIPIRGPLTIQSAFSKEPVSITSTQITKSVSGEGDGSKRGSDTMGMKHRVDSGIYECFGSINPQLAERTGFSDADAETIKTILPKLFENDASSARPDGSMEVLKVVWWKHNCKAGQYSSAKVHRLLKVSPDGTINLSRLDGLEAEEIDGF
>NC_006513.1|WP_011237671.1|1957230_1959063_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWIQKLYETYERCANAPELTGPQPWPIAHLVKRAHVEVAIDAEGNFRRAQKLDRLQSPTLIPATEASAGRTAGVAAHPLCEEIGYCAADYPGLEANRYSDYEKQLEQWCSSEFSHPKARAIYAYLRKGLLWSDLNAHKIFPVAIEDAHGKKTKVKDEKVFLRWRVETPGEFCSGTWEDDDLIDAWISFDRAQNHENNICIVTGATARIGRNHSRFLRHPGDGAKLISVNDAEGYTFRGRFTDGKNEYGKQACSVGFETSQKAHNALRWLIARQGYRNGDQAVVSWAINGTLVPDPFANTLELFGRLDLLDSEPPPADTAQAFALRLKRAIAGYRAKLDPTSDVVVMGLDSATPGRMAITFYRELKGSEFIERIEYWHTNCAWSQNFGKESRFVGAPAPRDIAEAAYGRRLDDKLRKATVERVLPCIVDSQPIPRDLVESTVRRASNRVGLENWEWEKCLGIACALFKGYHTEGSYQMALEQDRTSRDYLYGRLLAIAEHIEGRALHVAGEKRDTTAARLMQRFADRPYSTWKTIELSLAPYKTRLRAQRTGFLFEMDKLLDDVTASFPSHSFTQDSQLSGEFLLGYHCQRQALRPNSVEPADNNSDTND
>NC_006513.1|WP_011237672.1|1959059_1959788_-|type-I-C-CRISPR-associated-protein-Cas5
MTRSTRNSIEFKVWGRHALFTDPLTKVGGEKCSYHVPTYEALKGIAKSIYWKPTLIWVIDEVRVMKRVRTQTKGTKPLEFGGGNSLAIYTFLADVEYQVRAHFEWNEHRPELQADRIDGKHYAIARRMLERGGRQDIFLGTRDCQGYIEPCEFGGGAGAHDEGSELAFGLMFHGFDYPDETGDQKLHARFWRPVMRNGFIRFDRPEDCPVRKFVRSMSVKPFGFGQNLQSADEAAAELEGLA
>NC_006513.1|WP_011237673.1|1959780_1962267_-|CRISPR-associated-helicase/endonuclease-Cas3
MTKRAIDMPIAHWRASDSTPQALSGHLSNVGGLARAYAAKLGLESAGEVIGLLHDLGKYSEEFQAYIGSALGLIDTDDDEYVDAGVLKGKVDHSSAGAQYVWQALCQKGRLERFCAQILAICIASHHSGLIDCISADAGTFGEDTFDKRMRKLQERTHLDEARHSADAEILARCKELLDNAELSACVRAVVEQILRASPQKRVAQQQIGLATRFLFSCLIDADRVDTADFEHKRVREYRSNGEYVAWSVLIDRLERHLQVIRSDRPIDALRREISQHCLDAASRERGTYTLTVPTGGGKTLASLRFALHHAKQRRLDRIIYVIPFTSIIDQNAQVVRSILEPVDEPADHGKVVLEHHASITPEQQTWREKILCENWDAPVVYTTMVQFLEALFGAGTRGARRMHQLANAVLIFDEIQTLPIKCIHLFNNAINFLAEQCNSTVVLCTATQPLLHQVSADKGAIRLHRQHEIMPDVRKLFDDLKRVELRDRRKPGGWTYSEIAQLALEEMRRAASCLVIVNTKDAAKQVYQSCREQLDDEETLHLSTDMCPAHRKQELGRVRQRLGAGLPVLCVSTQLIEAGVDVDFGVVIRFTAGLDSIAQAAGRCNRNGRPEPGVVHIVNPQDEHLEKLPDISTGRDKAERVLDDYATHPDRYHDNLIGPEALTDYYQYYFFDRQKEMDYPVAAKDLGYDDTLLNLLSSNSQALSEHHRKTGGVPDLLLQQSFMTAARAFKAIDAPTQGVIVPYGAGGRTLIADLHAAFDVQLEIDLLRTAQQYTVNVFPHVLRQLSEASAVREVKPGTRILCLDERYYSNEFGLATEPVSRMEVLYD
>NC_006513.1|WP_049780363.1|1962767_1963583_-|IclR-family-transcriptional-regulator
MTDPIATRPAERNGDRRGIQSIEVGGALLQALVRHGTPMILKDLARDAGMPPAKAHPYLVSFGKLGLIEQDPLTGRYGLGTFSLQLGLSALHGLNPLRVATPEAAKLSDEIGQNVAIAVWGNQGATVVSIEECSRQVHVNMRVGTVMNLVTSATGRVFAAFLPARLTETLIAEELAHLACAADPSLRLSRSQFDNELEEIRRQRLARAVGQPIPGINAFCAPVFDHNGHVALTITAMGAADNFDADWSSPLAEKLRSCAESISGRLGKMEG

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Crispr_ID: NC_006513_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006513_5

2160509-2160611

Orphan

Consensus_repeat	Method
AAGCTGTTTCCTGGGGGCGCTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_006513_5

>merge|NC_006513|5|2160509-2160611|CRISPRCasFinder
AAGCTGTTTCCTGGGGGCGCTCAAGAAAACGCCGGGCCGTCCCAAGTTTTCTTGTCCCCCTCGGGGGGCGGAAACGGCAAAGCTGTTTCCTGGGGGCTCTCAA

>NC_006513|5|5|2160509-2160611|CRISPRCasFinder
AAGCTGTTTCCTGGGGGCGCTCAA	GAAAACGCCGGGCCGTCCCAAGTTTTCTTGTCCCCCTCGGGGGGCGGAAACGGCA
AAGCTGTTTCCTGGGGGCTCTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_006513.1\|WP_011237890.1\|2168496_2169222_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_006513.1\|WP_011237879.1\|2158632_2159511_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_006513.1\|WP_173361291.1\|2169560_2170154_+\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_041646170.1\|2159507_2159897_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|197364
NC_006513.1\|WP_011237884.1\|2162629_2163973_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_006513.1\|WP_011237874.1\|2153946_2155137_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180775
NC_006513.1\|WP_041646166.1\|2157445_2157628_+\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NC_006513.1\|WP_011237889.1\|2167479_2168364_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183067
NC_006513.1\|WP_011237881.1\|2160644_2161628_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176248
NC_006513.1\|WP_011237886.1\|2164712_2166200_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238461
NC_006513.1\|WP_168954315.1\|2162350_2162527_+\|hypothetical-protein	unknown	unknown	unknown
NC_006513.1\|WP_011237887.1\|2166210_2166825_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NC_006513.1\|WP_011237875.1\|2155137_2156271_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NC_006513.1\|WP_011237880.1\|2159877_2160420_+\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NC_006513.1\|WP_011237876.1\|2156330_2157122_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235664
NC_006513.1\|WP_041647143.1\|2161646_2162204_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NC_006513.1\|WP_041646168.1\|2157624_2158545_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|214854
NC_006513.1\|WP_083782960.1\|2152560_2153781_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NC_006513.1\|WP_011237885.1\|2164167_2164698_+\|cytochrome-c-oxidase	unknown	unknown	gnl\|CDD\|259983
NC_006513.1\|WP_041646164.1\|2157242_2157449_+\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738

Protein	Function_ID	Function_description	E-value
NC_006513.1\|WP_011237890.1\|2168496_2169222_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	1.10705e-161
NC_006513.1\|WP_011237879.1\|2158632_2159511_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18389e-156
NC_006513.1\|WP_041646170.1\|2159507_2159897_+\|NusG-domain-II-containing-protein	gnl\|CDD\|197364	cd09910, NGN-insert_like, NGN-insert domain found between N-terminal domain (D1) and C-terminal KOW domain (DIII) repeats of some N-Utilization Substance G (NusG) N-terminal (NGN). This family contains a unique insert (domain II, DII) found between the highly conserved N-terminal domain (NGN, domain I, D1) and C-terminal Kyrpides Ouzounis and Woese domain (KOW, domain III, DIII) repeats of some N-Utilization Substance G (NusG) N-terminal (NGN) proteins in bacteria such as Aquifex aeolicus NusG (AaeNusG). NusG was originally discovered as having an N-dependent antitermination enhancing activity in Escherichia coli, and has since been shown to have a variety of functions such as being involved in RNA polymerase elongation and Rho-termination. Orthologs of NusG gene exist in bacteria, but their functions and requirements are diverse. The function of DII is as yet unknown, and belongs to Domains of Unknown Function 1312 (DUF1312).	2.19763e-35
NC_006513.1\|WP_011237884.1\|2162629_2163973_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.09764e-131
NC_006513.1\|WP_011237874.1\|2153946_2155137_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	0
NC_006513.1\|WP_041646166.1\|2157445_2157628_+\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	5.77642e-07
NC_006513.1\|WP_011237889.1\|2167479_2168364_-\|DMT-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.07051e-14
NC_006513.1\|WP_011237881.1\|2160644_2161628_+\|oxidoreductase	gnl\|CDD\|176248	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NC_006513.1\|WP_011237886.1\|2164712_2166200_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238461	cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.	5.96128e-62
NC_006513.1\|WP_011237887.1\|2166210_2166825_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.2066e-38
NC_006513.1\|WP_011237875.1\|2155137_2156271_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NC_006513.1\|WP_011237880.1\|2159877_2160420_+\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	2.08321e-43
NC_006513.1\|WP_011237876.1\|2156330_2157122_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	5.98013e-135
NC_006513.1\|WP_041647143.1\|2161646_2162204_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.02692e-91
NC_006513.1\|WP_041646168.1\|2157624_2158545_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|214854	smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.	1.72924e-25
NC_006513.1\|WP_083782960.1\|2152560_2153781_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.04746e-114
NC_006513.1\|WP_011237885.1\|2164167_2164698_+\|cytochrome-c-oxidase	gnl\|CDD\|259983	cd13916, CuRO_HCO_II_like_1, Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.	7.56939e-60
NC_006513.1\|WP_041646164.1\|2157242_2157449_+\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	2.03996e-16

>NC_006513.1|WP_011237880.1|2159877_2160420_+|Gx-transporter-family-protein
MTPSTIEIHPSADDRRVARLATAAIVLTVAEAAIPLPLPGVKPGLGNIVILIVLLRWGWRDAVWVGLLRVFASSLLLGQLFAPGFFLSLAGSLTSLATLGVAKHLPRRWFGPVSLSVFAAFAHIGGQLALARAWLVPHDGVFYLVPVFAAAATLFGLINGLVAARLLRDRIAVPAGAGKR
>NC_006513.1|WP_041646170.1|2159507_2159897_+|NusG-domain-II-containing-protein
MSPRLADWLALLRPGDFATLVGALAVCVVSALLLWRGGAPDKAIVRAGGAVFAELSLAQPQRVDVPGPLGTTRIEVEPGRARVLSDPGPRQYCVRQGWLSRAGAVAICAPNEVSLSLSGGAADYDSLNY
>NC_006513.1|WP_011237879.1|2158632_2159511_+|RNase-adapter-RapZ
MQIVLISGLSGSGKSIALKVLEDVGYYAVDNLPATLLPELVAELSDTGHERVAIAVDVRSGASLLALPQQVEHLHALASDLRLIFLDARDDTLIARFSETRRRHPLASEDVSLAEAIQSERDALASIAELGHRIDTSELHANTLRAWIKDFLAIEATEGLTLMFQSFGFKYGIPLDADLVFDVRCLPNPHYDLRLRPFTGKDQPVIEFLDSFPEVGRMCEDIRRFVATWLPSYARDNRSYLTVAIGCTGGQHRSVYIAEWLGRHFSDTLRVLVRHRSAARRIVDHGADMADK
>NC_006513.1|WP_041646168.1|2157624_2158545_+|MBL-fold-metallo-hydrolase
MSAAAKLPATVAVLERGWLSSNNVVLFDDGEATLIDSGYVSHAAQTVALLHRTLDGRCLGRLINTHSHSDHIGGNAAVQRAFGCAITVPAGMAGAVAEWDEAALLLSTAEQAGERFHADGVLAAGETVGMGGLTWQILEAPGHDMDALVFHNADRRILISGDALWRDGFGILFADVLGTGDGIGAARRTLEAIARLPVDVVIPGHGAPFVEFDDALARAFARLKAFEDDGARMARNAIRACMTFSLLDLRSIALDELPEHLARVPLYREANARFLGQSPAALADWLVAELSRAGVARCEGGRLVAA
>NC_006513.1|WP_041646166.1|2157445_2157628_+|DUF1289-domain-containing-protein
MSDELCVGVCMIDWDSGVCLGCGRTPEEIDGVPVAPAPAQTPAKVPLPANVAAQVGEGSQ
>NC_006513.1|WP_041646164.1|2157242_2157449_+|DUF1289-domain-containing-protein
MSPTSPCINLCRIDAGTGYCEGCFRTLDEIARWSRHADVEKHRILEAVDRRRAQVPGAASAARAEQAR
>NC_006513.1|WP_011237876.1|2156330_2157122_+|enoyl-CoA-hydratase/isomerase-family-protein
MYETLEIRTEGGVATIWMNRPDVHNAFNAQLIADLTASCRELDADDTVRVVVLAGRGKSFSAGADLNWMKAAAAASVEDNLDDARRLADMLHTISAMGKPTIARVQGAALGGGMGLASACDICVAAEQAVFATSEVKFGIIPAAISPYVIRAIGERQAYRYFQTAERITAARAGEIGLAHEVVAAEALDAKIAEIVTALLQGGPKAQAAAKDLIRNVANRPLGEAVVEDTARRISSLRATPEAKEGLDAFLAKRPAAWVSQQG
>NC_006513.1|WP_011237875.1|2155137_2156271_+|acyl-CoA-dehydrogenase
MILTQEQEMIRDSLRAFAQERLAPFAAEWDRNHTFPREALKELAELGALGMVVPEQWGGAGMDYVSLVLALEEIAAGDGATSTIVSVQNSLACGIPNRYGSDAQKEQWLKPLASGRMLGCFCLTEPHVGSDASALKTTAVRDGDSWVINGVKQFITTGREADVAIVFAVTDKTAGKKGISCFLVPTNTPGYIVARIEEKMGQKASDTAQILFEDCRVPADALLGAEGEGYRIALSNLEAGRIGIAAQCLGMARAALEAAVKYAHERETFGKPIFEHQAVNFRLADMATQLEAARQLVWHAASLKDAGRPCLKEASMAKLFASEMAEKVCSDAIQVHGGYGYVTDFPVERIYRDVRVCQIYEGASDIQRLVIGRALAA
>NC_006513.1|WP_011237874.1|2153946_2155137_+|acetyl-CoA-C-acetyltransferase
MNDPVVIVSAARTPLGGFQGDLSALSGPQLGAVAIRAAVERAGVNAEAVQEVLMGCVLPAGVGQAPARQAALGAGLPLSAGCTTVSKVCGSGMKSVMLAHDLLVAGTNDVMVAGGMESMSNAPYLLPKARGGYRLGHGQVLDHMFLDGLEDSYSKENKGRLMGTFAEDCAAHFDFTRAAQDEFAVASTTRAQKAIQDGSFAWEVAPVTVTGRKGDVVVDKDEQPPKAQIDKIAGLKPAFRKDGSVTAANSSSISDGAAALVLMRRSTADRLGLKPLATIVGHATHAQDPAWFTTAPVGAMQKVLAKAGWSKDDVDLWEINEAFAVVTMAAMKELELPHDKVNVHGGACALGHPIGASGARIIVTLLGALKQYDKKRGVASLCIGGGEATAVAVELA
>NC_006513.1|WP_083782960.1|2152560_2153781_+|carbonate-dehydratase
MAGRKGSSCFGRRGVAAVLQAKLKEFSVPVELRVLGADDRVCLDHVRQFFRNYAGSIGVDLCFQGFGDEMASLPGAYGAPQGRLFYAEIDRQPAGCVGIRPFSDGICEMKRLYVEPALRGLGVGRELVLAAIRAAKEIGYRRILLDTLPTMRIAVKLYRELGFTEAPAYYPTPIEGTLFLALDLDNWSEEEVANENLFHLFDYNRAWARQMQQIDPGFFEKLSKLQSPEYLWIGCSDSRVPANQIIGLLPGEVFVHRNVANVVVHTDLNCLSVIQFAVDVLKVRHIMVVGHYGCGGVKAALGRERIGIVDLWLRHVQDVHVKHRQAVDGLPPELAHDRLCELNVLEQVVNVAQTVVVQDAWKRGQPLAVHAWIYGLKNGLVRDLGLNVTRPEDLVPRYVAALETLA
>NC_006513.1|WP_011237881.1|2160644_2161628_+|oxidoreductase
MFKAVLIEKDDAGYRATLTDVDDAGLPDGDVTVRVAYSTLNYKDALAITGKGPVVRKFPMVPGIDLAGTVEHSSHPECRAGDLVVLNGWGVGEGHWGGLAEKARLAGDWLVPLPAAFSPKQAMAIGTAGYTAMLCVMALERHGVTPDQGEVLVTGASGGVGSVAVSLLAKLGYRVVASTGRPNEAEYLKALGAAEIIDRVQFSMPGKPLAKERWTGAIDTAGSHTLANVCASMKYRGVVAACGLAQGMDFPATVAPFILRGVTLAGVDSVYCPRPERLEAWQRLARDLDPAHLDLISHEVSLADVIRLSGELLAGQVRGRLIVDVNR
>NC_006513.1|WP_041647143.1|2161646_2162204_-|crossover-junction-endodeoxyribonuclease-RuvC
MKSASTVVATRILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTRDGELPGRLKTLLDGVREVVAAYTPDQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQVQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGRRRAGRILVAPDPG
>NC_006513.1|WP_168954315.1|2162350_2162527_+|hypothetical-protein
MIPQVDRVYVVELCSGELRRWRFLGLDRRESAWWRDEETGRTFSEASLMYVWEIVAEA
>NC_006513.1|WP_011237884.1|2162629_2163973_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPSLATLRVFLDSLEEGVLFLDRARRVLEMNSAAARMIGHDNRRLVDELCPTLFEGTECARACVARGECSLTPTKGEDKVQDIVVRSPTGVDIPLRMWAMLLPPNDSGLYCAIVLRDRSRELELEAEVRDRWQLGGLTGRSRAMQDLYQKVLRVAASEANVLITGESGVGKELVARALHDNSTRAKGPYVAVHCASLPENLEESELFGHAKGSFSGATGARLGRFEAANGGTLLLDEIGEISPATQTRLLRVLQEREIVRVGENHPRKVDVRVVAATHRDLAGMVGRGEFREDLYYRLHVLPLHVPALRERREDIALLASRLLGELGERYRRPDLRLSPEAIVAMESFSWPGNVRQLFNALEYAVVNSDGATILPQHLLPEVVTPVESTREALLPLPLTRYYATQVTPDEEQAQIQRMLQQCGGNRAEAARRLGMSRTTLWKRLNRS
>NC_006513.1|WP_011237885.1|2164167_2164698_+|cytochrome-c-oxidase
MQPIAWQISLVLMALVAFGFAFVAINSGRRQEDYSPLQKSAYRLRSRLFWGLVLVFGPAMIYTLFELPYDAARANTGAGPVQVVDATGYQWRWELSQDQFAVGQPVEFRVTSADVNHGFGIYDANLHLVAQTQAMPGYTNTLRHTFSEEGTYKILCMEYCGLAHHNMLTEIRVGAQ
>NC_006513.1|WP_011237886.1|2164712_2166200_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MATYTYEHIPDQGAKAGVLAYLATSAVVLLLMMVFGLLMRLEQAQWISIGAIRFYELMTLHGAGMVGIAAIAGASIMWHFLRQYVDLSSRIFVANLVLFLVGVVMILGSVLLGHFHGAWTFLYPLPGKSMGLWSPGAAALFMGGMLVIGVGFLLLHLDIARALVGRYGNFSRALGWPQLFGHDDGNAPPPTVVASAMVTVVNVVGLVVGASILAMMLVNLYVPEFDIDPLLAKGMIYFFGHIFINATIYMAVIGVYEILPRYTQRPWKSNKVFLASWTASTLMVMFIFPHHLLMDFAFPKWMLIMGHIIGYLNTVPILVVTGYGALMIVYRSGIRWDMASKLLFLSLFGWAAGAMPAFIDGTITVNYVMHNTLWVPGHFHTYLLLGMVTMVFGFMYYLGKPSHEHDDHLVDRIAFWLFTSSVLGFTMSFLYSGKESVARRYAAHLPEWVPYDRIASVFAVLVIASSLVFIGRFFARIGLARHDYQRAPVARSVTA
>NC_006513.1|WP_011237887.1|2166210_2166825_+|SCO-family-protein
MSAAARSVVLTVLVAVLGTGAFWGGTDGFSAFTAETARRADILRAPRPLPAAVLEDQDGRVFRLDDYRGRLLAVEFIYTRCTTICRSLGTAFKQIRDRVPPDALGREVALLSISFDPERDDPASLKAYGSGHGADGEHWRIARVRDAAQLQALLKAFGVVVIADRFGGFEHNAAIHLVARDGRLVEISDLEAPLQFAQKLAEAL
>NC_006513.1|WP_011237889.1|2167479_2168364_-|DMT-family-transporter
MPTLPPSLTAAAPLLFVLLWSTGFIGAKFGLPYAEPLTFLSTRYVLVIALMAVLALATRARWPKDWRQAAHIGVAGLLVHATYLGGVFMTLHRGLPTGVAALVVGMQPLLTALGAGWLLGERVSTRQWAGLALGFIGVTLVVSNKVAFGNGSSAQLGWMLAPALAALAGITAGTLYQKRFCPSFDLRTGSVIQFVPCLLITAYFASRTETMQIDWSGEFVFAMLWLVLVLSLGAISLLNLLIRSGSAVNVASLFYLTPPTTALMAWLLFGETLTGFALAGMVIAVSGVWLARKV
>NC_006513.1|WP_011237890.1|2168496_2169222_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANIQHRKGRQDAKRGKVFTKLIKEITVAARMGGGDPNFNPRLRLAVDKAKAENMPSENIDRAIKRGTGELDGVSYEEARYEGYGIGGAAVMVDCLTDNKTRTVADVRHAFSKNGGNMGTDGCVAFQFKHCGQLMFAPGTSEDALMEAALEAGAEDVVTNDDGSIEVITAPYEYSNVKDALEKASFRAEFGEVTMKPQNETELSGGDAERMQKLLDALESLDDVQEVYTSAVMDE
>NC_006513.1|WP_173361291.1|2169560_2170154_+|hypothetical-protein
MPFVPRRVFLFSGHRIDTPERRTPRFPAGQEAVAARCIAEALDAWEAGAGDLALAQGASGGDILFLEACRARGLHLQILLPLDEPQFVERKILPSVDGERWRERYQALKAGLASPPLVMPARPLTLAHFAVPEGAGPCERCNLWSLDLALRWGADRLRFLCLWNGGGADGDGGTAHLYREAKRRSAPVTWLDTRSLW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_006513_5	5.1\|2160533\|55\|NC_006513\|CRISPRCasFinder	2160533-2160587	55	NC_006513.1	3832959-3833013	1	0.982

1. spacer 5.1|2160533|55|NC_006513|CRISPRCasFinder matches to position: 3832959-3833013, mismatch: 1, identity: 0.982

gaaaacgccgggccgtcccaagttttcttgtccccctcggggggcggaaacggca	CRISPR spacer
gaaaacgccgggccgccccaagttttcttgtccccctcggggggcggaaacggca	Protospacer
***************.***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006513_4	4.3\|1952786\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952786-1952820	35	JQ182730	Enterobacteria phage mEp237, complete genome	26156-26190	4	0.886
NC_006513_4	4.3\|1952786\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952786-1952820	35	NC_019717	Enterobacteria phage HK225, complete genome	25649-25683	4	0.886
NC_006513_2	2.36\|1944038\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944038-1944072	35	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1954292-1954326	5	0.857
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	NZ_CP012478	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence	47604-47637	6	0.824
NC_006513_2	2.17\|1942664\|33\|NC_006513\|CRISPRCasFinder,CRT	1942664-1942696	33	NC_013531	Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence	52337-52369	6	0.818
NC_006513_2	2.28\|1943455\|35\|NC_006513\|CRISPRCasFinder,CRT	1943455-1943489	35	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	55906-55940	6	0.829
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	281128-281161	6	0.824
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	5023-5056	6	0.824
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	241155-241188	6	0.824
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	50567-50600	6	0.824
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	MT889387	Arthrobacter phage DanielleIgnace, complete genome	58275-58308	6	0.824
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP035709	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt12, complete sequence	71784-71817	6	0.824
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_MG651603	Chromobacterium violaceum strain ATCC 12472 plasmid pChV1, complete sequence	20447-20480	6	0.824
NC_006513_2	2.1\|1941502\|35\|NC_006513\|CRISPRCasFinder,CRT	1941502-1941536	35	MT310853	Microbacterium phage AvGardian, complete genome	12609-12643	7	0.8
NC_006513_2	2.17\|1942664\|33\|NC_006513\|CRISPRCasFinder,CRT	1942664-1942696	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	424671-424703	7	0.788
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	MH651168	Gordonia phage Ashertheman, complete genome	56580-56613	7	0.794
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP029178	Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed2, complete sequence	41088-41121	7	0.794
NC_006513_2	2.40\|1944326\|36\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944326-1944361	36	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	662100-662135	7	0.806
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP052865	Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence	79130-79163	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP047317	Burkholderia glumae AU6208 plasmid pwszb, complete sequence	46628-46661	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	AF068845	Mycobacteriophage TM4, complete genome	30784-30817	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NC_003387	Mycobacterium phage TM4, complete genome	30784-30817	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP009433	Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence	158962-158995	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	77240-77273	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP045091	Burkholderia glumae strain GX plasmid pWSGX3, complete sequence	91214-91247	7	0.794
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	KC787101	Mycobacterium phage 33D, partial genome	17596-17629	7	0.794
NC_006513_2	2.46\|1944758\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944758-1944791	34	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	227271-227304	7	0.794
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	101113-101146	7	0.794
NC_006513_3	3.26\|1950327\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950327-1950360	34	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2105207-2105240	7	0.794
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1039820-1039853	7	0.794
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP031370	Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_3, complete sequence	13058-13091	7	0.794
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP031371	Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_4, complete sequence	15359-15392	7	0.794
NC_006513_4	4.4\|1952858\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952858-1952892	35	MH622939	Siphoviridae sp. isolate ctbf_3, complete genome	12660-12694	7	0.8
NC_006513_2	2.17\|1942664\|33\|NC_006513\|CRISPRCasFinder,CRT	1942664-1942696	33	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1213149-1213181	8	0.758
NC_006513_2	2.17\|1942664\|33\|NC_006513\|CRISPRCasFinder,CRT	1942664-1942696	33	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	518053-518085	8	0.758
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	746935-746968	8	0.765
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	NC_048098	Arthrobacter phage Andrew, complete genome	9611-9644	8	0.765
NC_006513_2	2.28\|1943455\|35\|NC_006513\|CRISPRCasFinder,CRT	1943455-1943489	35	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	13114-13148	8	0.771
NC_006513_2	2.28\|1943455\|35\|NC_006513\|CRISPRCasFinder,CRT	1943455-1943489	35	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	170562-170596	8	0.771
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	178979-179012	8	0.765
NC_006513_2	2.36\|1944038\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944038-1944072	35	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	333587-333621	8	0.771
NC_006513_2	2.36\|1944038\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944038-1944072	35	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	173113-173147	8	0.771
NC_006513_2	2.39\|1944255\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944255-1944288	34	NZ_CP023524	Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence	63516-63549	8	0.765
NC_006513_2	2.39\|1944255\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944255-1944288	34	NZ_CP033429	Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence	49377-49410	8	0.765
NC_006513_2	2.41\|1944399\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944399-1944432	34	MK977705	Gordonia Phage Mollymur, complete genome	60954-60987	8	0.765
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	MH834601	Mycobacterium phage BoostSeason, complete genome	31045-31078	8	0.765
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NC_028759	Mycobacterium phage Mufasa, complete genome	31035-31068	8	0.765
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP052134	Burkholderia glumae strain HN plasmid pbghn2, complete sequence	40687-40720	8	0.765
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	121454-121487	8	0.765
NC_006513_2	2.50\|1945045\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945045-1945079	35	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	233987-234021	8	0.771
NC_006513_3	3.20\|1949897\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949897-1949930	34	NC_047861	Bordetella phage vB_BbrM_PHB04, complete genome	63815-63848	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	575256-575289	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	115651-115684	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP050991	Chromobacterium violaceum strain FDAARGOS_635 plasmid unnamed, complete sequence	33423-33456	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1740560-1740593	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_LR536451	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2	49083-49116	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	135808-135841	8	0.765
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_LR134446	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 4, complete sequence	84500-84533	8	0.765
NC_006513_4	4.4\|1952858\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952858-1952892	35	NZ_LR594664	Variovorax sp. RA8 plasmid 3	31659-31693	8	0.771
NC_006513_2	2.1\|1941502\|35\|NC_006513\|CRISPRCasFinder,CRT	1941502-1941536	35	MH632120	Mycobacterium phage Thonko, complete genome	51439-51473	9	0.743
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	NZ_CP029453	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence	50682-50715	9	0.735
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	NZ_CP023069	Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence	50757-50790	9	0.735
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	NZ_CP029233	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence	52847-52880	9	0.735
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	MT024862	Microbacterium phage Alakazam, complete genome	32704-32737	9	0.735
NC_006513_2	2.12\|1942300\|34\|NC_006513\|CRISPRCasFinder,CRT	1942300-1942333	34	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	68862-68895	9	0.735
NC_006513_2	2.17\|1942664\|33\|NC_006513\|CRISPRCasFinder,CRT	1942664-1942696	33	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1082963-1082995	9	0.727
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	84905-84938	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC105987	Pseudomonas phage KPP22 DNA, complete genome	28823-28856	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC102730	Pseudomonas phage S12-1 DNA, complete genome	44151-44184	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC472883	Pseudomonas phage S12-3 DNA, complete genome	44151-44184	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	MN131142	Pseudomonas virus PA8P1, complete genome	52078-52111	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC105988	Pseudomonas phage KPP22M1 DNA, complete genome	28823-28856	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	MN131143	Pseudomonas virus PA11P1, complete genome	52339-52372	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC105990	Pseudomonas phage KPP22M3 DNA, complete genome	28823-28856	9	0.735
NC_006513_2	2.27\|1943384\|34\|NC_006513\|CRISPRCasFinder,CRT	1943384-1943417	34	LC105989	Pseudomonas phage KPP22M2 DNA, complete genome	28823-28856	9	0.735
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	295259-295292	9	0.735
NC_006513_2	2.32\|1943742\|34\|NC_006513\|CRISPRCasFinder,CRT	1943742-1943775	34	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	808742-808775	9	0.735
NC_006513_2	2.32\|1943742\|34\|NC_006513\|CRISPRCasFinder,CRT	1943742-1943775	34	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	133172-133205	9	0.735
NC_006513_2	2.32\|1943742\|34\|NC_006513\|CRISPRCasFinder,CRT	1943742-1943775	34	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	11477-11510	9	0.735
NC_006513_2	2.32\|1943742\|34\|NC_006513\|CRISPRCasFinder,CRT	1943742-1943775	34	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	56746-56779	9	0.735
NC_006513_2	2.32\|1943742\|34\|NC_006513\|CRISPRCasFinder,CRT	1943742-1943775	34	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	50266-50299	9	0.735
NC_006513_2	2.36\|1944038\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944038-1944072	35	NZ_CP011667	Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence	23386-23420	9	0.743
NC_006513_2	2.36\|1944038\|35\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944038-1944072	35	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	220018-220052	9	0.743
NC_006513_2	2.39\|1944255\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944255-1944288	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	237336-237369	9	0.735
NC_006513_2	2.41\|1944399\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944399-1944432	34	NZ_CP044329	Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence	190547-190580	9	0.735
NC_006513_2	2.41\|1944399\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944399-1944432	34	NZ_CP034087	Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence	321816-321849	9	0.735
NC_006513_2	2.44\|1944614\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944614-1944647	34	KJ510412	Mycobacterium phage ZoeJ, complete genome	30802-30835	9	0.735
NC_006513_2	2.46\|1944758\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944758-1944791	34	MT613935	Pseudomonas phage Persinger, complete genome	27820-27853	9	0.735
NC_006513_2	2.54\|1945334\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945334-1945367	34	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1271467-1271500	9	0.735
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	NZ_CP024652	Escherichia coli strain BH100 substr. MG2014 plasmid pBH100-1, complete sequence	38298-38331	9	0.735
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	NZ_CP025139	Escherichia coli strain BH100L substr. MG2017 plasmid pBH100alpha, complete sequence	43222-43255	9	0.735
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	NZ_CP025253	Escherichia coli strain BH100 substr. MG2017 plasmid pBH100-1, complete sequence	38302-38335	9	0.735
NC_006513_2	2.60\|1945764\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1945764-1945797	34	NZ_CP025254	Escherichia coli strain BH100L substr. MG2014 plasmid pBH100alpha, complete sequence	38296-38329	9	0.735
NC_006513_2	2.64\|1946053\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1946053-1946086	34	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	44976-45009	9	0.735
NC_006513_3	3.9\|1949113\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949113-1949146	34	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	145119-145152	9	0.735
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	CU468217	Azospirillum brasilense bacteriophage Cd, complete genome	60899-60931	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NC_010355	Azospirillum phage Cd, complete genome	60899-60931	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	590366-590398	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	443035-443067	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	178194-178226	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	499798-499830	9	0.727
NC_006513_3	3.15\|1949543\|33\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949543-1949575	33	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	184709-184741	9	0.727
NC_006513_3	3.17\|1949684\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949684-1949717	34	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	396730-396763	9	0.735
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1172474-1172507	9	0.735
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	246952-246985	9	0.735
NC_006513_4	4.7\|1953073\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953073-1953106	34	MG869620	Polaromonas sp. H6N plasmid pH6NP1, complete sequence	34423-34456	9	0.735
NC_006513_4	4.8\|1953144\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953144-1953178	35	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1652688-1652722	9	0.743
NC_006513_4	4.8\|1953144\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953144-1953178	35	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	160570-160604	9	0.743
NC_006513_2	2.1\|1941502\|35\|NC_006513\|CRISPRCasFinder,CRT	1941502-1941536	35	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	337003-337037	10	0.714
NC_006513_2	2.2\|1941574\|35\|NC_006513\|CRISPRCasFinder,CRT	1941574-1941608	35	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	122617-122651	10	0.714
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NZ_CP053565	Pseudonocardia sp. Gen01 plasmid unnamed1, complete sequence	43960-43993	10	0.706
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NZ_CP018232	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence	220694-220727	10	0.706
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	250552-250585	10	0.706
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	NC_048068	Microbacterium phage OneinaGillian, complete genome	61066-61099	10	0.706
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	MH669000	Gordonia phage Ali17, complete genome	23963-23996	10	0.706
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	MN586026	Gordonia phage Leonard, complete genome	24685-24718	10	0.706
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NC_031112	Gordonia phage Phinally, complete genome	24682-24715	10	0.706
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	MN369745	Microbacterium phage Kaijohn, complete genome	14888-14921	10	0.706
NC_006513_2	2.30\|1943599\|34\|NC_006513\|CRISPRCasFinder,CRT	1943599-1943632	34	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	103197-103230	10	0.706
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	283614-283648	10	0.714
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	229039-229073	10	0.714
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	841573-841607	10	0.714
NC_006513_2	2.70\|1946488\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1946488-1946521	34	CP006583	Mesorhizobium huakuii 7653R plasmid pMHb, complete sequence	97904-97937	10	0.706
NC_006513_3	3.20\|1949897\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949897-1949930	34	NZ_CP034347	Roseovarius sp. MME-070 plasmid pMME07001, complete sequence	50719-50752	10	0.706
NC_006513_3	3.27\|1950398\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950398-1950431	34	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	453148-453181	10	0.706
NC_006513_4	4.4\|1952858\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952858-1952892	35	NZ_CP017564	Paraburkholderia sprentiae WSM5005 plasmid pl3WSM5005, complete sequence	84066-84100	10	0.714
NC_006513_4	4.4\|1952858\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1952858-1952892	35	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	543535-543569	10	0.714
NC_006513_4	4.7\|1953073\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953073-1953106	34	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	260623-260656	10	0.706
NC_006513_4	4.13\|1953504\|35\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953504-1953538	35	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	425741-425775	10	0.714
NC_006513_2	2.1\|1941502\|35\|NC_006513\|CRISPRCasFinder,CRT	1941502-1941536	35	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	524484-524518	11	0.686
NC_006513_2	2.20\|1942880\|35\|NC_006513\|CRISPRCasFinder,CRT	1942880-1942914	35	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	347586-347620	11	0.686
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	MT553342	Microbacterium phage Kelcole, complete genome	62175-62208	11	0.676
NC_006513_2	2.23\|1943096\|34\|NC_006513\|CRISPRCasFinder,CRT	1943096-1943129	34	MT310894	Microbacterium phage Tempo, complete genome	62232-62265	11	0.676
NC_006513_2	2.24\|1943167\|36\|NC_006513\|CRISPRCasFinder,CRT	1943167-1943202	36	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1777543-1777578	11	0.694
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1097972-1098006	11	0.686
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	316386-316420	11	0.686
NC_006513_2	2.34\|1943885\|35\|NC_006513\|CRISPRCasFinder,CRT	1943885-1943919	35	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1034399-1034433	11	0.686
NC_006513_2	2.39\|1944255\|34\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1944255-1944288	34	NC_015970	Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence	57413-57446	11	0.676
NC_006513_2	2.69\|1946412\|39\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1946412-1946450	39	NZ_CP038640	Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence	29462-29500	11	0.718
NC_006513_2	2.69\|1946412\|39\|NC_006513\|CRISPRCasFinder,CRT,PILER-CR	1946412-1946450	39	NC_019320	Variovorax sp. DB1 plasmid pDB1, complete sequence	28536-28574	11	0.718
NC_006513_3	3.26\|1950327\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1950327-1950360	34	NZ_LR723671	Rhizobium flavum strain YW14 plasmid 2	206688-206721	11	0.676
NC_006513_4	4.6\|1953002\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1953002-1953035	34	NZ_CP043850	Micrococcus luteus strain NCCP 15687 plasmid unnamed, complete sequence	66806-66839	11	0.676
NC_006513_3	3.19\|1949826\|34\|NC_006513\|PILER-CR,CRISPRCasFinder,CRT	1949826-1949859	34	NZ_CP033227	Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence	347643-347676	12	0.647

1. spacer 4.3|1952786|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to JQ182730 (Enterobacteria phage mEp237, complete genome) position: , mismatch: 4, identity: 0.886

gtcggc-gactgcctggccatcaccatgcaggcgat	CRISPR spacer
-ccggcagactgcatggccatcatcatgcaggcgat	Protospacer
 .**** ****** *********.************

2. spacer 4.3|1952786|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_019717 (Enterobacteria phage HK225, complete genome) position: , mismatch: 4, identity: 0.886

gtcggc-gactgcctggccatcaccatgcaggcgat	CRISPR spacer
-ccggcagactgcatggccatcatcatgcaggcgat	Protospacer
 .**** ****** *********.************

3. spacer 2.36|1944038|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.857

cccgagatcctcgccgcggacctgatcgtcagcca---	CRISPR spacer
cccgagatcgtcgccgcggacctgctcg---gccaagc	Protospacer
********* ************** ***   ****

4. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.824

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
tctggaccgcttaccagcagatcaaggatcagct	Protospacer
 ***** ***.*****************. * **

5. spacer 2.17|1942664|33|NC_006513|CRISPRCasFinder,CRT matches to NC_013531 (Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence) position: , mismatch: 6, identity: 0.818

gcggcaggccgggcggtgcgcatcgt-cgagcgg	CRISPR spacer
gcggcacggcgggcggtgcgcatcgcgccggcg-	Protospacer
****** * ****************. * .***

6. spacer 2.28|1943455|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.829

gcgtcggtccatccggcgtcggcgagcacgagctt---	CRISPR spacer
gcggcggtccagccggcgtcggcgag---gagctccca	Protospacer
*** ******* **************   *****.

7. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cagccagatcgccgagcagcgcgccaagctggcg	Protospacer
* * ************** *********** * .

8. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cagccagatcgccgagcagcgcgccaagctggcg	Protospacer
* * ************** *********** * .

9. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cagccagatcgccgagcagcgcgccaagctggcc	Protospacer
* * ************** *********** *

10. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cagccagatcgccgagcagcgcgccaagctggcg	Protospacer
* * ************** *********** * .

11. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to MT889387 (Arthrobacter phage DanielleIgnace, complete genome) position: , mismatch: 6, identity: 0.824

ggtcatcaag---gcggtggtgcaccggcagatcgag	CRISPR spacer
---cttcaagcccgcggtggtgcagcggctgatcgag	Protospacer
   * *****   *********** **** *******

12. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035709 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt12, complete sequence) position: , mismatch: 6, identity: 0.824

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
cgtctgcaagacgctgctgctgcgcgccggccgc	Protospacer
 * *******.** *****************  *

13. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG651603 (Chromobacterium violaceum strain ATCC 12472 plasmid pChV1, complete sequence) position: , mismatch: 6, identity: 0.824

-ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
cgcgctgc-cggcgatgccgctgcgcgacggcatc	Protospacer
 * .****  ********.******** *******

14. spacer 2.1|1941502|35|NC_006513|CRISPRCasFinder,CRT matches to MT310853 (Microbacterium phage AvGardian, complete genome) position: , mismatch: 7, identity: 0.8

ggctgcgc-ctcgtcggcgagcagggtccggaactg	CRISPR spacer
-gctacacggtcgtcggcgagcagggcccggagctc	Protospacer
 ***.*.*  ****************.*****.**

15. spacer 2.17|1942664|33|NC_006513|CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.788

-gcggcaggccgggcggtgcgcatcgtcgagcgg	CRISPR spacer
ttcggtccg-cgggcggtgcgcggcgtcgagcgg	Protospacer
  ***.  * ************. **********

16. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 7, identity: 0.794

-gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
tacg-ccggcgagcttcgcgaacgcggcgatattg	Protospacer
 .** ************** .*********  **

17. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP029178 (Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

---ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
caaccaacag---gctgagcaccgcgccaagcacgaa	Protospacer
   **..***   **.**************** ****

18. spacer 2.40|1944326|36|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.806

catggcgaggcgcgccgcagcggggtcgat-gtcggg	CRISPR spacer
ggcggcgaggcgcgccgcatcgggctcgatcgtcag-	Protospacer
 ..**************** **** ***** ***.*

19. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052865 (Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagcacggtgaggctcgacccggtgctgctc	Protospacer
 *  * ****** * ***************** *

20. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047317 (Burkholderia glumae AU6208 plasmid pwszb, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagcacggtgaggctcgacccggtgctgctc	Protospacer
 *  * ****** * ***************** *

21. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to AF068845 (Mycobacteriophage TM4, complete genome) position: , mismatch: 7, identity: 0.794

-cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
gcagta-cacggtcacgcccgacacggtgctgccc	Protospacer
 *. .* ***********.**** ********* *

22. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NC_003387 (Mycobacterium phage TM4, complete genome) position: , mismatch: 7, identity: 0.794

-cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
gcagta-cacggtcacgcccgacacggtgctgccc	Protospacer
 *. .* ***********.**** ********* *

23. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009433 (Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagcacggtgaggctcgacccggtgctgctc	Protospacer
 *  * ****** * ***************** *

24. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagcacggtgaggctcgacccggtgctgctc	Protospacer
 *  * ****** * ***************** *

25. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045091 (Burkholderia glumae strain GX plasmid pWSGX3, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagcacggtgaggctcgacccggtgctgctc	Protospacer
 *  * ****** * ***************** *

26. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to KC787101 (Mycobacterium phage 33D, partial genome) position: , mismatch: 7, identity: 0.794

-cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
gcagta-cacggtcacgcccgacacggtgctgccc	Protospacer
 *. .* ***********.**** ********* *

27. spacer 2.46|1944758|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cggcgctgcgcgatgcgtgctgcgaactcgcgct-	CRISPR spacer
acgcgctgcgccatgcgtgctgccaa-tcttgctg	Protospacer
  ********* *********** ** ** .***

28. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 7, identity: 0.794

ggtcatcaaggcggtggtgcaccggcagatcgag	CRISPR spacer
gctgctgacggcggtggtgcagcggctgatcgag	Protospacer
* *  * * ************ **** *******

29. spacer 3.26|1950327|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.794

tcagca-cgccgatcggcatgtcctccgtcggata	CRISPR spacer
-cgacatcgccgatcggcacgtcctccttcgggaa	Protospacer
 *..** ************.******* ****. *

30. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.794

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
actcggcaaggcgaagctgctgcgcgacggcaac	Protospacer
.  * ********* *********** ***** *

31. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031370 (Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_3, complete sequence) position: , mismatch: 7, identity: 0.794

ggactgcaa--ggcgatgctgctgcgcgccggcatc	CRISPR spacer
--tctggaggcggcgttgctgctgagcgccggcatc	Protospacer
   *** *.  **** ******** ***********

32. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031371 (Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_4, complete sequence) position: , mismatch: 7, identity: 0.794

ggactgcaa--ggcgatgctgctgcgcgccggcatc	CRISPR spacer
--tctggaggcggcgttgctgctgagcgccggcatc	Protospacer
   *** *.  **** ******** ***********

33. spacer 4.4|1952858|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to MH622939 (Siphoviridae sp. isolate ctbf_3, complete genome) position: , mismatch: 7, identity: 0.8

aacgcgaccttgaacagcgcgaagcccttgcgatg	CRISPR spacer
ggcacgacctcgaacagcgcgaagccctggcgcgg	Protospacer
..*.******.***************** ***  *

34. spacer 2.17|1942664|33|NC_006513|CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.758

gcggcaggccgggcggtgcgcatcgtcgagcgg-	CRISPR spacer
gccgcaggcggggcggtgcgcatc-cagggcatc	Protospacer
** ****** ************** . *.**.

35. spacer 2.17|1942664|33|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 8, identity: 0.758

gcggcaggccgggcggtgcgcatcgtcgagcgg-	CRISPR spacer
gcggcaggcggtgcggtgcgcatc-cagggcatt	Protospacer
********* * ************ . *.**.

36. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.765

gcgc-ccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
-cgtgccggcgggcttcgcctacgcggcgggctgg	Protospacer
 **. ******.******** ********..**

37. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to NC_048098 (Arthrobacter phage Andrew, complete genome) position: , mismatch: 8, identity: 0.765

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gcaggatccggcgctcgaggacctgcaggtgctc	Protospacer
*..***** ********* ********. ** *

38. spacer 2.28|1943455|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

gcgtcggtccatccggcgtcggcgagcacgagctt	CRISPR spacer
tcgtcggtccgtccggcgtcggcaagagctggctc	Protospacer
 *********.************.** .* .***.

39. spacer 2.28|1943455|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 8, identity: 0.771

gcgtcggtccatccggcgtcggcgagcacgagctt	CRISPR spacer
tcgtcggtccgtccggcgtcggcaagagctggctc	Protospacer
 *********.************.** .* .***.

40. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 8, identity: 0.765

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
accgatgatcgccgagaaccgcgcccagctcgcg	Protospacer
 * *  ********** ******** ****** .

41. spacer 2.36|1944038|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 8, identity: 0.771

cccgagatcctcgccgcggacctgatcgtcagcca	CRISPR spacer
accgagatcctcgccgcggccctgaacgccggggc	Protospacer
 ****************** ***** **.*.*

42. spacer 2.36|1944038|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

cccgagatcctcgccgcggacctgatcgtcagcca	CRISPR spacer
ctccggatcgtcgccgcggacccgatcgtcgaccc	Protospacer
*.* .**** ************.*******..**

43. spacer 2.39|1944255|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023524 (Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cttcgccggtgcctaccagcgcgacgacacaggc--	CRISPR spacer
cttcgccgcggcctaccagcgcgatg--ctgggctg	Protospacer
********  **************.*   ..***

44. spacer 2.39|1944255|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

cttcgccggtgcctaccagcgcgacgacacaggc--	CRISPR spacer
cttcgccgcggcctaccagcgcgatg--ctgggctg	Protospacer
********  **************.*   ..***

45. spacer 2.41|1944399|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to MK977705 (Gordonia Phage Mollymur, complete genome) position: , mismatch: 8, identity: 0.765

gggtgagcgcgtcggcgatgaaaatcgactcggg	CRISPR spacer
aggtcagcgcgtcggcgaagaaaatgtccccgcg	Protospacer
.*** ************* ******   *.** *

46. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to MH834601 (Mycobacterium phage BoostSeason, complete genome) position: , mismatch: 8, identity: 0.765

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
aacctacacggtcacgcccgacacggtgctgccc	Protospacer
 ..*  ***********.**** ********* *

47. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NC_028759 (Mycobacterium phage Mufasa, complete genome) position: , mismatch: 8, identity: 0.765

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
aacctacacggtcacgcccgacacggtgctgccc	Protospacer
 ..*  ***********.**** ********* *

48. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052134 (Burkholderia glumae strain HN plasmid pbghn2, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagtacggtgaggctcgacccggtgctgctc	Protospacer
 *  * .***** * ***************** *

49. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
agagagtacggtgaggctcgacccggtgctgctc	Protospacer
 *  * .***** * ***************** *

50. spacer 2.50|1945045|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.771

acgatcgtcggccacgacaaccacggcaactacac	CRISPR spacer
ccgatcgtcggcgacgccaaccacggcaagggacc	Protospacer
 *********** *** ************  .  *

51. spacer 3.20|1949897|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_047861 (Bordetella phage vB_BbrM_PHB04, complete genome) position: , mismatch: 8, identity: 0.765

aaaggccggcacctcaaccaccgcgccccaggca	CRISPR spacer
cacgccgcgcacctcaaccagcgcgctccaggcg	Protospacer
 * * *  ************ *****.******.

52. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
actcggcaaggcgaagctgctgcgcgacggcgcc	Protospacer
.  * ********* *********** ****..*

53. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
gctgggcaaggcgaagctgctgcgcgacggcgcc	Protospacer
*    ********* *********** ****..*

54. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050991 (Chromobacterium violaceum strain FDAARGOS_635 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
cgccttgccggcgatgccgctgcgcgacggcatc	Protospacer
 * **    ********.******** *******

55. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
actcggtaaggcgaagctgctgcgcgacggcaac	Protospacer
.  * *.******* *********** ***** *

56. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 8, identity: 0.765

--ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
gtggacgct--ggcgatgctgcttggcgccggcatg	Protospacer
  ****  .  ************  **********

57. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
cggctccgccgcgctgctgctgcgctccggcatc	Protospacer
 *.** *.  *** *********** ********

58. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134446 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 4, complete sequence) position: , mismatch: 8, identity: 0.765

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
ggcgaacacgccgatgctgctgcgcgccggactc	Protospacer
**   .** * *******************  **

59. spacer 4.4|1952858|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594664 (Variovorax sp. RA8 plasmid 3) position: , mismatch: 8, identity: 0.771

aacgcgacc---ttgaacagcgcgaagcccttgcgatg	CRISPR spacer
---tcgcccttgttgagcagcgcgacgcccttgcgatc	Protospacer
    ** **   ****.******** ***********

60. spacer 2.1|1941502|35|NC_006513|CRISPRCasFinder,CRT matches to MH632120 (Mycobacterium phage Thonko, complete genome) position: , mismatch: 9, identity: 0.743

ggctgcgcctcgtcggcgagcagggtccggaactg	CRISPR spacer
cgctgcgcctcgtcggcgaccggggtcgcgacgac	Protospacer
 ****************** *.*****  **

61. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP029453 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence) position: , mismatch: 9, identity: 0.735

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
cctgggacgccttccagcagatcaaggaacggac	Protospacer
 ****.****** ***************  .  .

62. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP023069 (Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence) position: , mismatch: 9, identity: 0.735

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
cctgggacgccttccagcagatcaaggaacggac	Protospacer
 ****.****** ***************  .  .

63. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP029233 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence) position: , mismatch: 9, identity: 0.735

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
cctgggacgccttccagcagatcaaggaacggac	Protospacer
 ****.****** ***************  .  .

64. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to MT024862 (Microbacterium phage Alakazam, complete genome) position: , mismatch: 9, identity: 0.735

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
cgaccaacgccttccagcacatcaaggacaagcg	Protospacer
     ******* ****** *********** *

65. spacer 2.12|1942300|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 9, identity: 0.735

gctggaacgcctaccagcagatcaaggacaacct	CRISPR spacer
tcaagaacgcctgcgagcagatcaaggagcggct	Protospacer
 * .********.* *************  . **

66. spacer 2.17|1942664|33|NC_006513|CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.727

gcggcaggccgggcggtgcgcatcgtcgagcgg	CRISPR spacer
tggggcggccgggcggtgcgctccgtcgaggtc	Protospacer
  **  *************** .*******

67. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 9, identity: 0.735

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
ggtgacggcgagcttcgccggcgccgcgaagcac	Protospacer
*    ***************.*** ***** . *

68. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC105987 (Pseudomonas phage KPP22 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

69. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC102730 (Pseudomonas phage S12-1 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

70. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC472883 (Pseudomonas phage S12-3 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

71. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to MN131142 (Pseudomonas virus PA8P1, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

72. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC105988 (Pseudomonas phage KPP22M1 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

73. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to MN131143 (Pseudomonas virus PA11P1, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

74. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC105990 (Pseudomonas phage KPP22M3 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

75. spacer 2.27|1943384|34|NC_006513|CRISPRCasFinder,CRT matches to LC105989 (Pseudomonas phage KPP22M2 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gtgggatcgggcgctcgacgacctgcaactgatg	CRISPR spacer
gaaacaccgggcgctcgacgacgtgcgactgctc	Protospacer
* .. *.*************** ***.**** *

76. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgagcagatagccgatcaccgcgccaagcagact	Protospacer
* .****** ***** *************  .

77. spacer 2.32|1943742|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 9, identity: 0.735

acggcgacccgctgcggccggacctcgattacct	CRISPR spacer
agcatgtcgtgctgcggccggacctcgagtatct	Protospacer
*  ..* * .****************** **.**

78. spacer 2.32|1943742|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.735

acggcgacccgctgcggccggacctcgattacct	CRISPR spacer
acggcaacccgctgcgcccggaccccctgcgcat	Protospacer
*****.********** *******.*   ..* *

79. spacer 2.32|1943742|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.735

acggcgacccgctgcggccggacctcgattacct	CRISPR spacer
acggcaacccgctgcgcccggaccccctgcgcat	Protospacer
*****.********** *******.*   ..* *

80. spacer 2.32|1943742|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.735

acggcgacccgctgcggccggacctcgattacct	CRISPR spacer
acggcaacccgctgcgcccggaccccctgcgcat	Protospacer
*****.********** *******.*   ..* *

81. spacer 2.32|1943742|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 9, identity: 0.735

acggcgacccgctgcggccggacctcgattacct	CRISPR spacer
acggcaacccgctgcgcccggaccccctgcgcat	Protospacer
*****.********** *******.*   ..* *

82. spacer 2.36|1944038|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011667 (Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence) position: , mismatch: 9, identity: 0.743

cccgagatcctcgccgcggacctgatcgtcagcca	CRISPR spacer
ttctacgacttcgccgccgacctgatcgtcaacca	Protospacer
..* * . *.******* *************.***

83. spacer 2.36|1944038|35|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 9, identity: 0.743

cccgagatcctcgccgcggacctgatcgtcagcca	CRISPR spacer
ttctacgacttcgccgccgacctgatcgtcaacca	Protospacer
..* * . *.******* *************.***

84. spacer 2.39|1944255|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.735

cttcgccggtgcctaccagcgcgacgacacaggc	CRISPR spacer
ccgcgccggtgcctaacaccgcgacgacgtcccc	Protospacer
*. ************ ** *********..   *

85. spacer 2.41|1944399|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044329 (Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gggtgagcgcgtcggcgatgaaaatcgactcggg	CRISPR spacer
accggagcgcgtcgccgatgaatatcgacgccga	Protospacer
.   ********** ******* ****** * *.

86. spacer 2.41|1944399|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034087 (Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence) position: , mismatch: 9, identity: 0.735

gggtgagcgcgtcggcgatgaaaatcgactcggg	CRISPR spacer
accggagcgcgtcgccgatgaatatcgacgccga	Protospacer
.   ********** ******* ****** * *.

87. spacer 2.44|1944614|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to KJ510412 (Mycobacterium phage ZoeJ, complete genome) position: , mismatch: 9, identity: 0.735

cgtcaccacggtcacgctcgacccggtgctgcgc	CRISPR spacer
ggaatacccggtcacgcccgacacggtgctgccc	Protospacer
 *    * *********.**** ********* *

88. spacer 2.46|1944758|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to MT613935 (Pseudomonas phage Persinger, complete genome) position: , mismatch: 9, identity: 0.735

----cggcgctgcgcgatgcgtgctgcgaactcgcgct	CRISPR spacer
ttcgtggt----cgccaggcgtgctgcgaactcgcgcg	Protospacer
    .**.    *** * *******************

89. spacer 2.54|1945334|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.735

gctggcgacgggtcggtgggaagggggatcacat	CRISPR spacer
gaggggtcggggtcggtgggaaggtgggtcacag	Protospacer
*  **    *************** **.*****

90. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024652 (Escherichia coli strain BH100 substr. MG2014 plasmid pBH100-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtcatcaaggcggtggtgcaccggcagatcgag	CRISPR spacer
ggatgtgctggcggcgatgcaccggcagatcgat	Protospacer
** ..*   *****.*.****************

91. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025139 (Escherichia coli strain BH100L substr. MG2017 plasmid pBH100alpha, complete sequence) position: , mismatch: 9, identity: 0.735

ggtcatcaaggcggtggtgcaccggcagatcgag	CRISPR spacer
ggatgtgctggcggcgatgcaccggcagatcgat	Protospacer
** ..*   *****.*.****************

92. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025253 (Escherichia coli strain BH100 substr. MG2017 plasmid pBH100-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtcatcaaggcggtggtgcaccggcagatcgag	CRISPR spacer
ggatgtgctggcggcgatgcaccggcagatcgat	Protospacer
** ..*   *****.*.****************

93. spacer 2.60|1945764|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025254 (Escherichia coli strain BH100L substr. MG2014 plasmid pBH100alpha, complete sequence) position: , mismatch: 9, identity: 0.735

ggtcatcaaggcggtggtgcaccggcagatcgag	CRISPR spacer
ggatgtgctggcggcgatgcaccggcagatcgat	Protospacer
** ..*   *****.*.****************

94. spacer 2.64|1946053|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

cccggacgtactggctcagcggcgcacggtcgac	CRISPR spacer
gggcggcgtgctggctcagtggcgcacggtcgtg	Protospacer
    *.***.*********.************

95. spacer 3.9|1949113|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 9, identity: 0.735

gatcgagtgcgtgttccgctaccgcacgcggact	CRISPR spacer
gatgtgcggcgtgatcccctaccgcacgcggatg	Protospacer
***  .  ***** *** **************.

96. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to CU468217 (Azospirillum brasilense bacteriophage Cd, complete genome) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

97. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_010355 (Azospirillum phage Cd, complete genome) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

98. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

99. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

100. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

101. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

102. spacer 3.15|1949543|33|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.727

gtcgatttctgccacctcaacgggctcaccggt	CRISPR spacer
tgggtcttctgccacctcaacggcctcaacgaa	Protospacer
   * .***************** **** **.

103. spacer 3.17|1949684|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtcgacgagttcggtgtcagccatctcctggct	CRISPR spacer
ggtcgacgacttcggtgccagccatagcgatgac	Protospacer
********* *******.*******  *   * .

104. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
gcagtcgcccgcgatgctgatgcgcgccgggatc	Protospacer
* * *     ********* ********** ***

105. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 9, identity: 0.735

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
catcggcctcgcggtgctgctgcgcgccggcgtc	Protospacer
 . * **   ***.*****************.**

106. spacer 4.7|1953073|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to MG869620 (Polaromonas sp. H6N plasmid pH6NP1, complete sequence) position: , mismatch: 9, identity: 0.735

gcaatccgatcgtcgatcgggccacgggagaggt	CRISPR spacer
gtttcgcgatcgtcgatcgcgccaccggagagca	Protospacer
*.  . ************* ***** ******

107. spacer 4.8|1953144|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 9, identity: 0.743

ctcggcgcggccggcggctactacaagcacctgat	CRISPR spacer
gtcaaggaggccggcggcgactacaaggacctggc	Protospacer
 **.. * ********** ******** *****..

108. spacer 4.8|1953144|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 9, identity: 0.743

ctcggcgcggccggcggctactacaagcacctgat	CRISPR spacer
gtcaaggaggccggcggcgactacaaggacctggc	Protospacer
 **.. * ********** ******** *****..

109. spacer 2.1|1941502|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 10, identity: 0.714

ggctgcgcctcgtcggcgagcagggtccggaactg	CRISPR spacer
gcgaccggctcgtcggcgagcaggatccggggtcg	Protospacer
*    ** ****************.*****....*

110. spacer 2.2|1941574|35|NC_006513|CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.714

accaagatcaagacgatcggcaagctgctggacga	CRISPR spacer
gacaagatgaagacgatccgcaagctgaacggcat	Protospacer
. ****** ********* ********   *.*.

111. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP053565 (Pseudonocardia sp. Gen01 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
cgccccggcgagccacgccgacgcggcggtggcc	Protospacer
   **********. *************.   .*

112. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP018232 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
aaggccggcgagcatcgccgaggcggcgtccgca	Protospacer
. * ********* ******* ******  * .

113. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 10, identity: 0.706

gcgcccggcgagcttcgccgacg------cggcgaacttc	CRISPR spacer
cagcgcggcgagcttcgccgatgcggacccggcg------	Protospacer
  ** ****************.*      *****

114. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to NC_048068 (Microbacterium phage OneinaGillian, complete genome) position: , mismatch: 10, identity: 0.706

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
gggggcggcgagcttggtcgacgcggcgacgcgg	Protospacer
* *  ********** *.***********  .

115. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to MH669000 (Gordonia phage Ali17, complete genome) position: , mismatch: 10, identity: 0.706

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgccgagttcgccgagcaccgcgccgagctgccg	Protospacer
*    ** *****************.****   .

116. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to MN586026 (Gordonia phage Leonard, complete genome) position: , mismatch: 10, identity: 0.706

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgccgagttcgccgagcaccgcgccgagctgccg	Protospacer
*    ** *****************.****   .

117. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NC_031112 (Gordonia phage Phinally, complete genome) position: , mismatch: 10, identity: 0.706

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgccgagttcgccgagcaccgcgccgagctgccg	Protospacer
*    ** *****************.****   .

118. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to MN369745 (Microbacterium phage Kaijohn, complete genome) position: , mismatch: 10, identity: 0.706

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgacctgaacgccgagcaccgcgccgagctgttc	Protospacer
* . * ** ****************.****

119. spacer 2.30|1943599|34|NC_006513|CRISPRCasFinder,CRT matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 10, identity: 0.706

ccggcagatcgccgagcaccgcgccaagctcgaa	CRISPR spacer
cgaagggatcgccaagcacggcgccaagctggtc	Protospacer
* .. .*******.***** ********** *

120. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaagcagtacagccccttcatggccgaagacgcc	Protospacer
*.. * .   **** ******.*************

121. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaagcaatacagccccttcatggccgaagacgcc	Protospacer
*.. * .   **** ******.*************

122. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.714

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaagcagtacagccccttcatggccgaagacgcc	Protospacer
*.. * .   **** ******.*************

123. spacer 2.70|1946488|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to CP006583 (Mesorhizobium huakuii 7653R plasmid pMHb, complete sequence) position: , mismatch: 10, identity: 0.706

tcgataagtacgacaaggcgacgaagcagcgcaa	CRISPR spacer
cgcaatatcccgacaaggcggcgaagcaccgcaa	Protospacer
.  *  * . **********.******* *****

124. spacer 3.20|1949897|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034347 (Roseovarius sp. MME-070 plasmid pMME07001, complete sequence) position: , mismatch: 10, identity: 0.706

aaaggccggcacctcaaccaccgcgccccaggca	CRISPR spacer
gcaggccggcacctcgaccagcgcgccgtcctct	Protospacer
. *************.**** ****** .   *

125. spacer 3.27|1950398|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 10, identity: 0.706

ggactgcaaggcgatgctgctgcgcgccggcatc	CRISPR spacer
ccagcgcatggcgctgctgctgcgcgccgtggcc	Protospacer
  * .*** **** ***************  ..*

126. spacer 4.4|1952858|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017564 (Paraburkholderia sprentiae WSM5005 plasmid pl3WSM5005, complete sequence) position: , mismatch: 10, identity: 0.714

aacgcgaccttgaacagcgcgaagcccttgcgatg	CRISPR spacer
cgcgcgatcttgaacagcgcgaaggccgcatcgtg	Protospacer
 .*****.**************** ** ... .**

127. spacer 4.4|1952858|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

aacgcgaccttgaacagcgcgaagcccttgcgatg	CRISPR spacer
accgcgacctcgaacagcgtgaagcccggatccgg	Protospacer
* ********.********.*******  ..   *

128. spacer 4.7|1953073|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 10, identity: 0.706

gcaatccgatcgtcgatcgggccacgggagaggt	CRISPR spacer
cctcggcgaacgtcgctcgggccacgggagcgtg	Protospacer
 *    *** ***** ************** *

129. spacer 4.13|1953504|35|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 10, identity: 0.714

gcggcgttgttgccgatcgtcttcgttacgttctg	CRISPR spacer
gcggcgttgtggccgaccgtcttcgaagagaccgt	Protospacer
********** *****.********  . * .*

130. spacer 2.1|1941502|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

ggctgcgcctcgtcggcgagcagggtccggaactg	CRISPR spacer
tgctgcacctcgtcggcgatcagggtgttcttgcg	Protospacer
 *****.************ ****** .     .*

131. spacer 2.20|1942880|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

ggctgcctcgccgcggtgaagcaggcgatcaggga	CRISPR spacer
tgctgcctcggcgcggtgaaccaggccgccgacag	Protospacer
 ********* ********* ***** ..*.. ..

132. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to MT553342 (Microbacterium phage Kelcole, complete genome) position: , mismatch: 11, identity: 0.676

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
aggggcggcgagcttggtcgacgcggcgacgcgg	Protospacer
. *  ********** *.***********  .

133. spacer 2.23|1943096|34|NC_006513|CRISPRCasFinder,CRT matches to MT310894 (Microbacterium phage Tempo, complete genome) position: , mismatch: 11, identity: 0.676

gcgcccggcgagcttcgccgacgcggcgaacttc	CRISPR spacer
aggggcggcgagcttggtcgacgcggcgacgcgg	Protospacer
. *  ********** *.***********  .

134. spacer 2.24|1943167|36|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 11, identity: 0.694

cacggtcaccaatgccggcgttgccgggtaaccact	CRISPR spacer
ttcggtcatcaatgccggcgttgcctggatcatgtt	Protospacer
. ******.**************** **    ...*

135. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaaacagtacagccccttcatggccgaagacgcc	Protospacer
*.. . .   **** ******.*************

136. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.686

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaaacagtacagccccttcatggccgaagacgcc	Protospacer
*.. . .   **** ******.*************

137. spacer 2.34|1943885|35|NC_006513|CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 11, identity: 0.686

atgcgagcgccagcgccttcacggccgaagacgcc	CRISPR spacer
acaaacagtacagccccttcatggccgaagacgcc	Protospacer
*.. . .   **** ******.*************

138. spacer 2.39|1944255|34|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NC_015970 (Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence) position: , mismatch: 11, identity: 0.676

cttcgccggtgcctaccagcgcgacgacacaggc	CRISPR spacer
aagcgccggtgcgtgccagcgcgacgagcagcgt	Protospacer
   ********* *.************   . *.

139. spacer 2.69|1946412|39|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038640 (Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence) position: , mismatch: 11, identity: 0.718

cgcatca-aaacggcgctgctgtcgcggctgtcggaaatc	CRISPR spacer
-gcgctgcggtcggcgctgctgtctcggctgtcggcaatg	Protospacer
 **.... .. ************* ********** ***

140. spacer 2.69|1946412|39|NC_006513|CRISPRCasFinder,CRT,PILER-CR matches to NC_019320 (Variovorax sp. DB1 plasmid pDB1, complete sequence) position: , mismatch: 11, identity: 0.718

cgcatca-aaacggcgctgctgtcgcggctgtcggaaatc	CRISPR spacer
-gcgctgcggtcggcgctgctgtctcggctgtcggcaatg	Protospacer
 **.... .. ************* ********** ***

141. spacer 3.26|1950327|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723671 (Rhizobium flavum strain YW14 plasmid 2) position: , mismatch: 11, identity: 0.676

tcagcacgccgatcggcatgtcctccgtcggata	CRISPR spacer
agcgcacgctgaacggcatgtcctccgccaaccg	Protospacer
   ******.** **************.*.. ..

142. spacer 4.6|1953002|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043850 (Micrococcus luteus strain NCCP 15687 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

caaccactggcaccgacggagggccgcacaagat	CRISPR spacer
agctcacgggcaccgacgtagggccgcaggtact	Protospacer
 . .*** ********** ********* . . *

143. spacer 3.19|1949826|34|NC_006513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 12, identity: 0.647

cagcgatgccgcacttcagcatgctgtcgagcac	CRISPR spacer
ggaacatgccgcaattcggcatgctgtcggttct	Protospacer
 ..  ******** ***.***********. . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10855 : 52787

Acidithiobacillus_phage(33.33%)

transposase,integrase,tRNA

attL 7079:7095|attR 14521:14537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7079:7095	attL	NA	NA	NA	NA
WP_157866667.1\|10855_11803_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.5e-67	45.7
WP_083782910.1\|11810_12035_+	hypothetical protein	NA	NA	NA	NA
WP_157866540.1\|11946_13056_-\|integrase	tyrosine-type recombinase/integrase	A0A1W6JP34	Morganella_phage	1.7e-46	39.6
WP_011235878.1\|13334_14132_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_011235879.1\|14128_15085_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
14521:14537	attR	NA	NA	NA	NA
WP_011235880.1\|15141_16422_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_011235881.1\|16475_19262_-	PEP-CTERM system TPR-repeat protein PrsT	NA	NA	NA	NA
WP_011235882.1\|19264_20623_-	PEP-CTERM-box response regulator transcription factor	NA	NA	NA	NA
WP_049780329.1\|20615_22709_-	PEP-CTERM system histidine kinase PrsK	NA	NA	NA	NA
WP_011235884.1\|22815_24201_-	TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase	NA	NA	NA	NA
WP_011235886.1\|24508_25453_-	alpha/beta hydrolase	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	8.9e-33	29.1
WP_157866541.1\|25557_25905_-	hypothetical protein	NA	NA	NA	NA
WP_049780125.1\|25977_26238_-	hypothetical protein	NA	NA	NA	NA
WP_011235890.1\|26434_28864_-	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_011235891.1\|29267_30170_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_011235893.1\|30393_30672_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_011235896.1\|30798_31263_+	bacterioferritin	NA	NA	NA	NA
WP_011235897.1\|31294_32155_-	kinase	NA	NA	NA	NA
WP_011235898.1\|32574_32814_-	hypothetical protein	NA	NA	NA	NA
WP_011235899.1\|32848_33475_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011235900.1\|33774_34302_-	peptide deformylase	A0A2I7S809	Vibrio_phage	3.7e-12	38.3
WP_011235901.1\|34344_34803_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_011235902.1\|35277_36324_-	Fic family protein	NA	NA	NA	NA
WP_011235903.1\|36320_37226_-	restriction endonuclease	NA	NA	NA	NA
WP_011235905.1\|38060_38795_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-121	91.0
WP_011235906.1\|38817_40377_-\|transposase	IS21-like element ISAzo4 family transposase	K4I413	Acidithiobacillus_phage	1.5e-266	88.8
WP_168955096.1\|40975_42289_-\|transposase	IS4-like element ISAzo5 family transposase	NA	NA	NA	NA
WP_011235911.1\|42787_43912_-\|transposase	ISAs1-like element ISAzo3 family transposase	NA	NA	NA	NA
WP_157866542.1\|44014_44242_-	NERD domain-containing protein	NA	NA	NA	NA
WP_157866543.1\|44589_45027_-	hypothetical protein	NA	NA	NA	NA
WP_011235911.1\|45168_46293_-\|transposase	ISAs1-like element ISAzo3 family transposase	NA	NA	NA	NA
WP_041645351.1\|46373_46907_-	hypothetical protein	NA	NA	NA	NA
WP_041645353.1\|47353_48616_-	hypothetical protein	NA	NA	NA	NA
WP_041645357.1\|48990_49335_+	hypothetical protein	NA	NA	NA	NA
WP_011235915.1\|49379_49661_+	hypothetical protein	NA	NA	NA	NA
WP_041645359.1\|49657_49885_-	type I toxin-antitoxin system ptaRNA1 family toxin	NA	NA	NA	NA
WP_157866669.1\|49992_51567_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_011235911.1\|51662_52787_+\|transposase	ISAs1-like element ISAzo3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

121929 : 159803

Acidithiobacillus_phage(14.29%)

transposase,integrase

attL 119941:119993|attR 132505:132557

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
119941:119993	attL	NA	NA	NA	NA
WP_011235974.1\|121929_123498_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.4e-263	87.4
WP_162014364.1\|123710_124073_-	hypothetical protein	NA	NA	NA	NA
WP_011235975.1\|124069_124738_-	hypothetical protein	NA	NA	NA	NA
WP_011235976.1\|125040_126561_+\|transposase	IS21-like element ISAzo12 family transposase	NA	NA	NA	NA
WP_011235977.1\|126573_127362_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.7e-34	34.9
WP_011235978.1\|127731_129243_-	AAA family ATPase	A0A1B0VML8	Pseudomonas_phage	3.8e-33	39.5
WP_049780127.1\|129252_129687_-	hypothetical protein	NA	NA	NA	NA
WP_041645397.1\|129683_129881_-	hypothetical protein	NA	NA	NA	NA
WP_011235980.1\|130023_130803_-	hypothetical protein	NA	NA	NA	NA
WP_011235981.1\|130903_132322_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_011235982.1\|132652_133537_-	universal stress protein	NA	NA	NA	NA
132505:132557	attR	NA	NA	NA	NA
WP_011235983.1\|133790_136526_+	cation-transporting P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	9.1e-78	32.1
WP_041645400.1\|137215_137578_-	HNH nuclease family protein	NA	NA	NA	NA
WP_011235986.1\|137794_138691_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_011235987.1\|138748_139531_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.2e-22	35.0
WP_083782914.1\|140185_140626_+	type II toxin-antitoxin system YoeB family toxin	NA	NA	NA	NA
WP_011235989.1\|141580_143380_+	EAL domain-containing protein	NA	NA	NA	NA
WP_083782916.1\|143712_144099_+	hypothetical protein	NA	NA	NA	NA
WP_157866549.1\|144020_144662_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.3e-06	21.8
WP_011235993.1\|145067_145940_+	transcriptional regulator	NA	NA	NA	NA
WP_011235994.1\|145948_148891_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-42	25.2
WP_011235995.1\|148949_153485_+	class I SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_168955096.1\|153435_154749_-\|transposase	IS4-like element ISAzo5 family transposase	NA	NA	NA	NA
WP_041645406.1\|155125_155578_+	hypothetical protein	NA	NA	NA	NA
WP_011235997.1\|155574_156930_+	hypothetical protein	NA	NA	NA	NA
WP_041645408.1\|157034_158192_+	hypothetical protein	NA	NA	NA	NA
WP_011235999.1\|158306_159803_+\|transposase	IS21-like element ISAZo16 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

173737 : 234526

Leptospira_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011236702.1\|173737_174775_-\|transposase	IS5-like element ISAzo11 family transposase	NA	NA	NA	NA
WP_157866551.1\|174724_177562_+	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_011236006.1\|177558_179634_+	AAA family ATPase	NA	NA	NA	NA
WP_083782917.1\|179700_179934_+	hypothetical protein	NA	NA	NA	NA
WP_157866552.1\|180038_180461_+	hypothetical protein	NA	NA	NA	NA
WP_011236007.1\|180457_180805_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.9e-09	43.7
WP_157866553.1\|180883_182182_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.4e-35	29.0
WP_011236009.1\|182371_183931_+\|transposase	IS21-like element ISAzo4 family transposase	K4I413	Acidithiobacillus_phage	1.3e-267	89.0
WP_011236010.1\|183953_184688_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4
WP_041645420.1\|184954_185206_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_083782918.1\|185272_185509_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011236013.1\|186762_187110_-	c-type cytochrome	NA	NA	NA	NA
WP_011236014.1\|187109_188756_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011236015.1\|188755_189418_-	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_011236016.1\|189545_190553_-	NAD(P)-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	3.8e-05	25.8
WP_011236017.1\|190663_190981_-	hypothetical protein	NA	NA	NA	NA
WP_011236018.1\|191024_192209_-	lipid-transfer protein	NA	NA	NA	NA
WP_041646715.1\|192246_192990_-	glucose 1-dehydrogenase	NA	NA	NA	NA
WP_011236020.1\|193038_193842_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	4.5e-09	29.2
WP_011236021.1\|193864_195400_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011236022.1\|195474_196356_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_011236023.1\|196348_197836_-	biotin carboxyl carrier protein	NA	NA	NA	NA
WP_011236024.1\|197837_199220_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_011236025.1\|199216_199708_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_011236026.1\|199704_200946_-	Tm-1-like ATP-binding domain-containing protein	NA	NA	NA	NA
WP_011236027.1\|200982_202977_-	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_011236029.1\|203276_205097_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011236030.1\|205249_205702_-	universal stress protein	NA	NA	NA	NA
WP_011236031.1\|205721_208121_-	RND family transporter	NA	NA	NA	NA
WP_041645437.1\|208120_209245_-	hypothetical protein	NA	NA	NA	NA
WP_011236033.1\|209393_210758_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_011236034.1\|210794_212480_-	DUF1302 domain-containing protein	NA	NA	NA	NA
WP_011236038.1\|213779_214169_+	HIT family protein	D7NW73	Streptomyces_phage	9.1e-16	41.9
WP_083783012.1\|214531_215221_+	HNH endonuclease	A0A2I2MUI7	uncultured_Caudovirales_phage	3.8e-33	38.9
WP_041645439.1\|215320_215953_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	1.9e-34	40.3
WP_011236041.1\|216002_216386_-	H-NS histone family protein	NA	NA	NA	NA
WP_041645442.1\|217036_217282_-	hypothetical protein	NA	NA	NA	NA
WP_157866555.1\|217583_218318_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_068881147.1\|218464_219364_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011236046.1\|219517_220066_-	super-infection exclusion protein B	NA	NA	NA	NA
WP_173361279.1\|220305_221619_+\|transposase	IS4-like element ISAzo5 family transposase	NA	NA	NA	NA
WP_041645443.1\|222227_223595_-	alkaline phosphatase D family protein	A0A0R8V0A4	Thermobifida_phage	4.3e-12	26.0
WP_011236050.1\|223847_224936_+\|transposase	IS21-like element ISAzo17 family transposase	A0A2L1IVA1	Escherichia_phage	6.4e-75	44.3
WP_011236051.1\|224932_225712_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-77	57.1
WP_011236053.1\|226358_226772_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_157866556.1\|226840_227095_-	hypothetical protein	NA	NA	NA	NA
WP_049780131.1\|227288_228434_-	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_041645447.1\|228445_228844_-	hypothetical protein	NA	NA	NA	NA
WP_011236056.1\|229033_229588_-	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_011236058.1\|231207_232110_-	ParA family protein	Q7M293	Enterobacteria_phage	1.2e-07	26.5
WP_041645449.1\|232187_232514_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011236696.1\|232513_232852_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011236060.1\|232948_234526_+\|transposase	IS66-like element ISAzo15 family transposase	A0A218MNE7	uncultured_virus	3.5e-90	43.2

DBSCAN-SWA_4

265128 : 299892

uncultured_virus(16.67%)

transposase,integrase,protease

attL 281013:281047|attR 287923:287957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011236060.1\|265128_266706_-\|transposase	IS66-like element ISAzo15 family transposase	A0A218MNE7	uncultured_virus	3.5e-90	43.2
WP_011236696.1\|266802_267141_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041645449.1\|267140_267467_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041645467.1\|267486_268119_-	hypothetical protein	NA	NA	NA	NA
WP_083782923.1\|268306_268495_-	hypothetical protein	NA	NA	NA	NA
WP_041645469.1\|268984_269389_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_049780141.1\|269521_269830_+	hypothetical protein	NA	NA	NA	NA
WP_085938645.1\|269854_270989_+\|transposase	IS3-like element ISAzo18 family transposase	Q8W6R2	Burkholderia_virus	6.8e-19	32.8
WP_011236098.1\|272716_273151_-\|transposase	IS200/IS605-like element ISAzo20 family transposase	NA	NA	NA	NA
WP_011236100.1\|273956_275660_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_011236101.1\|275855_276500_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011236102.1\|276633_278040_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_011236103.1\|278148_278610_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_041645476.1\|278675_279116_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011236105.1\|279507_280746_+	hypothetical protein	NA	NA	NA	NA
281013:281047	attL	NA	NA	NA	NA
WP_011236106.1\|281474_282473_-\|integrase	site-specific integrase	B8R670	Lactobacillus_phage	1.5e-06	27.3
WP_011236107.1\|282469_283414_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236108.1\|283410_284649_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236109.1\|284697_285582_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011236110.1\|285574_286552_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011236111.1\|286548_287802_-\|integrase	tyrosine-type recombinase/integrase	D6PIF1	uncultured_phage	3.2e-06	27.2
WP_041645482.1\|288307_289630_+	GTPase HflX	NA	NA	NA	NA
287923:287957	attR	NA	NA	NA	NA
WP_041646751.1\|289960_290470_-	N-acetyltransferase	NA	NA	NA	NA
WP_011236114.1\|290678_291911_-	glycosyltransferase family 1 protein	A0A1L3KK54	Shahe_endorna-like_virus	6.9e-09	42.6
WP_049780142.1\|291968_292622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041646754.1\|293016_293709_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011236117.1\|293974_295894_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_011236118.1\|296232_297759_-	hypothetical protein	A0A1B0T6K9	Thiobacimonas_phage	3.6e-15	23.7
WP_011236119.1\|297736_298780_-	hypothetical protein	NA	NA	NA	NA
WP_076611219.1\|299079_299892_+\|transposase	IS5-like element ISAzo24 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

328392 : 371589

Streptococcus_phage(28.57%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041645493.1\|328392_329715_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	5.7e-94	42.7
WP_011236150.1\|330086_330521_+\|transposase	IS200/IS605-like element ISAzo20 family transposase	NA	NA	NA	NA
WP_011236151.1\|330620_331655_-\|transposase	IS630-like element ISAzo32 family transposase	S5VXX4	Leptospira_phage	2.3e-58	36.1
WP_041646779.1\|332037_332850_+\|transposase	IS5-like element ISAzo23 family transposase	NA	NA	NA	NA
WP_011236154.1\|333011_334082_+	hypothetical protein	NA	NA	NA	NA
WP_041645500.1\|334321_335497_+\|transposase	IS1182-like element ISAzo25 family transposase	NA	NA	NA	NA
WP_011236156.1\|335698_337399_-\|transposase	IS1634-like element ISAzo14 family transposase	NA	NA	NA	NA
WP_011236157.1\|337630_339754_-	S8 family serine peptidase	A0A2K9L570	Tupanvirus	1.4e-17	33.2
WP_011236158.1\|340214_341102_-	cache domain-containing protein	NA	NA	NA	NA
WP_011236159.1\|341220_342909_-	alpha-glucosidase	NA	NA	NA	NA
WP_011236160.1\|343064_344060_+	glucokinase	NA	NA	NA	NA
WP_011236161.1\|344092_344950_-	metallophosphoesterase	NA	NA	NA	NA
WP_011236162.1\|344949_345933_-	diacylglycerol kinase-like protein	NA	NA	NA	NA
WP_011236163.1\|346117_346621_-	inorganic diphosphatase	NA	NA	NA	NA
WP_011236164.1\|346789_347896_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_011236165.1\|347963_349178_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011236167.1\|349927_352000_+	LTA synthase family protein	NA	NA	NA	NA
WP_011236168.1\|352181_352925_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_041645506.1\|352926_353199_+	lipid-A-disaccharide synthase N-terminal domain-containing protein	NA	NA	NA	NA
WP_049780335.1\|353244_354726_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_041645508.1\|354809_355013_-	hypothetical protein	NA	NA	NA	NA
WP_011236171.1\|355289_356738_+	tryptophanase	NA	NA	NA	NA
WP_011236172.1\|356837_357200_-	diacylglycerol kinase	NA	NA	NA	NA
WP_011236173.1\|357196_357880_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_011236174.1\|357963_360048_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.2e-52	27.5
WP_041645511.1\|360044_360428_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_049780146.1\|360408_360753_-	hypothetical protein	NA	NA	NA	NA
WP_041645513.1\|360749_361112_-	hypothetical protein	NA	NA	NA	NA
WP_011236176.1\|361113_361815_-	ferritin	NA	NA	NA	NA
WP_011236177.1\|361807_362143_-	cation transporter	NA	NA	NA	NA
WP_041646789.1\|362169_362655_-	hypothetical protein	NA	NA	NA	NA
WP_011236179.1\|362842_363769_-	c-type cytochrome	NA	NA	NA	NA
WP_011236180.1\|363779_364406_-	c-type cytochrome	NA	NA	NA	NA
WP_011236181.1\|364803_365364_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_011236182.1\|365559_366642_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	9.2e-66	38.7
WP_049780147.1\|366794_367079_-	hypothetical protein	NA	NA	NA	NA
WP_011236184.1\|367278_368637_-\|transposase	IS1182-like element ISAzo1 family transposase	NA	NA	NA	NA
WP_049780149.1\|368667_369051_-	hypothetical protein	NA	NA	NA	NA
WP_011236010.1\|369272_370007_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4
WP_011236187.1\|370029_371589_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-266	88.4

DBSCAN-SWA_6

447347 : 454564

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011236260.1\|447347_448283_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.6e-32	33.8
WP_011236261.1\|448293_449184_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2R3ZZL7	Microbacterium_phage	2.0e-05	34.3
WP_011236262.1\|449180_449837_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	NA	NA	NA
WP_011236263.1\|449833_450577_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.5e-71	53.3
WP_011236264.1\|450748_451903_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.6e-15	39.8
WP_011236265.1\|452247_453807_+\|transposase	IS21-like element ISAzo4 family transposase	K4I413	Acidithiobacillus_phage	1.0e-267	89.0
WP_011236010.1\|453829_454564_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4

DBSCAN-SWA_7

1126680 : 1177559

Acidithiobacillus_phage(22.22%)

transposase,integrase

attL 1142924:1142956|attR 1144127:1144159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011236905.1\|1126680_1128240_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.7e-267	88.8
WP_011236010.1\|1128262_1128997_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4
WP_083782938.1\|1129348_1129819_+\|transposase	transposase	NA	NA	NA	NA
WP_011236908.1\|1129977_1130430_-	universal stress protein	NA	NA	NA	NA
WP_011236909.1\|1130449_1132849_-	RND family transporter	NA	NA	NA	NA
WP_157866694.1\|1132848_1133904_-	hypothetical protein	NA	NA	NA	NA
WP_011236911.1\|1134137_1135502_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_011236912.1\|1135531_1137217_-	DUF1302 domain-containing protein	NA	NA	NA	NA
WP_041645857.1\|1140478_1141357_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	7.5e-34	34.2
WP_011236918.1\|1141366_1142566_+\|transposase	IS91-like element ISAzo26 family transposase	NA	NA	NA	NA
1142924:1142956	attL	NA	NA	NA	NA
WP_011236920.1\|1143008_1144052_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	6.6e-13	26.6
WP_011236923.1\|1145637_1145976_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
1144127:1144159	attR	NA	NA	NA	NA
WP_011236924.1\|1145975_1146302_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011236925.1\|1146417_1147572_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_011236926.1\|1147680_1148463_-	2-ketocyclohexanecarboxyl-CoA hydrolase	NA	NA	NA	NA
WP_011236927.1\|1148507_1149275_-	2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	NA	NA	NA	NA
WP_041645859.1\|1149378_1149849_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011236929.1\|1149985_1151134_-	cyclohexanecarboxyl-CoA dehydrogenase	NA	NA	NA	NA
WP_011236930.1\|1151535_1153185_+	cyclohexanecarboxylate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.7e-34	26.9
WP_011236931.1\|1153184_1153958_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_011236932.1\|1153993_1155034_+	porin	NA	NA	NA	NA
WP_011236933.1\|1155067_1158130_-	EAL domain-containing protein	G3MA91	Bacillus_virus	8.7e-21	34.9
WP_011236934.1\|1158449_1159064_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_173361282.1\|1159231_1160437_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011236936.1\|1160447_1163609_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011236937.1\|1163608_1165036_+	AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor	NA	NA	NA	NA
WP_011236938.1\|1165237_1165606_+	hypothetical protein	NA	NA	NA	NA
WP_011236939.1\|1165614_1166094_+	hypothetical protein	NA	NA	NA	NA
WP_011236940.1\|1166155_1166692_-	DNA starvation/stationary phase protection protein	W5S6G8	Pithovirus	6.2e-15	35.7
WP_011236941.1\|1166832_1169601_-	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	5.0e-07	25.0
WP_011236942.1\|1169606_1171451_-	Hsp70 family protein	NA	NA	NA	NA
WP_011236943.1\|1171447_1172002_-	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_011236944.1\|1172389_1173118_+	glutathione S-transferase	NA	NA	NA	NA
WP_011236945.1\|1173182_1174811_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_011236946.1\|1175058_1175955_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011236947.1\|1176179_1177559_-\|transposase	IS110-like element ISAzo22 family transposase	Q9JMN8	Wolbachia_phage	7.8e-94	44.4

DBSCAN-SWA_8

1492491 : 1550877

Acidithiobacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011237243.1\|1492491_1493583_-\|transposase	IS5-like element ISAzo31 family transposase	NA	NA	NA	NA
WP_011236010.1\|1495263_1495998_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4
WP_011237019.1\|1496020_1497583_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.4e-261	87.9
WP_011237246.1\|1498859_1499486_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_026295731.1\|1499589_1499886_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011237248.1\|1499912_1501784_-	TraI domain-containing protein	NA	NA	NA	NA
WP_011237249.1\|1502186_1503554_-	hypothetical protein	NA	NA	NA	NA
WP_011237250.1\|1503569_1504439_-	hypothetical protein	NA	NA	NA	NA
WP_011237251.1\|1504480_1505704_-\|transposase	ISAzo13-like element ISAzo13 family transposase	NA	NA	NA	NA
WP_041645955.1\|1505728_1506817_-	hypothetical protein	NA	NA	NA	NA
WP_041645957.1\|1506968_1507286_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_049780213.1\|1507285_1507702_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA
WP_011237254.1\|1507869_1508244_+	DUF3742 family protein	NA	NA	NA	NA
WP_011237257.1\|1509778_1510132_-	hypothetical protein	NA	NA	NA	NA
WP_011237258.1\|1510128_1511535_-	integrating conjugative element protein	NA	NA	NA	NA
WP_011237259.1\|1511545_1512490_-	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_011237260.1\|1512486_1512936_-	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_011237261.1\|1513088_1513583_-	DNA repair protein RadC	NA	NA	NA	NA
WP_011237263.1\|1514184_1515570_+	hypothetical protein	NA	NA	NA	NA
WP_011237264.1\|1515571_1516321_-	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_011237267.1\|1517575_1518265_+\|transposase	transposase	NA	NA	NA	NA
WP_041645963.1\|1518359_1518638_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011237269.1\|1518648_1518948_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	5.2e-11	42.5
WP_011237270.1\|1519133_1519826_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_157866591.1\|1519911_1520583_+	transglutaminase family protein	NA	NA	NA	NA
WP_011237272.1\|1520723_1522691_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.5e-58	29.9
WP_011237273.1\|1522734_1523958_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.5e-130	58.9
WP_041645968.1\|1524114_1524744_+	hypothetical protein	NA	NA	NA	NA
WP_011237276.1\|1524823_1525429_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_041645970.1\|1525462_1526377_-	DMT family transporter	NA	NA	NA	NA
WP_011237278.1\|1526384_1527440_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_049780216.1\|1527439_1528450_-	glutathione synthase	NA	NA	NA	NA
WP_011237280.1\|1528450_1529746_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_011237281.1\|1529840_1531070_-	class I SAM-dependent methyltransferase	A0A2H4UTH8	Bodo_saltans_virus	3.1e-25	24.2
WP_011237282.1\|1531255_1532044_+	EcsC family protein	NA	NA	NA	NA
WP_011237283.1\|1532114_1532513_+	DUF488 family protein	NA	NA	NA	NA
WP_049780218.1\|1533120_1533612_+	chaperone NapD	NA	NA	NA	NA
WP_011237286.1\|1533661_1534714_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_011237287.1\|1534984_1535965_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_041645972.1\|1535968_1536688_-	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_011237290.1\|1537068_1537599_+	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_011237291.1\|1537612_1538194_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_011237292.1\|1538205_1538736_+	RnfABCDGE type electron transport complex subunit B	NA	NA	NA	NA
WP_011237293.1\|1538745_1540272_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_157866703.1\|1540277_1541357_+	RnfABCDGE type electron transport complex subunit D	NA	NA	NA	NA
WP_011237295.1\|1541353_1541989_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_011237296.1\|1541985_1542663_+	electron transport complex subunit E	NA	NA	NA	NA
WP_041645975.1\|1542683_1542983_+	RnfH family protein	NA	NA	NA	NA
WP_011237298.1\|1543154_1543670_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.0e-38	50.9
WP_157866704.1\|1543756_1544977_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_011237300.1\|1545081_1545561_-	ferric reductase-like transmembrane domain-containing protein	NA	NA	NA	NA
WP_011237301.1\|1545684_1546116_-	PAS sensor domain-containing protein	NA	NA	NA	NA
WP_157866592.1\|1546211_1546373_+	hypothetical protein	NA	NA	NA	NA
WP_011237302.1\|1546426_1547062_+	LysE family translocator	NA	NA	NA	NA
WP_011237303.1\|1547091_1548906_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.7e-48	29.0
WP_011237305.1\|1549176_1550877_-\|transposase	IS1634-like element ISAzo6 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1758347 : 1768474

Synechococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011237502.1\|1758347_1758851_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.1e-16	40.2
WP_041646042.1\|1759013_1760045_+	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	1.2e-11	27.9
WP_011237504.1\|1760047_1761220_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.7e-23	34.9
WP_041647065.1\|1761238_1761703_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_011237506.1\|1761811_1764385_+	DNA topoisomerase III	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	2.9e-17	24.8
WP_011237507.1\|1764475_1765615_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011237508.1\|1765735_1766683_-	hydrogen peroxide-inducible genes activator	A0A2P0ZL89	Lactobacillus_phage	9.9e-16	26.7
WP_011237510.1\|1766974_1768474_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	5.1e-22	28.4

DBSCAN-SWA_10

1913005 : 1935465

Stx2-converting_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011236702.1\|1913005_1914043_+\|transposase	IS5-like element ISAzo11 family transposase	NA	NA	NA	NA
WP_011237642.1\|1914578_1915055_+	hypothetical protein	NA	NA	NA	NA
WP_041647091.1\|1915397_1916438_+	c-type cytochrome	NA	NA	NA	NA
WP_041646083.1\|1916718_1917015_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_011237645.1\|1917286_1917559_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_011237646.1\|1917582_1918104_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_041646085.1\|1918191_1919448_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_157866600.1\|1919701_1920019_+	hypothetical protein	NA	NA	NA	NA
WP_011238929.1\|1920036_1921653_-\|transposase	IS66-like element ISAzo21 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-37	28.5
WP_011237649.1\|1921681_1922041_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-11	35.4
WP_041646090.1\|1922040_1922346_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_157866601.1\|1922360_1922747_+	hypothetical protein	NA	NA	NA	NA
WP_011236947.1\|1923115_1924495_+\|transposase	IS110-like element ISAzo22 family transposase	Q9JMN8	Wolbachia_phage	7.8e-94	44.4
WP_011237651.1\|1924719_1925661_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.2e-32	30.5
WP_011236702.1\|1926372_1927410_-\|transposase	IS5-like element ISAzo11 family transposase	NA	NA	NA	NA
WP_173361279.1\|1927643_1928957_-\|transposase	IS4-like element ISAzo5 family transposase	NA	NA	NA	NA
WP_157866602.1\|1929048_1929738_-	hypothetical protein	NA	NA	NA	NA
WP_157866603.1\|1930164_1931034_-	hypothetical protein	NA	NA	NA	NA
WP_011237658.1\|1931398_1932616_-	DUF1343 domain-containing protein	NA	NA	NA	NA
WP_049780238.1\|1932612_1933212_-	DOMON-like domain-containing protein	NA	NA	NA	NA
WP_083783023.1\|1933220_1934531_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011236702.1\|1934427_1935465_+\|transposase	IS5-like element ISAzo11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2101551 : 2110655

Staphylococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083783024.1\|2101551_2103345_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A285PWH2	Cedratvirus	2.8e-11	28.1
WP_011237828.1\|2103341_2104121_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.1e-11	26.0
WP_049780246.1\|2104258_2105398_+	alkene reductase	NA	NA	NA	NA
WP_011237830.1\|2105535_2105814_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	1.9e-12	44.4
WP_011237832.1\|2106257_2107649_+	DEAD/DEAH box helicase	A0A1B1IS59	uncultured_Mediterranean_phage	1.5e-49	32.5
WP_011237833.1\|2107889_2108327_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_011237834.1\|2108323_2108794_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	2.3e-13	37.7
WP_011237835.1\|2108877_2109987_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-52	37.1
WP_011237836.1\|2110049_2110655_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-23	37.1

DBSCAN-SWA_12

3216046 : 3311067

Pseudomonas_phage(16.0%)

transposase,head,tail,portal,terminase,protease,capsid,integrase,tRNA

attL 3263715:3263733|attR 3294894:3294912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011238872.1\|3216046_3216511_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	1.6e-06	36.0
WP_041647439.1\|3216516_3216996_+	L,D-transpeptidase	NA	NA	NA	NA
WP_011238874.1\|3217047_3217836_-	NRDE family protein	NA	NA	NA	NA
WP_011238875.1\|3217826_3218135_-	DUF4936 family protein	NA	NA	NA	NA
WP_011238876.1\|3218138_3219194_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_011238877.1\|3219306_3220308_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011238878.1\|3220304_3220937_+	dTMP kinase	A0A1L2BX49	Bacteriophage	5.4e-18	33.2
WP_011238879.1\|3220933_3221995_+	DNA polymerase III subunit delta'	A0A1U9WR94	Streptococcus_virus	2.5e-07	36.0
WP_011238880.1\|3221991_3222354_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_011238881.1\|3222386_3223160_+	TatD family hydrolase	NA	NA	NA	NA
WP_011238882.1\|3223164_3223839_+	ankyrin repeat domain-containing protein	A0A1V0SEL4	Hokovirus	6.6e-06	25.2
WP_011238883.1\|3223998_3225342_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_011238884.1\|3225522_3226695_+	amidohydrolase	NA	NA	NA	NA
WP_011238885.1\|3226723_3229219_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_011238886.1\|3229381_3230587_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_011238887.1\|3230620_3231700_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_041646482.1\|3231986_3232271_+	hypothetical protein	NA	NA	NA	NA
WP_011238890.1\|3232374_3234795_+	AAA family ATPase	NA	NA	NA	NA
WP_157866626.1\|3234873_3235203_+	hypothetical protein	NA	NA	NA	NA
WP_011238892.1\|3235271_3240086_-	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_011238893.1\|3240566_3241772_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_173361294.1\|3241971_3244002_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_011238895.1\|3243998_3244481_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011238896.1\|3244593_3247617_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_041646486.1\|3247998_3248958_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_011238899.1\|3248950_3249607_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_011238900.1\|3249651_3250371_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011238901.1\|3250367_3250997_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_011238902.1\|3251006_3251510_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_011238903.1\|3251537_3251717_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_011238904.1\|3251803_3252817_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_011238905.1\|3252813_3253779_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_011238906.1\|3253794_3254724_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_011238907.1\|3254720_3255479_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-14	32.0
WP_011238908.1\|3255570_3255810_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.9e-12	46.1
WP_011238909.1\|3255831_3257070_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_011238910.1\|3257091_3257562_+	hypothetical protein	NA	NA	NA	NA
WP_011238911.1\|3257564_3259148_-	L-aspartate oxidase	NA	NA	NA	NA
WP_011238912.1\|3259370_3259970_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_041646493.1\|3259983_3260547_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA
WP_011238914.1\|3260543_3261521_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA
WP_049780293.1\|3261517_3261991_+	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_011238916.1\|3261987_3263400_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.5e-17	26.4
WP_041647446.1\|3263420_3263660_+	glutaredoxin family protein	NA	NA	NA	NA
3263715:3263733	attL	NA	NA	NA	NA
WP_049780294.1\|3263847_3267294_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	2.0e-45	34.2
WP_011238919.1\|3267566_3267890_-\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_011238920.1\|3267886_3268249_-	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	7.6e-17	42.6
WP_011238921.1\|3268245_3268692_-	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	2.0e-19	38.5
WP_011238922.1\|3268694_3269027_-\|head	phage head closure protein	Q9MCV2	Escherichia_phage	5.5e-22	48.6
WP_011238923.1\|3269017_3269296_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011238924.1\|3269292_3270507_-\|portal	phage portal protein	S4TTG7	Salmonella_phage	3.9e-97	47.2
WP_011238925.1\|3270571_3272410_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	1.2e-94	38.6
WP_011238926.1\|3272420_3273926_-\|terminase	terminase	K7P7T5	Enterobacteria_phage	1.1e-144	53.1
WP_049780295.1\|3273928_3274180_-	hypothetical protein	NA	NA	NA	NA
WP_011238929.1\|3274599_3276216_-\|transposase	IS66-like element ISAzo21 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-37	28.5
WP_011237649.1\|3276244_3276604_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-11	35.4
WP_041646090.1\|3276603_3276909_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011236010.1\|3278433_3279168_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-121	91.4
WP_011238932.1\|3279352_3279580_-	hypothetical protein	NA	NA	NA	NA
WP_157866627.1\|3279637_3279982_-	hypothetical protein	F8UBV0	Escherichia_phage	2.0e-06	34.1
WP_041646495.1\|3280095_3280323_+	hypothetical protein	NA	NA	NA	NA
WP_168955096.1\|3282005_3283319_-\|transposase	IS4-like element ISAzo5 family transposase	NA	NA	NA	NA
WP_011237347.1\|3285017_3285806_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	8.8e-34	34.9
WP_157866628.1\|3287208_3288963_-	hypothetical protein	NA	NA	NA	NA
WP_011236060.1\|3289117_3290695_-\|transposase	IS66-like element ISAzo15 family transposase	A0A218MNE7	uncultured_virus	3.5e-90	43.2
WP_011236696.1\|3290791_3291130_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041645449.1\|3291129_3291456_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011238940.1\|3291475_3292075_-	hypothetical protein	NA	NA	NA	NA
WP_041646498.1\|3292454_3292811_-	hypothetical protein	NA	NA	NA	NA
WP_041646499.1\|3292807_3293026_-	hypothetical protein	NA	NA	NA	NA
WP_041646500.1\|3293022_3293262_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011238944.1\|3293482_3294691_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.7e-84	41.4
WP_011238945.1\|3294892_3296689_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.2e-23	24.0
3294894:3294912	attR	NA	NA	NA	NA
WP_011238946.1\|3296737_3297526_+	signal peptidase I	NA	NA	NA	NA
WP_011238947.1\|3297544_3297904_+	DUF4845 domain-containing protein	NA	NA	NA	NA
WP_011238948.1\|3297903_3298581_+	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	6.6e-14	37.2
WP_011238949.1\|3298577_3299495_+	GTPase Era	NA	NA	NA	NA
WP_011238950.1\|3299516_3300236_+	DNA repair protein RecO	NA	NA	NA	NA
WP_011238951.1\|3300232_3300988_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_011238952.1\|3300998_3301376_+	holo-ACP synthase	NA	NA	NA	NA
WP_011238953.1\|3301372_3302443_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_011238954.1\|3302466_3304275_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_011238955.1\|3304307_3304901_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_049780223.1\|3305798_3307154_+	ATPase	NA	NA	NA	NA
WP_011237381.1\|3307146_3307842_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_011238958.1\|3307926_3308148_+	hypothetical protein	NA	NA	NA	NA
WP_049780296.1\|3308403_3309063_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011236051.1\|3309202_3309982_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-77	57.1
WP_011236249.1\|3309978_3311067_-\|transposase	IS21-like element ISAzo17 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-74	44.0

DBSCAN-SWA_13

4227107 : 4290559

Pseudomonas_phage(15.79%)

head,tail,portal,terminase,capsid,protease,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011239834.1\|4227107_4227899_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_011239835.1\|4227984_4228371_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_011239836.1\|4228552_4229632_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_011239837.1\|4229628_4230708_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_011239838.1\|4230817_4232320_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.7e-55	37.4
WP_011239839.1\|4232337_4232775_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_011239840.1\|4232771_4233281_+	hypothetical protein	NA	NA	NA	NA
WP_011239841.1\|4233364_4234669_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_011239842.1\|4234655_4236380_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.3e-26	30.5
WP_011239843.1\|4236530_4237784_-	carboxypeptidase regulatory-like domain-containing protein	U5Q1E2	Bacillus_phage	4.4e-11	36.9
WP_011239844.1\|4238107_4240954_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.7e-140	38.0
WP_041646643.1\|4241052_4241283_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_011239846.1\|4241449_4242889_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_041647712.1\|4242968_4243484_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_011239848.1\|4243770_4244673_-	DNA-3-methyladenine glycosylase 2	S4VVW3	Pandoravirus	5.2e-06	26.9
WP_011239849.1\|4244669_4245206_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_157866757.1\|4245646_4246660_+	glycosyl transferase	NA	NA	NA	NA
WP_041646644.1\|4246656_4247334_+	transferase	NA	NA	NA	NA
WP_011239852.1\|4247378_4247912_-	sulfotransferase	NA	NA	NA	NA
WP_011238249.1\|4248365_4249265_-	reverse transcriptase	A0A0U4J920	Pseudomonas_phage	2.9e-17	35.1
WP_083783008.1\|4250817_4251120_-	sulfotransferase	NA	NA	NA	NA
WP_011239855.1\|4251637_4252582_+	flocculation-associated PEP-CTERM protein PepA	NA	NA	NA	NA
WP_041646646.1\|4252664_4254191_+	hypothetical protein	NA	NA	NA	NA
WP_011239857.1\|4254252_4255326_-	nitroreductase family protein	NA	NA	NA	NA
WP_041646647.1\|4255318_4256206_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_011239859.1\|4256467_4256698_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011239860.1\|4256698_4257109_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011239861.1\|4257304_4259197_-	propionate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	5.0e-59	31.3
WP_011239863.1\|4259521_4260520_-	oxidoreductase	NA	NA	NA	NA
WP_011239865.1\|4260795_4262718_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.6e-44	27.7
WP_041646648.1\|4262829_4264953_+	site-specific recombinase	NA	NA	NA	NA
WP_011239867.1\|4265207_4265426_+	hypothetical protein	NA	NA	NA	NA
WP_049780327.1\|4265449_4265935_-	hypothetical protein	NA	NA	NA	NA
WP_041646650.1\|4265938_4266190_-	hypothetical protein	NA	NA	NA	NA
WP_011239869.1\|4266189_4266723_-	glycoside hydrolase family protein	NA	NA	NA	NA
WP_041646651.1\|4266715_4266928_-	hypothetical protein	NA	NA	NA	NA
WP_041646652.1\|4266948_4267167_-	hypothetical protein	NA	NA	NA	NA
WP_011239871.1\|4267153_4269232_-	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	3.3e-56	38.4
WP_041646653.1\|4269241_4269646_-	hypothetical protein	NA	NA	NA	NA
WP_041646654.1\|4269649_4269970_-	hypothetical protein	NA	NA	NA	NA
WP_011239873.1\|4269966_4271097_-	hypothetical protein	NA	NA	NA	NA
WP_011239874.1\|4271112_4274361_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	4.4e-156	34.6
WP_011239875.1\|4274367_4274751_-	hypothetical protein	A0A076G8B9	Pseudoalteromonas_phage	3.5e-12	43.6
WP_011239876.1\|4274751_4278162_-	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	5.0e-41	44.4
WP_041646655.1\|4278237_4279167_-	hypothetical protein	NA	NA	NA	NA
WP_041646656.1\|4279315_4279774_-	hypothetical protein	NA	NA	NA	NA
WP_041646657.1\|4279770_4280388_-\|tail	phage tail protein	NA	NA	NA	NA
WP_041646658.1\|4280384_4280681_-	hypothetical protein	NA	NA	NA	NA
WP_011239879.1\|4280680_4281679_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-95	53.8
WP_011239880.1\|4281709_4282054_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.2e-08	41.4
WP_041646659.1\|4282069_4283167_-\|protease	Clp protease ClpP	A0A2K9VH82	Gordonia_phage	1.5e-23	41.6
WP_011239882.1\|4283256_4283520_-	hypothetical protein	NA	NA	NA	NA
WP_041646661.1\|4283579_4283903_-	hypothetical protein	NA	NA	NA	NA
WP_157866663.1\|4283902_4284049_-	hypothetical protein	NA	NA	NA	NA
WP_041646662.1\|4284060_4284594_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	2.3e-46	56.5
WP_011239885.1\|4284593_4284914_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_011239886.1\|4284906_4286382_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	1.3e-115	48.1
WP_011239887.1\|4286381_4286606_-	hypothetical protein	NA	NA	NA	NA
WP_041646663.1\|4286779_4287247_+	hypothetical protein	NA	NA	NA	NA
WP_011239890.1\|4287248_4287986_-	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	1.1e-46	43.6
WP_049780328.1\|4288107_4288497_-	hypothetical protein	NA	NA	NA	NA
WP_011239891.1\|4288513_4290559_-\|terminase	phage terminase large subunit family protein	B7SYD3	Stenotrophomonas_phage	7.0e-216	59.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_006823

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006824

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_006513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection