CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014011	Aminobacterium colombiense DSM 12261, complete sequence	2 crisprs	cas2,cas1,cas5,cas7,cas8b3,cas3,cas6,DinG,WYL,DEDDh	0	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014011_1

112500-114959

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CRT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	PILER-CR

34 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3,cas6

The CRISPR arrays of NC_014011_1

>merge|NC_014011|1|112500-114959|CRISPRCasFinder,CRT,PILER-CR
TTTTGCAACGCCTTACGACATCAGAGGTTACATCACCGTCGAGAATGTGCAGCACAAAACAACTTGTGCCGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACAAGGAACCCTTTTTACCCATGCCGACATGAGCCAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTTTGATAAGGTTTTGATGTATGCAGGAACACATCCGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATCCTGCCAACCAGAGGATGAAATGTATTCTATTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTTTGTGCGAGAGATATCCTTTCCTGCATTCCAGAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTTATTTGTTCGCGTGGCGTTAGGACTTCCTCGTATAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACGAGCGGTTCCAGTATTGCTCTTCTCTTGCTGAGCGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATCAAAACAGCCTCCCTATCAAAACACCCCTGCAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATACTCTCCTTGCCGCTCTTAAGGCTGCTGGACTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTGTTTGGGAAGAGTTGCGGTTGATAGTGGTCAGCTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCTGTTAGTGATTCCAACCAATTCCCCCACCACTGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACAAAATTATTAGCGTAGAAAATAACATAATGAGCTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTCTATAGGTGGCGACATTACTCCATTTGTTCCACGTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATGGAATGCAGGCAGGCGAAGCCGCGGGAAAAAGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCAGATAAAGAGAGACTGCCCTTTTTGTAAACTCCAAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACAACGCGTGGACAACCTCACGGTAAATCAGGCAAAAGAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCTGCCGATAAAACTCGTGATTTTGGTGTATTGCAGTAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACGTAATTAACATCTACGTCTTTTACTTTTCCACCTGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACGAAGAAAACAGGCATGAGGCATATTTGCTTTATTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATCTCACTCATATTTATGAATAAAACCATTGACTTTTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTCCATCAAGGCTGACATCGCAACCCTTAAAAAGTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACAAATATGTTTCTATATTCCCTTCCTTGGGGTCCCTGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATTTACAAAAGTTCGCTTCTATCTTCAACTGCACGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCTCATTTGAGAGAAAAGATCCACTACACCCTGTGTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACAAGTAAACCGGTATTTTTTTCATAAAATCACCCTCGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTTCAGATTCTCAAGCGCACGGACTTCGTTGATAGAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACACGCCCACAAGCACATATTTCAGGAATTGCGCTTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACGTGGTAGGCAATTTCCCAGAACACCAGAGTATTTTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCGAAGCTGTCTACAAAGGGCTCATCGCTGCCTAGGTGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACTTTCAGGTGTTTCTTCAAGTCCAATTTGCCCTTCAAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACCTGGGGGAGCGAGTAGATACAGGGGGGGCCATCTAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATTGTCAGAGGCTGTGGAGCAAACTTTGCAAAAGGCAGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATAGCTGAGGATTTCAGATCTCAAGTCCCCGTACGGTGCTCAACGCCTTACGGCATCAGAGGTTATATCACATAGTTCCCCAGTAAGCCCTTTCGCCTGCTGGCTGATGTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC

>NC_014011|1|1|112500-114959|CRISPRCasFinder
TTTTGCAACGCCTTACGACATCAGAGGTTACATCAC	CGTCGAGAATGTGCAGCACAAAACAACTTGTGCCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGGAACCCTTTTTACCCATGCCGACATGAGCCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGATAAGGTTTTGATGTATGCAGGAACACATCCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCCTGCCAACCAGAGGATGAAATGTATTCTATTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGTGCGAGAGATATCCTTTCCTGCATTCCAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTATTTGTTCGCGTGGCGTTAGGACTTCCTCGTATA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAGCGGTTCCAGTATTGCTCTTCTCTTGCTGAGCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCAAAACAGCCTCCCTATCAAAACACCCCTGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATACTCTCCTTGCCGCTCTTAAGGCTGCTGGACT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TGTTTGGGAAGAGTTGCGGTTGATAGTGGTCAGCT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGTTAGTGATTCCAACCAATTCCCCCACCACTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAAATTATTAGCGTAGAAAATAACATAATGAGCTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCTATAGGTGGCGACATTACTCCATTTGTTCCACGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATGGAATGCAGGCAGGCGAAGCCGCGGGAAAAAG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CAGATAAAGAGAGACTGCCCTTTTTGTAAACTCCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AACGCGTGGACAACCTCACGGTAAATCAGGCAAAAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGCCGATAAAACTCGTGATTTTGGTGTATTGCAGTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTAATTAACATCTACGTCTTTTACTTTTCCACCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAAGAAAACAGGCATGAGGCATATTTGCTTTATT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCTCACTCATATTTATGAATAAAACCATTGACTTTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCCATCAAGGCTGACATCGCAACCCTTAAAAAGTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAATATGTTTCTATATTCCCTTCCTTGGGGTCCCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTTACAAAAGTTCGCTTCTATCTTCAACTGCAC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTCATTTGAGAGAAAAGATCCACTACACCCTGTGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGTAAACCGGTATTTTTTTCATAAAATCACCCTC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTCAGATTCTCAAGCGCACGGACTTCGTTGATAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ACGCCCACAAGCACATATTTCAGGAATTGCGCTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTGGTAGGCAATTTCCCAGAACACCAGAGTATTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CGAAGCTGTCTACAAAGGGCTCATCGCTGCCTAGGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTCAGGTGTTTCTTCAAGTCCAATTTGCCCTTCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGGGGGAGCGAGTAGATACAGGGGGGGCCATCTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTGTCAGAGGCTGTGGAGCAAACTTTGCAAAAGGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGCTGAGGATTTCAGATCTCAAGTCCCCGTACG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGTTCCCCAGTAAGCCCTTTCGCCTGCTGGCTGAT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC

>NC_014011|1|1|112500-114959|CRT
TTTTGCAACGCCTTACGACATCAGAGGTTACATCAC	CGTCGAGAATGTGCAGCACAAAACAACTTGTGCCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGGAACCCTTTTTACCCATGCCGACATGAGCCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGATAAGGTTTTGATGTATGCAGGAACACATCCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCCTGCCAACCAGAGGATGAAATGTATTCTATTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGTGCGAGAGATATCCTTTCCTGCATTCCAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTATTTGTTCGCGTGGCGTTAGGACTTCCTCGTATA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAGCGGTTCCAGTATTGCTCTTCTCTTGCTGAGCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCAAAACAGCCTCCCTATCAAAACACCCCTGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATACTCTCCTTGCCGCTCTTAAGGCTGCTGGACT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TGTTTGGGAAGAGTTGCGGTTGATAGTGGTCAGCT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGTTAGTGATTCCAACCAATTCCCCCACCACTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAAATTATTAGCGTAGAAAATAACATAATGAGCTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCTATAGGTGGCGACATTACTCCATTTGTTCCACGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATGGAATGCAGGCAGGCGAAGCCGCGGGAAAAAG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CAGATAAAGAGAGACTGCCCTTTTTGTAAACTCCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AACGCGTGGACAACCTCACGGTAAATCAGGCAAAAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGCCGATAAAACTCGTGATTTTGGTGTATTGCAGTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTAATTAACATCTACGTCTTTTACTTTTCCACCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAAGAAAACAGGCATGAGGCATATTTGCTTTATT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCTCACTCATATTTATGAATAAAACCATTGACTTTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCCATCAAGGCTGACATCGCAACCCTTAAAAAGTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAATATGTTTCTATATTCCCTTCCTTGGGGTCCCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTTACAAAAGTTCGCTTCTATCTTCAACTGCAC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTCATTTGAGAGAAAAGATCCACTACACCCTGTGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGTAAACCGGTATTTTTTTCATAAAATCACCCTC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTCAGATTCTCAAGCGCACGGACTTCGTTGATAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ACGCCCACAAGCACATATTTCAGGAATTGCGCTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTGGTAGGCAATTTCCCAGAACACCAGAGTATTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CGAAGCTGTCTACAAAGGGCTCATCGCTGCCTAGGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTCAGGTGTTTCTTCAAGTCCAATTTGCCCTTCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGGGGGAGCGAGTAGATACAGGGGGGGCCATCTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTGTCAGAGGCTGTGGAGCAAACTTTGCAAAAGGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGCTGAGGATTTCAGATCTCAAGTCCCCGTACG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGTTCCCCAGTAAGCCCTTTCGCCTGCTGGCTGAT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC

>NC_014011|1|1|112571-114959|PILER-CR
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGGAACCCTTTTTACCCATGCCGACATGAGCCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGATAAGGTTTTGATGTATGCAGGAACACATCCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCCTGCCAACCAGAGGATGAAATGTATTCTATTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTGTGCGAGAGATATCCTTTCCTGCATTCCAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTATTTGTTCGCGTGGCGTTAGGACTTCCTCGTATA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAGCGGTTCCAGTATTGCTCTTCTCTTGCTGAGCG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCAAAACAGCCTCCCTATCAAAACACCCCTGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATACTCTCCTTGCCGCTCTTAAGGCTGCTGGACT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TGTTTGGGAAGAGTTGCGGTTGATAGTGGTCAGCT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGTTAGTGATTCCAACCAATTCCCCCACCACTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAAATTATTAGCGTAGAAAATAACATAATGAGCTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCTATAGGTGGCGACATTACTCCATTTGTTCCACGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATGGAATGCAGGCAGGCGAAGCCGCGGGAAAAAG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CAGATAAAGAGAGACTGCCCTTTTTGTAAACTCCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AACGCGTGGACAACCTCACGGTAAATCAGGCAAAAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGCCGATAAAACTCGTGATTTTGGTGTATTGCAGTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTAATTAACATCTACGTCTTTTACTTTTCCACCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GAAGAAAACAGGCATGAGGCATATTTGCTTTATT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATCTCACTCATATTTATGAATAAAACCATTGACTTTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TCCATCAAGGCTGACATCGCAACCCTTAAAAAGTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAATATGTTTCTATATTCCCTTCCTTGGGGTCCCTG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTTACAAAAGTTCGCTTCTATCTTCAACTGCAC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTCATTTGAGAGAAAAGATCCACTACACCCTGTGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	AAGTAAACCGGTATTTTTTTCATAAAATCACCCTC
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTCAGATTCTCAAGCGCACGGACTTCGTTGATAGA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ACGCCCACAAGCACATATTTCAGGAATTGCGCTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	GTGGTAGGCAATTTCCCAGAACACCAGAGTATTTT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CGAAGCTGTCTACAAAGGGCTCATCGCTGCCTAGGT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	TTTCAGGTGTTTCTTCAAGTCCAATTTGCCCTTCAA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	CTGGGGGAGCGAGTAGATACAGGGGGGGCCATCTA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATTGTCAGAGGCTGTGGAGCAAACTTTGCAAAAGGCA
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGCTGAGGATTTCAGATCTCAAGTCCCCGTACG
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC	ATAGTTCCCCAGTAAGCCCTTTCGCCTGCTGGCTGAT
GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014011.1\|WP_013047532.1\|107070_108405_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NC_014011.1\|WP_169302785.1\|125026_125725_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_014011.1\|WP_013047534.1\|109868_112445_+\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
NC_014011.1\|WP_013047541.1\|120625_122908_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NC_014011.1\|WP_052292776.1\|124124_124313_-\|hypothetical-protein	unknown	unknown	unknown
NC_014011.1\|WP_013047529.1\|103013_105827_-\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|377101
NC_014011.1\|WP_013047533.1\|108482_109664_-\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|275146
NC_014011.1\|WP_013047536.1\|115214_115499_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|378256
NC_014011.1\|WP_013047531.1\|106549_106930_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_014011.1\|WP_013047542.1\|122912_123560_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_014011.1\|WP_013047538.1\|117161_117842_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|187824
NC_014011.1\|WP_052292777.1\|124315_124630_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132844
NC_014011.1\|WP_013047530.1\|105923_106418_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|376698
NC_014011.1\|WP_013047527.1\|100130_101168_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_014011.1\|WP_041459286.1\|101537_102917_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_014011.1\|WP_013047539.1\|117847_118768_-\|hypothetical-protein	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_014011.1\|WP_013047526.1\|99763_100147_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NC_014011.1\|WP_013047540.1\|118793_120596_-\|type-I-MYXAN-CRISPR-associated-protein-Cmx8	cas8b3	mkCas0177_cas8b3_CAS-I-B	gnl\|CDD\|275206
NC_014011.1\|WP_148211372.1\|99238_99724_-\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NC_014011.1\|WP_148211301.1\|115515_117183_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899

Protein	Function_ID	Function_description	E-value
NC_014011.1\|WP_013047532.1\|107070_108405_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	1.2903e-90
NC_014011.1\|WP_169302785.1\|125026_125725_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.37472e-53
NC_014011.1\|WP_013047534.1\|109868_112445_+\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.71916e-179
NC_014011.1\|WP_013047541.1\|120625_122908_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.09625e-52
NC_014011.1\|WP_013047529.1\|103013_105827_-\|UPF0182-family-protein	gnl\|CDD\|377101	pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.	0
NC_014011.1\|WP_013047533.1\|108482_109664_-\|putative-C-S-lyase	gnl\|CDD\|275146	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase. Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A).	0
NC_014011.1\|WP_013047536.1\|115214_115499_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.8646e-18
NC_014011.1\|WP_013047531.1\|106549_106930_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	3.96508e-66
NC_014011.1\|WP_013047542.1\|122912_123560_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.54111e-85
NC_014011.1\|WP_013047538.1\|117161_117842_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.59878e-08
NC_014011.1\|WP_052292777.1\|124315_124630_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	2.79843e-32
NC_014011.1\|WP_013047530.1\|105923_106418_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|376698	pfam01980, UPF0066, Uncharacterized protein family UPF0066.	6.68437e-63
NC_014011.1\|WP_013047527.1\|100130_101168_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.06579e-116
NC_014011.1\|WP_041459286.1\|101537_102917_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NC_014011.1\|WP_013047539.1\|117847_118768_-\|hypothetical-protein	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.316e-13
NC_014011.1\|WP_013047526.1\|99763_100147_-\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	1.0797e-30
NC_014011.1\|WP_013047540.1\|118793_120596_-\|type-I-MYXAN-CRISPR-associated-protein-Cmx8	gnl\|CDD\|275206	TIGR04413, hypothetical_protein_LEP1GSC082_4029, CRISPR type MYXAN-associated protein Cmx8. Members of this family occur only in CRISPR/cas loci of the MYXAN type, but are present in a minority of such systems. This protein appears to replace the MYXAN system Cas8a1/Csx13 protein (TIGR03485/TIGR03486), compared to which it shows similar length and composition but only about 12 percent sequence identity.	0
NC_014011.1\|WP_148211372.1\|99238_99724_-\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	3.91317e-37
NC_014011.1\|WP_148211301.1\|115515_117183_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	2.17002e-158

>NC_014011.1|WP_013047534.1|109868_112445_+|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase
MKKEFNQRFDHEIDLDVLEHPAEPRLSENATWLLAQRYFIHRYDEEEGGVRQERSFEEFARRVARIIASAETLYLDKNDAKSLLWLQTLEKNIFNDILNRRFLFNSPCLFGAGAGMTTDPKLSTLVYKSPDHMTFEEYETLLASKTKNQQLFACFVIDIPDSIEGIFDSVKDASIISKFGGGVGGNFGWLREKGAGINGGTGGQASGPISFMETWNTMGSVVVQGGKRRAALMGMLFDNHPDIMDFIDAKTEENKLSYFNISVCVSDALLKAVEEEGDFPLISRIDGSVAKTVKAKDLWNKLSESAWKRGDPGVFFIDRANADNLLKLDPEWRIESTNPCGEQPLPNYTSCNLGSINVEAFVTSKGGLPAFDTDGFVDQVYRSIYYLDLVIDACSYPLPRIEERTKRIRPVGLGVMGLADAAILLGMRYGGERFDEYCTSLGESMAAAALCATEEIVSVIGKAPFDESHLVKDLFHKFRDETGQKELFTAEWLKSTTIEDIISLIALMRGSETVPYTLINAIESIVNNEGLGSEEERLAKVKDVLKALESGQIRNSRRLSIAPTGSISMLMDTSSGIEPNFAWTWTRRIIKKDGEGHELREFCHKLLSEELHQELKQTGCISDPTYVTAYDISTDEHVAVTGIFSRYIDSGISKTVNLPYSADVEDVQKVYEMCYKLGTKGITIYRDGSRSAQPIEVKKKEEGVPHTSKVKQRPGLVVFGKTIKQKTPWGSMYVTLNFDGTEPFEVFASIGKSGSELNAMTEALSRAISIGLRSGGKLEDFIATLKGLSGKEYWVFDYDDTHVARSIPDAIAMLLEKLIEKEEKPGEKHDLRCPECGSPMEMISGCAYCFSCGHSPCK
>NC_014011.1|WP_013047533.1|108482_109664_-|putative-C-S-lyase
MGKYNFDAIIDRHHTSCEKWDFLKDKFGRDDLLAMWVADMDFTAPPEVIEVLKERVDHGIFGYTGRTDSYFDSIVQWVDKRHGWKIEANWIRHAPGVVPALSMSVLAFTQPGDGILVQPPVYPPFYSAVNGRGRRVVENPLVFRDGRFEMDFDDLEKKIDSSVKMLFLCNPHNPVGRVWTEEELKRLGEICGRHDLIIVSDEIHSDIVFKGFRHVPIASLSPELAARTITCIAPSKTFNIAGLSTSAIIIPNKRIRDNYTTVLDFLHIDSGNIFGTFALEAAYSKGEPWLEALIEYLEGNVNFIEDYLKENIPSIKLVRPEATYVPFLDCRGLGLSNGALFDLLINKARVAMNNGAWFGKGGEGFMRINIATPRALIKEGLDRIARALACIEK
>NC_014011.1|WP_013047532.1|107070_108405_+|serine-dehydratase-subunit-alpha-family-protein
MFTVKEFLRSEVKPALGCTEPGAVALAVARAWKEADCECVRDVEVTVSSSIYKNGIAVGIPGTNGLKGNVVAAALAAVCGNPEYGLEVLRDCSEEAVQKAQDLVGEGKVKIIADMNRHGVYVKAVVTTAHHLSECVIEGSHTNIIKVTLDGKSRYTLQGISQNTQKNEEKSISDQIKAMTYSETVRLIEDLDEEDVDYVMEGVRMNMEIARLGLDTTRKLGLGVGKTMMKFAGDGTDLRTLGDKVKAISAAAADARMSGASLPVMSSAGSGNHGITAILPVSIVAEHYQKSREETARAIALSHLTTSFIKSRMGRLSPVCGCSVAAGAGAAAGMTFLLSGDLHKAEKAVEILVSNLVGMLCDGAKDTCALKVGTGAYEAYCAAMIVLEGNELDGPQGVVGETIEKTIENASAINIEGMIDVDRIIIEFVSKRYADEEALKNAVS
>NC_014011.1|WP_013047531.1|106549_106930_+|RidA-family-protein
MKKIIASPDAPKAVGPYSQAVMVGGFLFASGQLPVDPATGKMVEGDIQTQFHQLMKNVTAVLKEAGLTFDDVVKTTIFLTDMGNFAAVNAVYAEYFKGDKPARSCVQVAALPLGGEVEMELIACQK
>NC_014011.1|WP_013047530.1|105923_106418_+|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MMVEEFRLQSIGVIRSPFRQRKGMPIQPAGARGIRGTVEVLPKYEKGLQDLEGFSHIYLLYWFHLSEGYDLTVKPFMDSEYRGIFATRAPRRPNQIGLSIVRLVSIKGNTLYIEDIDILDGTPLLDIKPFVPEFDIFNRTFRSGWLEKQAVKAEEVKSDERFSG
>NC_014011.1|WP_013047529.1|103013_105827_-|UPF0182-family-protein
MTKYNPFSEDEWFNNEEATPRRKVKFPVFPGGKKFIWLLAACVVIVFLAIPSLGHFYTDYLWFEALEQTAVFWTMLVPKWILFAVATVVSFALLFLNFRIARRNTLKLLPEDSPFGNFPKTLTSSAVFIGAGILALMNGFSTQKHWDMILRFLHSNPFEISDPIFGKNVAFYIYHLPFWSFMQEWGMGILILSLIGSGALYAFVIVPLFAGNRQTVPQSVFKHLSLLVAALALLWGAGFWLERFNLLYSPRGVAFGASYTDMHADLLALNVMTGLTLLVAILLVVGIYRSTWKFSVATLGMLVVASVLLRGIYPEVIQKYVVEPNEFDKERPFIEYNIEATLHAYGLDKLKNVSILPESEATWDKLEQNKESMQNVRLWDSRPLLRSFKQLQEIRSYYDFIDVDIDRYRFDEEYRQVMIAARELDLKSLQNPTWVNQHVEFTHGYGIVMNPVNEVSPSGLPILWVENLPPRVHIPVDLSRPQIYFGEKPDSYIFVKTTEKEFDYPMGTSNVRTTYEGSGGVSIGSFFRRMLFAMRYGDSKILFTSVFTPESRILFYRNVQQRLRRVAPFLLYDSDPYLVIHDGRLVWMQDAYTTTDRYPYSEPISISMGDRRGYFKINYIRNSVKATVDAYDGTMRFYIVNENDPLIKTWKQIFPSLFSSIEEMPKNLREHIRYPKDMFSIQSETLKTYHMLDPNTFYNKEDVWQTYRGSDGTEPLAAHYMIMKLGDGQPAEFALIAPFMPVGRDNMIAWMAGRCDGEKYGELLVYTFPKQKLIYGPAQVEALTNQHPEISSQLSLWSQRGSDVIKGNIMVIPIEDAVLYVQPLYLRAENSDLPELKRVIVSTGGRVEWGERLDEALEKLLGKREGKTSTKPPLPAKEEAGEEKPLLYDGAIKELVQQAQHTWEQAQKALKEGNWNRYGEMMKQLESLLQQLGNAIQ
>NC_014011.1|WP_041459286.1|101537_102917_+|sodium:alanine-symporter-family-protein
MHREVFAVEVIDVIRSVNNVLWGYVLIFLLCGTGVYFTFRLNFVQIRKFGVVCKNAFGGITLFGEKAGKEGMSSFQSLATAIAAQVGTGNLAGAATAIASGGPGAIFWMWISAFFGMSTIFSEAVLAQTYKEKDIDGQIVGGPAYYISRGFGSKGLAVFFAIAIIIALGFIGNMVQSNSISDAFQTAFNLPALYVGIALAILAGLIFFGGISRIASFTEKAVPIMALMYLIGGVVVLAMNVDAILPAIKMIFYGAFNPKAATGGIIGVGVKEAVRYGVARGLFSNEAGMGSTPHAHAVAKVKHPAQQGLVAIMGVFIDTFIVLNITAFVILTTGVLDGKTTGIALTQAGFTQALGGFGNIFVAICLLFFAFSTIIGWYFFGEANIRYLFGIKGLTPYRILVMIFIVIGSTMKVDLVWELADTFNGLMVIPNLIAVLGLAKVVSKALDDYDNDGMLKSSK
>NC_014011.1|WP_013047527.1|100130_101168_-|FAD:protein-FMN-transferase
MKKVFLAVILGIILFLAIFFMKSVKRPHPLEQTSYALGTILHFQIWGKDANQALEKALSRIHDIEVHMSTHDPNSDIYKVNVSSGSSFVPVHEDTFYVVEKAIDYAYKSSGTFEPTIGGLVNLWGIGTPEERLPSEEEIANAVSLIGYEEVQLDRKNMSIRLPRSGQHLDLGGIAKGYAADEVVAILKRKGIKSALVDLGGNIFVLGTKPDSTLWNVGVQNPLEPRGQYLGVLRVSNKSVVTSGNYERFFEKDGKRYHHIFDPATGYPAESGLLSVTILSDRSIDGDALSTALFVLGKEEGLKLASSIEGVEALVVTKEKKIYGTAGMDDFFKLTNKEYTYEKGK
>NC_014011.1|WP_013047526.1|99763_100147_-|NusG-domain-II-containing-protein
MKKGNKIILTAVLFLLVLSSAGNLLYRSHLNKNKPVALVEQNGEKLREISLKDILASEDWVIHKGEEQSVIRIEPGRIRFLEATCPHQQCVKTGWLSRPGETAVCLPYKLSITIIGPAGEGPDALSH
>NC_014011.1|WP_148211372.1|99238_99724_-|Gx-transporter-family-protein
MIVIGLLVGLALTIHVAEAQIPMVFPGIKLGLANIITLMALDLYGWKEALMVTLLRVGLGAFFTGNAISFLCSFTGGLLSCLVMIELHRRFKESVTLPYISIAGAISHNIGQLIVIVLIIQNLYVFLYLPVLLVSGVITGYGTGFLASLLSSRIKQVPGIL
>NC_014011.1|WP_013047536.1|115214_115499_-|CRISPR-associated-endonuclease-Cas2
MKKWFIISYDIRNEKRLRKVAKLMEGYGQRIQYSVFRLHLNERGLEHLRWKLSKCTTAEDGLLITELCEKCISRLRMRNGENAWPDEPEKWIVL
>NC_014011.1|WP_148211301.1|115515_117183_-|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1
MGGGDLLTITSENEALLRISSLHALLYCERLFYLEEVEEIRIADASVYAGRTLHEELAKEEGEEFRSFFLSSETLGLTGKADAIRHRNGNWVPYEHKKGKPVLRKGEEPQAWETDIVQVTAYALLLEEYFGRELQEARIRYHGTNTTITIKLSNENREKVYNAIQRAQTLRQRTERPPISDSPRKCLRCSLAPVCLPEEERFSRTPEWEPIRLFPQEIEGAALHVTGHSTRIGRSGESFKLEESDTPPQKIPSGNLHSITIHGNAQVTTQALRLCSDKGIHLHWYTGGGTHLGSFVPGPGPVQRRIRQYQALINPGQCLKLARRTVLAKVESQLRFLLRSTRGKERDSEMEKGLNEMRSLLKAIPAAEGVDILRGIEGNAAHLYFSLIPKILSKDVPPEMIPSGRTRRPPKDRFNAILSFGYSMLYRAIIQSIIVVGLEPAFGFLHSPRSSAHPLAMDIIELFRVPVWDITTIASINRKQWNPESDFSATKEKVWLSNEGRKKALILFERRIQEKWKHPVLEYSLSWQRAMELEVRLLEKEWTDAPGLYARSRIR
>NC_014011.1|WP_013047538.1|117161_117842_-|CRISPR-associated-protein-Cas5
MIRLRVTAPFATFRHFATGSFRPTIDFITPSAAFGLLLNIAGVEMRGGEGKNGTTLIQKGLPPIKLAIGAIKFPEQQEILQQLHNYPVGTTRKEWKPFTKGSKYNILPVTRAFLSGIDAIIAIDSPDFEEKLRNSLEGKTQRKYGLPFLGDNSFILDRIEETTPSLPAYWYCCLEEPLIELDKQRINRFTITIDREDMSKTRTALFAPTKERISEIPSGAWVEVIY
>NC_014011.1|WP_013047539.1|117847_118768_-|hypothetical-protein
MNLFATVLTNAAPSANYRGESAENRAILQKITKGRLQYAIVSPESMRNAIREGLRSMGLPCNRSRLHDEEQLAVKFEDYPDANVYADDFFMGWLIAAGKKDREKIKKEIKEKGRDVTLFTFKRDSVLRMNLAVALEPYRHDTVFTQSPQHLESPWKNADSSQLLHRETIFTSFQYPFALNLEDCKEKAEWTKTLLSVIGQLGGVAGNHARSLFDMAPSSIIIRMTHKLAAGYDTYGFKTEENGTHTFPEIMEGILHDNLPGSEFLIGGKIVCDMNEIKQNALLEKGTTLNRNAGKILEMAGNRAFG
>NC_014011.1|WP_013047540.1|118793_120596_-|type-I-MYXAN-CRISPR-associated-protein-Cmx8
MKTKNAKEKNETILELEYSLDNLPSAQHKTGLAGLVLLLETMEEREMAPLPEYKENIDGTWTFQFTRKSFQAVFDELYDGENIIVESPSKWSGASPIEIREKEVEKNGKKKTERVFVYEITVPKGSFFKGLFSEGPEGKKRLELWRDALWSTYKGKPASRGVYSERVQNNPCSFVEKLWSSLIRKKGGIEDLAGSLLLGAEGFNAEGIPFKGLLHENVLLHFTPIACALFVVRNFMVKKGNRDNKGTYSVEWDENGYVFVMPEITKIKPYLGELRKWFQNDPEKETKSFRPSSSIIDLPEESGLEFLSAISGRRLETEGVFDRVEGVEYYHMTKKGNSVKLLSSSRIPVSVPILNEYNSIVSAGGRKKPLNFLYKTLRIRNLLNGTHWHVGMEGILETYPSEFFIWSREGSPRNIPFFGLDINKKFKEIAQKLYYIEQEAKEMEENGVNSNLIDHTERLAAKVRNIVRNFVISELKSRPKIKIPGGKTHLEQTKEDSFLAYPEDYLAELKKICTGAFLALRGRSGTDIAEFFTGTLCAIPQFLKNDFKNEGKDDYLLMAKSLVDPKEREKIKLFAMLALSACSYVYYPKERQSQPEIETE
>NC_014011.1|WP_013047541.1|120625_122908_-|CRISPR-associated-helicase/endonuclease-Cas3
MTILAKKGIAVGNVTIQKTLLEHTQDVLNASFSLFGKEHEPKHLGEKWLSFFKIHETEFFNFSQNLKAAIVFHDIGKSNDQFQKALQGNAPQSLRHEFLGGWILSQELCRKFIESQGIDFHIIRASVMGHHLKLKKGILNSSDYDNPLIKILANGVQDILDLFSSEFNSKESCLLNHAIPQRINIKEEKIALDFDSIEKELRRSFPAQEPQKLRLLRAVRTALILADAAGSGLAREMNQSVDVPMTRWIDNAFDKNNLLSKEKIEYDVIAPRCTQIETTGEKKPFLFSEFQLASSTLPDRTCLLAPCGSGKTLAAWKWGSGVASRHPISRFIFLYPTRATATEGFRDYVSWAPETDGTLLHGTSNYELQGMFDNPDPRSEKEFLTNDRLFAVGLWQKRLFSATVDQFLGFMRHDYRSSCLLPLLADSAVVFDEIHSFDQTLFSALLGFLREFNVPALCMTASLPINRLDQLREAGLKIFPESIASFPDLKEKASAMRYRVKQCKKEEALEEALKAYKNGEKVLWVVNTVKRCQEIAMELQESFAENLLCYHSRFRLKDRQKWHKKLIEKFRDPEPMIAITTQVCEMSLDLSASLLISEFAPVTSLIQRMGRCNRYLEICEGGRILLYPPAKNLPYSKEDIEIAEAFVRNINNKTINQEDLQSLLEEFSPQNREMEKLLPFLNSDAFAFTFGGGIRDGDVYTVSAILESNINNYWNLRKQFQPIDGLILPAPQNCVERGNGLPSYLYIAKGRYVESLGLLV
>NC_014011.1|WP_013047542.1|122912_123560_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MVDLEFQLHGKTIDADHGYQLYSAITDILPSIHHAEHRRNISIHPINGAPCGERKIALNNKSRLTLRIPVDKVPDFLFLCGKFLRIGTHNVTVGIPVSRKLVPYPILGSRLVTIKGFTEPDQFLDAVQRQLDTLNILGTPHLLLRSHLKSIEGKTDNRISSPFIKRTLCIKDKNIVGFPLLVSKLTAEESLRLQRTGLGGRRMMGCGVFIPQRRE
>NC_014011.1|WP_052292776.1|124124_124313_-|hypothetical-protein
MLFKSFHIALETATKLQTEESDILIRPDLSPFNTFDISKAENIIEIGYMEAKRMLGENKIVG
>NC_014011.1|WP_052292777.1|124315_124630_-|patatin-like-phospholipase-family-protein
MALLITDNLGDVTFDEACIPLAMIATDITSGEKVALKNGNVAAAVMASSCIPGIFIPVEIDNRLLVDGELVENVPITPLKDMGANFIISVDLFGKLKQKNQRIS
>NC_014011.1|WP_169302785.1|125026_125725_+|FadR-family-transcriptional-regulator
MFEEIKTRTLQEQILEKLKDLIKDGSLKAGQFLPSERDLAKTLGVSRIPLREALNKLQVLGVVERQHGRRTLIKGLGGIPITEIIEIISDSGDEIETVNQLKEIRLILEVEAAGLASQRRDKDDLKRLEELVEQMEKEYKEVEKLQVLSLRFHMAIVEAAKNRILSLVYLFFHDLQQRSRKYSKRIHSDPIGIVKDHKEIFKAIQEKDRKLAEELMRSHLDQVTFILPYQEK

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Crispr_ID: NC_014011_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014011_2

1231516-1231627

Orphan

Consensus_repeat	Method
GAGGTTAACCTCTCCCGCTCAAAAGAGACTTATTTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014011_2

>merge|NC_014011|2|1231516-1231627|CRISPRCasFinder
GAGGTTAACCTCTCCCGCTCAAAAGAGACTTATTTCACCGTTACTGGCCCTGTAGATGTTAACGCCCGGCCAGGAGGTTAACCTCTCCCGCTCAAAAGAGACTTATTTCACC

>NC_014011|2|2|1231516-1231627|CRISPRCasFinder
GAGGTTAACCTCTCCCGCTCAAAAGAGACTTATTTCACC	GTTACTGGCCCTGTAGATGTTAACGCCCGGCCAG
GAGGTTAACCTCTCCCGCTCAAAAGAGACTTATTTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014011.1\|WP_013048596.1\|1228118_1228820_-\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NC_014011.1\|WP_013048606.1\|1243921_1244278_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380350
NC_014011.1\|WP_013048595.1\|1226937_1228122_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NC_014011.1\|WP_013048594.1\|1225527_1226673_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_014011.1\|WP_013048590.1\|1223747_1224224_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NC_014011.1\|WP_013048592.1\|1224471_1224633_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NC_014011.1\|WP_013048599.1\|1232608_1233967_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|235884
NC_014011.1\|WP_013048603.1\|1238568_1241664_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_014011.1\|WP_013048604.1\|1241660_1242299_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_014011.1\|WP_013048591.1\|1224309_1224459_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|226366
NC_014011.1\|WP_169302811.1\|1243111_1243675_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_014011.1\|WP_013048593.1\|1224850_1225528_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_014011.1\|WP_013048607.1\|1244274_1244733_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_014011.1\|WP_013048608.1\|1244904_1246158_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NC_014011.1\|WP_013048598.1\|1229530_1231477_-\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|273983
NC_014011.1\|WP_013048600.1\|1234264_1235959_-\|hypothetical-protein	unknown	unknown	unknown
NC_014011.1\|WP_013048597.1\|1228803_1229511_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NC_014011.1\|WP_013048601.1\|1236090_1237251_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_014011.1\|WP_013048602.1\|1237270_1238572_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_014011.1\|WP_013048589.1\|1223328_1223733_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921

Protein	Function_ID	Function_description	E-value
NC_014011.1\|WP_013048596.1\|1228118_1228820_-\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	4.02468e-95
NC_014011.1\|WP_013048606.1\|1243921_1244278_-\|cupin-domain-containing-protein	gnl\|CDD\|380350	cd02221, cupin_TM1287-like, Thermotoga maritima TM1287 decarboxylase, cupin domain. This family includes bacterial proteins homologous to TM1287 decarboxylase, a Thermotoga maritima manganese-containing cupin thought to catalyze the conversion of oxalate to formate and carbon dioxide, due to its similarity to oxalate decarboxylase (OXDC) from Bacillus subtilis. TM1287 shows a cupin fold with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	2.62757e-17
NC_014011.1\|WP_013048595.1\|1226937_1228122_-\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	4.37263e-170
NC_014011.1\|WP_013048594.1\|1225527_1226673_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.61925e-42
NC_014011.1\|WP_013048590.1\|1223747_1224224_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.42357e-16
NC_014011.1\|WP_013048592.1\|1224471_1224633_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	4.46541e-09
NC_014011.1\|WP_013048599.1\|1232608_1233967_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|235884	PRK06917, PRK06917, aspartate aminotransferase family protein.	7.12908e-160
NC_014011.1\|WP_013048603.1\|1238568_1241664_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_014011.1\|WP_013048604.1\|1241660_1242299_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.00594e-14
NC_014011.1\|WP_013048591.1\|1224309_1224459_-\|pilus-assembly-protein	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	0.00018383
NC_014011.1\|WP_169302811.1\|1243111_1243675_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.28859e-56
NC_014011.1\|WP_013048593.1\|1224850_1225528_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.77263e-61
NC_014011.1\|WP_013048607.1\|1244274_1244733_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.84942e-27
NC_014011.1\|WP_013048608.1\|1244904_1246158_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	1.04148e-103
NC_014011.1\|WP_013048598.1\|1229530_1231477_-\|TRAP-transporter-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	0
NC_014011.1\|WP_013048602.1\|1237270_1238572_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.37696e-51
NC_014011.1\|WP_013048597.1\|1228803_1229511_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	3.67789e-88
NC_014011.1\|WP_013048601.1\|1236090_1237251_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.05018e-52
NC_014011.1\|WP_013048589.1\|1223328_1223733_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	5.65226e-13

>NC_014011.1|WP_013048598.1|1229530_1231477_-|TRAP-transporter-permease
MTNSSTSTSQDVQPVDVDAKKRELHGWQYWIVAALALSASVFHLYTAVFGLRSAMYQRSIHWLFMGGLMFLLYPVSKNRPKNRIDWWDWVFAGLLIAGCLNIILNWEVITMREGAPITSDIYWGTIMILLVLEGTRRAMGLPLPIMATIALAYAFLGPYFPGILSHGGFALDEIAPFQYLRTDGIFGVPLGVSASFIFLFVLFGAVLSVSGAGQFFIDLSIALTGKSRGGPAKAAVVASALMGTVSGSSVANTVTTGAFTIPLMKTAGYRSEFAGAIVAAASTGGQVMPPVMGAAAFIMAQFLGISYWDIVIAAAIPAALYFFSIWAMVHFRAGKRGIRAMTDEEVPKIGPVLREGWHLLIPIITLVLFLATGYSAVKAVFWSIVCLVGASWLGDEKYRMTPKRVLNSLIDGAIGAVDVAAACACSGIVIGVIGITGVGLAFSSFVMSLSHGILPLALVLTMIGSIILGMGVPTTAQYIITSTLAAPALAQMGVPMMSAHLFCLYFGVLADVTPPVALATYAAAGIARSNAIKTGFTALVVAVAGFIVPYMFVYNSYLLFQGSLIKIVLGCATAFLGIIGLAAGVQGFFVTHLALWGRAALLSVPLLLIHPSLISNCLAVGIIALMFVIQKRRAAQVVSPVLEENPEQ
>NC_014011.1|WP_013048597.1|1228803_1229511_-|CoA-transferase-subunit-A
MPKKTIKPVMSAEEAVRFVKPGASLMVGGFNYGGVPYTLVDALVAADVRDLHLIANDTLYANDKFPQGVGHGKLVVNGQVRKVTASHIGLNRETQRLFNEDKMELELVPQGSFVERIRAGGFGLGGILTPTGVGTCYEEGKQTIEVEGKKYILELPLRADIAFIRAYKADRWGNLTYFGTNRNFNPAMATAADIVIAEVDSIVREGEIDPNDVVTPGILIDILVLKGDGYYASRT
>NC_014011.1|WP_013048596.1|1228118_1228820_-|3-oxoacid-CoA-transferase-subunit-B
MLPELDEKIVRERIAKRIALDFDNGAVVNLGIGIPTLVSDYIPDNVRVIMQTENGVVGAGPSPEEPDLRFIGAGGRGLSLIDGSSIVASEVSFGLIRGGHLDATVLGALEVDQEGNLANWWIPGKLVPGMGGAMDLVTGARAVYVATTHTDKKGRPKLVKKCSLPLTGAGVVSTIVTEYCVVRKQSGRMVLTEIAPGVNLEELLANTGMELEVSSDLCLMKGTEEEVCEEASK
>NC_014011.1|WP_013048595.1|1226937_1228122_-|thiolase-family-protein
MTKAVILSACRTPGGKYGGSLKPFEATDLGGKAIAEAVKRSGIATDDIGEVIMGNGWQAGVGANPARIAMVKANLPQNIPAFTVNKRCGSSLRTIMLMSDRARLGDIKAGVAGGMESASNTPYLLPEARWGHRMGEKKVLDVLHQDGFICPVAGDLMGTLTERLVEEYNITRQEQDEYALSSHMKAVEAMEKKLFAEETVPLIIRDRKKGEIAIDSEEIPRKDTTIEALGRLPAIFKQGGTITAGSSSALCDAGSAVVVANEEWAKNEGHAPMARILGYASAALDADRFGIAPTLAMPLALEMAKMTINDMDLIEINEAFAAQIIACHRVMPLDMQKLNIHGGAIALGHPIGASGARILTTLLYALKNTDKEFGIASACIGGGQAAAIVVQRLN
>NC_014011.1|WP_013048594.1|1225527_1226673_-|sensor-histidine-kinase
MSEDSFHAKLKSIYDKVCKYVALNLSNVSVIRQQELLKLKEVREKLDSNQKDIDYLQLSSTKIDSAFKAAQQELVEAMEEEDSAAELAAYEKADTLRKKLSTHQEREQNLKLQRSFLLKEENGVKEFLSRSEDMANKFRLILEFLQDQGIKAMSDSDTEKNIKLLSAAFSLAELDSRFLARNLHDGSAQKLSGAIMLCELAERYLEARKIKEAQIELGKVKTQMQEAIFDIRTLLFQIHPQGLEEGLDVALERYAKQACDRYGVDISFQTDGNITGLSMILRSNLFRVIHQALDNAIQRGAAKKVDISLSAKSDGFSARIADNGKGFDVAKAKTIAQERGSYGLTNMEERLRLFGGKLTIDSSPGNGTVILMSVPIPEDDR
>NC_014011.1|WP_013048593.1|1224850_1225528_-|response-regulator-transcription-factor
MKKITVVLADDHSLFRESIRKILDMEDDIEVVGEARDGLEAIDVVKKTAPHVVMLDIRMPRADGIEVVTTLRKEGCKSAFVVITALDAENQITRVSRAGIEGYVLKSSGLAELLYALRTVASGERYVDPLIASKLLKSFSPHAEFKSKIETLTIKEKEVLYWVSHGLSSREVGRRMILSNKTVQNHMCQILKKLDVQEKSQAIALAWKWGLTEHPPTEDEEAVSN
>NC_014011.1|WP_013048592.1|1224471_1224633_-|Flp-family-type-IVb-pilin
MLKRLRNLVTDEEGQGMVEYGLLLALIAVVVIAALLTLGPKVAGIFTEVEGKL
>NC_014011.1|WP_013048591.1|1224309_1224459_-|pilus-assembly-protein
MFFFTDEGGQGLAEYGVILALISVAAVVVLSLIGPKVLQLFTNANSVLP
>NC_014011.1|WP_013048590.1|1223747_1224224_-|prepilin-peptidase
MEWVTLAVLCWAGFYDLKYKKVPNWLTYGLLLAAILFHSFYGAVSMSLFGAGIGLGWFLIPYLLGGMGAGDVKLLAAAGAMAAWPGALYVVLYSSVAGGIVVIALTLKRVDFQDFWVALAGGPRRFFKSIWMSGRERRKEKVPYALAIAIGYAIYLLL
>NC_014011.1|WP_013048589.1|1223328_1223733_-|pilus-assembly-protein
MRMLEVLKKRSRGQAIVEFALVLPLLLVLVMGIIDFGLIMQQYLTLNQGAREGARMASVGGSAADVTSRVEEILAVRWTSAEVSVNVTETDKGSYKESVVTVQAPVAFLTPLGAFVEGLTSNWQAHASASFRVE
>NC_014011.1|WP_013048599.1|1232608_1233967_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MVCVPEYGPMIPRSYKTALRKAVRGEGMYLFDEEGKAYIDGCCGALLSSVGHGNKEIADAIYKQLTTLEFAHPSRWYNDATMEASKEVASITPDGLNYVWLVSGGSEAIESALKLARQYFVERDGEGSSKYVMIARWNSYHGSTIGTMGLAGSMARRRTFFPLYQDHPKIASHYCYRCPYGLSYPSCDLRCAHALEHEIRRIGQQYVAAFVAEPIVGSTVGALHPPKEYWPIVRDICSRYDVLLIADEIMTGIGRTGKNFCLNHWNVTPDMICSAKALSGGYSPVGALIAKDEIVESLKKGSGAFQHGHTYNANPVTAAAVTATLRLIKREKLVENAALQGERFYKKLETLYQIPIVGEVRGMGLMRGIEIVANQSTKEAFSTSVNAAGVVTGECFKEGLVIYPGRGQIDGIEGDQFLVAPPLTVTESEIDEIFMRLERGLRSASDKLLSGK
>NC_014011.1|WP_013048600.1|1234264_1235959_-|hypothetical-protein
MKRFISLLVMFICAASFFIGPCAEGAVTLKDEKSYDPLEVLQALNYCTYSLSKIVSFNDRVVLSFEYDNIINNLNLNAITDEEIVKLMAKLMDTLKDEIISERKRERIEKSYQKRLERTLYNFLSGVNVSPQSVVSAAVSAVSSMGSMYVNYQRRIEEYMDESEEIIEALDDEKLNVINSIRKDMLTASWSIIKKYNIDDQYRLTEKQINEFVENVKSNPAEMQHRKLERLLQDNPAFEYFPPFWYYYSLTREEDEVFVLDCLNRFLQTQRPIFRRDILWASVLMERVRLQKETDSQSIRADLEEIIRQSNNSDWQNFLFVGLAYTKLGMVDEARRNLQRNIDNGYEVSLNSRLLAEILLDTGDQLQFEETMKKMLSDTRVSNSDKLYLIGRCRNVTYLNRFKEEISEIRLSAVNEAAATELVSPTYLLTIPNKWLVEDAPFDVRLFNENIDRSYHFESIDDPALVISTKKKRVAIKFPETGHTIARKPEKGITVNIKHPLIDMTLIYELEKKDIGRAAKTLIEAAVPFYSEVLGNYRLKEVAFMDERYIFTAKGILAESKDNK
>NC_014011.1|WP_013048601.1|1236090_1237251_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKFTKKLLILVTIIVALGGLSLFGPLKKKPEASQDGSSALPAAAKVSVITVEKTPLLRKGFEENSTIEAIERVVVYPKVTGRLEFFHVRQGDPIEKGQVVAVLDHRDIDAQIASLKARIAVAEAQVAEARAALNNAKTERERYERLLKEGFSTQQQLDNKVTAYLQAEARYKLSEATVLQTRSELKNLEVTLSEYYIKSPITGTVLNDYAHTTGAMMGPSLAVVEIANVETLKAVVKVPEARAIGLEKGMKGWIRSDGLGDKVFEGAIERISPFVKEDTRTVQVEVYVVNGQNGSRLVPGMFARVFIVRQEAENALVVPVDAVIKESEAKVLLVKDGKIKETPVKIGIETDSVLQITEGVAEGDIVVISGGRLLKDGDAVEVSQQE
>NC_014011.1|WP_013048602.1|1237270_1238572_-|TolC-family-protein
MRRIQKIIIISMVLLFIGGSLWAAASEDTVLTLEKALSVAKEQNLDILSAQQELVRAKGKLTEARAGGLPSLNLGAGYTRREKPDLAGNDEENIFGAALTLTQPLYQGGKIRAGKQQASIEIQQAEYYYVEIAEQVALNVYNRFYAVLLEKENVKTAEDAFAFAEKYLDEVKKKHVLGLATGLEITRAEKQQAESRTALIRARNNLEVAKINLLELLNVKLDTSYTIEGNLSYAPVAGQPEESLKKALAYRPDYQRAKLQVDVQDQQIRIAQSGLKPSASVSGSYRYDDPEQAYYESGDTWQVRLTVDIPVMDSGLTHGRIVQQKALREQTMRNVEKKEESIRSEVSSVYLDLKTAAQVLEEAKLNLKLAEETLRLAEVGYREGVGIQLDVLDARASLTQARREYSAAVKDYAFAIVRLRKAEGVLTEEPVLP
>NC_014011.1|WP_013048603.1|1238568_1241664_-|efflux-RND-transporter-permease-subunit
MKVTDISLRRPVTVLIGTFALIFFGILAMRNMGMERIPDVDFPVVAVSTTMVGASPTVIDNDITDVLEEKLNTISGIENIRSNSYEGRSLVIVEFELGRNIDAAAADVRDKVNLAISDLPTEAETPIVQKFNAGDSPVITLGVMGTAPYKIQSHFADKVMKEHLQTVDGVGSVETIGLREREVRIWLDPALLESRNLTVKDIKDAIKDKHVELPAGRLESERRELSIRLEGEYASVQELEELPIVSRNGAVIRLRDVARVEDGYEDLRSIATYNGEPVILLEIRKQRGANEVFLADGVYRELDSLNKLVPEGVKIEMLDDTSGFIRKSMAGVLSDTLIGIGLCSLIMLFFLRTIRATFVTVVTIPVCLLGSLIVLRALGITINNLSMMGLSLAVGMVVDATTVVLENIHRHLENGKLPMQAASEGTSEVGFSVLAGAATTICVFAPIASMGGIIGRFFYAFGITVVMTIVISLVLSLTLTPFLCSRILRKDHPGKIALRIEAFLVRLEEAYKKGLAFSLKHRFIVLGAAAGIFALGIFIAGFLGTGFFPSEDRGSFSINFELPAGASLAESRKFMSELGVAVRDHAEVAYTYGTIGSGIGQEVNKGKLAVTLIPRNQRATSTEIMGKMRKQFSNYKDVELTYGTWSSDITLTLVGQDTEQLDRVAQKVKKDLEQDGRLTDISTDVRLDSPRINVGINRGLADELNVNIRDLSQEIQAYFGGVKAGIFKDGGYRYDIRLKAEEGYRRNIQDIQNIAFKDGNKNLIKAPGLIKVEEGRGPTLVKRYDRQRSLTISANTAGISSGEGMTLVMGTFRKYAPTDGSIRIVPTGMSKHMKSNFKELFMALAIAIILVYMVMAVQFESFMYPFMVMFSLPLATTGVFGILLLAGIELDMMSMMGIILLVGIVVNNAIILVDFANQRKASGCDRRTAMQEAAPLRLRPILMTALSTSIAAVPIALGLSEGGEIRQPMSTAVIGGMLTSTFLTLFVIPAVYVILGDVKEKAAQVAMSVFKEKTSAVQIKEPGANLSGGEK
>NC_014011.1|WP_013048604.1|1241660_1242299_-|TetR/AcrR-family-transcriptional-regulator
MSRIQSKKKEVISELMRETVYKAARSVIEQYGWTGTTMDRVASEAGIAKGTVYNYFKNKRELMMVVMEKNIEPINEQVITIVQRKKFSTMKDTLSAIVETVIVELIRNKKIISAMILAFHEDGELRRKFDPRSHPYQNVREVIHKVISQGVNNGEFRPIDPNLAEAMVNSLFSGISRQIALGDIDISKEEVARDVASFVLRGLLAPVEGGTL
>NC_014011.1|WP_169302811.1|1243111_1243675_+|GGDEF-domain-containing-protein
MSRISFQLKTRTFLDGKIIEEQLETLKDLSIRDSMTGLYNHKHICQRLEEEIRRAFRYDSPLSVGIFDLDGFKNVNDTFGHQEGDVVILRVAQTMILTFRNTDILGRYGGDEFLVILPETNLESAVTCSERFRKNLLERLQGTRNDLLSISGGVATLKKDDSAQSLIQRADTLLYEAKKLGKNTIVW
>NC_014011.1|WP_013048606.1|1243921_1244278_-|cupin-domain-containing-protein
MIIRSSQIEELESHPLFGVLDGVGSRTISPDEFYEESNFHEISWVEMEPRALIPEHEHEGCEEIKIIIYGIGMYTEGKQKERVGAGDVILTEKGLRHSLENIGSYPLVYIAISSKCNG
>NC_014011.1|WP_013048607.1|1244274_1244733_-|universal-stress-protein
MKKALVAIDQSQNSQSLISYAFRFAEKNSIERLDFIHVVTRIDLTIPGYVDYPPHYNEDSIRQSFLNMIEKGMRESGASATPFEFVLATGTPYEEILRMAEKNKYELILIGHRGLSNLERFFIGSVAAKVVRHAPCNILVHLPKETEEPAKT
>NC_014011.1|WP_013048608.1|1244904_1246158_+|arginine-deiminase
MKIQVNSEIGKLRAVIMQPPGKGIERCTPLNIGALAWDAVPSPHKAEDEHKKWVATVEKFGARVFLMEDLLRKILSVSKVKKELISQLVQTEESFITRQTMDVLQEYLLGLSAPKLVDQLLFGITKDELNKAAGEVSLVDLVDKKNEWCLFPMSNVLYSRDPAAVLGNGIVYGNMFNRDRIKEPYCIRAIFKHHPEFRNLEFKTWYGEDPDDATPVEGGNVHCYSPNVFIIGINERTHPASIEKIAQRTMEDGAITDVLALMFENPRLSSTDSIGLTVHVDMFLNMIDYDAFLFFPYIEKKITVLHITRGKGGRLHVKRESSLFGAIKKVLKLDSIRIIKVGGDESEAVAFSEQRAGSGGNTFNLEPGKVCIWDRNVATMKALEKGGIDVVAVEADELVKGGGGPRCSTMPLWRDDI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014011_1	1.9\|113103\|34\|NC_014011\|CRISPRCasFinder,CRT,PILER-CR	113103-113136	34	MG945220	UNVERIFIED: Microviridae sp. isolate 1190-1602, partial genome	3506-3539	5	0.853
NC_014011_1	1.9\|113103\|34\|NC_014011\|CRISPRCasFinder,CRT,PILER-CR	113103-113136	34	MH992213	Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome	3002-3035	8	0.765
NC_014011_1	1.18\|113745\|35\|NC_014011\|CRISPRCasFinder,CRT,PILER-CR	113745-113779	35	AP013580	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, * SEQUENCING IN PROGRESS *	21319-21353	8	0.771
NC_014011_1	1.11\|113244\|34\|NC_014011\|CRISPRCasFinder,CRT,PILER-CR	113244-113277	34	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	18029-18062	9	0.735

1. spacer 1.9|113103|34|NC_014011|CRISPRCasFinder,CRT,PILER-CR matches to MG945220 (UNVERIFIED: Microviridae sp. isolate 1190-1602, partial genome) position: , mismatch: 5, identity: 0.853

atactctc-cttgccgctcttaaggctgctggact	CRISPR spacer
-tgttctcacttgccgctcttgaggctgctggaat	Protospacer
 *..**** ************.*********** *

2. spacer 1.9|113103|34|NC_014011|CRISPRCasFinder,CRT,PILER-CR matches to MH992213 (Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome) position: , mismatch: 8, identity: 0.765

atactctccttgccgctcttaaggctgctggact	CRISPR spacer
aacgtcgtgttgccgatcttaaggctgctggtct	Protospacer
*   ** . ****** *************** **

3. spacer 1.18|113745|35|NC_014011|CRISPRCasFinder,CRT,PILER-CR matches to AP013580 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.771

-gtaattaacatctacgtcttttacttttccacctg	CRISPR spacer
tgcga-aaacatcttcgtcttttactgttccatcag	Protospacer
 *..*  ******* *********** *****.* *

4. spacer 1.11|113244|34|NC_014011|CRISPRCasFinder,CRT,PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 9, identity: 0.735

ctgttagtgattccaaccaattcccccaccactg	CRISPR spacer
gcggtaaatgttccaaccaatgccccaaccactg	Protospacer
 .* **.  .*********** **** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1033694 : 1041469

Staphylococcus_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013048384.1\|1033694_1034966_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	45.5
WP_013048385.1\|1034965_1035451_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.9e-35	48.7
WP_013048386.1\|1035472_1036714_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.3e-110	51.3
WP_013048387.1\|1036746_1037406_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.5e-34	37.6
WP_013048388.1\|1037387_1038497_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.4e-47	34.1
WP_013048389.1\|1038474_1039950_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_013048390.1\|1040050_1041469_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	7.3e-63	32.7

DBSCAN-SWA_2

1111367 : 1190872

Vibrio_phage(28.21%)

integrase,protease,terminase,head,tail,tRNA,plate,portal

attL 1131055:1131077|attR 1170131:1170153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013048462.1\|1111367_1111766_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_169302803.1\|1111762_1112710_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_041459590.1\|1113086_1116644_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_013048465.1\|1116938_1117769_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
WP_013048466.1\|1117801_1118077_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	3.4e-17	54.9
WP_013048467.1\|1118200_1119511_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_169302804.1\|1119553_1121389_-	prephenate dehydrogenase	NA	NA	NA	NA
WP_041459350.1\|1121364_1122591_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	8.8e-41	32.2
WP_013048470.1\|1122571_1122823_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_041459351.1\|1122838_1123423_-	guanylate kinase	A0A1L2JY06	Liberibacter_phage	7.7e-19	34.5
WP_013048472.1\|1123406_1123670_-	DUF370 domain-containing protein	NA	NA	NA	NA
WP_013048473.1\|1123675_1124560_-	YicC family protein	NA	NA	NA	NA
WP_041459592.1\|1124586_1125705_-	GTPase HflX	NA	NA	NA	NA
WP_013048475.1\|1125706_1126333_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_013048476.1\|1126329_1127007_-	(d)CMP kinase	NA	NA	NA	NA
WP_013048477.1\|1127111_1127834_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_013048478.1\|1127837_1128380_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.1e-19	36.8
WP_013048479.1\|1128351_1129125_-	segregation/condensation protein A	NA	NA	NA	NA
WP_013048480.1\|1129137_1130133_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_013048481.1\|1130192_1130969_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
1131055:1131077	attL	NA	NA	NA	NA
WP_013048484.1\|1131564_1131897_-	hypothetical protein	NA	NA	NA	NA
WP_169302805.1\|1131838_1132123_-	hypothetical protein	NA	NA	NA	NA
WP_169302806.1\|1132161_1132485_-	hypothetical protein	NA	NA	NA	NA
WP_013048487.1\|1132494_1132872_-	DUF882 domain-containing protein	R9ZW03	Cellulophaga_phage	6.5e-19	46.6
WP_013048488.1\|1132946_1133543_-	DUF4376 domain-containing protein	A0A1S5R1J2	Pseudomonas_phage	1.0e-18	54.0
WP_013048489.1\|1133676_1135362_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	3.8e-50	54.9
WP_013048490.1\|1135373_1136030_-\|tail	phage tail protein I	A0A059WLJ8	Vibrio_phage	4.0e-24	37.4
WP_013048491.1\|1136022_1137132_-\|plate	baseplate J/gp47 family protein	A0A059WFM2	Vibrio_phage	6.7e-88	46.4
WP_013048492.1\|1137118_1137439_-	GPW/gp25 family protein	A0A067ZJ13	Vibrio_phage	3.3e-16	50.5
WP_013048493.1\|1137442_1137832_-\|tail	phage tail protein	A0A0C5AN08	Bacteriophage	1.0e-22	39.1
WP_041459598.1\|1138144_1138573_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	5.3e-25	45.9
WP_013048496.1\|1138596_1139610_-	late control D family protein	A0A067ZG47	Vibrio_phage	1.6e-67	41.3
WP_013048497.1\|1139606_1139825_-\|tail	phage tail protein gpX	A0A067ZJB1	Vibrio_phage	4.1e-10	43.1
WP_013048498.1\|1139817_1142250_-\|tail	phage tail tape measure protein	A0A097I4X9	Vibrio_phage	6.3e-123	42.5
WP_013048499.1\|1142400_1142682_-\|tail	phage tail assembly protein	A0A0C5AEP1	Bacteriophage	4.4e-12	46.2
WP_013048500.1\|1142695_1143220_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	4.2e-56	59.8
WP_013048501.1\|1143232_1144681_-\|tail	phage tail sheath family protein	A0A059WKP9	Vibrio_phage	4.2e-183	61.6
WP_013048502.1\|1144670_1144955_-	hypothetical protein	NA	NA	NA	NA
WP_013048503.1\|1144955_1145399_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	8.1e-29	43.6
WP_013048504.1\|1145399_1145954_-\|tail	phage tail protein	A0A067ZG41	Vibrio_phage	5.8e-24	38.4
WP_013048505.1\|1145950_1146277_-	hypothetical protein	NA	NA	NA	NA
WP_013048506.1\|1146280_1146616_-	DUF2190 family protein	NA	NA	NA	NA
WP_013048507.1\|1146631_1148557_-\|head,protease	HK97 family phage prohead protease	A0A1B0YZU0	Pseudomonas_phage	8.6e-67	43.0
WP_013048508.1\|1148537_1150022_-\|portal	phage portal protein	G8CLA3	Synechococcus_phage	1.0e-62	31.3
WP_013048509.1\|1150015_1150204_-	hypothetical protein	NA	NA	NA	NA
WP_169302807.1\|1150222_1152037_-\|terminase	terminase	A0A2K9V301	Faecalibacterium_phage	3.0e-130	43.8
WP_013048511.1\|1152080_1152605_-	hypothetical protein	NA	NA	NA	NA
WP_169302808.1\|1152963_1153611_-\|integrase	tyrosine-type recombinase/integrase	H0USV4	Bacillus_phage	1.0e-27	44.5
WP_169302809.1\|1154150_1154579_-	hypothetical protein	NA	NA	NA	NA
WP_013048516.1\|1154836_1155028_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_041459355.1\|1155033_1155252_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013048517.1\|1155244_1156177_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	5.5e-19	34.4
WP_013048518.1\|1156173_1157043_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013048519.1\|1157072_1157510_-	dUTP diphosphatase	A0A0A0YRI4	Escherichia_phage	9.8e-27	48.1
WP_013048520.1\|1157599_1157959_-	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_013048521.1\|1157969_1158113_-	hypothetical protein	NA	NA	NA	NA
WP_013048522.1\|1158216_1158990_-	phage antirepressor Ant	A0A2H4JCR9	uncultured_Caudovirales_phage	5.5e-73	56.6
WP_169302810.1\|1158986_1159142_-	hypothetical protein	NA	NA	NA	NA
WP_013048524.1\|1159138_1159339_-	hypothetical protein	NA	NA	NA	NA
WP_013048525.1\|1159341_1159566_-	hypothetical protein	NA	NA	NA	NA
WP_013048526.1\|1159555_1159831_-	hypothetical protein	NA	NA	NA	NA
WP_013048527.1\|1160230_1160491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013048528.1\|1160641_1161322_+	LexA family transcriptional regulator	NA	NA	NA	NA
WP_013048529.1\|1161393_1162812_+	PH domain-containing protein	NA	NA	NA	NA
WP_013048530.1\|1162872_1163148_+	S24 family peptidase	NA	NA	NA	NA
WP_013048531.1\|1163177_1163717_+	hypothetical protein	NA	NA	NA	NA
WP_148211406.1\|1163841_1164873_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_013048533.1\|1164992_1166684_+	AAA family ATPase	NA	NA	NA	NA
WP_013048534.1\|1166792_1167695_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	1.2e-10	22.9
WP_013048535.1\|1167785_1168211_-	hypothetical protein	NA	NA	NA	NA
WP_013048536.1\|1168220_1168652_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	3.5e-16	37.2
WP_013048537.1\|1168836_1169964_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	4.6e-68	37.8
WP_013048538.1\|1170314_1170497_-	ferredoxin	NA	NA	NA	NA
1170131:1170153	attR	NA	NA	NA	NA
WP_013048539.1\|1170576_1171368_-	pur operon repressor	NA	NA	NA	NA
WP_013048540.1\|1171364_1172240_-	hypothetical protein	NA	NA	NA	NA
WP_013048541.1\|1172323_1172563_-	hypothetical protein	NA	NA	NA	NA
WP_013048542.1\|1172659_1174600_-	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	1.2e-20	30.3
WP_052292810.1\|1174592_1176026_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_013048544.1\|1176224_1176812_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_013048545.1\|1176837_1177410_-	hypothetical protein	NA	NA	NA	NA
WP_013048546.1\|1177451_1178564_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_013048547.1\|1178560_1180372_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	7.5e-20	42.2
WP_013048548.1\|1180722_1181442_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D8KNF0	Synechococcus_phage	1.1e-43	41.0
WP_013048549.1\|1181442_1181694_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013048550.1\|1181696_1182404_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_041459608.1\|1182403_1184557_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.3e-139	37.9
WP_013048552.1\|1184557_1185931_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	2.1e-54	32.8
WP_013048553.1\|1185914_1186907_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	1.1e-65	44.7
WP_013048554.1\|1186909_1187515_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.5e-17	28.7
WP_013048555.1\|1187501_1189031_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	3.6e-39	48.1
WP_013048556.1\|1189043_1190315_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_013048557.1\|1190326_1190872_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-25	42.6

DBSCAN-SWA_3

1828396 : 1836521

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013049155.1\|1828396_1829179_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-15	33.5
WP_013049156.1\|1829175_1830003_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-14	31.1
WP_013049157.1\|1829947_1831171_-	MFS transporter	NA	NA	NA	NA
WP_013049158.1\|1831203_1831800_-	ribonuclease HI family protein	NA	NA	NA	NA
WP_013049159.1\|1831792_1832668_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	3.7e-33	36.8
WP_041459390.1\|1832769_1833045_+	hypothetical protein	NA	NA	NA	NA
WP_013049160.1\|1833029_1834286_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.9e-99	50.0
WP_013049161.1\|1834327_1835521_-	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	5.7e-53	34.0
WP_041459391.1\|1835552_1836521_-	L-threonine 3-dehydrogenase	A0A1E1ESK0	Acanthamoeba_castellanii_mimivirus	7.3e-06	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection