CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017153	Yersinia pestis D106004 plasmid pCD1, complete sequence	0 crisprs	NA	0	0	2	0
NC_017156	Yersinia pestis D106004 plasmid pPCY1, complete sequence	0 crisprs	NA	0	0	0	0
NC_017155	Yersinia pestis D106004 plasmid pMT1, complete sequence	0 crisprs	NA	0	0	1	0
NC_017154	Yersinia pestis D106004, complete sequence	7 crisprs	DEDDh,DinG,cas3,cas6f,cas7f,cas8f,cas3f,cas1,csa3	4	9	13	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017154_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_1

1658221-1658342

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017154_1

>merge|NC_017154|1|1658221-1658342|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NC_017154|1|1|1658221-1658342|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002221095.1\|1644403_1646458_+\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NC_017154.1\|WP_002213049.1\|1650345_1650624_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NC_017154.1\|WP_002213052.1\|1649061_1650252_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NC_017154.1\|WP_002213032.1\|1659694_1660978_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NC_017154.1\|WP_002213028.1\|1661732_1662971_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NC_017154.1\|WP_002213056.1\|1648158_1648575_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NC_017154.1\|WP_002213030.1\|1660979_1661717_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NC_017154.1\|WP_002213060.1\|1646518_1646983_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NC_017154.1\|WP_002213026.1\|1662963_1663683_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NC_017154.1\|WP_002213054.1\|1648683_1649001_-\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NC_017154.1\|WP_002213046.1\|1650675_1651005_-\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NC_017154.1\|WP_002213058.1\|1647161_1647842_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NC_017154.1\|WP_002213024.1\|1664439_1665228_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_017154.1\|WP_002213025.1\|1663684_1664437_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NC_017154.1\|WP_002213039.1\|1654650_1657068_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NC_017154.1\|WP_002213038.1\|1657221_1657968_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NC_017154.1\|WP_002213034.1\|1659180_1659705_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NC_017154.1\|WP_002228570.1\|1665314_1665755_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NC_017154.1\|WP_002213036.1\|1658698_1658917_+\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002213017.1\|1665792_1666041_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002221095.1\|1644403_1646458_+\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NC_017154.1\|WP_002213049.1\|1650345_1650624_+\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NC_017154.1\|WP_002213052.1\|1649061_1650252_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NC_017154.1\|WP_002213032.1\|1659694_1660978_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.93328e-136
NC_017154.1\|WP_002213056.1\|1648158_1648575_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NC_017154.1\|WP_002213030.1\|1660979_1661717_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NC_017154.1\|WP_002213060.1\|1646518_1646983_-\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NC_017154.1\|WP_002213026.1\|1662963_1663683_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NC_017154.1\|WP_002213054.1\|1648683_1649001_-\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NC_017154.1\|WP_002213046.1\|1650675_1651005_-\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NC_017154.1\|WP_002213058.1\|1647161_1647842_-\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NC_017154.1\|WP_002213024.1\|1664439_1665228_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NC_017154.1\|WP_002213025.1\|1663684_1664437_+\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NC_017154.1\|WP_002213039.1\|1654650_1657068_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NC_017154.1\|WP_002213038.1\|1657221_1657968_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NC_017154.1\|WP_002213034.1\|1659180_1659705_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NC_017154.1\|WP_002228570.1\|1665314_1665755_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NC_017154.1\|WP_002213028.1\|1661732_1662971_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141
NC_017154.1\|WP_002213017.1\|1665792_1666041_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09

>NC_017154.1|WP_002213038.1|1657221_1657968_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NC_017154.1|WP_002213039.1|1654650_1657068_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NC_017154.1|WP_002213046.1|1650675_1651005_-|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NC_017154.1|WP_002213049.1|1650345_1650624_+|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NC_017154.1|WP_002213052.1|1649061_1650252_-|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NC_017154.1|WP_002213054.1|1648683_1649001_-|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NC_017154.1|WP_002213056.1|1648158_1648575_+|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NC_017154.1|WP_002213058.1|1647161_1647842_-|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NC_017154.1|WP_002213060.1|1646518_1646983_-|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NC_017154.1|WP_002221095.1|1644403_1646458_+|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NC_017154.1|WP_002213036.1|1658698_1658917_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NC_017154.1|WP_002213034.1|1659180_1659705_+|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NC_017154.1|WP_002213032.1|1659694_1660978_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NC_017154.1|WP_002213030.1|1660979_1661717_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NC_017154.1|WP_002213028.1|1661732_1662971_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NC_017154.1|WP_002213026.1|1662963_1663683_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NC_017154.1|WP_002213025.1|1663684_1664437_+|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NC_017154.1|WP_002213024.1|1664439_1665228_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NC_017154.1|WP_002228570.1|1665314_1665755_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NC_017154.1|WP_002213017.1|1665792_1666041_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_2

1788306-1788513

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

3 spacers

DEDDh

The CRISPR arrays of NC_017154_2

>merge|NC_017154|2|1788306-1788513|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAATGTTCGACGATTTATTTTATTTGTATTTCAGGTTCACTGCCGCACAGGCAGCTTAGAAAATTTATTAAAGATGCTGACAAAAAGAACTTAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTCAACGCTTCACTCCCTGCGCGGGGTATAACGTTCACTGCCGCACAGGCAGCCCAATAA

>NC_017154|2|1|1788306-1788453|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NC_017154|2|2|1788306-1788513|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

>NC_017154|2|1|1788306-1788513|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002216393.1\|1800011_1800752_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NC_017154.1\|WP_002211902.1\|1786419_1787811_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_017154.1\|WP_002216312.1\|1784868_1785960_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NC_017154.1\|WP_002211896.1\|1778784_1779684_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_017154.1\|WP_157131899.1\|1781371_1781662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NC_017154.1\|WP_002211895.1\|1777449_1778781_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_017154.1\|WP_002211898.1\|1780389_1781217_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_017154.1\|WP_002211916.1\|1800799_1801642_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_017154.1\|WP_002211904.1\|1788547_1789978_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_017154.1\|WP_002211912.1\|1799161_1799584_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NC_017154.1\|WP_002216388.1\|1793671_1796824_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NC_017154.1\|WP_002231208.1\|1779966_1780014_-\|his-operon-leader-peptide	unknown	unknown	unknown
NC_017154.1\|WP_002211917.1\|1801673_1802951_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NC_017154.1\|WP_002211911.1\|1797848_1799153_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_017154.1\|WP_002211900.1\|1782050_1783046_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_017154.1\|WP_002209743.1\|1792500_1793709_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NC_017154.1\|WP_002211919.1\|1803247_1804393_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NC_017154.1\|WP_002216311.1\|1783689_1784583_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_017154.1\|WP_002216310.1\|1783042_1783732_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_017154.1\|WP_002211905.1\|1790270_1791380_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002216393.1\|1800011_1800752_+\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NC_017154.1\|WP_002211902.1\|1786419_1787811_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.72025e-45
NC_017154.1\|WP_002216312.1\|1784868_1785960_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NC_017154.1\|WP_002211896.1\|1778784_1779684_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NC_017154.1\|WP_157131899.1\|1781371_1781662_-\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NC_017154.1\|WP_002211895.1\|1777449_1778781_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_017154.1\|WP_002211898.1\|1780389_1781217_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NC_017154.1\|WP_002211916.1\|1800799_1801642_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.96038e-107
NC_017154.1\|WP_002211904.1\|1788547_1789978_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_017154.1\|WP_002211912.1\|1799161_1799584_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.0494e-57
NC_017154.1\|WP_002216388.1\|1793671_1796824_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.47456e-126
NC_017154.1\|WP_002211917.1\|1801673_1802951_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NC_017154.1\|WP_002211911.1\|1797848_1799153_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NC_017154.1\|WP_002211900.1\|1782050_1783046_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NC_017154.1\|WP_002209743.1\|1792500_1793709_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NC_017154.1\|WP_002211919.1\|1803247_1804393_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NC_017154.1\|WP_002216311.1\|1783689_1784583_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.90601e-98
NC_017154.1\|WP_002216310.1\|1783042_1783732_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.76633e-90
NC_017154.1\|WP_002211905.1\|1790270_1791380_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89947e-61

>NC_017154.1|WP_002211902.1|1786419_1787811_+|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPDISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NC_017154.1|WP_002216312.1|1784868_1785960_+|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NC_017154.1|WP_002216311.1|1783689_1784583_-|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDISPLGERQSAAKHGCRKHYCRKHCYRSAAYMISISCAISPSHYIRAKF
>NC_017154.1|WP_002216310.1|1783042_1783732_-|sugar-ABC-transporter-ATP-binding-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLAHLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NC_017154.1|WP_002211900.1|1782050_1783046_-|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NC_017154.1|WP_157131899.1|1781371_1781662_-|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NC_017154.1|WP_002211898.1|1780389_1781217_+|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NC_017154.1|WP_002231208.1|1779966_1780014_-|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NC_017154.1|WP_002211896.1|1778784_1779684_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_017154.1|WP_002211895.1|1777449_1778781_-|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NC_017154.1|WP_002211904.1|1788547_1789978_-|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NC_017154.1|WP_002211905.1|1790270_1791380_+|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDDIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NC_017154.1|WP_002209743.1|1792500_1793709_+|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NC_017154.1|WP_002216388.1|1793671_1796824_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFIDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLTHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNREVSAGQDVRGVGSLLSLSIILCNCHRIKGDRSGGHRTR
>NC_017154.1|WP_002211911.1|1797848_1799153_+|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NC_017154.1|WP_002211912.1|1799161_1799584_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGHALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NC_017154.1|WP_002216393.1|1800011_1800752_+|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NC_017154.1|WP_002211916.1|1800799_1801642_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSYVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NC_017154.1|WP_002211917.1|1801673_1802951_+|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NC_017154.1|WP_002211919.1|1803247_1804393_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISASTDYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_3

2768809-2769256

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

7 spacers

cas1,cas3f,cas8f,cas7f,cas6f

The CRISPR arrays of NC_017154_3

>merge|NC_017154|3|2768809-2769256|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACATATTCTCGAGCGATAGCAATAGCCATTCCACTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGGTCAAACAAATTTAGGCGACGATTTAACATTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAAGAATTTGGGATTAAAGTTACCCATCAGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|3|3|2768809-2769256|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|3|2|2768809-2769256|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|3|2|2768869-2769256|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002210192.1\|2769593_2770838_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NC_017154.1\|WP_002211861.1\|2755505_2756432_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_017154.1\|WP_002216551.1\|2756546_2756756_-\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002210198.1\|2776981_2777857_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_017154.1\|WP_002210200.1\|2779523_2780564_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NC_017154.1\|WP_002210194.1\|2772751_2773867_-\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002210199.1\|2777965_2779252_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_017154.1\|WP_002211866.1\|2759895_2760450_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NC_017154.1\|WP_002213840.1\|2773989_2774928_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NC_017154.1\|WP_002211865.1\|2758798_2759818_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NC_017154.1\|WP_002211863.1\|2756879_2758238_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_017154.1\|WP_002210201.1\|2780580_2781969_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NC_017154.1\|WP_002221142.1\|2764184_2767472_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_017154.1\|WP_002210193.1\|2771438_2772713_-\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002210197.1\|2776156_2776981_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_017154.1\|WP_002210191.1\|2767468_2768449_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_017154.1\|WP_002211867.1\|2760460_2761465_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_017154.1\|WP_002210196.1\|2774954_2776010_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NC_017154.1\|WP_002222491.1\|2762430_2763777_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NC_017154.1\|WP_002211864.1\|2758284_2758788_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002210192.1\|2769593_2770838_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NC_017154.1\|WP_002211861.1\|2755505_2756432_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.26573e-51
NC_017154.1\|WP_002210198.1\|2776981_2777857_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.26211e-58
NC_017154.1\|WP_002210200.1\|2779523_2780564_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NC_017154.1\|WP_002211866.1\|2759895_2760450_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NC_017154.1\|WP_002213840.1\|2773989_2774928_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NC_017154.1\|WP_002211865.1\|2758798_2759818_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NC_017154.1\|WP_002211863.1\|2756879_2758238_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50877e-50
NC_017154.1\|WP_002210201.1\|2780580_2781969_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_017154.1\|WP_002221142.1\|2764184_2767472_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_017154.1\|WP_002210197.1\|2776156_2776981_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NC_017154.1\|WP_002210199.1\|2777965_2779252_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NC_017154.1\|WP_002210191.1\|2767468_2768449_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_017154.1\|WP_002211867.1\|2760460_2761465_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_017154.1\|WP_002210196.1\|2774954_2776010_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NC_017154.1\|WP_002222491.1\|2762430_2763777_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NC_017154.1\|WP_002211864.1\|2758284_2758788_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90

>NC_017154.1|WP_002210191.1|2767468_2768449_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NC_017154.1|WP_002221142.1|2764184_2767472_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETTLMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NC_017154.1|WP_002222491.1|2762430_2763777_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NC_017154.1|WP_002211867.1|2760460_2761465_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NC_017154.1|WP_002211866.1|2759895_2760450_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NC_017154.1|WP_002211865.1|2758798_2759818_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NC_017154.1|WP_002211864.1|2758284_2758788_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NC_017154.1|WP_002211863.1|2756879_2758238_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NC_017154.1|WP_002216551.1|2756546_2756756_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NC_017154.1|WP_002211861.1|2755505_2756432_-|LysR-family-transcriptional-regulator
MRKLPSLRMLRVFEEACHTLSFSKAAEALFMTQSAASRQIKQLENFLGKSLFIRGHRGLELTQDEMTMLPIVRQSLDLLEEGVKHVQLSNPLQHLRLQVAPTFATRWLAPRLVTLLQRNSQLQIALISEIRQKYCDFDSAIRFGDIRRDLSNGHLLCYEQLCLVASPLVMQQGRFPPLTALPQLHILNGDSRLTNWQQWLDAAQITVAAGHNALEFSTQDQVISACTTGAGYAVLDILMISHELDNGLLRQVLPLTVTSTHGYWLEIPQDKGHSPRVIIFQEWLQRELKRDIAKRYSKGEAKPLPAVL
>NC_017154.1|WP_002210192.1|2769593_2770838_+|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NC_017154.1|WP_002210193.1|2771438_2772713_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NC_017154.1|WP_002210194.1|2772751_2773867_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NC_017154.1|WP_002213840.1|2773989_2774928_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NC_017154.1|WP_002210196.1|2774954_2776010_-|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NC_017154.1|WP_002210197.1|2776156_2776981_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NC_017154.1|WP_002210198.1|2776981_2777857_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NC_017154.1|WP_002210199.1|2777965_2779252_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NC_017154.1|WP_002210200.1|2779523_2780564_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NC_017154.1|WP_002210201.1|2780580_2781969_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_4

3114389-3114658

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

4 spacers

The CRISPR arrays of NC_017154_4

>merge|NC_017154|4|3114389-3114658|CRISPRCasFinder,CRT,PILER-CR
TCTATAAGCTGCCTGTGCGGCAGTGAACTCTGTACGCATACCGCCATCTTGCATCAGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACAGCAAAAATCTTAATTACATCTGATGATTTCGGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTACGGCACGGCGAAAGATTCGGTTCTTGTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTTCTGGATAGGACAAATAGGATGATTGTATCAGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|4|4|3114389-3114658|CRISPRCasFinder
TCTATAAGCTGCCTGTGCGGCAGTGAAC	TCTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTACGGCACGGCGAAAGATTCGGTTCTTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGGATAGGACAAATAGGATGATTGTATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|4|3|3114389-3114658|CRT
TCTATAAGCTGCCTGTGCGGCAGTGAAC	TCTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTACGGCACGGCGAAAGATTCGGTTCTTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGGATAGGACAAATAGGATGATTGTATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_017154|4|3|3114449-3114658|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTACGGCACGGCGAAAGATTCGGTTCTTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGGATAGGACAAATAGGATGATTGTATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002214718.1\|3115018_3115567_+\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008
NC_017154.1\|WP_002359655.1\|3109738_3111664_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NC_017154.1\|WP_002209743.1\|3122920_3124129_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NC_017154.1\|WP_002210300.1\|3107404_3108334_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NC_017154.1\|WP_002210304.1\|3101609_3103580_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NC_017154.1\|WP_002223323.1\|3105808_3107356_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_017154.1\|WP_002210302.1\|3104768_3105797_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_017154.1\|WP_002210296.1\|3113530_3114385_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_017154.1\|WP_002210293.1\|3124150_3124405_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NC_017154.1\|WP_002216059.1\|3125383_3126418_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_017154.1\|WP_002214717.1\|3122008_3122887_+\|transglycosylase	unknown	unknown	gnl\|CDD\|273954
NC_017154.1\|WP_002210294.1\|3115973_3121952_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NC_017154.1\|WP_002265141.1\|3126683_3128822_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NC_017154.1\|WP_002210291.1\|3124573_3125017_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NC_017154.1\|WP_002210303.1\|3103611_3104745_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_017154.1\|WP_002210288.1\|3129004_3130207_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NC_017154.1\|WP_002210287.1\|3130628_3131084_+\|DUF412-domain-containing-protein	unknown	unknown	gnl\|CDD\|179338
NC_017154.1\|WP_002227877.1\|3100536_3101457_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NC_017154.1\|WP_002210306.1\|3099711_3100527_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NC_017154.1\|WP_002210297.1\|3111698_3113225_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002214718.1\|3115018_3115567_+\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	2.91652e-69
NC_017154.1\|WP_002359655.1\|3109738_3111664_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NC_017154.1\|WP_002209743.1\|3122920_3124129_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NC_017154.1\|WP_002210300.1\|3107404_3108334_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NC_017154.1\|WP_002210304.1\|3101609_3103580_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NC_017154.1\|WP_002223323.1\|3105808_3107356_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_017154.1\|WP_002210302.1\|3104768_3105797_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NC_017154.1\|WP_002210296.1\|3113530_3114385_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NC_017154.1\|WP_002210293.1\|3124150_3124405_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.4281e-27
NC_017154.1\|WP_002216059.1\|3125383_3126418_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.95185e-89
NC_017154.1\|WP_002214717.1\|3122008_3122887_+\|transglycosylase	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.09445e-118
NC_017154.1\|WP_002210294.1\|3115973_3121952_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NC_017154.1\|WP_002265141.1\|3126683_3128822_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NC_017154.1\|WP_002210291.1\|3124573_3125017_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.55185e-43
NC_017154.1\|WP_002210303.1\|3103611_3104745_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.07432e-69
NC_017154.1\|WP_002210288.1\|3129004_3130207_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NC_017154.1\|WP_002210287.1\|3130628_3131084_+\|DUF412-domain-containing-protein	gnl\|CDD\|179338	PRK01816, PRK01816, hypothetical protein; Provisional.	1.1254e-94
NC_017154.1\|WP_002227877.1\|3100536_3101457_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	8.43662e-165
NC_017154.1\|WP_002210306.1\|3099711_3100527_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	3.14642e-169
NC_017154.1\|WP_002210297.1\|3111698_3113225_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0

>NC_017154.1|WP_002210296.1|3113530_3114385_+|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NC_017154.1|WP_002210297.1|3111698_3113225_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSVTSGSPRAQAIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTEAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NC_017154.1|WP_002359655.1|3109738_3111664_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLAGYRTAWQGDIIEAKAAWCDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMGSFCTESRHRNHESGQLNGPLICVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NC_017154.1|WP_002210300.1|3107404_3108334_-|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NC_017154.1|WP_002223323.1|3105808_3107356_-|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTLEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMTINHNALNAA
>NC_017154.1|WP_002210302.1|3104768_3105797_-|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NC_017154.1|WP_002210303.1|3103611_3104745_-|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLHATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NC_017154.1|WP_002210304.1|3101609_3103580_-|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARSLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NC_017154.1|WP_002227877.1|3100536_3101457_-|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NC_017154.1|WP_002210306.1|3099711_3100527_-|5-deoxy-glucuronate-isomerase
MSRLLSRRQAPDERGLTQRITPAQAGWGYVGFEVYELNEGQPLTLTAVPDERCLVLIAGRASISTPSAQFPNIGDRMSPFERHKPWAVYVTPGEAVQVQAITPLELAVCSAPGKGTYPTRLISPEDIGAEARGKGHNQRYVHNILPEDHPADSLLVVEVYTNEGASSSYPSHKHDTDNPPHETYLEETYYHRLNPEQGFCMQRVYTDDRSLDECMAVYNREVVMVPRGYHPVATMAGYDSYYLNVMAGPVRKWIFSWENDHVWINHNYPIT
>NC_017154.1|WP_002214718.1|3115018_3115567_+|DUF1440-domain-containing-protein
MSEKRVNLQVIAWATIIGGFVSSLVKSGTEVNMPPRVVGEISPPAANIDAWLGWLGINSHSMDYVYQGVTISGTVVLYHWLFSFVFAFVYVLLSAYWPKVRLWYSAAYGLSITVAIHGVLIPALGFRHPAYLAGETGWLWNLNGYELWSEIIGHLCWSASLEICLVAVLAFFSKPIKGIWAN
>NC_017154.1|WP_002210294.1|3115973_3121952_+|alpha-2-macroglobulin-family-protein
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDTEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLQISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NC_017154.1|WP_002214717.1|3122008_3122887_+|transglycosylase
MRIPTLMATKRLLQNILMALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTRDCKQYCVIACF
>NC_017154.1|WP_002209743.1|3122920_3124129_+|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NC_017154.1|WP_002210293.1|3124150_3124405_-|PTS-sugar-transporter-subunit-IIB
MKITVVCGNGLGTSLMMEISIKSILKELAVSAEVDHVDLGSAKGTPSDIFIGTKDIAEQLVAQAVGGKIVALDNMIDKKARACP
>NC_017154.1|WP_002210291.1|3124573_3125017_-|PTS-sugar-transporter-subunit-IIA
MLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY
>NC_017154.1|WP_002216059.1|3125383_3126418_+|LacI-family-DNA-binding-transcriptional-regulator
MEKIRKRRNTGRVTLQEVADYAGVGSMTVSRALRTPEQVSDKLREKIEQAVEKLGYIPNRAAGALASGHSDTVAVLIPSLTDKASSRFMQALQQILNKNEFQLLLGCHEYNQRKEAEILMTLLQSHPAAVVIFGSQLADKTYQILERTNIPIVNVVGSYFKGAKITLEAAFFESAYELTRHLLERGYQHIGYLGAHRDNQLQRQQLNGWHKSMLEHYKNADQTVTTPDAASLQFGRYALTEILLRQPELDAVICSHEDIALGVLFECQRRLLKIPSGIAVACLDGSESCDQTHPTLTSMRIDYKKMGKEAGKMLIDMLNEDDAGVKSVPLSQSFNYKFEPRQST
>NC_017154.1|WP_002265141.1|3126683_3128822_-|phosphate-acetyltransferase
MLIPTGTSVGLTSVSLGVIRSMEQKGVSLSVFKPIAQPRAGNDAPDQTTTIIRANSSITAAEPLNMNYVETLLSSNQQDVLMEEIVARYHENTKDAEVVLVEGLVPTRKHQFANALNYEIAKTLNAEIVFVIALGNDSPDQLKERIELARSSFGGSKNKNITGVIINKLNAPVDEQGRTRPDLSEIFDDSTKASVANIDPSQLFANSPIPVLGCVPWSFELIATRAIDMAKHLNARIINEGDIKTRRVKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVSACLAAMNGVEIGAILLTGGYAIDDRINNLCERAFQTGLPVFMVDTNTWQTSLSLQSFNLEVPADDHERVEKLQNYVASHISSEWIDSLTAASERPRRLSPPAFRYELTELARKAGKRIVLPEGDEPRTIKAASICAERGIATCVLLGNPEEIQRVATSQGVELGKGVEIIDPVAVREQYVPRLVELRKSKGMTEVVAREQLEDNVVLGTLMLEKGEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPDQVLVYGDCAINPDPTAEQLSEIAIQSADSAAAFGIEPRVAMISYSTGNSGAGSDVEKVREATRLAQEKRPDLIIDGPLQYDAAIMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTVALTAIQSAQADSAAS
>NC_017154.1|WP_002210288.1|3129004_3130207_-|acetate-kinase
MSSKLVLVLNCGSSSLKFAIIDATNGEEHISGLAECFHLPEARIKWKVDGGKQEAALGAGAAHSEALNFIVNTILAQKPALSAQLTAIGHRIVHGGEKFTSSVIVTEDVIQGIKDSIPFAPLHNPAHLIGIAEALKSFPNLADKNVAVFDTAFHQTMPEESYLYALPYSLYKDHGIRRYGAHGTSHFYVSQEAAKILNKPLEELNVITCHLGNGGSVTAVRNGKCVDTSMGLTPLEGLVMGTRSGDLDPAIIFHLHDAMGMSVDQINTLLTKESGLLGLTEVTSDCRYVEDNYATKADAKRAMDVFCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELTLDKLGLLGFEIDHERNMAARFGKSGTITKDSSRLALVIPTNEELVIAQDAARLTA
>NC_017154.1|WP_002210287.1|3130628_3131084_+|DUF412-domain-containing-protein
MTIKPSDSVSWFQVLQRGQHYMKTWPADKRLAPVFPENRVTVVTRFGIRFMPPLAIFTLTWQIALGGQLGPAIATALFACGLPLQGLWWLGKRAITPLPPTLLQWFHEVRHKLFEAGQAVAPIEPIPTYQSLADLLKRAFKQLDKTFLDDL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_5

3455964-3456111

Orphan

Consensus_repeat	Method
CAAATAGCAAATAGCAAATAGCAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017154_5

>merge|NC_017154|5|3455964-3456111|CRISPRCasFinder
CAGATAACGAATAATAAATAGAAACCCGATAATATTTTTTACTTATTAAGTTAAAACTTAATTAACCAACTTAAGAGTCGCCATATCCAAATAGCAAATAGCAAATAGCAAATAGCAAATAGCAAATAGCAAATAGCAAATAGCAAAT

>NC_017154|5|5|3455964-3456111|CRISPRCasFinder
CAGATAACGAATAATAAATAGAAACC	CGATAATATTTTTTACTTATTAAGTTAAAACTTAATTAACCAACTTAAGAGTCG
CCATATCCAAATAGCAAATAGCAAAT	AGCAAATAGCAAATAG
CAAATAGCAAATAGCAAATAGCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002208595.1\|3465679_3466537_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|366597
NC_017154.1\|WP_002208587.1\|3451178_3452330_-\|LPS-O-antigen-length-regulator	unknown	unknown	gnl\|CDD\|182422
NC_017154.1\|WP_002208586.1\|3449670_3450975_-\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
NC_017154.1\|WP_002215987.1\|3467904_3468843_-\|CDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187562
NC_017154.1\|WP_002208583.1\|3444153_3444393_+\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002208593.1\|3462978_3464322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
NC_017154.1\|WP_002208591.1\|3458252_3459266_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_017154.1\|WP_002208589.1\|3453755_3454499_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NC_017154.1\|WP_002208594.1\|3464395_3465679_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224153
NC_017154.1\|WP_002208590.1\|3454501_3455908_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NC_017154.1\|WP_002208580.1\|3442264_3443074_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226258
NC_017154.1\|WP_002223297.1\|3456143_3457109_-\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NC_017154.1\|WP_002215986.1\|3468835_3468979_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274236
NC_017154.1\|WP_002208596.1\|3466573_3467887_-\|lipopolysaccharide-biosynthesis-protein-RfbH	unknown	unknown	gnl\|CDD\|237960
NC_017154.1\|WP_002208584.1\|3446433_3447648_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NC_017154.1\|WP_002215988.1\|3462254_3462968_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_017154.1\|WP_002208588.1\|3452377_3453751_-\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
NC_017154.1\|WP_002208585.1\|3447882_3449574_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NC_017154.1\|WP_002208592.1\|3460732_3461875_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_017154.1\|WP_002208581.1\|3443337_3443817_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002208595.1\|3465679_3466537_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	1.2475e-38
NC_017154.1\|WP_002208587.1\|3451178_3452330_-\|LPS-O-antigen-length-regulator	gnl\|CDD\|182422	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.	0
NC_017154.1\|WP_002208586.1\|3449670_3450975_-\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
NC_017154.1\|WP_002215987.1\|3467904_3468843_-\|CDP-glucose-4,6-dehydratase	gnl\|CDD\|187562	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_017154.1\|WP_002208593.1\|3462978_3464322_-\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	0.00163004
NC_017154.1\|WP_002208591.1\|3458252_3459266_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	9.33052e-75
NC_017154.1\|WP_002208589.1\|3453755_3454499_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.27861e-86
NC_017154.1\|WP_002208594.1\|3464395_3465679_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224153	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].	6.98589e-109
NC_017154.1\|WP_002208590.1\|3454501_3455908_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_017154.1\|WP_002208580.1\|3442264_3443074_+\|hypothetical-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	4.11048e-109
NC_017154.1\|WP_002223297.1\|3456143_3457109_-\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.12293e-179
NC_017154.1\|WP_002215986.1\|3468835_3468979_-\|hypothetical-protein	gnl\|CDD\|274236	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.40787e-23
NC_017154.1\|WP_002208596.1\|3466573_3467887_-\|lipopolysaccharide-biosynthesis-protein-RfbH	gnl\|CDD\|237960	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional.	0
NC_017154.1\|WP_002208584.1\|3446433_3447648_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.0568e-112
NC_017154.1\|WP_002215988.1\|3462254_3462968_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.59337e-10
NC_017154.1\|WP_002208588.1\|3452377_3453751_-\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_017154.1\|WP_002208585.1\|3447882_3449574_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NC_017154.1\|WP_002208592.1\|3460732_3461875_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.68475e-06
NC_017154.1\|WP_002208581.1\|3443337_3443817_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	1.6143e-109

>NC_017154.1|WP_002208590.1|3454501_3455908_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MLLPVIMAGGAGSRLWPLSRALYPKQFLALTSDLTMLQETLLRLDGLPHLAPLVICNEEHRFIIAEQLRQKNLVHSGIVLEPVGRNTAPAIALAALRATMSGDDPLLLVLAADHVIQDKLAFIRAVQRAEPLAEAGKLVTFGIVPKSPETGYGYIRQGKQVVDGAYQVAAFVEKPDLITAERYLASGDYYWNSGMFVFKASRYLQELDLHRPDILAACKQAIAGQHTDLDFIRLNEEAFSSCPDESIDYAVMEKTSDAVVVPLDAQWNDVGCWSALWEINTKDDHGNVIRGDVLIEDTNNSYVYSQNRLIATVGINDLVIVETKDAILVAHKDKVQNVKGIVGQLKLESRCEYLQHREVYRPWGSHDAIAEGVRYHVQHVTVKPGQRIATQIHYHRAEHWIVVSGIAKVHYGKETYLVNENESTYIPVGIAHSIENPGQIPLEIIEVHTGNYISEDDVERIDDLGVGY
>NC_017154.1|WP_002208589.1|3453755_3454499_-|glycosyltransferase
MKISIITATYNSERTISDTLSSLEKQTYLDVEYIIVDGASKDNTLTVISQNSTRVTKIISESDQGIYDALNKGIDLATGDIIGFLHSDDLLAYPGALSDIVETFEKQQCDAVYGDLQYVAKNDLNKVIRCWKSGFFNHEKMKYGWMPPHPTFYMKRDLYIRFGGFDLSYKISADYDSLTRYIINYKIKIAYLPKVIIKMRVGGISNRSLGSMLLKSKEDIQIMKLRGLFWPMSFLCKNLSKLPQFLK
>NC_017154.1|WP_002208588.1|3452377_3453751_-|phosphomannomutase-CpsG
MPKLTCFKAYDIRGRLGDELNEDIAYRIGRAYGEFAKPKKVVVGGDVRLTSESLKLALSQGLQDAGTDVLDIGLSGTEEIYFSTFHLGVDGGIEVTASHNPIDYNGMKLVREGSRPISGDTGLRDIQYLAEQNEFPPVDSEKRGGYKKISIINDYVEHLINYINPSLFKPLKLVVNTGNGAAGHVIDALEKRFSELKIPITLIKIHHEPDGTFPNGIPNPLLPECRQDTTDAVLMHDADMGIAFDGDFDRCFFFNNKGEFIEGYYIVGLLAEAFLQKNAGAKIIHDPRLSWNTIDIVNSSGGTPIMSKTGHAFIKERMREEDAVYGGEMSAHHYFRDFAYCDSGMIPWLLIAELLCVKEKSLEQLVEERMRIYPASGEINSKLTDPTSAIARVRAEYEVKAIAIDETDGISMEFDGWRFNLRSSNTEPVVRLNVESHYNKTLMHHKTAEILSLLRKE
>NC_017154.1|WP_002208587.1|3451178_3452330_-|LPS-O-antigen-length-regulator
MSNKQARSNLDSPIPNNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYSASTPTDARDLLQGSINYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKIERLRYASSIADAAGVKKPVYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTELLNRKLYLDKLNRLEIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFVLVEHFVRERKREEEGLKLSQTKE
>NC_017154.1|WP_002208586.1|3449670_3450975_-|inosine/guanosine-kinase
MKFPGKRKSKHYFPVNARDPLLQSVQAENEVSTSYIVGIDQTLVDIEAKVDEDFITRYGLSQGHSLVIEDDVAERLYQELTHNDLITHEFAGGTIGNTLHNYSVLADDRSVLLGTMCSNIKIGSYAYRYLCNTSSRTDLNYLQAVDGAIGRCFTLITENGERTFAISPGQMNQLRPESIPEEVIAGASALVLTAYLVRCKPGEPMPDATMQAIHYAKKHDVPVVMTLGTKYVIADNPQWWREFLNEHVSILAMNEDEAYELTGLNDPLMASDMALEWVDLVLCTAGPSGLYMAGYTEEAYKRQTQHPLLPGAIAEFNLYEFSRAMRKAHCVDPFRIYSHIAPYMGGPEKIMNTNGAGDGALSAVLHDITANGYHRNNVPNSSKHVRSYLSYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWER
>NC_017154.1|WP_002208585.1|3447882_3449574_+|Kef-family-K(+)-transporter
MHHSTPLITTIVGGLVLAFLFGTLAHRLRISPLVGYLAAGVLAGPFTPGFVADTSLAPELAEIGVILLMFGVGLHFSLKDLLAVKSIAIPGAIAQIAVATLLGMGLSHFLGWDLITGLVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLAMVLTLVLLPAFAGVMGNETTNLNQLFTELAITIGKVIAFITLMIVVGRRLVPWILAKTASTGSRELFTLAVLVLALGIAYGAVELFDVSFALGAFFAGMVLNESELSHRAAQDTLPLRDAFAVLFFVSVGMLFDPMILVNEPLAVIASLAIIIFGKSAIAFALVRLFGHSKRTALTISVSLAQIGEFAFILAGLGISLGLLSGHGRNLVLASAILSIMLNPLLFTLLDRYLAKTETMEDLILEEAVEEEKQIPVDLCNHVLLVGYGRVGSLLGAKLHAEGIPLVVIENSRPRVEALREQGINAVFGNAANADVMALGRLDCARWLLLTIPNGYEAGEIVASARIKRPDLEIIARAHYDDEVVYISDRGANQVVMGEREIANSMLNMLKIETLTEEDKMPVCPI
>NC_017154.1|WP_002208584.1|3446433_3447648_+|MFS-transporter
MTDRSDTGCQQPVNVSVKRTSFSILGAISVSHLLNDMIQSLILAIYPLLQAEFSLSFAQIGLITLTYQLTASLLQPLIGLYTDKHPQPYSLPIGMGFTLSGILLLAVATTFPVVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSVFQVGGNFGSALGPLLAAIIIAPYGKGNVGWFSLAALLAIVVLLQVSKWYKLQQRASYGKVLKISSAKTLPKNKIISTLAILMVLIFSKYFYLTSISSYYTFYLIHKFGVSVQSAQIHLFVFLFAVAAGTIIGGPLGDKIGRKYVIWGSILGVAPFTLALPYASLYWTGILTVFIGVILASAFSAILVYAQELIPGKVGMVSGLFFGFAFGMGGIGAAVLGYVADLTSIELVYQICAFLPLLGIFTALLPNLDDK
>NC_017154.1|WP_002208583.1|3444153_3444393_+|hypothetical-protein
MGYDAHKNDLNIKADLIALKYVVQTLVAVANSAHDNRLNQALDILIHEFESNANKNNDNQSIANAIANYLPDEPVIELV
>NC_017154.1|WP_002208581.1|3443337_3443817_+|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVVLLEKQKVPFTLHPYHHDAAETHFGDEAVKKLGLNADQVYKTLLVALNNDAKNLAVAVTPVATQLDLKKVARALGAKKAEMADPQLAQRTTGYLIGGISPLGQKKRLPTVIDSQAQEFVTIFVSGGKRGLDIELAAVDLCRLLQGVFADIAKRD
>NC_017154.1|WP_002208580.1|3442264_3443074_+|hypothetical-protein
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLNQADALIVEADITDATSSFGHSTVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQVALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELEGAEMQLDLLKTLPDNGISLLHDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQLAPGRYVVAVGALHLYGEGNLPELLRADNQ
>NC_017154.1|WP_002223297.1|3456143_3457109_-|GDP-L-fucose-synthase
MDKKRVFIAGHRGMVGSAIVRQLENRNDIELIIRDRTELDLMSQSAVQKFFATEKIDEIYLAAAKVGGIQANNNYPAEFIYQNLMIECNIIHAAHLAGIQKLLFLGSSCIYPKLAAQPMTEEALLTGVLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGENDNFHPENSHVIPALLRRFHEAKIRNDKEMVVWGTGKPMREFLHVDDMAAASVHVMELSDQIYQTNTQPMLSHINVGTGVDCTIRELAETMAKVVGFTGNLVFDSTKPDGTPRKLMDVSRLAKLGWCYQISLEVGLTMTYQWFLAHQNNFRK
>NC_017154.1|WP_002208591.1|3458252_3459266_-|glycosyltransferase-family-4-protein
MKIIYDGIINSLQNMGGVTVYFSELVSRLPATDFYWYSYADEISGFGVGNVKIKSRLLERYRNFSLDTINYNSLSVFHSSYYRLPDFDIPIVTTVHDFTYEKFVNGPAKWVHSWQKNRAVNNSDLIICVSENTAKDLQMYCSVPSNKIRVIYNGVSDKYHYIKGVKITTNKVIFVGARGGYKNFDIAVKAISKTPHLELSVVGGGAFTSKELSLLNHYLPGRYHGLGRLSDEALNEAYNSAYALLYPSSYEGFGIPILEAMSAGCPVISVNVSSIPEVAGDAAILVQKPTIDELVDGLLAVESERSKLIGYGMKQAAKFSWDKCYQETLDVYKELNK
>NC_017154.1|WP_002208592.1|3460732_3461875_-|glycosyltransferase
MILRKFFIICDTVYPDDSGGRKLSLGRIFEAKESGFKVSVLHYNYTNSDVSIARQFFLEHNIDYFYYIPAFSHKKSNLVRCANYISSVIKLTPEPYYYIMKDYGFKKFVLDNFEMSKNSTLSIESILLSGLLPWFNTFEGSIELVFHNVESDFYRQLSISSRSIIYKIFFFIESMKLSAIEKYLFNIKDENIYFVFLSEKDLEKYRLIFPEFQADIFINKNNLFIKEKIKRSVNFNKPFFLFPGGLNFPPNRYSLNWFLAAMSKRVSSLGVDILVTGSFNDDIKSQFSQYSCVKLVGYVSDIQLRELQSSCIAVISPIITGGGVKIKNIEAIKLKIPLIATKFSCEGIDERGANIYITDDEPGSFYITMKSVLNKTMSYK
>NC_017154.1|WP_002215988.1|3462254_3462968_-|glycosyltransferase-family-2-protein
MKSNIIIDNSNSDDVLLTIAIPTYKRFGLLKETLKSVFSLEFNIPVEVIVVDNDPEHPELVLSEMAEFERYDFIYYKNIENYGMFGNWNQCLNLGRGKLITILHDDDLLCANFPRELERFLKEHGCHDDIPLIGFGHHLLDQRKSEDKVNKNILYKISKNIFNIYRKYLIKPKVVSITLNEIFWGNIFSGTLGVVMDRNKALSISGFDERNYPVSDYDFWIRWIQKYEARCYFRFYN
>NC_017154.1|WP_002208593.1|3462978_3464322_-|hypothetical-protein
MKISSQMVWGLLNQGCNIFIPFVIMFMSYKYLPLEMASVWVIFLSMISLITLFDFGLSPAIVRNVSYVISGAQNLVKRGIDDIIIKDVISYPLLSRLLFDIKRIYLYLSLIAFFIIVIGGLWYFYYISPLDIKIEVAYSWVLFSSALIINLIYLYYVPVLTGLGEIENSYKANVFGRIIWFFLSLLVFIFSPSILLLSLSFVFSVFINRYLCYFFYIRNSHVKAIDKTEMEKKSTVPFIGHNAAKLGVVSLGSFLINRSTTLIVGIVCPIVTAGQFVLSMQVFFALMAISNILLSIKIPEISQAVAKREHYTVKILIYKVVAFSSSIYLLGFVTFLILAEYVLPTIGVSLSFLPLDYLLILGLIYFLEMNHSICATIITSKNNVPFVFVSLFSGGLIILLSIMLSVHFKYGVVGLILAQGIVQLMYNNWKWPLMVYSEFIKNNIEDR
>NC_017154.1|WP_002208594.1|3464395_3465679_-|NAD(P)/FAD-dependent-oxidoreductase
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKASAGGLLDNFVIDGYRFDNAVHLSFATEEKVRDIFDRTPYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIESLIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQCNANELSVSWIGNRLRRAKLSEILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFSNGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWFYIYDEDIYASRAYSPSVKSSDNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVMYAMKKMGVANDEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDNQVKSVGRFGEWDYLWSNQSFLSGYSSI
>NC_017154.1|WP_002208595.1|3465679_3466537_-|NAD-dependent-epimerase/dehydratase
MKILITGVSGYLGSQLANALMLEHEVVGTVRAGSVCNRITDIGNVNLINVTDSGWIDKVLSFSPDVVINTAALYGRKGELLSELVDANIQFPLRILEMLVSTGKGLFFQCGTSLPADVSQYALTKNQFTELAREYCNKFSGKFIELKLEHFFGPFDDSTKFTTYVINSCRSHSDLKLTAGLQRRDFIYINDLINAFKIMISKSESLISGESISIGSGHAVTIKEFVETVAKMTSYQGNLQFGAIPTRENELMYSCASLARIQELGWLCQYSLNSAIKDTLNRMRV
>NC_017154.1|WP_002208596.1|3466573_3467887_-|lipopolysaccharide-biosynthesis-protein-RfbH
MSQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGLNF
>NC_017154.1|WP_002215987.1|3467904_3468843_-|CDP-glucose-4,6-dehydratase
MPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK
>NC_017154.1|WP_002215986.1|3468835_3468979_-|hypothetical-protein
MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLPPPHGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_6

4069865-4070265

Orphan

Consensus_repeat	Method
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	PILER-CR

3 spacers

The CRISPR arrays of NC_017154_6

>merge|NC_017154|6|4069865-4070265|PILER-CR
AGGATAGGGCGTGAGAGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGGAGGATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG

>NC_017154|6|4|4069865-4070265|PILER-CR
AGGATAGGGCGTGAGAGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGG
AGGATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGC
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGC
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002210140.1\|4059261_4060185_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NC_017154.1\|WP_002210157.1\|4078449_4078905_-\|DUF3757-domain-containing-protein	unknown	unknown	gnl\|CDD\|378884
NC_017154.1\|WP_002228200.1\|4066492_4068466_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NC_017154.1\|WP_002210146.1\|4065194_4065785_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NC_017154.1\|WP_002210143.1\|4063026_4063680_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NC_017154.1\|WP_002210156.1\|4077221_4077674_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_017154.1\|WP_002228691.1\|4053981_4058439_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NC_017154.1\|WP_002210149.1\|4068528_4069428_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NC_017154.1\|WP_002210152.1\|4075163_4075865_+\|esterase	unknown	unknown	gnl\|CDD\|182555
NC_017154.1\|WP_002213775.1\|4077869_4078328_+\|IS200/IS605-like-element-IS1541B-family-transposase	unknown	unknown	gnl\|CDD\|224854
NC_017154.1\|WP_002210147.1\|4066055_4066409_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NC_017154.1\|WP_002210151.1\|4071330_4072224_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NC_017154.1\|WP_002210150.1\|4070364_4071069_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_017154.1\|WP_002210145.1\|4064608_4065184_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NC_017154.1\|WP_002210153.1\|4076231_4076624_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NC_017154.1\|WP_002210144.1\|4063676_4064402_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NC_017154.1\|WP_002210155.1\|4076954_4077182_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_017154.1\|WP_000255944.1\|4074084_4075107_-\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_017154.1\|WP_002430134.1\|4076632_4076950_+\|primosomal-replication-protein-N	unknown	unknown	gnl\|CDD\|235071
NC_017154.1\|WP_002210142.1\|4060448_4062785_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002210140.1\|4059261_4060185_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	6.23198e-179
NC_017154.1\|WP_002210157.1\|4078449_4078905_-\|DUF3757-domain-containing-protein	gnl\|CDD\|378884	pfam12582, DUF3757, Protein of unknown function (DUF3757). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 154 amino acids in length.	2.3367e-40
NC_017154.1\|WP_002228200.1\|4066492_4068466_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	0
NC_017154.1\|WP_002210146.1\|4065194_4065785_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.90112e-140
NC_017154.1\|WP_002210143.1\|4063026_4063680_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	6.53077e-145
NC_017154.1\|WP_002210156.1\|4077221_4077674_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.38148e-68
NC_017154.1\|WP_002228691.1\|4053981_4058439_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NC_017154.1\|WP_002210149.1\|4068528_4069428_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NC_017154.1\|WP_002210152.1\|4075163_4075865_+\|esterase	gnl\|CDD\|182555	PRK10566, PRK10566, esterase; Provisional.	1.45098e-159
NC_017154.1\|WP_002213775.1\|4077869_4078328_+\|IS200/IS605-like-element-IS1541B-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.50747e-46
NC_017154.1\|WP_002210147.1\|4066055_4066409_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.17484e-53
NC_017154.1\|WP_002210151.1\|4071330_4072224_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.28073e-52
NC_017154.1\|WP_002210150.1\|4070364_4071069_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.10509e-65
NC_017154.1\|WP_002210145.1\|4064608_4065184_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.95051e-112
NC_017154.1\|WP_002210153.1\|4076231_4076624_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.10042e-54
NC_017154.1\|WP_002210144.1\|4063676_4064402_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.31484e-142
NC_017154.1\|WP_002210155.1\|4076954_4077182_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	3.62531e-36
NC_017154.1\|WP_000255944.1\|4074084_4075107_-\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.49492e-79
NC_017154.1\|WP_002430134.1\|4076632_4076950_+\|primosomal-replication-protein-N	gnl\|CDD\|235071	PRK02801, PRK02801, primosomal replication protein N; Provisional.	3.07746e-69
NC_017154.1\|WP_002210142.1\|4060448_4062785_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0

>NC_017154.1|WP_002210149.1|4068528_4069428_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQHDRAVISASTLYVVPTPIGNLGDITHRALEVLKGVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKADQLLAKLQEGQSIALVSDAGTPLINDPGYHLVRRCREAGIRVVPLPGACAAITALSAAGLASDRFCYEGFLPAKTKGRKDTLQALIEEPRTLIFYESTHRLLESLQDMVTVLGPQRYVVLARELTKTWESIHGAPVGELLAWVKEEETRRRGEMVLIVEGHKVQSDDALPADALRTLALLQKELPLKKAAALAAEIHGVKKNALYKYALEQQQGDVETEEDDIQQ
>NC_017154.1|WP_002228200.1|4066492_4068466_-|penicillin-binding-protein-activator
MLSSTFVRSKAGLVPVILAALILAACTGDAPQTPPPVNIQDEASANSDYYLQQLQQSSDDNKADWQLLAIRALLREAKVPQAAEQLSTLPANLSDTQRQEQQLLAAELLIAQKNTPAAADILAKLEATQLSANQKVRYYQAQIAANQDKATLPLIRAFIAQEPLLTDKAHQDNIDGTWQSLSQLTPQELNTMVINADENVLQGWLDLLRVYQDNKQDPELLKAGIKDWQTRYPQNPAAKNLPTALTQISNFSQASTAKIALLLPLSGPAQVFADAIQQGFTAAQNGSAVTASVPVTPNVTESSPTDTAAVVSDDTPATLPAPVPPPVVTNAQVKIYDTNTQPLAALLAQAQQDGATLVVGPLLKPEVEQLSATPSTLNILALNQPEASNNSPNICYFALSPEDEARDAAHHLWEQQKRMPLLLVPRGALGERIAKAFADEWQKQGGQTVLQQNFGSTTELKQSINSGAGIRLTGTPVSVSNVAAAPASVTIAGLTIPAPPIDAPVVSTSSSGNIDAVYIIATPSELTLIKPMIDMATSSRSKPALFASSRSYQAGAGPDYRLEMEGIQFSDIPLMAGSNPALLQQASAKYANDYSLVRLYAMGIDAWALANHFSEMRQIPGFQVKGVTGDLTASSDCVITRKLPWLQYRQGMVVPLA
>NC_017154.1|WP_002210147.1|4066055_4066409_-|YraN-family-protein
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAAVWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
>NC_017154.1|WP_002210146.1|4065194_4065785_-|DnaA-initiator-associating-protein-DiaA
MLERIKGCFTESIQTQIAAAEALPDAISCAAMALVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNADNVVLTAITNDRLHDEVYAKQVRALGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPSHRGARVQELHMLTVNCLCDLIDNTLFPHQND
>NC_017154.1|WP_002210145.1|4064608_4065184_-|divisome-associated-lipoprotein-YraP
MKVGYIFAMLFSTLLLQGCVGAVVVGSAAVATKTATDPRTIGTQVDDGTLEARVVNALSKDKEIKSQTRFVVTAYQGKVLLTGQTPSAELSNRAKQIASGVDGVTEVYNEMRLGKPVDLSTASMDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQQEAQSAAQIASKVSGVKHVTTAFTIVK
>NC_017154.1|WP_002210144.1|4063676_4064402_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MISVRRGFSQLWYWGKRGVIGIIALWMAGILIFAFLPVPFSMVMIERQLGAWLTGDFAYVAHSDWVPMDEISPYMALAVMAAEDQKFPDHWGFDVGAIESALSHNQRNQKRIRGASTLSQQTAKNVFLWDGRSWVRKGLEVGLTAGIELIWTKRRILTVYLNIAEFGNGIFGVEAAARHFFNKPASKLSASEAALLAAVLPNPLRFKVNAPSGYVISRQQWILRQMHQLGGKTFLQENTLD
>NC_017154.1|WP_002210143.1|4063026_4063680_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MKTVGVVLSGCGVLDGAEIHESVLTMLALDRAGAEVLFFAPDKPQLHVINHITGEIVAEERNVLVESARIARGLITPLSAADPEVLDALIVPGGFGAAKNLCDFAIKGGECSVEPDLYKLIQLMHKSGKPIGLMCISPVMLPKLLGKPIRLTIGNDPDTIDAIEIMGGEHVICPADDVVIDLENKVVTTPAYMLAGSISEAAKGIDKLVTKVLDLTE
>NC_017154.1|WP_002210142.1|4060448_4062785_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIRVLAQYYVDLMVKLGLVRFSLLLASALVLLAMVVQMAVTFVLRGSVETLDLVRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIKAPAVQEASNAPSGDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMNGHDALAMFNPEDFDLVLLDIQLPDMSGLDIARQIRAEYGKQSLPPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKQFWDSKPSSAVQKQEHKVMQTHESLLDTTMLEQYIDLVGPQLIHQSLEMFEQMMPGYLAVLDSNMTARDQKGITEEAHKIKGAAGSVGLRHIQQLAQQIQTPTLPAWWDNVQDWVDELKLEWRNDVQVLREWAAEVEKK
>NC_017154.1|WP_002210140.1|4059261_4060185_+|TIGR01212-family-radical-SAM-protein
MQLQQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCQVASFADEQMQQQSITQQLAIQAKKANRANRYLAYFQAYTSTYAEVNALAAMYQQALCEADIVGLCVGTRPDCVPDAVLDLLSSYQQQGYEVWLELGLQTANDKTLKRINRGHDFACYQQTARRARARGLKVCCHLIVGLPGEDRAQGRETLEKVVTTGVDGIKLHPLHIVEGSTMAKAWRAGRLTALALEDYVLTAGEMIRHTPAEVVYHRISASARRPTLLAPLWCENRWTGMNELNNYLLQHGVQGTAIGDAYCYR
>NC_017154.1|WP_002228691.1|4053981_4058439_-|glutamate-synthase-large-subunit
MLYDQSQERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDHFFRMVAEERGWRLAKNYAVGMMFLSQDEELAKASRRIVEEELQNETLSIVGWREVPTNPDVLGEIALSSLPRIEQIFVNAPAGWRSRDMERRLFVARRRIEKRISDKDFYACSFSNLVTIYKGLCMPADLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGEINTIAGNRQWAKARAYKFKTPLIPDLQDAAPFVNETGSDSSSLDNMLELFLSGGMDLIRAMRLLVPPAWQNNPDMDTDLRAFFDFNSMHMEPWDGPAGIVMSDGRYAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGKILHSAETDNDLKSRHPYKEWMEKNVKRLVPFEDLPEEQVGSRQLDDSQLETYQKQFGYSNEELDQIIRVLGENGQEATGSMGDDTPFAVLSSGPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFQQLTTLEGEHYRADRLDLTFNPAENDLEQAVLSLCDEAERKVRDGAVMLVLSDRAIAPNRLPVPAPMAVGAIQTRLVDKSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYESLAKLVDSQAIDKKYRDVMLNYRNGINKGLYKIMSKMGISTVASYRCAKLFEAVGLHRDLSDLCFQGVVSRIGGASFSDFQQDLQNLSKRAWLKRKPLDQGGLLKFVHNGEYHAYNPDVVSTLQKAVHSGEYSDYQAYAKLVNERPIATLRDLLAIKPQGTPIPVDQVEPAESLFKRFDTAAMSIGALSPEAHESLAIAMNSLGGFSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIVKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRRDHYHGLPERVVNYFHFIARETREIMAELGVSQLVDLIGRTDMLLELDGISAKQNKLDLSPMLKTATPHPGKALYCTESNPPFDKGLLNKELLSQAEPYIEAKQSKTFYFDIRNTDRSVGAALSGAIATKHGDQGLATDPIKAYFSGTAGQSFGVWNAGGVELMLTGDANDYVGKGMAGGRIAVRPPVGSNFRSHEASIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCVLGRTGINFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVEQLAIHEEHLRGLITEHVQLTGSSRGEEILANWPEWVTKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
>NC_017154.1|WP_002210150.1|4070364_4071069_-|pirin-family-protein
MITCRTAEQCGQADFGWLQARYTFSFGHYFDPTLLGYASLRVLNQEVLAPGAAFQPRTYPQVDILNLILQGEAEYRDSLGNHVHAKTGDALLFSPQQGVSYSEHNLSANKSLTRIQLWLNACPERESAPTQHQRLSTRPVQLLASPAGEQGSLQLRQQMWIHHLALAAGEQQKMPLHGHRAYLQSIHGTVDATGPQTGTSQRLTCGDGAFVEEEQHLVIKAITPLRALLIDLPV
>NC_017154.1|WP_002210151.1|4071330_4072224_+|LysR-family-transcriptional-regulator
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
>NC_017154.1|WP_000255944.1|4074084_4075107_-|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>NC_017154.1|WP_002210152.1|4075163_4075865_+|esterase
MWITIAPFVTLPTIFFYHGYTSSKEVYSYFAYAFAQAGFRTISPDADMHGARFNGNETQRLSHFWEILKSNIDELPDLKRHYQQAGLIEGERIGVAGASMGGMTALGAFARYPWIRVAADFMGSGYFTSLAHSLFPPRDAGREISQQAFERRLAPLADYELTHQLEKITERPLLVWHGEADDVVPAAESARLVQALRTRGGDNNLTYLTEAGIGHKITPTALRAGSDFFTQYL
>NC_017154.1|WP_002210153.1|4076231_4076624_+|30S-ribosomal-protein-S6
MRHYEIVFMVHPDQSEQVPGMIERYSATITNAAGTIHRLEDWGRRQLAYPINKLHKAHYVLLNVEAPQEAIDELETNFRFNDAVIRSMVMRVKHAVTEASPMVKAKDERRERHDFASEANDDSEAGDSEE
>NC_017154.1|WP_002430134.1|4076632_4076950_+|primosomal-replication-protein-N
MTTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIEFIDSGD
>NC_017154.1|WP_002210155.1|4076954_4077182_+|30S-ribosomal-protein-S18
MARYFRRRKFCRFTAEGVVEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARCIKRARYLSLLPYTDRHQ
>NC_017154.1|WP_002210156.1|4077221_4077674_+|50S-ribosomal-protein-L9
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVEFFEARRAELEAKLADVLAAAEARATKINELVSVTISSKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTAGEHEVHFQVHSDVFAKLNVVVVPEA
>NC_017154.1|WP_002213775.1|4077869_4078328_+|IS200/IS605-like-element-IS1541B-family-transposase
MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAECCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NC_017154.1|WP_002210157.1|4078449_4078905_-|DUF3757-domain-containing-protein
MMKYQLSFVLLLTPLAVFAEQHCPAIDAIKLIGGVYTAKATSGEEWVGILQGPLPQESGIKRFSEALFVVEGENNGNNVTGSGKFQKCTYDLQAENIQLDMYYGGTTWIASIRGKPYWEYEKGGFFEIYTCSNVAPEYCKFDILVPGSASR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017154_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017154_7

4404078-4404189

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017154_7

>merge|NC_017154|7|4404078-4404189|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NC_017154|7|6|4404078-4404189|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017154.1\|WP_002209491.1\|4401021_4403658_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_017154.1\|WP_100067904.1\|4404399_4405754_+\|IS3-like-element-IS1661-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017154.1\|WP_002209489.1\|4398229_4399234_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NC_017154.1\|WP_002209502.1\|4419982_4421680_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_017154.1\|WP_002209480.1\|4385991_4387455_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235774
NC_017154.1\|WP_002209482.1\|4388438_4389767_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_017154.1\|WP_002209484.1\|4391816_4392434_-\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NC_017154.1\|WP_079993164.1\|4406990_4407167_-\|DUF3289-family-protein	unknown	unknown	gnl\|CDD\|132079
NC_017154.1\|WP_002209481.1\|4387570_4388374_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NC_017154.1\|WP_002209499.1\|4415303_4417292_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|235152
NC_017154.1\|WP_002209497.1\|4409765_4412213_-\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|184948
NC_017154.1\|WP_002209494.1\|4406108_4406378_-\|hypothetical-protein	unknown	unknown	unknown
NC_017154.1\|WP_002209495.1\|4406542_4407007_-\|DUF943-family-protein	unknown	unknown	gnl\|CDD\|368741
NC_017154.1\|WP_002209485.1\|4392655_4395148_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NC_017154.1\|WP_002209487.1\|4395746_4397120_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NC_017154.1\|WP_002226019.1\|4408088_4409603_+\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NC_017154.1\|WP_002209500.1\|4417293_4419477_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NC_017154.1\|WP_002209483.1\|4389842_4391651_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_017154.1\|WP_002209498.1\|4412365_4413796_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_017154.1\|WP_002223919.1\|4399484_4400648_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346

Protein	Function_ID	Function_description	E-value
NC_017154.1\|WP_002209491.1\|4401021_4403658_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_017154.1\|WP_100067904.1\|4404399_4405754_+\|IS3-like-element-IS1661-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.01643e-48
NC_017154.1\|WP_002209489.1\|4398229_4399234_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_017154.1\|WP_002209502.1\|4419982_4421680_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NC_017154.1\|WP_002209480.1\|4385991_4387455_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235774	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.	0
NC_017154.1\|WP_002209482.1\|4388438_4389767_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105
NC_017154.1\|WP_002209484.1\|4391816_4392434_-\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NC_017154.1\|WP_079993164.1\|4406990_4407167_-\|DUF3289-family-protein	gnl\|CDD\|132079	TIGR03034, TIGR03034, conserved hypothetical protein. Members of this protein family have been found in several species of gammaproteobacteria, including Yersinia pestis and Y. pseudotuberculosis, Xylella fastidiosa, and Escherichia coli UTI89. As many as five members can be found in a single genome. The function is unknown. [Hypothetical proteins, Conserved].	5.70966e-16
NC_017154.1\|WP_002209481.1\|4387570_4388374_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NC_017154.1\|WP_002209499.1\|4415303_4417292_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|235152	PRK03705, PRK03705, glycogen debranching protein GlgX.	0
NC_017154.1\|WP_002209497.1\|4409765_4412213_-\|glycogen-phosphorylase	gnl\|CDD\|184948	PRK14986, PRK14986, glycogen phosphorylase; Provisional.	0
NC_017154.1\|WP_002209495.1\|4406542_4407007_-\|DUF943-family-protein	gnl\|CDD\|368741	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943). This family consists of several hypothetical putative membrane proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.	1.80736e-84
NC_017154.1\|WP_002209485.1\|4392655_4395148_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.20794e-132
NC_017154.1\|WP_002209487.1\|4395746_4397120_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NC_017154.1\|WP_002226019.1\|4408088_4409603_+\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NC_017154.1\|WP_002209500.1\|4417293_4419477_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NC_017154.1\|WP_002209483.1\|4389842_4391651_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_017154.1\|WP_002209498.1\|4412365_4413796_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_017154.1\|WP_002223919.1\|4399484_4400648_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0

>NC_017154.1|WP_002209491.1|4401021_4403658_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NC_017154.1|WP_002223919.1|4399484_4400648_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NC_017154.1|WP_002209489.1|4398229_4399234_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NC_017154.1|WP_002209487.1|4395746_4397120_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NC_017154.1|WP_002209485.1|4392655_4395148_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRCEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NC_017154.1|WP_002209484.1|4391816_4392434_-|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NC_017154.1|WP_002209483.1|4389842_4391651_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NC_017154.1|WP_002209482.1|4388438_4389767_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NC_017154.1|WP_002209481.1|4387570_4388374_-|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NC_017154.1|WP_002209480.1|4385991_4387455_+|dihydrolipoyl-dehydrogenase
MKTLNVDVAVIGGGTAGLGAYRAAKLLTPNVVMIEGGEYGTTCARVGCMPSKLLIAAAEAVHQIEKAPGFGIHPQGKPLINGREVMDRVKRERDRFVGFVLESVETIPAADKIQGYARFIDDNTLQVDDHTQLTSQKIIAQRIVIATGSRPSWPASWNELGDRLIINDDVFNWDDLPESVAVFGPGVIGLELGQALHRLGVQVKMFGVGGAVGPLTDSIVRDYAAKTLGDEFYLDPDVKVELMQREGDKVFIRYLDKSGRPQEIMVDYVLAATGRRPNVDKLGLENTSLILDERGVPQADRLTMQTNVPHIFIAGDASNQLPLLHEASDQARIAGVNAGGFPEVVPGLRRSPISVVFSDPQIAMVGATFRELAQKFSACGCFEIGEVSFENQGRSRVMLKNKGILRIYGEQGTGRFLGAEMMGPSAEHIAHLLAWAHQQQMTIDQMLDMPFYHPVIEEGLRTALRDLQSKLKLGADEAERCLRCPGE
>NC_017154.1|WP_100067904.1|4404399_4405754_+|IS3-like-element-IS1661-family-transposase
MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFRRQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYREGGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYPKKAESPERRKGTQGAAEKTRIVQALTAEHRLSCLLCAAKLARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMTVALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISGLKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRKEGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRKKYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ
>NC_017154.1|WP_002209494.1|4406108_4406378_-|hypothetical-protein
MLTDRDIEKTPKITRDYYFEYQPGDGYNPSSTIIFNHTLDASPLKNYLNSLGYERQSQILVIVKCGHYQAKRHNPLSISGWIRRTIKFG
>NC_017154.1|WP_002209495.1|4406542_4407007_-|DUF943-family-protein
MKVKSKKNLWALLLTGSALLGYVFWLLLHPVEIVSVHQRNDYSDVLVRNFPLTDKSKINWWLENRDMLKDKYSIPKPASDGFYTVIFWDFGDGYKEEGKYDRRCFDDMKTSKNCIDKNKVFSVENDRDKDILFSVYDGMYRLEKNGKIVKMKRE
>NC_017154.1|WP_079993164.1|4406990_4407167_-|DUF3289-family-protein
MKRSYLDNDNIKNSTFNGFNLFRIGFVLQRFNQFSFKPFMTNMEATVEIAGSRNESKK
>NC_017154.1|WP_002226019.1|4408088_4409603_+|glycerol-3-phosphate-dehydrogenase
METKDLIVIGGGINGAGIAADAAGRGLSVLLLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKLAPHIAFPMRFRLPHQPHLRPAWMIRTGLFLYDHLGKRTSLPASKGLRFGPESVLKPELVRGFEYSDCWVDDARLVVLNAQEVVKHGGEVRTRTKVTRTWREQGLWMVEALDVNTGKTFTWRAKGLVNATGPWVKQFFDDGLKLKSPYGIRLIKGSHIVVPRVHNQPQAYILQNEDHRIVFVIPWLDDYSIIGTTDVEYHGDPKEVKIDDQEMTYLLKVYNDHFKKQLGRDDIVWTYSGVRPLCDDESDSPQAVTRDYTLDVADEAGQAPLLSVFGGKLTTYRKLAEHALEKLSAYYPNVGPAWTKTGALPGGDIGGSRDSYTVQLRHRYNWLPEGLARRYTRTYGSHSELILANATRLESLGEHFGHGLYEAELRYLVENEWVVELDDAIWRRTKLGMALSDEEKQRVAQWLADAHTEKQQALPLVS
>NC_017154.1|WP_002209497.1|4409765_4412213_-|glycogen-phosphorylase
MTSPFSYTSPVVSVDALKHSIAYKLMFIIGKDPTIATQHDWLNATLFAVRDRMVERWLRSNRAQLSQDVRQVYYLSMEFLLGRTLSNALLSMGIYDEIEQALDEMGLSLSELLKEENDPGLGNGGLGRLAACFLDSLATLALPGRGYGIRYEYGMFSQKIVNGQQMESPDNWLEYGNAWEFPRHNTRYKVRFGGRIQQEGSKIRWLETEEILACAYDQIIPGFDTDATNTLRLWSAQASNEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILNRHWAMHHTFNNLADKIAIHLNDTHPVLSIPEMMRLLIDEHKFTWMDAWDVVQQVFSYTNHTLMSEALETWPVDMIGKILPRHLQIIFDINDHFLKLVEEQYPDDKELLSRVSVIDENNGRRIRMAWLAVIASHKVNGVSALHSELMVQSLFADFARIFPNRFCNKTNGVTPRRWLGLANRPLAAVLDDSIGQTWRTDLSQLSELEKNLDYPSFLLALQKAKLENKKRLAVYIAEKLNIVVNPAALFDVQIKRIHEYKRQLLNVLHVITRYNRIIDAPDNNWVPRVVIFAGKAASAYYNAKQIIHLINDVAKVINNDPRINNLLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEIREHVGEENIFIFGNTTEQVEALRKSGYNPRKYYDEDPELHQVLTQIATGTFSPEEPHRYTNLFDSLVNLGDHYQLLADYRSYVDTQEQVDALYRNRDEWSRKTLLNIANMGYFSSDRTIKEYADEIWHIKPIRL
>NC_017154.1|WP_002209498.1|4412365_4413796_-|glycogen-synthase-GlgA
MRVLHVCSELFPLLKTGGLADVIGALPAAQLAEGADVRIILPAFPDLRRGIPETVLVREIDTFAGRVALRYGHYRGIGIYLIDAPALYDRAGSPYHDASLYAYSDNYLRFALLGWMACELACGLDGYWRPEVVHAHDWHAGLTCAYLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSGDATLQEAFLAAAAEHSGQVGVQIGYHEAFSHRIIAGSDVILVPSRFEPCGLTQLYGLKYGTLPLVRHTGGLADTVVDCALENLADGSASGFVFNECEAQALVKAIRRAFVLWSRPKHWRHVQRHAMRLDFGWQLAAVDYLSLYRRL
>NC_017154.1|WP_002209499.1|4415303_4417292_-|glycogen-debranching-protein-GlgX
MAVLTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLFDEQGQERQIAMPARTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRALEGKVGDDPRFTGGVSQPDVRDSAAALPKCLVIHEEYDWQGDKPPAIPWGNTVIYEAHVRGLTQLHPDIPPELRGTYAALAHPALIEHLKTLGITTLELLPVQFHIDEPRLQKMGLSNYWGYNVLAPFAVDPDYASGREGISPLRELRDAVKALHNAGIEVILDVVFNHSAELDVFGPTLCQRGIDNASYYWLTPDGEYDNITGCGNALRLSHPYVTQWVIDCLNYWRDSCHVDGFRFDLGTVLGRTPAFDQHAPLFAALAADERLSACKLIAEPWDIGLGGYQLGNFPTGFSEWNDQYRDAMRGFWLRGEVPRGTFAQHFAASSRLFEQRGRLPSASINQITAHDGFTLLDLLCFNQKHNQMNGEENRDGSDNNHSNNFGCEGLVADAAIWQRRKACQRALLTTLLLSQGTPMLLAGDEQGHSQQGNNNAYCQNNILTWLDWGSADRALMTFTADLIRLRQQIPALTQDQWWQSGDSNVQWLDSQGQALSDAAWEQGCQQQLQILLSQRWLVLINATDHECEMHLPEGEWEGIPPFGVSDHAERLTTWRGSAHTICVLIKRD
>NC_017154.1|WP_002209500.1|4417293_4419477_-|1,4-alpha-glucan-branching-protein-GlgB
MSVLPDRQVINQLISGHYGDPFSILGMHETSQGLQICALLPDAREVWLVETENGRRIAQLTLEDPRGFFIAQLTRRKKSFRYQFAVTWQENPQIIEDPYRFGPLLQDIDSWLLAEGTHLRPYERLGAHLMSLDGVSGVSFAVWAPNAQRVSVVGDFNFWDGRRHPMRLRRENGIWELFLPGIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLCSPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGYQPLGLYAPTRRYGTPEDFKAFVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYADPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGIDALRIDAVASMIYRDYSRAEGQWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYKWNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMPGDAWQKFANLRAYYAFMWAHPGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQRLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPVPRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLATIYLLREN
>NC_017154.1|WP_002209502.1|4419982_4421680_+|sensor-histidine-kinase
MGISQTELIFSLLQQMCVYLVIAYLLSKTPLFIPLMQVTIRLPHKLVCYLTFSMFCIMGTYFGLNIDDSIANTRAIGAVLGGMLGGPSVGFLVGLTGGLHRYSMGGMTATACMLSTIAEGLLGGLLHLYLTRKNRLDLLFQPLVVAGITLVAEVLQMMIILAVARPFNEAVELVENIALPMMITNTIGAAMFMRILLDRRAIFEKYTTAFSAKALQIAARAEGLLRHGFDQQNSMRVARILYEELGVGAVAITDREKLLAFIGSGADHHQVGSAITSSHTHRAIELNQVVYADGNAVPYTCSISPTCKLGSTLVIPLRGEEHRVIGSIKLYEPKSKLFSSINRTLGEGIAHLLSAQILAGEFEQQKQLLAQSEIKLLHAQVNPHFLFNALNTLSVVIRRNPDHARNLVLSLSTFFRKNLKRSHDVVTLSDEIEHVNAYLEIEKARFADRLTVTVSLPNELMEAHLPAFSLQPVVENAIKHGISQMFSNGRVTLRGKLDDNTLVLEVEDNAGLYQPQPDGDGLGMSLVDRRIKARYGKEYGITVVSNAEVFTRIIIKLPFITVSEQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017154_3	3.7\|2769197\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769197-2769228	32	NC_017154.1	2371632-2371663	0	1.0
NC_017154_4	4.1\|3114417\|32\|NC_017154\|CRISPRCasFinder,CRT	3114417-3114448	32	NC_017154.1	2377198-2377229	0	1.0
NC_017154_5	5.2\|3456070\|16\|NC_017154\|CRISPRCasFinder	3456070-3456085	16	NC_017154.1	3456098-3456113	0	1.0
NC_017154_5	5.2\|3456070\|16\|NC_017154\|CRISPRCasFinder	3456070-3456085	16	NC_017154.1	3456105-3456120	0	1.0
NC_017154_5	5.2\|3456070\|16\|NC_017154\|CRISPRCasFinder	3456070-3456085	16	NC_017154.1	3456112-3456127	0	1.0
NC_017154_5	5.2\|3456070\|16\|NC_017154\|CRISPRCasFinder	3456070-3456085	16	NC_017154.1	3456119-3456134	0	1.0
NC_017154_6	6.1\|4069927\|51\|NC_017154\|PILER-CR	4069927-4069977	51	NC_017154.1	4069814-4069864	1	0.98

1. spacer 3.7|2769197|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to position: 2371632-2371663, mismatch: 0, identity: 1.0

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
aaaaagaatttgggattaaagttacccatcag	Protospacer
********************************

2. spacer 4.1|3114417|32|NC_017154|CRISPRCasFinder,CRT matches to position: 2377198-2377229, mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

3. spacer 5.2|3456070|16|NC_017154|CRISPRCasFinder matches to position: 3456098-3456113, mismatch: 0, identity: 1.0

agcaaatagcaaatag	CRISPR spacer
agcaaatagcaaatag	Protospacer
****************

4. spacer 5.2|3456070|16|NC_017154|CRISPRCasFinder matches to position: 3456105-3456120, mismatch: 0, identity: 1.0

agcaaatagcaaatag	CRISPR spacer
agcaaatagcaaatag	Protospacer
****************

5. spacer 5.2|3456070|16|NC_017154|CRISPRCasFinder matches to position: 3456112-3456127, mismatch: 0, identity: 1.0

agcaaatagcaaatag	CRISPR spacer
agcaaatagcaaatag	Protospacer
****************

6. spacer 5.2|3456070|16|NC_017154|CRISPRCasFinder matches to position: 3456119-3456134, mismatch: 0, identity: 1.0

agcaaatagcaaatag	CRISPR spacer
agcaaatagcaaatag	Protospacer
****************

7. spacer 6.1|4069927|51|NC_017154|PILER-CR matches to position: 4069814-4069864, mismatch: 1, identity: 0.98

gtcaacgccactcattccacaaaatcccgcttcggcgggtttttgctttgg	CRISPR spacer
gtcaactccactcattccacaaaatcccgcttcggcgggtttttgctttgg	Protospacer
****** ********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017154_4	4.1\|3114417\|32\|NC_017154\|CRISPRCasFinder,CRT	3114417-3114448	32	MT374852	Yersinia phage vB_YpM_3, complete genome	12-43	0	1.0
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NC_017154_2	2.2\|1788394\|32\|NC_017154\|PILER-CR,CRISPRCasFinder,CRT	1788394-1788425	32	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	86942-86973	7	0.781
NC_017154_3	3.1\|2768837\|32\|NC_017154\|CRISPRCasFinder,CRT	2768837-2768868	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NC_017154_2	2.2\|1788394\|32\|NC_017154\|PILER-CR,CRISPRCasFinder,CRT	1788394-1788425	32	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	46720-46751	8	0.75
NC_017154_2	2.2\|1788394\|32\|NC_017154\|PILER-CR,CRISPRCasFinder,CRT	1788394-1788425	32	NC_019694	Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence	20911-20942	8	0.75
NC_017154_3	3.6\|2769137\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769137-2769168	32	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	14979-15010	8	0.75
NC_017154_3	3.7\|2769197\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769197-2769228	32	NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	1912-1943	8	0.75
NC_017154_2	2.2\|1788394\|32\|NC_017154\|PILER-CR,CRISPRCasFinder,CRT	1788394-1788425	32	MT774386	CrAssphage cr110_1, complete genome	42858-42889	9	0.719
NC_017154_2	2.2\|1788394\|32\|NC_017154\|PILER-CR,CRISPRCasFinder,CRT	1788394-1788425	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	25849-25880	9	0.719
NC_017154_3	3.2\|2768897\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768897-2768928	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	4006-4037	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NC_017154_3	3.3\|2768957\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2768957-2768988	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NC_017154_4	4.2\|3114477\|33\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	3114477-3114509	33	NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	923-955	9	0.727
NC_017154_3	3.4\|2769017\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769017-2769048	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688
NC_017154_3	3.6\|2769137\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769137-2769168	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	815356-815387	11	0.656
NC_017154_3	3.6\|2769137\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769137-2769168	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	820287-820318	11	0.656
NC_017154_3	3.6\|2769137\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769137-2769168	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2180994-2181025	11	0.656
NC_017154_3	3.6\|2769137\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769137-2769168	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2185925-2185956	11	0.656

1. spacer 4.1|3114417|32|NC_017154|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

17. spacer 2.2|1788394|32|NC_017154|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

18. spacer 3.1|2768837|32|NC_017154|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

19. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

20. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

21. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

22. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

23. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

24. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

25. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

26. spacer 2.2|1788394|32|NC_017154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .*

27. spacer 2.2|1788394|32|NC_017154|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

28. spacer 3.6|2769137|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 8, identity: 0.75

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
ttactcaaacaagttgaggcgacgattctaaa	Protospacer
*.. ********.** ***********. * *

29. spacer 3.7|2769197|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 8, identity: 0.75

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
taaaagcttttgggattaaagttattcaaaat	Protospacer
 *****  ****************..**  *

30. spacer 2.2|1788394|32|NC_017154|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

31. spacer 2.2|1788394|32|NC_017154|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

32. spacer 3.2|2768897|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.**

33. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

34. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

40. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

42. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

47. spacer 3.3|2768957|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

48. spacer 4.2|3114477|33|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

agcaaaaatcttaattacatctgatgatttcgg	CRISPR spacer
ggaaaaaaacttaattacatctgataatccatt	Protospacer
.* ***** ****************.**..

49. spacer 3.4|2769017|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

50. spacer 3.6|2769137|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

51. spacer 3.6|2769137|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

52. spacer 3.6|2769137|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

53. spacer 3.6|2769137|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500379 : 546851

Bodo_saltans_virus(20.0%)

transposase,plate,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210509.1\|500379_503196_+\|tRNA	isoleucine--tRNA ligase	A0A2H4UVG0	Bodo_saltans_virus	1.0e-63	26.1
WP_002210508.1\|503195_503705_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_002228112.1\|503772_504231_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_002210506.1\|504211_505165_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_002213775.1\|505546_506005_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210504.1\|506457_507279_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_002224759.1\|507751_508927_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	6.9e-51	34.3
WP_002210502.1\|508942_512176_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_002210501.1\|512403_513018_-	LysE family translocator	NA	NA	NA	NA
WP_002210499.1\|513341_514142_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_002210498.1\|514138_514594_+	threonine/serine exporter	NA	NA	NA	NA
WP_002210497.1\|514743_515226_+	type 3 dihydrofolate reductase	A0A219UQN5	Bacillus_phage	4.7e-30	42.6
WP_002213775.1\|515437_515896_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_071525509.1\|516337_516652_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_002210493.1\|516778_517243_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_002210492.1\|517332_518202_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA
WP_002210491.1\|518218_518596_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_002210490.1\|518609_519428_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_002210489.1\|519420_520416_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_002210488.1\|520399_521704_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA
WP_002228111.1\|521771_524114_-	LPS assembly protein LptD	NA	NA	NA	NA
WP_002210486.1\|524298_525132_+	co-chaperone DjlA	NA	NA	NA	NA
WP_002210485.1\|525429_526050_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_002214747.1\|527272_528016_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_002210482.1\|528345_529359_+	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_002210481.1\|529369_529930_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002210480.1\|529938_531441_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002210479.1\|531603_532122_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002210478.1\|532195_532639_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002210477.1\|532671_534516_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002210476.1\|534508_535492_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002210475.1\|535509_538098_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_002210474.1\|538201_540550_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_002228110.1\|540562_541135_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_002228109.1\|541159_542782_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|542807_543911_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002210473.1\|543903_544521_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214737.1\|544526_544892_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210471.1\|544884_545376_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002210470.1\|545495_546851_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

894107 : 982438

Staphylococcus_phage(22.22%)

protease,transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100067904.1\|894107_895462_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002211645.1\|895733_897158_+	MFS transporter	NA	NA	NA	NA
WP_002211646.1\|897416_899597_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_002211647.1\|899668_900997_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_002211648.1\|900993_902742_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_002211649.1\|902738_903689_-	acetyltransferase	NA	NA	NA	NA
WP_002228661.1\|906755_906950_+	hypothetical protein	NA	NA	NA	NA
WP_002211652.1\|907097_907931_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_002211654.1\|908307_909684_-	peptidase	NA	NA	NA	NA
WP_002211655.1\|910245_910989_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_002215903.1\|910969_911620_-	acyl-homoserine-lactone synthase	NA	NA	NA	NA
WP_002215902.1\|912794_913445_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002215900.1\|913895_914291_+	lipoprotein	NA	NA	NA	NA
WP_002211662.1\|916566_917067_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002215896.1\|917109_918654_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211664.1\|918665_920018_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|920014_920701_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002210014.1\|922439_922931_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211927.1\|923318_925961_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-92	31.6
WP_002211928.1\|925963_928312_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_015683871.1\|928327_930625_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002210008.1\|930611_931379_+	hypothetical protein	NA	NA	NA	NA
WP_086016632.1\|931474_932171_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210005.1\|932779_933415_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|934743_936906_+	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210001.1\|937461_938421_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210000.1\|938466_939966_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002209999.1\|939998_940982_+	ABC transporter permease	NA	NA	NA	NA
WP_002209998.1\|941064_943098_-	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_002209997.1\|943201_944302_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209995.1\|944601_945678_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002209994.1\|945860_946133_-	oxidative damage protection protein	NA	NA	NA	NA
WP_002228057.1\|946310_947426_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002209991.1\|947763_948483_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002209990.1\|948482_948809_+	YggL family protein	NA	NA	NA	NA
WP_002209989.1\|948919_949846_+	glutaminase B	NA	NA	NA	NA
WP_002224905.1\|951189_960522_+	phage minor structural protein	NA	NA	NA	NA
WP_002209987.1\|960711_961842_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_002215612.1\|962528_962819_-	YggU family protein	NA	NA	NA	NA
WP_002209984.1\|962815_963370_-	YggT family protein	NA	NA	NA	NA
WP_002209983.1\|963657_964479_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002215609.1\|964611_965310_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209981.1\|965329_966454_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_002209980.1\|966562_967678_-	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209979.1\|967681_968566_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209978.1\|968745_969168_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209977.1\|969167_969731_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209976.1\|969846_970806_-	glutathione synthase	NA	NA	NA	NA
WP_002209975.1\|970831_971563_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002209973.1\|971814_972522_-	deoxyribonuclease I	NA	NA	NA	NA
WP_002228653.1\|972619_973132_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|973324_974479_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|975685_977665_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209968.1\|977824_978145_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_071525520.1\|978178_978289_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209967.1\|978434_979187_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209965.1\|979677_981672_+	transketolase	NA	NA	NA	NA
WP_002213759.1\|981979_982438_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1168805 : 1236655

Escherichia_phage(21.43%)

protease,transposase,tRNA,integrase

attL 1225730:1225789|attR 1236796:1236880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|1168805_1169264_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002212124.1\|1169517_1169850_+	YqcC family protein	NA	NA	NA	NA
WP_002212125.1\|1169849_1170623_+\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
WP_002212126.1\|1170650_1171100_+	flavodoxin	NA	NA	NA	NA
WP_002212127.1\|1171189_1171579_-	DUF3461 family protein	NA	NA	NA	NA
WP_002212128.1\|1171702_1172527_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_002212129.1\|1172701_1175383_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_002212130.1\|1175442_1176234_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_002221800.1\|1176668_1177394_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_002212133.1\|1178586_1179312_+	UMP kinase	NA	NA	NA	NA
WP_002212134.1\|1179447_1180005_+	ribosome recycling factor	NA	NA	NA	NA
WP_002212135.1\|1180218_1181415_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_002212136.1\|1181638_1182397_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.4e-23	40.7
WP_002212137.1\|1182406_1183255_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002212138.1\|1183283_1184639_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_002212140.1\|1187221_1187719_+	molecular chaperone Skp	NA	NA	NA	NA
WP_002212141.1\|1187722_1188745_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_002217656.1\|1188902_1189433_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002212143.1\|1189436_1190225_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_002212144.1\|1190228_1191413_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_002212145.1\|1191409_1192006_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	3.8e-29	41.4
WP_002228634.1\|1192168_1195651_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	3.6e-204	37.2
WP_002212147.1\|1195663_1196623_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_002212148.1\|1196806_1197205_+	VOC family protein	NA	NA	NA	NA
WP_002212149.1\|1197206_1198589_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_002212150.1\|1198825_1199143_+	cytochrome c	NA	NA	NA	NA
WP_002218374.1\|1199407_1199668_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_002212152.1\|1199654_1199855_-	YaeP family protein	NA	NA	NA	NA
WP_002212153.1\|1200095_1200644_+	YaeQ family protein	NA	NA	NA	NA
WP_002212154.1\|1200646_1201063_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002212155.1\|1201147_1201831_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_002212156.1\|1201964_1203683_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_002212157.1\|1203786_1204494_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_002212159.1\|1205014_1205830_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA
WP_002212160.1\|1205893_1206547_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_015683885.1\|1207758_1208325_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_002220061.1\|1208575_1208761_-	hypothetical protein	NA	NA	NA	NA
WP_002210693.1\|1214465_1215269_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SKP9	Klosneuvirus	3.6e-27	29.2
WP_002220059.1\|1216128_1216911_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_002228041.1\|1216952_1218341_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	4.5e-09	36.8
WP_002210697.1\|1218412_1219168_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_002210698.1\|1219212_1219932_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002210699.1\|1219986_1220451_-	ribonuclease HI	J9Q745	Salmonella_phage	9.1e-47	53.9
WP_002210700.1\|1220520_1221285_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.9e-41	39.8
WP_002210701.1\|1221530_1223015_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_002210703.1\|1223353_1223587_+	hypothetical protein	NA	NA	NA	NA
WP_001297096.1\|1223637_1224417_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|1224416_1225439_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
1225730:1225789	attL	NA	NA	NA	NA
WP_002215951.1\|1226043_1226361_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.0e-13	48.1
WP_002210705.1\|1226366_1226681_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_002210707.1\|1227029_1228118_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.4e-114	60.4
WP_002215950.1\|1228114_1229074_-	toprim domain-containing protein	A0A1W6JPG0	Morganella_phage	1.6e-50	41.0
WP_002215949.1\|1229066_1229609_-	ash family protein	NA	NA	NA	NA
WP_002210709.1\|1229608_1229809_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.6e-08	51.7
WP_002210710.1\|1229801_1230689_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_002215946.1\|1231496_1231724_+	hypothetical protein	NA	NA	NA	NA
WP_002215945.1\|1231885_1233556_-	hypothetical protein	NA	NA	NA	NA
WP_002210712.1\|1233606_1234695_-	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_002210713.1\|1234773_1235973_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.2e-108	50.2
WP_002213759.1\|1236196_1236655_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
1236796:1236880	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1277963 : 1335117

Planktothrix_phage(18.18%)

protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210751.1\|1277963_1278782_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002210753.1\|1278998_1280489_-	molybdate ABC transporter ATP-binding protein ModF	A0A1M7XV31	Cedratvirus	2.8e-12	26.8
WP_002210754.1\|1280598_1281390_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA
WP_002217291.1\|1281689_1281842_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA
WP_002210756.1\|1282076_1282856_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210757.1\|1282855_1283551_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_002210758.1\|1283544_1284624_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.4e-21	35.1
WP_002210759.1\|1284679_1285501_-	pyridoxal phosphatase	NA	NA	NA	NA
WP_002210760.1\|1285791_1286796_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_002210762.1\|1288360_1289398_+	biotin synthase BioB	NA	NA	NA	NA
WP_002210763.1\|1289397_1290549_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_002210764.1\|1290532_1291336_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_002216554.1\|1291328_1292051_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_002210766.1\|1292202_1292913_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-13	25.3
WP_002210767.1\|1294002_1296018_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_002210768.1\|1296309_1296555_+	DNA-binding protein VF530	NA	NA	NA	NA
WP_002210769.1\|1296685_1297609_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	3.7e-23	27.8
WP_002210771.1\|1298140_1299121_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_002210772.1\|1299221_1299701_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002210773.1\|1299697_1299943_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_002210774.1\|1299945_1300398_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_002210775.1\|1300540_1301251_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_002213775.1\|1301484_1301943_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002220180.1\|1302171_1303875_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.4e-57	31.5
WP_002218281.1\|1303897_1305370_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002218278.1\|1305427_1306024_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_002228035.1\|1306388_1308437_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_002214199.1\|1308668_1309562_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002214197.1\|1309599_1310448_-	DMT family transporter	NA	NA	NA	NA
WP_002214195.1\|1310793_1311657_+	xanthosine phosphorylase	Q5YBA4	Grouper_iridovirus	2.3e-51	40.7
WP_002213775.1\|1312585_1313044_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002220173.1\|1313849_1314323_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA
WP_002220171.1\|1314680_1316495_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-16	28.4
WP_002220170.1\|1316481_1317846_+	sigma 54-interacting transcriptional regulator	Q6XM27	Feldmannia_irregularis_virus	1.3e-05	29.1
WP_002220169.1\|1318193_1319303_+	alkene reductase	NA	NA	NA	NA
WP_002220168.1\|1319303_1320215_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002220165.1\|1320769_1320997_+	N5,N10-methylene tetrahydromethanopterin reductase	NA	NA	NA	NA
WP_002220163.1\|1321007_1321334_+	EthD family reductase	NA	NA	NA	NA
WP_002220162.1\|1321372_1322479_-	ABC transporter permease	NA	NA	NA	NA
WP_002220159.1\|1322491_1323667_-	ABC transporter permease	NA	NA	NA	NA
WP_002220158.1\|1323671_1325414_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.3e-24	34.6
WP_002220156.1\|1325427_1326414_-	secretion protein HlyD	NA	NA	NA	NA
WP_002220154.1\|1326465_1327176_-	transcriptional regulator CecR	NA	NA	NA	NA
WP_002220152.1\|1327566_1328922_+	ATP-dependent RNA helicase RhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.1e-55	35.6
WP_002228620.1\|1330135_1330330_+	hypothetical protein	NA	NA	NA	NA
WP_016256670.1\|1330363_1330690_+	hypothetical protein	NA	NA	NA	NA
WP_002228617.1\|1330830_1331067_+	hypothetical protein	NA	NA	NA	NA
WP_002223532.1\|1331150_1331465_+	hypothetical protein	NA	NA	NA	NA
WP_002213759.1\|1334658_1335117_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1378316 : 1423675

Pseudomonas_phage(25.0%)

tail,coat,transposase,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210815.1\|1378316_1378826_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210816.1\|1378860_1379118_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210817.1\|1379121_1380252_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210818.1\|1380414_1382703_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_002210820.1\|1383196_1383925_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_002210821.1\|1384186_1386862_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	4.0e-102	34.4
WP_002228028.1\|1387049_1389923_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
WP_002210824.1\|1389990_1390644_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_015683892.1\|1390646_1391219_-	histidine phosphotransferase	NA	NA	NA	NA
WP_002216093.1\|1391386_1393339_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_002210825.1\|1393362_1394517_-	MFS transporter	NA	NA	NA	NA
WP_002210826.1\|1395619_1396735_+	porin OmpC	Q1MVN1	Enterobacteria_phage	9.6e-111	57.6
WP_002213759.1\|1396936_1397395_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002228026.1\|1398184_1399351_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002208870.1\|1399625_1401152_-	MFS transporter	NA	NA	NA	NA
WP_002208869.1\|1401528_1402557_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|1402630_1404418_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|1404839_1405775_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|1405946_1406189_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|1406394_1407117_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|1407390_1407870_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|1408080_1409385_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002208861.1\|1410093_1410906_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|1410881_1411676_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|1412306_1412597_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_015683893.1\|1412642_1413260_+	hypothetical protein	NA	NA	NA	NA
WP_002208857.1\|1413264_1413459_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|1413455_1414964_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|1414985_1415354_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002208854.1\|1415355_1415655_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208853.1\|1415775_1417269_+\|coat	coat protein	NA	NA	NA	NA
WP_002208852.1\|1417535_1418942_+	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|1418938_1419994_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002215460.1\|1420009_1420606_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|1420602_1421058_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|1421061_1422198_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|1422194_1422455_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|1422451_1422799_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_002208845.1\|1422895_1423675_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4

DBSCAN-SWA_6

1546547 : 1705134

112

Bacillus_phage(16.0%)

protease,transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211349.1\|1546547_1546868_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.2e-15	42.7
WP_002211348.1\|1546893_1549170_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.4e-166	41.7
WP_002213759.1\|1549462_1549921_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211347.1\|1550292_1550511_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002211344.1\|1551601_1553326_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	3.3e-17	31.8
WP_002217690.1\|1553328_1555095_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	6.8e-26	24.9
WP_002211341.1\|1555553_1556516_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.9e-63	45.7
WP_002211340.1\|1557282_1557777_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002211339.1\|1557899_1561817_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.5e-89	48.8
WP_002211338.1\|1562009_1562618_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_002228009.1\|1562628_1563972_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-76	39.4
WP_002211336.1\|1564213_1565506_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-92	43.5
WP_002211335.1\|1565736_1566885_+	MFS transporter	NA	NA	NA	NA
WP_002211334.1\|1567038_1567773_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	3.6e-21	27.4
WP_002211333.1\|1568759_1569434_+	glycosyltransferase family 25 protein	A0A2H4UUT1	Bodo_saltans_virus	7.8e-31	40.5
WP_002211331.1\|1571888_1572746_-	formate transporter FocA	NA	NA	NA	NA
WP_002211330.1\|1573442_1575209_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_002211329.1\|1575357_1576395_+	L-asparaginase 2	NA	NA	NA	NA
WP_002211328.1\|1576663_1577758_+	hemagglutinin	B0FIT1	Escherichia_phage	3.7e-06	32.7
WP_002220027.1\|1577965_1579627_+	hypothetical protein	NA	NA	NA	NA
WP_002211325.1\|1581242_1582529_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002211324.1\|1582841_1583534_+	(d)CMP kinase	NA	NA	NA	NA
WP_002211323.1\|1583707_1585381_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_002211322.1\|1585441_1585726_+	integration host factor subunit beta	A7KV42	Bacillus_phage	2.4e-10	40.2
WP_002211321.1\|1586272_1588564_+	ComEC family protein	NA	NA	NA	NA
WP_002211320.1\|1588599_1590348_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.7e-66	31.5
WP_002211319.1\|1590344_1591331_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_002216263.1\|1591338_1592775_-	VOC family protein	NA	NA	NA	NA
WP_002211317.1\|1593493_1593703_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.0e-10	50.0
WP_002211315.1\|1594250_1594433_+	hypothetical protein	NA	NA	NA	NA
WP_002211314.1\|1594429_1595182_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_002211313.1\|1595544_1596438_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_002211311.1\|1597210_1597996_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_002211310.1\|1597992_1599315_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_002211309.1\|1599295_1600024_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_002211308.1\|1600020_1604478_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_002213759.1\|1604693_1605152_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211305.1\|1607514_1608063_+	YcbK family protein	A0A0K1LLY2	Rhodobacter_phage	7.8e-05	34.7
WP_002430096.1\|1608923_1609040_-	hypothetical protein	NA	NA	NA	NA
WP_002211303.1\|1609193_1610384_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_002354007.1\|1610640_1611720_-	porin OmpF	Q1MVN1	Enterobacteria_phage	3.2e-111	56.5
WP_002211301.1\|1612020_1613421_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	6.5e-80	35.2
WP_002228013.1\|1613919_1615125_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_002211296.1\|1619090_1620101_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_002211295.1\|1620283_1620835_+	cell division protein ZapC	NA	NA	NA	NA
WP_002363919.1\|1620860_1621970_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_002211293.1\|1622072_1624193_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_002211292.1\|1624198_1626112_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.5e-47	28.9
WP_002211291.1\|1626240_1627527_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_002211290.1\|1627513_1629166_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_002211289.1\|1629162_1629741_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_002228015.1\|1630010_1630178_+	ribosome modulation factor	NA	NA	NA	NA
WP_002213775.1\|1630375_1630834_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_015683910.1\|1631994_1632774_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.0e-138	99.2
WP_000255944.1\|1632773_1633796_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002211286.1\|1634429_1634618_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|1634883_1635402_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_002224683.1\|1635470_1637222_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|1637432_1637888_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_002213775.1\|1638056_1638515_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213066.1\|1638704_1639766_-	porin OmpA	NA	NA	NA	NA
WP_002213065.1\|1640123_1640630_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_002213064.1\|1640858_1641494_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_002213063.1\|1641595_1643734_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002213062.1\|1643763_1644210_-	YccF domain-containing protein	NA	NA	NA	NA
WP_002221095.1\|1644403_1646458_+	DNA helicase IV	A7KV33	Bacillus_phage	1.5e-16	25.8
WP_002213060.1\|1646518_1646983_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002213058.1\|1647161_1647842_-	DUF2057 family protein	NA	NA	NA	NA
WP_002213056.1\|1648158_1648575_+	CoA-binding protein	NA	NA	NA	NA
WP_002213054.1\|1648683_1649001_-	heat shock protein HspQ	NA	NA	NA	NA
WP_002213052.1\|1649061_1650252_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.1e-26	28.1
WP_002213049.1\|1650345_1650624_+	acylphosphatase	NA	NA	NA	NA
WP_002213046.1\|1650675_1651005_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_002213039.1\|1654650_1657068_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|1657221_1657968_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|1658698_1658917_+	hypothetical protein	NA	NA	NA	NA
WP_002213034.1\|1659180_1659705_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002213032.1\|1659694_1660978_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213030.1\|1660979_1661717_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002213028.1\|1661732_1662971_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|1662963_1663683_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213025.1\|1663684_1664437_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_002213024.1\|1664439_1665228_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|1665314_1665755_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|1665792_1666041_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|1666139_1666988_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002213014.1\|1667976_1668477_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002214707.1\|1668519_1670070_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002213011.1\|1670081_1671434_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|1671430_1672117_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002228049.1\|1672116_1673853_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|1673856_1674348_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002210013.1\|1674765_1677414_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_015683911.1\|1677410_1679759_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_002210011.1\|1679773_1681996_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_016257642.1\|1682139_1682496_+	hypothetical protein	NA	NA	NA	NA
WP_002216110.1\|1682689_1682884_+	hypothetical protein	NA	NA	NA	NA
WP_002210010.1\|1684108_1684744_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_015683912.1\|1684759_1687060_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211930.1\|1687056_1687830_+	hypothetical protein	NA	NA	NA	NA
WP_002211931.1\|1687983_1688244_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211932.1\|1688259_1690443_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002214564.1\|1690615_1691086_+	hypothetical protein	NA	NA	NA	NA
WP_002211935.1\|1693250_1694483_+	hypothetical protein	NA	NA	NA	NA
WP_002211936.1\|1694479_1697902_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_002211937.1\|1697945_1699547_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002211938.1\|1699564_1700623_+	PAAR domain protein	NA	NA	NA	NA
WP_002211939.1\|1700637_1701093_+	hypothetical protein	NA	NA	NA	NA
WP_002211940.1\|1701313_1703077_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211941.1\|1703040_1704126_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002214552.1\|1704100_1704682_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211943.1\|1704681_1705134_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_7

1874702 : 1934408

Escherichia_phage(25.0%)

transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|1874702_1875725_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002213759.1\|1876306_1876765_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002227902.1\|1876955_1877192_-	major outer membrane lipoprotein	NA	NA	NA	NA
WP_002210936.1\|1877512_1878925_-	pyruvate kinase PykF	NA	NA	NA	NA
WP_002210938.1\|1881340_1881532_-	hypothetical protein	NA	NA	NA	NA
WP_002210939.1\|1881576_1882233_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.1e-21	34.7
WP_002210940.1\|1882283_1883435_-	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	1.0e-83	45.7
WP_002210941.1\|1883914_1885117_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	6.9e-14	23.2
WP_002210942.1\|1885406_1886339_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210943.1\|1886427_1887453_-	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	5.9e-30	31.4
WP_002216285.1\|1887786_1887876_+	YnhF family membrane protein	NA	NA	NA	NA
WP_002210944.1\|1887979_1888558_-	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	4.4e-43	45.6
WP_002210945.1\|1888918_1889770_-	hydrolase	A0A2H4PI41	Streptomyces_phage	2.8e-17	43.9
WP_002210946.1\|1890209_1890560_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_087768161.1\|1890758_1890854_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210947.1\|1890868_1891549_-	ribonuclease T	NA	NA	NA	NA
WP_002210948.1\|1891627_1892035_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_002210949.1\|1892307_1895262_+	RHS repeat protein	NA	NA	NA	NA
WP_002210950.1\|1895482_1896580_-	alkene reductase	NA	NA	NA	NA
WP_002210951.1\|1896667_1897267_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002210952.1\|1897489_1899127_-	phosphoethanolamine transferase EptA	NA	NA	NA	NA
WP_002210953.1\|1899300_1899540_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_002210954.1\|1899671_1900568_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_002210955.1\|1901365_1901797_+	virulence master transcriptional regulator RovA	NA	NA	NA	NA
WP_002210956.1\|1901940_1902408_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_002218322.1\|1902962_1904075_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002218323.1\|1904132_1904447_+	lipoprotein	NA	NA	NA	NA
WP_002210959.1\|1904537_1905191_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002210960.1\|1905372_1906647_+\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	3.0e-84	42.4
WP_002210961.1\|1906801_1907662_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_002210962.1\|1907721_1908327_-	glutathione transferase GstA	NA	NA	NA	NA
WP_002210964.1\|1908571_1908835_-	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_002210965.1\|1909080_1909671_-	YIP1 family protein	NA	NA	NA	NA
WP_002215910.1\|1909925_1911431_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_002210967.1\|1912073_1913354_-	CMD domain-containing protein	NA	NA	NA	NA
WP_002210969.1\|1913743_1914559_-	peptide ABC transporter ATP-binding protein SapF	G9BWD6	Planktothrix_phage	6.5e-16	30.9
WP_002210970.1\|1914558_1915551_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	8.8e-07	25.3
WP_002210971.1\|1915550_1916441_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_002210972.1\|1916427_1917393_-	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002210973.1\|1917389_1919036_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002213759.1\|1919693_1920152_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210974.1\|1920316_1921345_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002210975.1\|1921589_1922255_+	phage shock protein PspA	NA	NA	NA	NA
WP_002210976.1\|1922416_1922644_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002210977.1\|1922643_1923003_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002216375.1\|1923087_1923330_+	phage shock protein PspD	NA	NA	NA	NA
WP_002210980.1\|1924702_1925764_+	TIGR01620 family protein	NA	NA	NA	NA
WP_002210981.1\|1925773_1926232_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_002210982.1\|1926293_1926740_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_002210983.1\|1927074_1928652_+	transcriptional regulator TyrR	NA	NA	NA	NA
WP_002213775.1\|1928798_1929257_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210984.1\|1929509_1930013_-	thiol peroxidase	NA	NA	NA	NA
WP_001297096.1\|1930263_1931043_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|1931042_1932065_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002210859.1\|1932971_1933211_-	YebV family protein	NA	NA	NA	NA
WP_002210858.1\|1933418_1934408_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_8

1938014 : 1977115

Moraxella_phage(14.29%)

protease,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216611.1\|1938014_1938572_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|1938592_1939123_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210852.1\|1939128_1939683_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216616.1\|1940161_1942813_-	PqiB family protein	NA	NA	NA	NA
WP_002367629.1\|1942781_1944029_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002210850.1\|1944260_1944758_+	GAF domain-containing protein	NA	NA	NA	NA
WP_002210849.1\|1944853_1945567_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_015683920.1\|1945586_1947659_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.2e-86	35.0
WP_002210847.1\|1948132_1949014_+\|protease	protease HtpX	NA	NA	NA	NA
WP_002210846.1\|1949671_1950214_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002215118.1\|1950366_1951146_+	fimbrial chaperone	NA	NA	NA	NA
WP_002210844.1\|1951227_1953840_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002215120.1\|1953836_1955000_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002210843.1\|1954996_1955800_+	molecular chaperone	NA	NA	NA	NA
WP_002210841.1\|1957545_1958712_+	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210840.1\|1958898_1959690_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_002210839.1\|1960092_1960944_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-11	28.8
WP_002210838.1\|1961158_1962550_-	L-cystine transporter	NA	NA	NA	NA
WP_002210837.1\|1962753_1963302_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_002210836.1\|1963781_1964492_-	porin	NA	NA	NA	NA
WP_002210835.1\|1964789_1966082_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210834.1\|1966097_1967225_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_002210833.1\|1967238_1968159_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210832.1\|1968151_1969042_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_002210831.1\|1969082_1970750_-	pectate disaccharide-lyase	NA	NA	NA	NA
WP_002210830.1\|1971085_1971847_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_002210829.1\|1971938_1972775_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_002210828.1\|1973110_1973461_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|1973508_1974717_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_000255944.1\|1976092_1977115_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0

DBSCAN-SWA_9

2349311 : 2448967

Escherichia_phage(13.46%)

tail,integrase,transposase,tRNA,lysis

attL 2350792:2350851|attR 2463214:2463326

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211184.1\|2349311_2350010_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_002211183.1\|2350146_2350752_+	Slp family lipoprotein	NA	NA	NA	NA
WP_087768167.1\|2350752_2350860_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
2350792:2350851	attL	NA	NA	NA	NA
WP_002211182.1\|2351394_2353083_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	1.8e-31	28.9
WP_002211181.1\|2353242_2354364_+	ribonuclease D	NA	NA	NA	NA
WP_002211180.1\|2354600_2354870_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002211179.1\|2354873_2355686_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_002220631.1\|2355710_2356397_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_002215627.1\|2357529_2358615_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_002211740.1\|2358685_2359342_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002211739.1\|2359444_2359891_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_002211738.1\|2359917_2361156_-\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
WP_000255944.1\|2361225_2362248_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|2362247_2363027_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215632.1\|2363194_2363455_-	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_071525537.1\|2363754_2364504_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-54	48.5
WP_002211736.1\|2364479_2364926_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_002215636.1\|2365604_2365994_+	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_002215638.1\|2365997_2366216_+	hypothetical protein	NA	NA	NA	NA
WP_002211732.1\|2366264_2366828_+	hypothetical protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002211731.1\|2367251_2367461_+	hypothetical protein	NA	NA	NA	NA
WP_002215644.1\|2367457_2367733_-	hypothetical protein	NA	NA	NA	NA
WP_002430108.1\|2367978_2368176_+	hypothetical protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002211730.1\|2368206_2368719_+	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002211729.1\|2368703_2369162_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211727.1\|2369707_2370421_+	hypothetical protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211725.1\|2370877_2371513_+	hypothetical protein	I6S676	Salmonella_phage	7.2e-87	71.4
WP_002211724.1\|2371543_2371993_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_002211723.1\|2371996_2372581_+	hypothetical protein	A0A0R6PHH0	Moraxella_phage	4.8e-69	70.7
WP_002209743.1\|2372628_2373837_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211722.1\|2373841_2374816_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.3e-153	81.1
WP_002228445.1\|2374815_2375544_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_002228446.1\|2375562_2376204_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_002211721.1\|2376204_2377317_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
WP_002211720.1\|2377438_2378212_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211719.1\|2378225_2379431_+	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
WP_002211718.1\|2379478_2379961_+	hypothetical protein	G8C7P9	Escherichia_phage	6.4e-27	46.1
WP_002211717.1\|2379957_2380212_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211716.1\|2380213_2380564_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211715.1\|2380565_2381150_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|2381146_2381554_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|2381619_2382540_+\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|2382552_2382864_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|2382911_2383172_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_002211711.1\|2383172_2386676_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	5.2e-118	33.2
WP_002211710.1\|2386678_2387020_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002213759.1\|2387324_2387783_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211709.1\|2387903_2388656_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_002211708.1\|2388658_2389369_+	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211707.1\|2389629_2390262_+	hypothetical protein	NA	NA	NA	NA
WP_002211706.1\|2390340_2390772_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211705.1\|2390895_2391063_+	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211704.1\|2391136_2392144_+	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002214482.1\|2392242_2392794_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211701.1\|2392936_2393152_+	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|2393207_2393828_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002359202.1\|2394002_2394224_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|2394399_2397603_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211697.1\|2397602_2398601_+	hypothetical protein	NA	NA	NA	NA
WP_002211696.1\|2398617_2399535_+	hypothetical protein	NA	NA	NA	NA
WP_097608205.1\|2399596_2399965_+\|tail	phage tail protein	B6SCW7	Bacteriophage	5.0e-08	42.0
WP_002209743.1\|2400185_2401394_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002214492.1\|2401698_2402871_-	MFS transporter	NA	NA	NA	NA
WP_002211693.1\|2402874_2404074_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	2.4e-38	29.6
WP_002211692.1\|2404090_2404831_-	hypothetical protein	NA	NA	NA	NA
WP_002214494.1\|2405922_2406279_+	hypothetical protein	NA	NA	NA	NA
WP_002227934.1\|2406695_2407226_-	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_002211689.1\|2407461_2409036_-	sodium/proton antiporter NhaB	NA	NA	NA	NA
WP_002211688.1\|2409279_2409999_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_002211687.1\|2410216_2411752_-	SpoVR family protein	NA	NA	NA	NA
WP_002211686.1\|2412216_2413521_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_002216508.1\|2413536_2414739_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	7.6e-29	29.1
WP_002211685.1\|2415003_2415873_-	pirin family protein	NA	NA	NA	NA
WP_002211684.1\|2416070_2416976_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211683.1\|2417010_2418129_-	DMT family transporter	NA	NA	NA	NA
WP_002216501.1\|2418236_2419511_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.5e-11	37.1
WP_002211681.1\|2419660_2421595_-	protein kinase YeaG	NA	NA	NA	NA
WP_002430110.1\|2422038_2422788_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_002224141.1\|2424050_2425046_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002211677.1\|2425393_2425807_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_002217933.1\|2425877_2426150_+	YeaC family protein	NA	NA	NA	NA
WP_002211676.1\|2426283_2426931_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.8e-21	33.0
WP_002211675.1\|2426945_2427962_-	asparaginase	NA	NA	NA	NA
WP_015683944.1\|2430092_2430644_+	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_002211671.1\|2430868_2431915_+	selenide, water dikinase SelD	NA	NA	NA	NA
WP_002211670.1\|2431976_2433902_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.2e-37	30.4
WP_002211669.1\|2433898_2434189_+	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_002211668.1\|2434201_2434588_-	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA
WP_002211667.1\|2434685_2435492_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_015683945.1\|2436301_2437162_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002209743.1\|2438033_2439242_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210667.1\|2439204_2440074_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	5.5e-13	37.3
WP_002210666.1\|2440157_2440622_-	YchJ family protein	NA	NA	NA	NA
WP_002210665.1\|2441955_2442972_+	two-component system response regulator RssB	NA	NA	NA	NA
WP_002210664.1\|2443278_2444625_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-81	38.3
WP_002210661.1\|2445059_2445458_-	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA
WP_002210659.1\|2446207_2446798_+	thymidine kinase	A0A1Z1LYD5	Serratia_phage	1.5e-54	55.8
WP_000255944.1\|2447944_2448967_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
2463214:2463326	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2690469 : 2746283

uncultured_virus(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210913.1\|2690469_2691585_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_002210914.1\|2691642_2692269_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_002210915.1\|2692329_2693700_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.0e-110	45.8
WP_002210916.1\|2693887_2694511_+	porin family protein	NA	NA	NA	NA
WP_002210917.1\|2694721_2695393_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_002210918.1\|2695398_2696853_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_002210919.1\|2696936_2698058_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002210920.1\|2698290_2699526_-	peptidase T	NA	NA	NA	NA
WP_002210921.1\|2699855_2700692_-	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	2.6e-20	34.0
WP_002210922.1\|2701674_2702922_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_015683959.1\|2702921_2703626_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	2.4e-35	42.8
WP_002222341.1\|2703618_2704821_-	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_002210924.1\|2705090_2708537_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_002210925.1\|2708775_2709315_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|2709644_2710853_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002213101.1\|2710948_2711362_-	hypothetical protein	NA	NA	NA	NA
WP_002215856.1\|2711369_2711939_-	hypothetical protein	NA	NA	NA	NA
WP_002213097.1\|2712476_2713781_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002213095.1\|2714155_2714698_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002215854.1\|2714825_2715845_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_002213090.1\|2715927_2716794_-	thiamine kinase	NA	NA	NA	NA
WP_002213089.1\|2716774_2717350_-	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_002213088.1\|2717390_2717780_-	YcfL family protein	NA	NA	NA	NA
WP_002213087.1\|2717814_2718168_-	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_002215853.1\|2718341_2719160_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_002213759.1\|2719602_2720061_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002213085.1\|2720250_2721684_-	PTS glucose transporter subunit IIBC	NA	NA	NA	NA
WP_015683960.1\|2721989_2722799_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_002213083.1\|2722813_2723836_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_002213082.1\|2723835_2724474_-	dTMP kinase	Q2Z0N0	Pseudomonas_phage	4.6e-25	36.1
WP_002217396.1\|2724463_2725489_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_002213080.1\|2725777_2726584_-	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_002213775.1\|2726999_2727458_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213079.1\|2727657_2728899_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_044023364.1\|2728964_2729231_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.1e-09	45.6
WP_002210934.1\|2730133_2731063_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002210933.1\|2731100_2732051_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_002210932.1\|2732057_2733092_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_002210931.1\|2733125_2733293_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_002210930.1\|2733305_2733830_-	23S rRNA accumulation protein YceD	NA	NA	NA	NA
WP_002210928.1\|2733971_2734568_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002213759.1\|2734722_2735181_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210927.1\|2735400_2736363_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_002354074.1\|2736946_2740603_+	ribonuclease E	NA	NA	NA	NA
WP_002209743.1\|2740698_2741907_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002213107.1\|2742183_2742471_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_002213109.1\|2742705_2743752_+	dihydroorotase	NA	NA	NA	NA
WP_002213110.1\|2744064_2744310_+	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.6e-13	51.3
WP_002217041.1\|2744815_2745112_+	biofilm formation regulator BssS	NA	NA	NA	NA
WP_002209743.1\|2745074_2746283_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_11

3223178 : 3292913

Escherichia_phage(28.57%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032465663.1\|3223178_3224009_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_002209726.1\|3224059_3225070_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002209725.1\|3225239_3226367_-	4-phosphoerythronate dehydrogenase PdxB	A0A285PXZ1	Cedratvirus	6.1e-20	27.9
WP_002209724.1\|3226413_3227199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002209722.1\|3227424_3228342_+	DMT family transporter	NA	NA	NA	NA
WP_002209721.1\|3228626_3229664_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_002209720.1\|3230005_3230536_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002216161.1\|3231323_3232019_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_002209716.1\|3233822_3235892_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002209715.1\|3236069_3236348_-	YfcL family protein	NA	NA	NA	NA
WP_002209714.1\|3236405_3236948_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_002209713.1\|3237047_3237854_-	TSUP family transporter	NA	NA	NA	NA
WP_002225365.1\|3237857_3238685_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_002209711.1\|3238690_3239776_-	chorismate synthase	A0A291AU41	Pandoravirus	2.7e-89	47.4
WP_002209710.1\|3239852_3240785_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002227846.1\|3241154_3241685_+	endonuclease SmrB	NA	NA	NA	NA
WP_002209707.1\|3242086_3242578_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_002209705.1\|3243147_3245472_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_002209704.1\|3245471_3246782_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_002227845.1\|3247068_3247365_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_002209702.1\|3247778_3249044_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_002209701.1\|3249149_3249914_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_002209700.1\|3249949_3251176_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_002214855.1\|3251175_3251688_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_002209699.1\|3251684_3252251_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_002209698.1\|3252247_3254218_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_002209697.1\|3254214_3254709_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_002209696.1\|3254705_3255008_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_002209695.1\|3255004_3255742_-	heme ABC transporter permease	NA	NA	NA	NA
WP_002209694.1\|3255804_3256464_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_002209693.1\|3256433_3257090_-	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A1V0SE00	Indivirus	4.8e-09	24.7
WP_002209692.1\|3257534_3258002_-	hypothetical protein	NA	NA	NA	NA
WP_002209691.1\|3258617_3259160_+	LemA family protein	NA	NA	NA	NA
WP_002209690.1\|3259164_3261204_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_002209688.1\|3261579_3261921_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_002209687.1\|3261995_3262343_-	hypothetical protein	NA	NA	NA	NA
WP_002209686.1\|3262367_3262847_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002209685.1\|3262943_3263750_-	ImpE family protein	NA	NA	NA	NA
WP_002354537.1\|3263769_3264612_-	TagK domain-containing protein	NA	NA	NA	NA
WP_002209684.1\|3264617_3264878_-	hypothetical protein	NA	NA	NA	NA
WP_002214843.1\|3267869_3271697_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002209681.1\|3271705_3272542_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_001297096.1\|3272557_3273337_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3273336_3274359_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002211571.1\|3275037_3276387_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002211572.1\|3276390_3276930_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211573.1\|3277203_3277689_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002211574.1\|3278014_3279517_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211575.1\|3279540_3280065_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002211576.1\|3280169_3280778_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002211577.1\|3280762_3281953_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002209743.1\|3281977_3283186_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002215157.1\|3283207_3284758_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002211579.1\|3284885_3285647_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002211580.1\|3285803_3286349_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002215317.1\|3286549_3289225_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.0e-81	32.3
WP_002211582.1\|3290007_3291888_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211583.1\|3291887_3292913_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_12

3827174 : 3898147

Bacillus_virus(18.75%)

transposase,plate,tRNA,integrase

attL 3818548:3818564|attR 3846605:3846621

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3818548:3818564	attL	NA	NA	NA	NA
WP_002213759.1\|3827174_3827633_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_000255944.1\|3827743_3828766_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|3828765_3829545_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002209315.1\|3829595_3830705_-	histidine kinase	A0A2H4J2R8	uncultured_Caudovirales_phage	1.5e-143	67.9
WP_002209314.1\|3830697_3832608_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_002209313.1\|3832761_3834021_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.8e-82	42.7
WP_002223173.1\|3834408_3835485_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_002209310.1\|3836859_3838371_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	5.4e-48	37.7
WP_002209309.1\|3838521_3838971_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_002209307.1\|3838983_3841881_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.2e-141	36.7
WP_002223170.1\|3842023_3842527_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002209303.1\|3843033_3843465_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_002209302.1\|3843676_3844684_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_002209301.1\|3844990_3845449_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_002209300.1\|3847750_3848800_+	ABC transporter permease	NA	NA	NA	NA
3846605:3846621	attR	NA	NA	NA	NA
WP_002209299.1\|3848818_3849655_+	ABC transporter permease	NA	NA	NA	NA
WP_002209298.1\|3849647_3850526_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-10	27.9
WP_002209297.1\|3850512_3851229_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-21	33.9
WP_015684021.1\|3851662_3853801_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	5.7e-269	65.1
WP_025470743.1\|3853977_3854442_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	K4F9T1	Cronobacter_phage	9.4e-52	58.5
WP_002209293.1\|3854769_3855495_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA
WP_002209292.1\|3855495_3855972_+	phosphonate C-P lyase system protein PhnG	NA	NA	NA	NA
WP_002209291.1\|3855971_3856598_+	phosphonate C-P lyase system protein PhnH	NA	NA	NA	NA
WP_002209290.1\|3856597_3857776_+	carbon-phosphorus lyase complex subunit PhnI	NA	NA	NA	NA
WP_002209289.1\|3857768_3858650_+	alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ	NA	NA	NA	NA
WP_002209288.1\|3858649_3859441_+	phosphonate C-P lyase system protein PhnK	G3M9Y6	Bacillus_virus	7.0e-15	27.7
WP_002209287.1\|3859829_3860549_+	phosphonate C-P lyase system protein PhnL	G9BWD6	Planktothrix_phage	5.0e-20	34.9
WP_002209286.1\|3860545_3861682_+	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA
WP_002209285.1\|3861681_3862263_+	ribose 1,5-bisphosphokinase	NA	NA	NA	NA
WP_002209284.1\|3862253_3863006_+	phosphonate metabolism protein PhnP	NA	NA	NA	NA
WP_002209283.1\|3863018_3863657_-	hypothetical protein	NA	NA	NA	NA
WP_002209282.1\|3863808_3864252_-	YhbP family protein	NA	NA	NA	NA
WP_002209281.1\|3864350_3865517_-	alginate lyase family protein	NA	NA	NA	NA
WP_002209280.1\|3865531_3866626_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	2.1e-25	32.0
WP_002209279.1\|3866637_3867477_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002209278.1\|3867495_3868380_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_002209277.1\|3868387_3869701_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209276.1\|3870261_3871485_+	alginate lyase family protein	NA	NA	NA	NA
WP_002209275.1\|3871508_3873527_+	alginate lyase	NA	NA	NA	NA
WP_002209274.1\|3873757_3874045_+	GIY-YIG nuclease family protein	F2NZ06	Diadromus_pulchellus_ascovirus	9.6e-15	54.1
WP_002209273.1\|3874219_3874726_-	N-acetyltransferase	NA	NA	NA	NA
WP_002209272.1\|3874719_3875241_-	SCP2 domain-containing protein	NA	NA	NA	NA
WP_002209270.1\|3875556_3876552_+	U32 family peptidase	NA	NA	NA	NA
WP_002209269.1\|3876563_3877442_+	U32 family peptidase	NA	NA	NA	NA
WP_002209268.1\|3877582_3878989_-	TolC family protein	NA	NA	NA	NA
WP_002209267.1\|3878990_3882116_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002209266.1\|3882119_3883280_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002214817.1\|3883787_3884843_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_002209263.1\|3885097_3885409_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002214818.1\|3885432_3885801_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002209261.1\|3886036_3888031_-	DEAD/DEAH family ATP-dependent RNA helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	1.6e-52	31.3
WP_096335046.1\|3888020_3888101_-	protein YrbN	NA	NA	NA	NA
WP_002209260.1\|3888217_3889102_-	lipoprotein NlpI	NA	NA	NA	NA
WP_002209259.1\|3889226_3891344_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_100067904.1\|3891610_3892965_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002228704.1\|3893015_3893759_+	type VI secretion protein ImpG	NA	NA	NA	NA
WP_002213885.1\|3893722_3894811_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002212103.1\|3894936_3896253_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_002212104.1\|3896252_3896798_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002212105.1\|3896800_3898147_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_13

4017700 : 4078328

uncultured_Mediterranean_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210100.1\|4017700_4019041_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_011055205.1\|4019289_4019934_+	hypothetical protein	A0A1B0VBK8	Salmonella_phage	3.4e-52	49.0
WP_002210102.1\|4020141_4020528_+	cytochrome b562	NA	NA	NA	NA
WP_002210103.1\|4020759_4021170_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_002210104.1\|4021522_4023190_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_002215779.1\|4023284_4024700_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_002210106.1\|4025110_4026064_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_002210107.1\|4026297_4026774_-	hypothetical protein	NA	NA	NA	NA
WP_002210109.1\|4027072_4027459_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_002210110.1\|4027596_4028061_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210111.1\|4028072_4029008_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210112.1\|4029345_4029618_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210113.1\|4029614_4030469_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002213952.1\|4030774_4031257_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210115.1\|4031685_4033119_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002210116.1\|4033180_4033906_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_002210117.1\|4033912_4034458_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_002218352.1\|4034441_4035005_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002228203.1\|4035001_4035565_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002210119.1\|4035813_4036800_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002210120.1\|4036910_4037885_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210121.1\|4038149_4038968_+	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_002210122.1\|4039185_4039968_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210123.1\|4039972_4040530_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210124.1\|4040542_4041166_+	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210125.1\|4041201_4041504_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210126.1\|4041650_4041905_+	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210127.1\|4042058_4043321_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210128.1\|4043501_4044590_-	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002213775.1\|4044815_4045274_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002218066.1\|4045390_4046764_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002210130.1\|4047034_4047439_-	DUF1043 family protein	NA	NA	NA	NA
WP_002210131.1\|4047662_4048790_+	cell division protein ZapE	NA	NA	NA	NA
WP_002210132.1\|4049103_4049532_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210133.1\|4049546_4049939_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_002230558.1\|4049935_4050133_-	hypothetical protein	NA	NA	NA	NA
WP_002210135.1\|4050312_4050954_+	stringent starvation protein A	NA	NA	NA	NA
WP_002216203.1\|4050959_4051475_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6
WP_002210137.1\|4051627_4052113_-	hypothetical protein	NA	NA	NA	NA
WP_002210138.1\|4052553_4053972_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002228691.1\|4053981_4058439_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_002210140.1\|4059261_4060185_+	TIGR01212 family radical SAM protein	NA	NA	NA	NA
WP_002210142.1\|4060448_4062785_+	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	9.9e-41	30.4
WP_002210143.1\|4063026_4063680_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_002210144.1\|4063676_4064402_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_002210145.1\|4064608_4065184_-	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_002210146.1\|4065194_4065785_-	DnaA initiator-associating protein DiaA	A0A067XQR2	Caulobacter_phage	3.2e-12	32.0
WP_002210147.1\|4066055_4066409_-	YraN family protein	NA	NA	NA	NA
WP_002228200.1\|4066492_4068466_-	penicillin-binding protein activator	NA	NA	NA	NA
WP_002210149.1\|4068528_4069428_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.0e-49	44.4
WP_002210150.1\|4070364_4071069_-	pirin family protein	NA	NA	NA	NA
WP_002210151.1\|4071330_4072224_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000255944.1\|4074084_4075107_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002210152.1\|4075163_4075865_+	esterase	NA	NA	NA	NA
WP_002210153.1\|4076231_4076624_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_002430134.1\|4076632_4076950_+	primosomal replication protein N	NA	NA	NA	NA
WP_002210155.1\|4076954_4077182_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_002210156.1\|4077221_4077674_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_002213775.1\|4077869_4078328_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017154.1|WP_002214494.1|2405922_2406279_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017154.1|WP_002214494.1|2405922_2406279_+|hypothetical-protein

2405922_2406279_+

118 aa aa

2349311-2448967

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017154_3	TypeI-F	3.7\|2769197\|32\|NC_017154\|CRISPRCasFinder,CRT,PILER-CR	2769197-2769228	32	2371632-2371663	0
NC_017154_4	Orphan	4.1\|3114417\|32\|NC_017154\|CRISPRCasFinder,CRT	3114417-3114448	32	2377229-2377198	0

1. spacer 3.7|2769197|32|NC_017154|CRISPRCasFinder,CRT,PILER-CR matches to NC_017154 position: 2371632-2371663, mismatch: 0

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
aaaaagaatttgggattaaagttacccatcag	Protospacer
********************************

2. spacer 4.1|3114417|32|NC_017154|CRISPRCasFinder,CRT matches to NC_017154 position: 2377229-2377198, mismatch: 0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. NC_017155

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

86 : 64180

Salmonella_phage(92.06%)

transposase,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|86_1109_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|1108_1888_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002211769.1\|2021_2630_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_002211770.1\|2931_5820_-\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211771.1\|5900_6479_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8
WP_002214118.1\|6535_11167_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.6
WP_002211773.1\|11188_11776_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002211774.1\|11763_12561_-\|tail	tail protein	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211775.1\|12553_13252_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	7.1e-136	99.1
WP_000440566.1\|13341_13677_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_002211776.1\|13718_18296_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	90.5
WP_000952684.1\|18303_18528_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|18653_18971_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002211778.1\|19030_19777_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_002211779.1\|19851_20235_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211780.1\|20236_20710_-	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_001027662.1\|20700_21045_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211781.1\|21142_21976_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_002211782.1\|21975_22410_-	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211783.1\|22453_23116_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211784.1\|23190_24066_-	hypothetical protein	J9Q710	Salmonella_phage	8.5e-163	99.7
WP_002211785.1\|24092_24926_-	hypothetical protein	J9Q7F4	Salmonella_phage	5.8e-137	91.3
WP_014462191.1\|24948_26523_-	hypothetical protein	J9Q7R1	Salmonella_phage	1.6e-300	99.0
WP_002211787.1\|26556_27813_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_002211788.1\|27815_28457_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_000176291.1\|28652_28919_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211789.1\|28928_29819_-	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_002211790.1\|29824_30079_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211791.1\|30071_30710_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_014462192.1\|30706_31375_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.2e-113	98.2
WP_002228791.1\|31374_32073_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	9.6e-125	98.7
WP_002211794.1\|32137_33697_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.1e-293	99.0
WP_044023438.1\|33699_33978_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.9e-40	96.7
WP_002211796.1\|34037_34460_+	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214134.1\|34464_34992_+	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211799.1\|35314_35965_+	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214137.1\|36049_36277_+	hypothetical protein	NA	NA	NA	NA
WP_002211801.1\|36915_37398_-	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002211802.1\|37603_37885_-	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
WP_002213759.1\|38084_38543_-\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002214145.1\|38751_39321_-	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
WP_002213303.1\|39333_40080_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_038918515.1\|40069_40429_-	hypothetical protein	J9Q741	Salmonella_phage	5.2e-58	100.0
WP_002213300.1\|42215_43301_-	exonuclease	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002213298.1\|43716_44739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002214160.1\|45098_45743_-	hypothetical protein	J9Q739	Salmonella_phage	1.8e-122	98.1
WP_002214164.1\|46487_47552_+	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.6
WP_002222711.1\|48120_48333_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|48332_48668_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|48664_48844_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|48884_49160_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002222869.1\|49227_49638_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002222868.1\|49621_49993_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|50146_50977_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002213439.1\|50980_51181_-	hypothetical protein	J9Q6J0	Salmonella_phage	1.1e-25	97.0
WP_161597819.1\|51271_52303_-	recombinase	J9Q736	Salmonella_phage	6.9e-196	99.1
WP_000920226.1\|52350_52617_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_079993611.1\|52616_53555_-	exonuclease	J9Q7S6	Salmonella_phage	2.2e-177	99.0
WP_002213132.1\|53619_54648_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002213135.1\|54767_55199_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002215095.1\|55419_55671_+	hypothetical protein	NA	NA	NA	NA
WP_002213141.1\|55743_56307_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.2e-63	64.6
WP_002425587.1\|56336_56762_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-72	100.0
WP_002221186.1\|56776_60301_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.2
WP_002211767.1\|60481_61717_-	AAA domain-containing protein	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_002211766.1\|61813_64180_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_017153

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6364

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213403.1\|1054_1447_-	YopE transcriptional regulator YerA	NA	NA	NA	NA
WP_002229754.1\|1640_2300_+	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA
WP_002213360.1\|2439_2739_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002224342.1\|2731_2974_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_154020274.1\|3839_4076_-	hypothetical protein	NA	NA	NA	NA
WP_002213354.1\|4235_5201_-	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	3.1e-89	56.6
WP_002220902.1\|5197_6364_-	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3

DBSCAN-SWA_2

10650 : 66067

Enterobacteria_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014462177.1\|10650_11619_+\|protease	T3SS effector cysteine protease YopT	NA	NA	NA	NA
WP_002213004.1\|11618_12017_+	type III secretion system chaperone SycT	NA	NA	NA	NA
WP_002393889.1\|12790_13141_+	hypothetical protein	NA	NA	NA	NA
WP_116442925.1\|13889_14135_+	hypothetical protein	NA	NA	NA	NA
WP_002222517.1\|14376_15669_-	T3SS effector E3 ubiquitin ligase YopM	NA	NA	NA	NA
WP_002229781.1\|15999_16209_-	hypothetical protein	NA	NA	NA	NA
WP_002212987.1\|17334_18255_-	type III secretion system translocon subunit YopD	NA	NA	NA	NA
WP_002212985.1\|18273_19479_-	type III secretion system translocon subunit YopB	NA	NA	NA	NA
WP_002222758.1\|19456_19963_-	type III secretion system chaperone LcrH	NA	NA	NA	NA
WP_002212981.1\|19975_20956_-	type III secretion system protein LcrV	NA	NA	NA	NA
WP_002212973.1\|20957_21245_-	type III secretion protein LcrG	NA	NA	NA	NA
WP_002220918.1\|21286_21727_-	type III secretion system regulator LcrR	NA	NA	NA	NA
WP_002212971.1\|21723_23838_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_002229791.1\|23824_24169_-	type III secretion system chaperone YscY	NA	NA	NA	NA
WP_002212969.1\|24165_24534_-	type III secretion system protein YscX	NA	NA	NA	NA
WP_002229794.1\|24530_24902_-	type III secretion chaperone SycN	NA	NA	NA	NA
WP_002212965.1\|24888_25167_-	type III secretion system gatekeeper subunit TyeA	NA	NA	NA	NA
WP_002212958.1\|25147_26029_-	type III secretion system gatekeeper subunit YopN	NA	NA	NA	NA
WP_002212955.1\|26226_27546_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA
WP_002212952.1\|27542_28007_+	type III secretion system central stalk protein YscO	NA	NA	NA	NA
WP_002212950.1\|28006_29374_+	type III secretion system needle length determinant	NA	NA	NA	NA
WP_002212948.1\|29370_30294_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA
WP_002212947.1\|30290_30944_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA
WP_002212945.1\|30945_31212_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA
WP_002212938.1\|31208_31994_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA
WP_002212936.1\|31993_33058_+	type III secretion system export apparatus switch protein YscU	NA	NA	NA	NA
WP_002222527.1\|33633_34029_+	type III secretion system chaperone YscW	NA	NA	NA	NA
WP_002212931.1\|34152_34968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002229797.1\|35046_35145_+	type III secretion system protein YscA	NA	NA	NA	NA
WP_002212925.1\|35370_35784_+	type III secretion system chaperone YscB	NA	NA	NA	NA
WP_002212919.1\|37610_38870_+	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA
WP_002212917.1\|38866_39067_+	EscE/YscE/SsaE family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_002212916.1\|39067_39331_+	type III secretion system needle filament subunit SctF	NA	NA	NA	NA
WP_002229801.1\|39332_39680_+	YscG family type III secretion protein	NA	NA	NA	NA
WP_002212915.1\|39676_40174_+	YopR family type III secretion effector	NA	NA	NA	NA
WP_002212914.1\|40174_40522_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_002212912.1\|40528_41263_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_002361471.1\|41262_41892_+	type III secretion system sorting platform protein YscK	NA	NA	NA	NA
WP_002212909.1\|41870_42503_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA
WP_002212907.1\|42727_43075_+	type III secretion system exported negative regulator LcrQ/YscM1	NA	NA	NA	NA
WP_002213278.1\|45163_46570_-	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA
WP_002213287.1\|48252_49119_-	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA
WP_002213290.1\|49514_51713_-	T3SS effector protein kinase YopO/YpkA	NA	NA	NA	NA
WP_002229809.1\|51720_52170_-	hypothetical protein	NA	NA	NA	NA
WP_002213291.1\|52915_53155_-	hypothetical protein	NA	NA	NA	NA
WP_002213292.1\|54327_55206_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_002233140.1\|55186_55261_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_002229817.1\|55502_55757_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_002233137.1\|55894_56143_-	phospholipase	A0A1B2LRT6	Wolbachia_phage	9.2e-06	47.1
WP_002213294.1\|56559_56967_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.7e-07	29.2
WP_002213244.1\|56990_57308_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|57479_57938_-	hypothetical protein	NA	NA	NA	NA
WP_042469136.1\|58006_58276_+\|transposase	transposase	NA	NA	NA	NA
WP_002213256.1\|60887_63203_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.0e-279	51.6
WP_002213258.1\|63366_63918_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3
WP_002224338.1\|63936_64401_+	hypothetical protein	NA	NA	NA	NA
WP_002229829.1\|64539_64869_+	hypothetical protein	NA	NA	NA	NA
WP_086016640.1\|64968_66067_+\|transposase	IS3-like element ISYpe1 family transposase	S5WIU1	Leptospira_phage	1.4e-45	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017154

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. NC_017155

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_017153

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection