CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011830	Desulfitobacterium hafniense DCB-2, complete sequence	5 crisprs	cas14k,WYL,csa3,DEDDh,RT,cas14j,cas5,cas8c,cas7b,cas3HD,cas4,cas1,cas2,DinG,cas3,cas8b1,cas6	0	15	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011830_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011830_1

2346028-2349229

TypeI

Consensus_repeat	Method
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	PILER-CR
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CRISPRCasFinder
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CRT

47 spacers

cas5,cas8c,cas7b,cas3HD,cas4,cas1

The CRISPR arrays of NC_011830_1

>merge|NC_011830|1|2346028-2349229|PILER-CR,CRISPRCasFinder,CRT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAATAGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGGGCATGTCTGAGGACAACCAAAAGCTAATGGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTATTTCGGACGGTAGCATGACAACTACCGCTAAGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCTGTCCTGAAGTAGTCCAGGTCATCACCGCTGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATGCTTTGCACCTCCTCCCTACAATCCAAATGTGCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCGTATTCCACGAGGAAGTGACTGACTCCATGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGCAGTACATAAAGGAGTGGCATGACTATGTAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATGCTGATAACCCGGCGAATGGAGATACCCTCACCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCCACCAGTGCGGCCACATCGGCCTTGACCTCATCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAGGCAGATCGATGTAAATACCGCCACCTGGGGATGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTTAAATGAGATGACGAATTTTGCAGGCTCGACTCCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGCGGGCAACGGCATATTCTATGATAGAGTAGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAAACGGGTTAGCTGTATCCCAATGCTCCACAATGTTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAAGCGAATCATTTTGATTGGTTAATAATTCAACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAAGCGAATCATTTTGATTGGTTAATAATTCAACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCATGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCCGGCAGTCCGCTGGGGCTTATCATCCTCATGTCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGGCCCTCGGCCACTATACTTTAACCGAACTGGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCCACTGCTAAGATATACTTTAAAAATCAATGGGTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAGCTTTTCCTCAACGTCTAATTTTAAAATTGGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTAAGTGCGACAACACAATGAAGGGTTTCATTTTTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATTATACTTCAGGAAATCTTCCGAATCCTCTATCAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATATTGTCTTCGTTGGGACAACTGCCAATAATTATGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAATGGAAATATCAACGTTGATTATGAGTGGGAATGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCCACATGATCAGCGAACAGGTCTACAGCTGGAACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTTTGGTACAATTGGATTCTTTCTAGCAATGTCAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATGAAGCTAAAGTGAAGGATTTATGGAACCATACTCCTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTTTAACTCAGGCTATGTTGATTACCTGGATGCCAACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATGGGGGAACAGCAAACGATGGGCAAAATCAGCTACGTCACTCCTCGTATGAGGAGTGTGGATTGAAATAGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTAAAGTACTTTAATAGATGGCTTAAGTCAAATAGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCCTCTCGGGTGGACCGACTTAGATGCCTAGGGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAAGTCACTCCTCGTGTGAGGAGTGTGGATTGAAATTCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAAGTCACTCCTCGTATGGGGAGTGTGGATTGAAATAAGGCCATTAACGCGAGTGGAAAGCTTACGGATTAGTCACTCCTCGTGTGAGGAGTATGGATTGAAATAACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATCGTCAATCCTCGTATGAGGAGTGTGGATTGAAAT

>NC_011830|1|1|2346028-2349229|PILER-CR
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGGCATGTCTGAGGACAACCAAAAGCTAATGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCTGTCCTGAAGTAGTCCAGGTCATCACCGCTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGCTTTGCACCTCCTCCCTACAATCCAAATGTGC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCGTATTCCACGAGGAAGTGACTGACTCCATGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCAGTACATAAAGGAGTGGCATGACTATGTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GCTGATAACCCGGCGAATGGAGATACCCTCACC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCACCAGTGCGGCCACATCGGCCTTGACCTCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGCAGATCGATGTAAATACCGCCACCTGGGGAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTAAATGAGATGACGAATTTTGCAGGCTCGACTCC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCGGGCAACGGCATATTCTATGATAGAGTAGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAACGGGTTAGCTGTATCCCAATGCTCCACAATGTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCGGCAGTCCGCTGGGGCTTATCATCCTCATGTC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCCCTCGGCCACTATACTTTAACCGAACTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACTGCTAAGATATACTTTAAAAATCAATGGGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGCTTTTCCTCAACGTCTAATTTTAAAATTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAGTGCGACAACACAATGAAGGGTTTCATTTTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATTATACTTCAGGAAATCTTCCGAATCCTCTATCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATATTGTCTTCGTTGGGACAACTGCCAATAATTATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AATGGAAATATCAACGTTGATTATGAGTGGGAAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACATGATCAGCGAACAGGTCTACAGCTGGAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTGGTACAATTGGATTCTTTCTAGCAATGTCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GAAGCTAAAGTGAAGGATTTATGGAACCATACTCCT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTAACTCAGGCTATGTTGATTACCTGGATGCCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GGGGGAACAGCAAACGATGGGCAAAATCAGCTAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAAGTACTTTAATAGATGGCTTAAGTCAAATAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCTCTCGGGTGGACCGACTTAGATGCCTAGGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA
GTCACTCCTCGTGTGAGGAGTGTGGATTGAAAT	TCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAA
GTCACTCCTCGTATGGGGAGTGTGGATTGAAAT	AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA
GTCACTCCTCGTGTGAGGAGTATGGATTGAAAT	AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC
GTCAATCCTCGTATGAGGAGTGTGGATTGAAAT

>NC_011830|1|1|2346028-2349229|CRISPRCasFinder
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGGCATGTCTGAGGACAACCAAAAGCTAATGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCTGTCCTGAAGTAGTCCAGGTCATCACCGCTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGCTTTGCACCTCCTCCCTACAATCCAAATGTGC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCGTATTCCACGAGGAAGTGACTGACTCCATGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCAGTACATAAAGGAGTGGCATGACTATGTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GCTGATAACCCGGCGAATGGAGATACCCTCACC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCACCAGTGCGGCCACATCGGCCTTGACCTCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGCAGATCGATGTAAATACCGCCACCTGGGGAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTAAATGAGATGACGAATTTTGCAGGCTCGACTCC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCGGGCAACGGCATATTCTATGATAGAGTAGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAACGGGTTAGCTGTATCCCAATGCTCCACAATGTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCGGCAGTCCGCTGGGGCTTATCATCCTCATGTC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCCCTCGGCCACTATACTTTAACCGAACTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACTGCTAAGATATACTTTAAAAATCAATGGGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGCTTTTCCTCAACGTCTAATTTTAAAATTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAGTGCGACAACACAATGAAGGGTTTCATTTTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATTATACTTCAGGAAATCTTCCGAATCCTCTATCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATATTGTCTTCGTTGGGACAACTGCCAATAATTATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AATGGAAATATCAACGTTGATTATGAGTGGGAAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACATGATCAGCGAACAGGTCTACAGCTGGAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTGGTACAATTGGATTCTTTCTAGCAATGTCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GAAGCTAAAGTGAAGGATTTATGGAACCATACTCCT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTAACTCAGGCTATGTTGATTACCTGGATGCCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GGGGGAACAGCAAACGATGGGCAAAATCAGCTAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAAGTACTTTAATAGATGGCTTAAGTCAAATAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCTCTCGGGTGGACCGACTTAGATGCCTAGGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA
GTCACTCCTCGTGTGAGGAGTGTGGATTGAAAT	TCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAA
GTCACTCCTCGTATGGGGAGTGTGGATTGAAAT	AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA
GTCACTCCTCGTGTGAGGAGTATGGATTGAAAT	AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC
GTCAATCCTCGTATGAGGAGTGTGGATTGAAAT

>NC_011830|1|1|2346028-2349229|CRT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGGCATGTCTGAGGACAACCAAAAGCTAATGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCTGTCCTGAAGTAGTCCAGGTCATCACCGCTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGCTTTGCACCTCCTCCCTACAATCCAAATGTGC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCGTATTCCACGAGGAAGTGACTGACTCCATGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCAGTACATAAAGGAGTGGCATGACTATGTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GCTGATAACCCGGCGAATGGAGATACCCTCACC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TCCACCAGTGCGGCCACATCGGCCTTGACCTCATC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGGCAGATCGATGTAAATACCGCCACCTGGGGAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTAAATGAGATGACGAATTTTGCAGGCTCGACTCC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGCGGGCAACGGCATATTCTATGATAGAGTAGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAACGGGTTAGCTGTATCCCAATGCTCCACAATGTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAGCGAATCATTTTGATTGGTTAATAATTCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCGGCAGTCCGCTGGGGCTTATCATCCTCATGTC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCCCTCGGCCACTATACTTTAACCGAACTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACTGCTAAGATATACTTTAAAAATCAATGGGT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGCTTTTCCTCAACGTCTAATTTTAAAATTGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAGTGCGACAACACAATGAAGGGTTTCATTTTT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATTATACTTCAGGAAATCTTCCGAATCCTCTATCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	ATATTGTCTTCGTTGGGACAACTGCCAATAATTATG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AATGGAAATATCAACGTTGATTATGAGTGGGAAT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCACATGATCAGCGAACAGGTCTACAGCTGGAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTGGTACAATTGGATTCTTTCTAGCAATGTCA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GAAGCTAAAGTGAAGGATTTATGGAACCATACTCCT
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TTTAACTCAGGCTATGTTGATTACCTGGATGCCAAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	GGGGGAACAGCAAACGATGGGCAAAATCAGCTAC
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	AGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TAAAGTACTTTAATAGATGGCTTAAGTCAAATAG
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	CCTCTCGGGTGGACCGACTTAGATGCCTAGGGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT	TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA
GTCACTCCTCGTGTGAGGAGTGTGGATTGAAAT	TCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAA
GTCACTCCTCGTATGGGGAGTGTGGATTGAAAT	AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA
GTCACTCCTCGTGTGAGGAGTATGGATTGAAAT	AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC
GTCAATCCTCGTATGAGGAGTGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011830.1\|WP_049769596.1\|2349804_2350344_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_011830.1\|WP_005814285.1\|2342502_2343186_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NC_011830.1\|WP_015943912.1\|2360340_2361372_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011830.1\|WP_015943902.1\|2349306_2349543_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_005814288.1\|2343182_2344136_+\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_011830.1\|WP_015943899.1\|2338451_2339258_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_011830.1\|WP_015943905.1\|2351611_2352982_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143454
NC_011830.1\|WP_005814277.1\|2340684_2341266_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236700
NC_011830.1\|WP_015943897.1\|2334900_2336619_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011830.1\|WP_005814289.1\|2344351_2345833_+\|CZB-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NC_011830.1\|WP_015943910.1\|2357429_2359619_+\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|350688
NC_011830.1\|WP_015943901.1\|2340371_2340698_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_011830.1\|WP_015943904.1\|2350392_2351610_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341468
NC_011830.1\|WP_193345592.1\|2339254_2340226_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_011830.1\|WP_015943908.1\|2354429_2356559_+\|hypothetical-protein	cas8c	mkCas0173_cas8c_CAS-I-C	gnl\|CDD\|177283
NC_011830.1\|WP_015943911.1\|2359672_2360344_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011830.1\|WP_015943898.1\|2336622_2338485_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011830.1\|WP_015943909.1\|2356548_2357433_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_011830.1\|WP_015943907.1\|2353765_2354440_+\|CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011830.1\|WP_011459514.1\|2341357_2342332_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600

Protein	Function_ID	Function_description	E-value
NC_011830.1\|WP_049769596.1\|2349804_2350344_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.19768e-13
NC_011830.1\|WP_005814285.1\|2342502_2343186_+\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.03219e-44
NC_011830.1\|WP_015943912.1\|2360340_2361372_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011830.1\|WP_015943910.1\|2357429_2359619_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.27753e-24
NC_011830.1\|WP_005814288.1\|2343182_2344136_+\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	6.98545e-166
NC_011830.1\|WP_015943899.1\|2338451_2339258_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.00200207
NC_011830.1\|WP_015943905.1\|2351611_2352982_+\|aldehyde-dehydrogenase	gnl\|CDD\|143454	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.	0
NC_011830.1\|WP_005814277.1\|2340684_2341266_+\|hypothetical-protein	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0.00523653
NC_011830.1\|WP_015943897.1\|2334900_2336619_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.0899e-153
NC_011830.1\|WP_005814289.1\|2344351_2345833_+\|CZB-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.18232e-33
NC_011830.1\|WP_015943901.1\|2340371_2340698_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.17066e-19
NC_011830.1\|WP_015943904.1\|2350392_2351610_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341468	cd08189, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domain. Proteins of this family have not been characterized.	0
NC_011830.1\|WP_193345592.1\|2339254_2340226_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.93858e-74
NC_011830.1\|WP_015943908.1\|2354429_2356559_+\|hypothetical-protein	gnl\|CDD\|177283	PHA00451, PHA00451, protein kinase.	0.00746969
NC_011830.1\|WP_015943911.1\|2359672_2360344_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.58108e-31
NC_011830.1\|WP_015943898.1\|2336622_2338485_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_011830.1\|WP_015943909.1\|2356548_2357433_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.20083e-70
NC_011830.1\|WP_015943907.1\|2353765_2354440_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.25434e-23
NC_011830.1\|WP_011459514.1\|2341357_2342332_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.65275e-55

>NC_011830.1|WP_005814289.1|2344351_2345833_+|CZB-domain-containing-protein
MNFFKKAPCEEALCVIKSVEDRLNGLEVELPDVQYPIHQNLVKIFEKLLASEEHMSKSSKKMIGLTSALSNFDVEMTHSSHKLIEFAREMSTISESNLAIVEEISASMSEVNDTIGNTSEVMNSLQESSRALVLKNDESIARIEEIDVLKNDVSKDAALMSEQIKVLVEMAVKVNEIVDGVENIANQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLADSTKTSLGNMRSFVNNIQQAAVSGQSSMENTMNSTAKMHTKLDMISQTIIENVSMLKNTISDVDLITESLGHIKESASQINQAMEASTQDAEKLNLMTQRIQDDATQSADNAKEIARIDDELSGLVREMITALNGGKNAVSNQELLENISKAKAAHANWIKNLSRIVEEMTTYPLQTNSKKCAFGHFYHSMDVSGTVLEDAWRAIDQVHDEFHTSGSKVIEAVKENKPELARNLFLHTKELSQNIFAKLDEVTHIIEGSAAQGVEILRTSKAS
>NC_011830.1|WP_005814288.1|2343182_2344136_+|DUF1848-domain-containing-protein
MIISASRRTDIPAFYSQWLLNRLQEGYVLVPNPRNPSRYSRVELNPQVVDCLVFWTKNPSPMLPRLAEIVALGYPFYFQFTLTPYDRDLEQNLPPKETLLNIFQKLSAMLGPERVVWRYDPVILTPELGLDLEYHLRQFERMAAALAGYTQRCIFSFLDMYPKVGRAMSLALAQEAKEADETAMGRIAEGFSAIARKHDLDLFTCCEPVKLSQYGIKHASCIDQGMIEEILKCKIQVKKDPNQRPSCGCIESVEIGTYDSCPHGCLYCYGTSSPKTVRSNIARHDPKSPVLIGALPQNAIITERKMCSRKDAQLTLF
>NC_011830.1|WP_005814285.1|2342502_2343186_+|DNA-alkylation-repair-protein
MQTEIKKQMQELAEEEYRVFSSGLLPNIGNILGVRLPLLRKMAKQITKADWREYLKTAREDSFEEIMLQGMVIGCAQCSAPERLAYIQGFVPKIDNWSVCDSFCNGLNFTKENKELVWEFLQPYLRSEREFEIRFGVVMLLTYYSDQEYIKAVLEGLDGIRHEGYYVKMAVAWAISICYIKLPEETLPYLQHNHLDDFTYNKALQKITESYRVDQETKKQIRLMKRR
>NC_011830.1|WP_011459514.1|2341357_2342332_+|D-alanyl-D-alanine-carboxypeptidase
MAQRPRRKKRKSKPPMLLLLLLLVVIAVLGYKYLPESQQLAEKISGDRTGTVSQLKPETRPTSLSVGRLNSSQAILVRLKDQKILMGKGSEEKIYPASLTKIMTAILAIENLPNLQEKIRLSQATFQGLYQANASMTGFQPEEQVSVMDLLYGVMLPSGAESCVGLAERIAGSERKFALLMNQKAAELGMNHTHFENATGLHAENHYTTVKDLAVLLSYALQNDLFREVFTASRHSTPPTNKHPGGITFYSTMFSVLGSSKIAGGEILGGKTGYTDEAGLCLASLAQVGKEQYILITAGAKGNHDSEQYNVSDALAVYNSLGKE
>NC_011830.1|WP_005814277.1|2340684_2341266_+|hypothetical-protein
MSFSKEIREKIRRFAEEQSQHYLEEAEMTYLEKLRRKTGETKSKVTAKLAKLKNRSGTALEAQNDMILYMSDYMNDLIAEGYSEQDAFKQAKEELRFRSETAKSSDLQERFAEYYANMNPADYEAVGLFYAGFLFFGIAIGALTGFISSGGREMFMAGGWIDTLIGAAVGITIGIGLGLISHAIIALKKKLPS
>NC_011830.1|WP_015943901.1|2340371_2340698_+|PadR-family-transcriptional-regulator
MLKGVLDGIVLEIISRGEIYGYEIARQLHAMGFKDLAEATVYALLLRLEKNKLVHITRKPSEMGPPRKFYTLNERGVEELAAYWARWDFLSERIHILRNNGGKSNELQ
>NC_011830.1|WP_193345592.1|2339254_2340226_-|ABC-transporter-ATP-binding-protein
MTHHELTVKSIVYGRKRFLKRWPALLEVSELTKSYHEVRGVKNLSFQVESGTALGLLGPNGAGKTTTIRLLMGFMKPDLGSASIWGLDCWRDRAELKEITGYLPGELHFMEQFTGQEFLDLIEGMHGTQQTIRKRQKDLLRALELDPKQRIRKMSKGMKQKLGIIAALMLDAPVLILDEPSSGLDPLMQKTFIELILEEKKREKTIFMSSHHFAEIERTCERVGMIRDGELLAIQDITQLKQKERQTFDIEVSGEEDAELLRQSGLTLYPLDHLKFTIQVTGEQELLWKTLAQIRVRRFQQGSLELEEAFMHYYHSSLRGDST
>NC_011830.1|WP_015943899.1|2338451_2339258_-|ABC-transporter-permease-subunit
MNRALFRAMIKQNRKKIAKLAAGIVLYETLLTWVYPVIAENSAVTQLTDSIPSAVKTVFGVAEEARVDTFEAFISAQFLARIWAMLMSLYNVETANELLAKLADDGSLALLLSTPVPRGDYLLTQALVLFSGNALLVLATLLGLCGGAYRFGITIDSWRYCRFGLLSLAFYSLIGAYSLFFSALTAQEDLDLTLAAGTTLTFYALDVAGGLSEQHSWLRRLSLFQCYQPQEVLEGTSDPARKIIGLTAGSVILLQLGIYAFNEKDLAI
>NC_011830.1|WP_015943898.1|2336622_2338485_+|ABC-transporter-ATP-binding-protein
MAGGFRTQQPKAPALVNRPGAGNRFVPAAKPKNTKGTLGRIVKIYLRWAKSIFAVILLTAASSLVAVAIPYYVGQTFNTFHIADRSVDTARLVSLLLIILSLYLGNLLLNLLNGTMTLRISQKLVYTLRQEFFAKMQRLPLGFYDTRSHGDTMSRITNDMDNISSTIAQTTTQLIASILTLAGSLAVMLSLNVPLTLVVLLCVPLVFVLTKTIATRSRAYFLAQQGSLGALNGVIEENILGLKMVKAFNRQEEVLRQFQEINQGLRASSYKAQVWSGCMMPLMNVINNLVFAAVAICGGILTLSQGLAVGTVVSFLTYSKQFAHPLNSVAGMFNTIQSALAGAERVFEILDYEEERADEENALEMEHPAGAVTFDEVSFSYDKTQPILKEVSFQVNPGEVVALVGETGAGKTTIVNLLTRFYDADSGEIRIDGVPVTRIKRASLRRCFSVVLQDTSLFSGTIMDNIRYGKEDATEEEVIRAAQIAHAHGFITKLPQGYGTRVSAANDNLSQGQKQLISIARALLCDSPILILDEATSSVDTKTEKDIQKALVSLMQNRTSFLIAHRLSTIRDADRIMVIGEGQILESGNHQSLMEKQGRYYEMVMSQLGSQMAKSFSLKA
>NC_011830.1|WP_015943897.1|2334900_2336619_+|ABC-transporter-ATP-binding-protein
MTLYYNYLGKYKIPFLIAVLCVTLEAVCDLLGPTLMARIINQGIEKGSLAEVYYWGALMLAVTLLGACFAVTRSNLSSYVSQRMGGDLRADLFGKIISFAEQSGDKIDGGSLITRMTNDTSQIVQFVNGMMRIFLKAPLTGIGSVILASWLNFRLSLIIYGVVAVVSLLIYASMKFSYPRFYQLQKAVDRVNLKVQEYLIGIRLVKAFGTYEQETEKFAEANRELMQKGISSQMVITVISPFLTLVVGTGTAAVIFLGSRLFMLDLADLGDMMAFTIYMAQILTSLIMLTTVFTTFVRTKASMERIGEVLDCAEDFPPSGAGRKLQGKITFDKVTFAYPNGSGVPAIRELSFTVNPGGSLAIIGPTGSGKSTIAWLLLRFYDADRGRIMLDDYPIQELGADEIRHNIAIVPQKPLLFSGTVAENLRWGDKQASPEELRQAAEKAQADFIGQMAEGYDSLLGSEGVNLSGGQKQRLSLARAILKKAPILILDDATSALDAVTEAKVRENLKHNDYRQTLVMITQRCGTAMSADQILVMENGRPAGLGSHEELMRTCAIYQDIYHTQLESSREA
>NC_011830.1|WP_015943902.1|2349306_2349543_-|hypothetical-protein
MDKLDIILERLNILDRIESDIKALKADNRETYKKLDKLDEISAKQEMTWQAVKELRDDKTEINELRRRIEILESKIAM
>NC_011830.1|WP_049769596.1|2349804_2350344_+|TetR/AcrR-family-transcriptional-regulator
MRRHILTVAGGLMIEKGVKETSLKDIAQEAGISKGTLYYYYSAKEDIIYDIANHNLKQITDGLLAWIEDANTEVAPEEVLKTVFEQILGAETRGKLHLYLLSDAGTSNTLLKEKFKEQYQEWRKTLQYGLDKILPSQNQKNVMLSYLILAALDGLIIQRLFGTEEIPVQEIVKLLVNAE
>NC_011830.1|WP_015943904.1|2350392_2351610_+|iron-containing-alcohol-dehydrogenase
MNTLYCRLYQRTLQLASYFLPWRKPTLLEGANSLNKLPEVISRKGISKILIVTDQGISSLGLVNSFLQDLDKAGVRYTVYDKTVPNPTLDNIEEALKLYQEQQCEGIVAFGGGSPMDCAKGVGARVANPHKSISQMKGVLKVRRKLPPLFAIPTTAGTGSEATLAAVISDPRNREKYPVNDTALIPHYAVLDPLLTVGLPKHITSTTGLDALTHAVEAYIGRSNTQETTELSRKAVRLIFDNLYIAYSQGENVKARENMLKASYYAGVAFTRAYVGYIHALAHALGGFYGVPHGLANAVILPCVLEYYGEAVHERLAELADVLEMGSPGDSHEQKATLFIEAIKELSKKMNIPRKIDGILAEDIPLLVEHAWKEATPLYPVPRLLSRNDLNNILNLIGSAQKEEV
>NC_011830.1|WP_015943905.1|2351611_2352982_+|aldehyde-dehydrogenase
MPDIKEILVKQKAFFQTGKTKELQFRVDMLNKLRSAIKIHEEEIMAALKADLNKAPFEAYATEVGMVLEELNYTLKHISSWVKPKRVRTPLVHFPSASYLYTEPYGSVLIMSPWNYPFQLALAPLVGAISAGNCAVLKPSEYSANTSAMIERIVKEIFDESFVAVVRGGREANKTLLNEKFDYIFFTGSVGVGKTVMESAARHLTPVTLELGGKSPCIIDDTADLELAAKRIVWGKFLNAGQTCVAPDYLLVHRTVKEKLIQEIKKSITAFYGHDPLGNEDYPKIINQKHFERLLGLLKSGRVVEGGRSDEKTRRIAPTILDDVTWESPVMQEEIFGPLLPVLEFESFDAALAMVNQHPKPLALYLFTRSKDHEAQAISKTSFGGGCINDTIIHLANPNLRFGGVGESGMGQYHGKGSYDTFSHTKSIMKKSNKLDIPLRYPPFRNHLSLLKKLMK
>NC_011830.1|WP_015943907.1|2353765_2354440_+|CRISPR-associated-protein-Cas5
MVRLSYPIAMEIAGNTAMWTRPDSGDCPVSYPAPTYSAVKAIFESVAWGPGVEIIPTKVELCAPIQYHSYCTNYGGPLRSTKSIKEGNNYQLYATVLIDVCYRLYAEVVPYKDKSRLPESAVQWDKKTTSPGHAYQSIFNRRLKRGQCYSIPTLGWKEFTPSYFGEFRDTTQVLSDALPIVIPSMLRRVFAKGYGSPVSYVYDNDLVIRNGVLEYPQRSENYAQ
>NC_011830.1|WP_015943908.1|2354429_2356559_+|hypothetical-protein
MLNELYSLSTAMKSKGISAKEWHREYKSLPKVTAKSPCIRIWLAQDGSICGLESISAELAQSLRKYGNNQGTFPAFNIAPLYRITEEEQLTELEQIEKGTIPLDLDKIKSWCVHDNWKGSIVKKVDRSLHTIPQTLSGLIGNQEQPEGRLISKLIQLASGFRNEPDKSFKSALEKCVFAKLQKQEDIGTLLTVLFHKGNPKKEHNDDTGSISVVLDLFDWQQYGYPVTSQHFTEWLNDMLLKSSSRSASQPSKDVERDAFGIPFINPDEPMPSVKLSGFEVTLRSMFNGQPCQYRYEQIDDGSYPIAMENRSLIKKSLEWAADLEREGITWRKIDKSEIVFAYPSKLLEISPKFVSIFGSGQAENSARAEARFENIAKDFIRTLRGLLPEETPKFIQIFTIRKLDKARSKVIFTRNCSPDQLIQAAEDWQAGCGNIPETELGKRETPFPLQVARIVNNVWKQNGELAQGQTAVERMKYYQGMELLLDPMQENMIGNYLHVTLTHSSGLVSYIGNWVHGGSSCKSKTEEKALEKLKNEAALLLDVLGLLLYKRGERKEKYMENMAYLVGQLLKISDELHTLYCKVVRGGDVPPQLAGSALFAAAGERPYQTIAQLSLRMNPYITWAKHYRFKNISTKDEESWRARWYLNLYEDAANKLLPAMTDSTRFNDFEKAQLFIGYLASFPRRGSSVTVADESDNDNNVGGANYEQ
>NC_011830.1|WP_015943909.1|2356548_2357433_+|type-I-CRISPR-associated-protein-Cas7
MNSEIKRATGLMVIEVVNSNANGDPDRESDPRQRPNGIGEISPVSFKRKLRDLVGDHDSVFYQNLPEVYVKNSDHYCILESRGRDRKSIQSEMSKDIKNFEQKSFLESTFVKKYWDARIFGNTFLEEGANKGFIKTGVVQFGVGTSISPVNIIRHTNTNKAGVQEGKNAGMAPLAFRIVEHGVYCMPFFVNPNYAAKTGCTQEDIDLLKLLIPKAYDLNRSAIRPDVRIRHAWYIEHLNALGSCPDYLLLEALTPKRIGDVTIASKSWADYEDKTDLPEELKAKVSSATDLMLV
>NC_011830.1|WP_015943910.1|2357429_2359619_+|CRISPR-associated-endonuclease-Cas3''
MIYYAHSRKDDIPEQTYAEHVCGVRSWGRDYVQEISCYAKCDNTLLSQIIEKASTIHDLGKLNKKNQDVLAGREQDEKLPVHHWDAGAAYFLRNSHLSVFSAAVIQAHHKGFPDFTVEVERDDAAFRDRAIASEVDKELPELEAIHNNLVDSRFEYDREEIKGDKSVFLRMLLSCLVDADHTDTAIHYRKYPAEMSPVRLRAAERLAQLDRHIAGLKQTGADDARNALRNEMYLACRNADIDAGITSCDSPVGSGKTTAIMAHLLAQAEKRGLRRIFVVLPFTNIIKQSVDIYRKTLVLPGENAEEVVAELHHRADFESKDARHLTALWRAPIIVTTAVAFFETLASNSTAALRRLHELPGSAVFVDESHAALPAKLLPIAWKWINVYAAEWNCYWVLASGSLNRFWTIPEIIGNESFHPVPEIIDDELRKRLAVYENNRISYHCDLFPKGTAELAQWISGFPGPRLVILNTVQSAAVLADYFSEHFGRECVEHLSTALTPNDRSNTLERIKKRLMDKKDTNWTLIATSCIEAGVNLSFRTGFRELGALVSLLQASGRVNREGVLDNAEMWTFCILEDGMLRLNPGLKEAAAVLKRFFEGNSAIVPELSTQSLTDEIALYGLSGKHRNLVTNEKLQNFRKVEEDFKVIDSDTRLVVVDPSMAKRLQYGKVDWKELQKVSVQIAKYKLDELRTPMIMDKIYRWNLEYDGFLGYMAGIVKLKKYSGGAIII
>NC_011830.1|WP_015943911.1|2359672_2360344_+|CRISPR-associated-protein-Cas4
MEYQEDDFLLLSGIQHYVFCKRQWALIHIEQQWQENFRTIEGAILHEKTHDSTIKEKRGALIISRGMGIFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQDNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPRRRTKVILDEEIREEVKRICQEMHELYAKRYTPKVKTTKACRACSLSEICLPKLCKNPSALDYMKKMIAEIEVEP
>NC_011830.1|WP_015943912.1|2360340_2361372_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSPNTYLSLDGENIVILKDDVEALRVPLHNLESIIAFGYTGASPALMGACAKRNISLSFMKSNGKFLGRVVGEVRGNVTLRKAQYRLSDDEATSHRIAKSFILGKVYNSRWVVERATRDHGARLDVEKLKGVCQTLANALRLVENSKDLDQLRGVEGEAAAQYFRVLDDLILQQKEDFYFKCRNKRPPLDNVNAMLSFIYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVFADRFVLSLINRREVNPSGFTRMENGAVVMDDDTRRDILKAWQSRKQEEIKHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK

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Crispr_ID: NC_011830_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011830_2

2361841-2365779

TypeI

Consensus_repeat	Method
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	PILER-CR
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CRISPRCasFinder
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CRT

58 spacers

cas2,cas1,cas4,cas3HD,cas7b,cas8c,cas5

The CRISPR arrays of NC_011830_2

>merge|NC_011830|2|2361841-2365779|PILER-CR,CRISPRCasFinder,CRT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCTATGGGATGGACAGATATAAATTAACCATGTCGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAGCTGAAAATCTATCTGCCGCCCTGACTTATTTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATGTCACTGAATCAGCGGTTACTATCACTGCAGGGGTAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTATTTCGGACGGTAGCATGACAACTACCGCTAAGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAAACGACTGAATACGTAGACACGGCGAAAACGACGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCCGGGGACGTACTGCCAAGCCTTGTTGAAATCTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGACGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTTTTTCTGCACAGCAAGCCACGCATAAAACTCCTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCTGGGGGCTTAGTGATTAAGCCGTCAAGGATAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCGTCAGCGCCTTTGCCGACAGGCTTTCCGATATGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGACCCTCGCTGCCCACCAAGTTGGCCATACGGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTATAATGTTTTTCATTAACTCTATAGGTTTTTCAGAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGTCATTCCACAATAAGCACAGGCATCTCCAAAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATTGTCAGGATTGTACGTTACACACCAATGCCAATGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTAGAATTTGTGGTAACGCCTTTTCTAATCTTTCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATGAATACGCAAAGGTGATTTTTGAATGCGAGAAGGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCGTCCTACCTGATTGAGAAACGCAATATCAAAGAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATGCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATAAAGGCCAACACGATAGCAAACAAGGCGACATGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGCAGCATACTCGGCAATAAGGGACTCAAAGAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCAAAGCCAAACAAACATATACCGGGAATCGGACGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATCAGACTGGCCGAAGAGATGAAGAATCCTATTGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAATCGATTGGTCCATAGAGGCAAAAATCTCTTTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATTTTTACAAACCAGTTGACAATCTCCGCATGATGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGTTGGGACAAATCCGCGCCGGCCTGAAGATTTGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCTGATCCGGAAGTCTATATTTATCAAAATCAGGAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCGTATAGGGTAGCAAAGCTCGTTATCGAGTGCGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCCGCATGAGCCACAAACATGTCTGATGCACACGCACGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATACCGTTTACAGGCATCATATCTTTGCTTATGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATACACGCTATTATGACCGGGGAAATGGGGGAGCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGATACATAAAGTTATCGATGTAGGTTATGTTATGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATACTTTATCTACTTTACTCCTACTGGTGTACTAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATACTTTATCTACTTTACTCCTACTGGTGTACTAAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGAAAAGCTCTATTACAGCTGCCTCAAAGGCATCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATGCCACACTCATGGATAAAGCTAATGCCAATAAGAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGAGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTGAAGTGTCGTGACCACCCCGGCTGTTAGGCCACGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTCCGCACTGGGAATGCCAATCATATTGACTCTGGCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCTGCTCAATCATAGTCAACTCATCTACCCAACTGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATGCCTATAGCCGCTGTGTCTTCCAGATTATACGCTGGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATAGCAACTATTTAATCATTCTTCTGAGCGTCAGACACGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATCCCGTTTTCGTGGGACCAATACCAGATATCCGCCCGTCGAGGCCTCTACGAGGCTCGAGGGTTGAAATTCGCATACTACCCGATACCGCAGAGCGTCAGCAAGTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAATTCTATTCGAGAGTGGGCTTGATACCAATTCCGAGTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAATACAACATGGTCATGTAGCTTTTTTACGCGACGTTCGTCGAGGCCTCTGCGAGGCTCGAGGATTTAAAT

>NC_011830|2|2|2361841-2365711|PILER-CR
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTATGGGATGGACAGATATAAATTAACCATGTCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCTGAAAATCTATCTGCCGCCCTGACTTATTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GTCACTGAATCAGCGGTTACTATCACTGCAGGGGTA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAACGACTGAATACGTAGACACGGCGAAAACGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGGGGACGTACTGCCAAGCCTTGTTGAAATCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTTCTGCACAGCAAGCCACGCATAAAACTCCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTGGGGGCTTAGTGATTAAGCCGTCAAGGATA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCAGCGCCTTTGCCGACAGGCTTTCCGATAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGACCCTCGCTGCCCACCAAGTTGGCCATACGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATAATGTTTTTCATTAACTCTATAGGTTTTTCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCATTCCACAATAAGCACAGGCATCTCCAAAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGTCAGGATTGTACGTTACACACCAATGCCAAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TAGAATTTGTGGTAACGCCTTTTCTAATCTTTC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GAATACGCAAAGGTGATTTTTGAATGCGAGAAGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCCTACCTGATTGAGAAACGCAATATCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATAAAGGCCAACACGATAGCAAACAAGGCGACAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCAGCATACTCGGCAATAAGGGACTCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAAAGCCAAACAAACATATACCGGGAATCGGACG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATCAGACTGGCCGAAGAGATGAAGAATCCTATTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AATCGATTGGTCCATAGAGGCAAAAATCTCTTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTTTTACAAACCAGTTGACAATCTCCGCATGAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTTGGGACAAATCCGCGCCGGCCTGAAGATTTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGATCCGGAAGTCTATATTTATCAAAATCAGGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTATAGGGTAGCAAAGCTCGTTATCGAGTGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGCATGAGCCACAAACATGTCTGATGCACACGCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACCGTTTACAGGCATCATATCTTTGCTTATG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACACGCTATTATGACCGGGGAAATGGGGGAGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGATACATAAAGTTATCGATGTAGGTTATGTTAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAAAGCTCTATTACAGCTGCCTCAAAGGCATC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCACACTCATGGATAAAGCTAATGCCAATAAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAGTGTCGTGACCACCCCGGCTGTTAGGCCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCCGCACTGGGAATGCCAATCATATTGACTCTGGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGCTCAATCATAGTCAACTCATCTACCCAACT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCTATAGCCGCTGTGTCTTCCAGATTATACGCTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCAACTATTTAATCATTCTTCTGAGCGTCAGACAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGTTTTCGTGGGACCAATACCAGATATCCGCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGCATACTACCCGATACCGCAGAGCGTCAGCAA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT	TCTATTCGAGAGTGGGCTTGATACCAATTCCGA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT

>NC_011830|2|2|2361841-2365779|CRISPRCasFinder
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTATGGGATGGACAGATATAAATTAACCATGTCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCTGAAAATCTATCTGCCGCCCTGACTTATTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GTCACTGAATCAGCGGTTACTATCACTGCAGGGGTA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAACGACTGAATACGTAGACACGGCGAAAACGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGGGGACGTACTGCCAAGCCTTGTTGAAATCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTTCTGCACAGCAAGCCACGCATAAAACTCCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTGGGGGCTTAGTGATTAAGCCGTCAAGGATA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCAGCGCCTTTGCCGACAGGCTTTCCGATAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGACCCTCGCTGCCCACCAAGTTGGCCATACGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATAATGTTTTTCATTAACTCTATAGGTTTTTCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCATTCCACAATAAGCACAGGCATCTCCAAAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGTCAGGATTGTACGTTACACACCAATGCCAAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TAGAATTTGTGGTAACGCCTTTTCTAATCTTTC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GAATACGCAAAGGTGATTTTTGAATGCGAGAAGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCCTACCTGATTGAGAAACGCAATATCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATAAAGGCCAACACGATAGCAAACAAGGCGACAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCAGCATACTCGGCAATAAGGGACTCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAAAGCCAAACAAACATATACCGGGAATCGGACG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATCAGACTGGCCGAAGAGATGAAGAATCCTATTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AATCGATTGGTCCATAGAGGCAAAAATCTCTTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTTTTACAAACCAGTTGACAATCTCCGCATGAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTTGGGACAAATCCGCGCCGGCCTGAAGATTTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGATCCGGAAGTCTATATTTATCAAAATCAGGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTATAGGGTAGCAAAGCTCGTTATCGAGTGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGCATGAGCCACAAACATGTCTGATGCACACGCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACCGTTTACAGGCATCATATCTTTGCTTATG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACACGCTATTATGACCGGGGAAATGGGGGAGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGATACATAAAGTTATCGATGTAGGTTATGTTAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAAAGCTCTATTACAGCTGCCTCAAAGGCATC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCACACTCATGGATAAAGCTAATGCCAATAAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAGTGTCGTGACCACCCCGGCTGTTAGGCCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCCGCACTGGGAATGCCAATCATATTGACTCTGGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGCTCAATCATAGTCAACTCATCTACCCAACT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCTATAGCCGCTGTGTCTTCCAGATTATACGCTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCAACTATTTAATCATTCTTCTGAGCGTCAGACAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGTTTTCGTGGGACCAATACCAGATATCCGCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGCATACTACCCGATACCGCAGAGCGTCAGCAA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT	TCTATTCGAGAGTGGGCTTGATACCAATTCCGA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT	ACAACATGGTCATGTAGCTTTTTTACGCGACGTTC
GTCGAGGCCTCTGCGAGGCTCGAGGATTTAAAT

>NC_011830|2|2|2361841-2365779|CRT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTATGGGATGGACAGATATAAATTAACCATGTCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCTGAAAATCTATCTGCCGCCCTGACTTATTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GTCACTGAATCAGCGGTTACTATCACTGCAGGGGTA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATTTCGGACGGTAGCATGACAACTACCGCTAAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAACGACTGAATACGTAGACACGGCGAAAACGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGGGGACGTACTGCCAAGCCTTGTTGAAATCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTTTTCTGCACAGCAAGCCACGCATAAAACTCCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTGGGGGCTTAGTGATTAAGCCGTCAAGGATA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCAGCGCCTTTGCCGACAGGCTTTCCGATAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGACCCTCGCTGCCCACCAAGTTGGCCATACGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TATAATGTTTTTCATTAACTCTATAGGTTTTTCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTCATTCCACAATAAGCACAGGCATCTCCAAAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGTCAGGATTGTACGTTACACACCAATGCCAAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TAGAATTTGTGGTAACGCCTTTTCTAATCTTTC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GAATACGCAAAGGTGATTTTTGAATGCGAGAAGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTCCTACCTGATTGAGAAACGCAATATCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATAAAGGCCAACACGATAGCAAACAAGGCGACAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGCAGCATACTCGGCAATAAGGGACTCAAAGAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAAAGCCAAACAAACATATACCGGGAATCGGACG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATCAGACTGGCCGAAGAGATGAAGAATCCTATTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AATCGATTGGTCCATAGAGGCAAAAATCTCTTT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTTTTACAAACCAGTTGACAATCTCCGCATGAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGTTGGGACAAATCCGCGCCGGCCTGAAGATTTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGATCCGGAAGTCTATATTTATCAAAATCAGGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CGTATAGGGTAGCAAAGCTCGTTATCGAGTGCG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGCATGAGCCACAAACATGTCTGATGCACACGCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACCGTTTACAGGCATCATATCTTTGCTTATG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATACACGCTATTATGACCGGGGAAATGGGGGAGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGATACATAAAGTTATCGATGTAGGTTATGTTAT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ACTTTATCTACTTTACTCCTACTGGTGTACTAA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAAAGCTCTATTACAGCTGCCTCAAAGGCATC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCACACTCATGGATAAAGCTAATGCCAATAAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	ATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGA
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TGAAGTGTCGTGACCACCCCGGCTGTTAGGCCAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCCGCACTGGGAATGCCAATCATATTGACTCTGGC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CTGCTCAATCATAGTCAACTCATCTACCCAACT
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	GCCTATAGCCGCTGTGTCTTCCAGATTATACGCTG
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	AGCAACTATTTAATCATTCTTCTGAGCGTCAGACAC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	CCCGTTTTCGTGGGACCAATACCAGATATCCGCCC
GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT	TCGCATACTACCCGATACCGCAGAGCGTCAGCAA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT	TCTATTCGAGAGTGGGCTTGATACCAATTCCGA
GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT	ACAACATGGTCATGTAGCTTTTTTACGCGACGTTC
GTCGAGGCCTCTGCGAGGCTCGAGGATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011830.1\|WP_049769596.1\|2349804_2350344_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_011830.1\|WP_005814304.1\|2369613_2370327_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011830.1\|WP_015943914.1\|2371710_2373198_+\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_005814298.1\|2366992_2367340_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_011830.1\|WP_015943909.1\|2356548_2357433_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_011830.1\|WP_015943907.1\|2353765_2354440_+\|CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011830.1\|WP_015943910.1\|2357429_2359619_+\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|350688
NC_011830.1\|WP_005814297.1\|2365974_2367000_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015943905.1\|2351611_2352982_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143454
NC_011830.1\|WP_005814302.1\|2367609_2369553_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_011830.1\|WP_015943916.1\|2378159_2379329_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349932
NC_011830.1\|WP_015943908.1\|2354429_2356559_+\|hypothetical-protein	cas8c	mkCas0173_cas8c_CAS-I-C	gnl\|CDD\|177283
NC_011830.1\|WP_005814312.1\|2374914_2376537_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NC_011830.1\|WP_005814314.1\|2376749_2378087_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NC_011830.1\|WP_005814305.1\|2370323_2371718_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_011830.1\|WP_015943912.1\|2360340_2361372_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011830.1\|WP_005814309.1\|2373392_2374685_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NC_011830.1\|WP_015943911.1\|2359672_2360344_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011830.1\|WP_026184041.1\|2361381_2361672_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011830.1\|WP_015943904.1\|2350392_2351610_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341468

Protein	Function_ID	Function_description	E-value
NC_011830.1\|WP_049769596.1\|2349804_2350344_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.19768e-13
NC_011830.1\|WP_005814304.1\|2369613_2370327_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.6124e-92
NC_011830.1\|WP_005814298.1\|2366992_2367340_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	5.08256e-18
NC_011830.1\|WP_015943909.1\|2356548_2357433_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.20083e-70
NC_011830.1\|WP_015943907.1\|2353765_2354440_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.25434e-23
NC_011830.1\|WP_015943910.1\|2357429_2359619_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.27753e-24
NC_011830.1\|WP_015943905.1\|2351611_2352982_+\|aldehyde-dehydrogenase	gnl\|CDD\|143454	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.	0
NC_011830.1\|WP_005814302.1\|2367609_2369553_+\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	9.62883e-82
NC_011830.1\|WP_015943916.1\|2378159_2379329_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	2.49367e-123
NC_011830.1\|WP_015943908.1\|2354429_2356559_+\|hypothetical-protein	gnl\|CDD\|177283	PHA00451, PHA00451, protein kinase.	0.00746969
NC_011830.1\|WP_005814312.1\|2374914_2376537_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	7.50658e-29
NC_011830.1\|WP_005814314.1\|2376749_2378087_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	4.92047e-82
NC_011830.1\|WP_005814305.1\|2370323_2371718_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.7765e-58
NC_011830.1\|WP_015943912.1\|2360340_2361372_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011830.1\|WP_005814309.1\|2373392_2374685_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	3.79313e-115
NC_011830.1\|WP_015943911.1\|2359672_2360344_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.58108e-31
NC_011830.1\|WP_026184041.1\|2361381_2361672_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.27186e-34
NC_011830.1\|WP_015943904.1\|2350392_2351610_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341468	cd08189, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domain. Proteins of this family have not been characterized.	0

>NC_011830.1|WP_026184041.1|2361381_2361672_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIIDTETDSLRFYMLGNNYKNKVEHIGAKPSFNVEDTLII
>NC_011830.1|WP_015943912.1|2360340_2361372_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSPNTYLSLDGENIVILKDDVEALRVPLHNLESIIAFGYTGASPALMGACAKRNISLSFMKSNGKFLGRVVGEVRGNVTLRKAQYRLSDDEATSHRIAKSFILGKVYNSRWVVERATRDHGARLDVEKLKGVCQTLANALRLVENSKDLDQLRGVEGEAAAQYFRVLDDLILQQKEDFYFKCRNKRPPLDNVNAMLSFIYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVFADRFVLSLINRREVNPSGFTRMENGAVVMDDDTRRDILKAWQSRKQEEIKHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_011830.1|WP_015943911.1|2359672_2360344_+|CRISPR-associated-protein-Cas4
MEYQEDDFLLLSGIQHYVFCKRQWALIHIEQQWQENFRTIEGAILHEKTHDSTIKEKRGALIISRGMGIFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQDNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPRRRTKVILDEEIREEVKRICQEMHELYAKRYTPKVKTTKACRACSLSEICLPKLCKNPSALDYMKKMIAEIEVEP
>NC_011830.1|WP_015943910.1|2357429_2359619_+|CRISPR-associated-endonuclease-Cas3''
MIYYAHSRKDDIPEQTYAEHVCGVRSWGRDYVQEISCYAKCDNTLLSQIIEKASTIHDLGKLNKKNQDVLAGREQDEKLPVHHWDAGAAYFLRNSHLSVFSAAVIQAHHKGFPDFTVEVERDDAAFRDRAIASEVDKELPELEAIHNNLVDSRFEYDREEIKGDKSVFLRMLLSCLVDADHTDTAIHYRKYPAEMSPVRLRAAERLAQLDRHIAGLKQTGADDARNALRNEMYLACRNADIDAGITSCDSPVGSGKTTAIMAHLLAQAEKRGLRRIFVVLPFTNIIKQSVDIYRKTLVLPGENAEEVVAELHHRADFESKDARHLTALWRAPIIVTTAVAFFETLASNSTAALRRLHELPGSAVFVDESHAALPAKLLPIAWKWINVYAAEWNCYWVLASGSLNRFWTIPEIIGNESFHPVPEIIDDELRKRLAVYENNRISYHCDLFPKGTAELAQWISGFPGPRLVILNTVQSAAVLADYFSEHFGRECVEHLSTALTPNDRSNTLERIKKRLMDKKDTNWTLIATSCIEAGVNLSFRTGFRELGALVSLLQASGRVNREGVLDNAEMWTFCILEDGMLRLNPGLKEAAAVLKRFFEGNSAIVPELSTQSLTDEIALYGLSGKHRNLVTNEKLQNFRKVEEDFKVIDSDTRLVVVDPSMAKRLQYGKVDWKELQKVSVQIAKYKLDELRTPMIMDKIYRWNLEYDGFLGYMAGIVKLKKYSGGAIII
>NC_011830.1|WP_015943909.1|2356548_2357433_+|type-I-CRISPR-associated-protein-Cas7
MNSEIKRATGLMVIEVVNSNANGDPDRESDPRQRPNGIGEISPVSFKRKLRDLVGDHDSVFYQNLPEVYVKNSDHYCILESRGRDRKSIQSEMSKDIKNFEQKSFLESTFVKKYWDARIFGNTFLEEGANKGFIKTGVVQFGVGTSISPVNIIRHTNTNKAGVQEGKNAGMAPLAFRIVEHGVYCMPFFVNPNYAAKTGCTQEDIDLLKLLIPKAYDLNRSAIRPDVRIRHAWYIEHLNALGSCPDYLLLEALTPKRIGDVTIASKSWADYEDKTDLPEELKAKVSSATDLMLV
>NC_011830.1|WP_015943908.1|2354429_2356559_+|hypothetical-protein
MLNELYSLSTAMKSKGISAKEWHREYKSLPKVTAKSPCIRIWLAQDGSICGLESISAELAQSLRKYGNNQGTFPAFNIAPLYRITEEEQLTELEQIEKGTIPLDLDKIKSWCVHDNWKGSIVKKVDRSLHTIPQTLSGLIGNQEQPEGRLISKLIQLASGFRNEPDKSFKSALEKCVFAKLQKQEDIGTLLTVLFHKGNPKKEHNDDTGSISVVLDLFDWQQYGYPVTSQHFTEWLNDMLLKSSSRSASQPSKDVERDAFGIPFINPDEPMPSVKLSGFEVTLRSMFNGQPCQYRYEQIDDGSYPIAMENRSLIKKSLEWAADLEREGITWRKIDKSEIVFAYPSKLLEISPKFVSIFGSGQAENSARAEARFENIAKDFIRTLRGLLPEETPKFIQIFTIRKLDKARSKVIFTRNCSPDQLIQAAEDWQAGCGNIPETELGKRETPFPLQVARIVNNVWKQNGELAQGQTAVERMKYYQGMELLLDPMQENMIGNYLHVTLTHSSGLVSYIGNWVHGGSSCKSKTEEKALEKLKNEAALLLDVLGLLLYKRGERKEKYMENMAYLVGQLLKISDELHTLYCKVVRGGDVPPQLAGSALFAAAGERPYQTIAQLSLRMNPYITWAKHYRFKNISTKDEESWRARWYLNLYEDAANKLLPAMTDSTRFNDFEKAQLFIGYLASFPRRGSSVTVADESDNDNNVGGANYEQ
>NC_011830.1|WP_015943907.1|2353765_2354440_+|CRISPR-associated-protein-Cas5
MVRLSYPIAMEIAGNTAMWTRPDSGDCPVSYPAPTYSAVKAIFESVAWGPGVEIIPTKVELCAPIQYHSYCTNYGGPLRSTKSIKEGNNYQLYATVLIDVCYRLYAEVVPYKDKSRLPESAVQWDKKTTSPGHAYQSIFNRRLKRGQCYSIPTLGWKEFTPSYFGEFRDTTQVLSDALPIVIPSMLRRVFAKGYGSPVSYVYDNDLVIRNGVLEYPQRSENYAQ
>NC_011830.1|WP_015943905.1|2351611_2352982_+|aldehyde-dehydrogenase
MPDIKEILVKQKAFFQTGKTKELQFRVDMLNKLRSAIKIHEEEIMAALKADLNKAPFEAYATEVGMVLEELNYTLKHISSWVKPKRVRTPLVHFPSASYLYTEPYGSVLIMSPWNYPFQLALAPLVGAISAGNCAVLKPSEYSANTSAMIERIVKEIFDESFVAVVRGGREANKTLLNEKFDYIFFTGSVGVGKTVMESAARHLTPVTLELGGKSPCIIDDTADLELAAKRIVWGKFLNAGQTCVAPDYLLVHRTVKEKLIQEIKKSITAFYGHDPLGNEDYPKIINQKHFERLLGLLKSGRVVEGGRSDEKTRRIAPTILDDVTWESPVMQEEIFGPLLPVLEFESFDAALAMVNQHPKPLALYLFTRSKDHEAQAISKTSFGGGCINDTIIHLANPNLRFGGVGESGMGQYHGKGSYDTFSHTKSIMKKSNKLDIPLRYPPFRNHLSLLKKLMK
>NC_011830.1|WP_015943904.1|2350392_2351610_+|iron-containing-alcohol-dehydrogenase
MNTLYCRLYQRTLQLASYFLPWRKPTLLEGANSLNKLPEVISRKGISKILIVTDQGISSLGLVNSFLQDLDKAGVRYTVYDKTVPNPTLDNIEEALKLYQEQQCEGIVAFGGGSPMDCAKGVGARVANPHKSISQMKGVLKVRRKLPPLFAIPTTAGTGSEATLAAVISDPRNREKYPVNDTALIPHYAVLDPLLTVGLPKHITSTTGLDALTHAVEAYIGRSNTQETTELSRKAVRLIFDNLYIAYSQGENVKARENMLKASYYAGVAFTRAYVGYIHALAHALGGFYGVPHGLANAVILPCVLEYYGEAVHERLAELADVLEMGSPGDSHEQKATLFIEAIKELSKKMNIPRKIDGILAEDIPLLVEHAWKEATPLYPVPRLLSRNDLNNILNLIGSAQKEEV
>NC_011830.1|WP_049769596.1|2349804_2350344_+|TetR/AcrR-family-transcriptional-regulator
MRRHILTVAGGLMIEKGVKETSLKDIAQEAGISKGTLYYYYSAKEDIIYDIANHNLKQITDGLLAWIEDANTEVAPEEVLKTVFEQILGAETRGKLHLYLLSDAGTSNTLLKEKFKEQYQEWRKTLQYGLDKILPSQNQKNVMLSYLILAALDGLIIQRLFGTEEIPVQEIVKLLVNAE
>NC_011830.1|WP_005814297.1|2365974_2367000_-|hypothetical-protein
MDNLIERYVYDVTRRLPEKDREEVSKELKSNIYDMLPENADENERKMVLYNLGSPASLAEKYRQKPRYLISPAVYEDYVRVLKWVLPLVGVVVLVIGMILGAIDAIKDGMVDLPYLISNTLSKGIVMGISAVFQALIWTTVGFVIADRTGAKANKSKEQEWRVEDLPDALPDDRGKIKLSDSIAELVLTGVFSVLGILICRGVLPVAFVIQNGDTQIRTLFSPSFLASCVPAIAVMAILAVGACIFKIKVRRWTPIVCGAVVISTIINMCIMIYLLNRPDLFSTEFTAFLQSIDWGSFDPLGFMGVGGANLFIVFIAIVVVVCSLAECGQAIYKTLKYKIQ
>NC_011830.1|WP_005814298.1|2366992_2367340_-|PadR-family-transcriptional-regulator
MSANEQMQNFITELRRGSLTLAVLGCLKQPHYGYALLQTMQEKQIDVEANTLYPLLRRLENQGLLVSDWDTSESRPRKYYTVNEKGEMVYRELMTEWKKLQSNIESICGEDKCNG
>NC_011830.1|WP_005814302.1|2367609_2369553_+|acetyltransferase
MNYSTKTNQFNEQPNRQYRGRRLRTVDHGYMPGLDGLRALAVFAVIFYHLNLSWAPGGLLGVTLFFVLSGYLITNILLKQWESTGTIDLKDFWLRRARRLLPAVFVMLAGVMVWMLLFAPERLAALKQEALAAVFYISNWYLIFHQVSYFESFGPPSPLGHLWSLAVEEQFYLLWPLLLGLGLRWIRQRKWLAVGTIALTFASAAAMALIYSPGQDPSRVYYGTDTRAFSLLVGAALAMVWPSGKMTGELTGSKKLLLDGTGALGLLAVLLMILKTNQYQPFLYQGGLLLFSIAAAVLVAVLAHPASSLGRFFSWGPWRWLGECSYGIYLWHYPVIILTNPAVNTGGVDLSRTFWQIGLSIILAVLSRHFIEDPIRYGRRKRGRRRVPALQWWQKPLGVGAKMSLGILLMVLLLFVTPNGGTGISAKAIAQNHETTEQAQGQAQEQAQNQNQAQSQTQTQNQDEQGTQAQGAEQEDNKANGEAIGTEQENEITIIGDSVMINVTPVLQEQFKGIVIDAQLGRQMYQAPEVIAGLREEGKLGKTVVIQLGNNGPFSEKQLKETLDTLPGSTEILLVNTRVPKPWEGEVNETLNKVAQSYPGARLIDWHTVSKGHNDYFYKDGVHLTQTGVEAYGEMLVKALAVGENDY
>NC_011830.1|WP_005814304.1|2369613_2370327_+|response-regulator-transcription-factor
MREKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPEMVRRLP
>NC_011830.1|WP_005814305.1|2370323_2371718_+|HAMP-domain-containing-protein
MKGIRGRLTANFMIVILVSVAILEVLLIYTVQQNYYGSLRGNLTNQVKISADMYSKYYSDTSLEDNILYNVDAFWNQSNAQVEIVDRDGKIVMDSLGAISEQEGPTEDIQDALNDQMGEWIGKLNGQKVMAVAYPLKSEGEIVGALRFIASTHEIDQDIQDTAKIFIAIGLFVAMVVGFLSIFLANTILIPLKEVTAIAESMAAGNFQIKSRKKRDDEIGKLADTLNYMAEEITKKEKLKNDFISSVSHELRTPLTSIMGWAITLQSEKFQQKEMLNDGLGIIAKESERLTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATRETIQFTVDYPENLPDLLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDYTFTISDNGCGIAAGELPMVKEKFYKGKSSRSRNGIGLSICEEIITLMKGRLEIHSEVNVGTTVVITLPREVCAHG
>NC_011830.1|WP_015943914.1|2371710_2373198_+|hypothetical-protein
MVKKSLLLPLAFLLLFLGGCAEFSGASAGKIIPPSAQVSPLGGKWTVLEELDSNGSEGGAGQPWLGSDVQFAPGVVSFGGHVWDNPAYKIKRVKAEDYLLTKYIPSVGSSGLKSQKVDVITVYASGNYLGEFMKLDDTSMIFFVENKALLLKIVAEEADSTLVAGDTSAQELNQDSREGISGVLLGLRIPAATGYTYQTLWIAADHQQLRPILASEQIFFPRTSGFWELSVQNLPADGMTDNLLTARNVTAKAPDLKRENGEREGGAGTEEQPNAEAERVINYIGNDYIAMEKRTAGINHLQVLPVDKLLSPTEIKVSDLLGDKGFNAYLNAREQAAAALREKGITSVSQDESGENFGLIRKNGRWSLVGRIHYQSGGNLEYKDFDLKIIPPANLIFYDALVLSWYNIKDRVPDATDAFTSPNRDIALVKTKTKLTIYPIGTDKLGETHLAELELPEGATVIMAEWATGSYVDSWEKSFLAYGAQALADGSVRMR
>NC_011830.1|WP_005814309.1|2373392_2374685_+|serine-dehydratase-subunit-alpha-family-protein
MFMERQDRYYQTYLNILKEELVAAMGCTEPIAIAYGAAKAREVLGAVPHKVVLEVSSNIIKNVKSVVVPNTDGLKGIEAATAAGIIAGRSDKILEVIAEVCQAEKQQIKTYLSETDIEVKLADSQIIFDIMITMFHQDSYVKLRIADYHTHIVHIEKNGEIIFGTGDLDAGISSLTDRKLLSVSKIIEFADSVRIEDVKELLDKQIEYNSAIARAGMEGNYGANVGRVLLKTYGNDVKIRAKAMAAAGSDARMSGCELPVIINSGSGNQGMTASLPVIEYAAELQSGEEKLYRALVVSNLITLHLKTGIGRLSAFCGVICAGCGSGAGIAYLHGGGYDEIAHTIVNAAAIVSGIVCDGAKPSCAGKIAAAVDAGILGYLMYKEGQQFRGGDGIVAKGIENTIANIGYLGKVGMKETDKEIINIMLNQCSS
>NC_011830.1|WP_005814312.1|2374914_2376537_+|PucR-family-transcriptional-regulator
MSITVEDCLQLSVLREAEVVAGAKGLNNIVAHVSVLEWSNSLALKNGIFLGNEIVITCFHYAKDDVDAQCQVVRDLSAAGEVGMILYYVGIVLPDIDARLIRTADELGYPLICMPRNRFDYRYSEAITEIMEAVFKDQMKEKYYVKDMLERLAMLPERQRTIGNVLRMLSDRLYCSIILCDREFKLLDAATWPTTANLNLPEILNLYKNTVLSRPGVNNLEFTYDNEVMAARSQPIATDDGYSMNLIFLNLPEKKVLGDAIAQAAELIQLSSSIWNFDIRQEGHREMLKAFFYDEPIKLKRIANGLHIDIDRLQTMWVLKSKADSPTREALTLKNSRLLALLKHFFNEHHIHAIADHFEDNVVALIEPPYGETTMTSFLEEFMKTVQDESVRAFPVNCPGENAAGAFRKAYFEIQDNDGSAMTIYPSKRIINTHEIEFSGLCREIAEKGKEAIDEKLKVLRALGAQDDFAGKELVSTLEVFLLDAEANVEQTSKLLFLHKSTIKYRIKKIKELLGCDIAKLPEAYSLYVAVAVKRLIASL
>NC_011830.1|WP_005814314.1|2376749_2378087_+|cytosine-permease
MSETTQNTSHDDYSLSRVPQHAKKPLWQIIVIRLGCFACVSQLMTGAALGFGMSFHDALLAVFLGSIALLIVGAAVGVIAAQQGLSTSLLARWSGFGNQGSALIGVIIAISSIGWFGMQNTVFAEGMYQATGILNLQIWSVLTGASIIAIVYFGISSLSWTANIALPLFLVAIGISSIQMFRGHSLTDLIASPIPGPALSLATGATMVAGSFIIGAVISPDICRFLKRGRDVFWMTLISTFVGELSMCMLAVLMAHAIKSADVMTIIVSLSGLIGVIIVIFSTIKVNDINLYAASLGMTNALNALFKKDFDRRQMTIILGVFGTALSVIGVINYFENFLVVLGVAIPPIAGIISIDYFILKRDRKILDESKERGELPDKVENWNPVAILAWAVGSLVGYFVQIGIPSINSLIVSGLLYYGAMKVYGLIQKKEIVRFRMVDSQSEG
>NC_011830.1|WP_015943916.1|2378159_2379329_+|M20/M25/M40-family-metallo-hydrolase
MNRWINEKRLIASFCDLVTIDSLSYRERDMADELLRRLKRLGFEVWEDDAGPKIGGSAGNIIAKLKGIVEKEALLFTAHMDTVQPGTAKTPLLSGKRIHTDGTTVLGGDDAAGIACILEMAASLREHKLDHGDIYVIFTVAEEMGLQGAKNLNPAVMEKVKANYGFVLDDAGKAGGVVAAAPAHVKRHITIRGKSAHAGVEPEKGIDAVRIMAEAVYHMQLGRLDEETTANLGMIKGGEAGNTVCGQLEILGEVRSRNPEKLAKQLKAMQRCFEEAARNWGGAVEFEDELLYGAIDLRRHPDLQKLLEKAAEKIGLPMDYHSSGGGSDANILNSLGFPCVTLSSAFYAMHTVQEYVDIEEMIRLTEFMLSITQSVEAVEKAGVRNLTTE

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Crispr_ID: NC_011830_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011830_3

4165529-4166021

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CRT
GTTTCAATCCCTTATAGGTAAGCTAACAA	PILER-CR

7 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

The CRISPR arrays of NC_011830_3

>merge|NC_011830|3|4165529-4166021|CRISPRCasFinder,CRT,PILER-CR
GCTTCAATCCCTCATAGGTAAGCTAACAATTTAATACGGCAAATGGAAGAGACCGCAGGACATAAGTTTCAATCCCTTATAGGTAAGCTAACAACTTTTGCCCAATTTTCTCTACATGAGTGTGGATGATATGTTTCAATCCCTTATAGGTAAGCTAACAACCATCCTTGAGGTCACGGAGTTTTTGAGTCATGTTTAGTTTCAATCCCTTATAGGTAAGCTAACAACAAACCGCTCAATTTTCACCCGAAGCTTCTGAAAGCGTTTCAATCCCTTATAGGTAAGCTAACAACAAACACCAGGCTGGCCGAACTGGCGGCGCTCATATGGTTTCAATCCCTTATAGGTAAGCTAACAACTCGGTGTGCTTTTGGGATTGCCCAAAAACGCATTTGCGTTTCAATCCCTTATAGGTAAGCTAACAACTGTGGGGTTGGAGCCGGTGCGTATGGCTTCCAGCAGGGTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_011830|3|3|4165529-4166021|CRISPRCasFinder
GCTTCAATCCCTCATAGGTAAGCTAACAAT	TTAATACGGCAAATGGAAGAGACCGCAGGACATAA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTTTGCCCAATTTTCTCTACATGAGTGTGGATGATAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CATCCTTGAGGTCACGGAGTTTTTGAGTCATGTTTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAACCGCTCAATTTTCACCCGAAGCTTCTGAAAGC
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAACACCAGGCTGGCCGAACTGGCGGCGCTCATATG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TCGGTGTGCTTTTGGGATTGCCCAAAAACGCATTTGC
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TGTGGGGTTGGAGCCGGTGCGTATGGCTTCCAGCAGG
GTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_011830|3|3|4165529-4166021|CRT
GCTTCAATCCCTCATAGGTAAGCTAACAAT	TTAATACGGCAAATGGAAGAGACCGCAGGACATAA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTTTGCCCAATTTTCTCTACATGAGTGTGGATGATAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CATCCTTGAGGTCACGGAGTTTTTGAGTCATGTTTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAACCGCTCAATTTTCACCCGAAGCTTCTGAAAGC
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAACACCAGGCTGGCCGAACTGGCGGCGCTCATATG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TCGGTGTGCTTTTGGGATTGCCCAAAAACGCATTTGC
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TGTGGGGTTGGAGCCGGTGCGTATGGCTTCCAGCAGG
GTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_011830|3|3|4165531-4166020|PILER-CR
TTCAATCCCTCATAGGTAAGCTAACAATT	TAATACGGCAAATGGAAGAGACCGCAGGACATAAGT
TTCAATCCCTTATAGGTAAGCTAACAACT	TTTGCCCAATTTTCTCTACATGAGTGTGGATGATATGT
TTCAATCCCTTATAGGTAAGCTAACAACC	ATCCTTGAGGTCACGGAGTTTTTGAGTCATGTTTAGT
TTCAATCCCTTATAGGTAAGCTAACAACA	AACCGCTCAATTTTCACCCGAAGCTTCTGAAAGCGT
TTCAATCCCTTATAGGTAAGCTAACAACA	AACACCAGGCTGGCCGAACTGGCGGCGCTCATATGGT
TTCAATCCCTTATAGGTAAGCTAACAACT	CGGTGTGCTTTTGGGATTGCCCAAAAACGCATTTGCGT
TTCAATCCCTTATAGGTAAGCTAACAACT	GTGGGGTTGGAGCCGGTGCGTATGGCTTCCAGCAGGGT
TTCAATCCCTTATAGGTAAGCTAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011830.1\|WP_011460576.1\|4158996_4160202_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341464
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_011830.1\|WP_005817554.1\|4166164_4166428_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_011830.1\|WP_015944880.1\|4162206_4162842_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|366912
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_011830.1\|WP_005811924.1\|4161490_4162201_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|225419
NC_011830.1\|WP_015944887.1\|4176010_4178068_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_011830.1\|WP_015944881.1\|4163214_4163454_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_011830.1\|WP_011460578.1\|4160703_4161174_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_011830.1\|WP_015944884.1\|4172574_4172805_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_011830.1\|WP_005811935.1\|4164133_4165009_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455
NC_011830.1\|WP_015944878.1\|4160158_4160575_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NC_011830.1\|WP_005811933.1\|4163504_4163729_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011830.1\|WP_011460574.1\|4156537_4158025_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|211407
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_011830.1\|WP_011460575.1\|4158176_4158899_-\|RibD-family-protein	unknown	unknown	gnl\|CDD\|224896

Protein	Function_ID	Function_description	E-value
NC_011830.1\|WP_011460576.1\|4158996_4160202_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341464	cd08185, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase-like (ADH) proteins. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized.	0
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_011830.1\|WP_005817554.1\|4166164_4166428_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.63322e-33
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.37882e-21
NC_011830.1\|WP_015944880.1\|4162206_4162842_-\|molecular-chaperone-DnaJ	gnl\|CDD\|366912	pfam02085, Cytochrom_CIII, Class III cytochrome C family.	4.61335e-08
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.26685e-58
NC_011830.1\|WP_005811924.1\|4161490_4162201_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|225419	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion].	1.25623e-07
NC_011830.1\|WP_015944881.1\|4163214_4163454_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	6.02559e-20
NC_011830.1\|WP_011460578.1\|4160703_4161174_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.89499e-47
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_011830.1\|WP_005811935.1\|4164133_4165009_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	2.21448e-70
NC_011830.1\|WP_015944878.1\|4160158_4160575_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.87042e-53
NC_011830.1\|WP_005811933.1\|4163504_4163729_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	2.1145e-15
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.28451e-36
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.04699e-77
NC_011830.1\|WP_011460574.1\|4156537_4158025_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|211407	cd11557, ST7, Suppression of tumorigenicity 7. ST7 is a metazoan protein that behaves as a tumor suppressor in human cancer cells. It appears to localize to the cytoplasm and plasma membrane, and may mediate tumor suppression by regulating genes that are involved in oncogenic pathways and/or maintain cellular structure. It has been suggested that the suppression of tumorigenicity is associated with a function in mediating the remodeling of the extracellular matrix. However, somatic mutations of ST7 have not been observed as being commonly associated with molecular pathogenesis in various human neoplasias.	1.90259e-13
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.23402e-76
NC_011830.1\|WP_011460575.1\|4158176_4158899_-\|RibD-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	2.05656e-28

>NC_011830.1|WP_005811935.1|4164133_4165009_+|DUF3102-domain-containing-protein
MKEGKERSGVAMNPTVPERTSLIIAVEINSIKDQTEKLVLHNFIEIGRRLHEAKALLPHGEWLQWLEESVDFSPNRAAKLMRLYDAYGLPHSSLLDSDAQDQVLSKLSYTQALILLGVPEEERTQLLLDLDIENMSTRELKKAVDKQKQIQQEKERAEQENTALRQALDGVKEANTELAKERDSLKQEAVELRKTQQALQENVEKATLQNKKLKENMNYKSYQRVRNDLAAAQTKLFTSQVAFKYEALERAFKELSYELDLLANLDAQVHAGYMSKLNDFLLKAMRGRMQG
>NC_011830.1|WP_005811933.1|4163504_4163729_-|DUF1659-domain-containing-protein
MAVTSTPLSSALVIVYQAGLTPLGAPVTRQKSLNGLRFDADEQAIYNAAHALFSLSQYSVLDVLNRKTFELLEE
>NC_011830.1|WP_015944881.1|4163214_4163454_-|DUF2922-domain-containing-protein
MAITTTKVVRLTFTTTGGKTFSITIPNPKDDLQQAEAVAVMNSLIESDLFLTAGGSLLGIRDIKVVDTQTNDLYDPPQV
>NC_011830.1|WP_015944880.1|4162206_4162842_-|molecular-chaperone-DnaJ
MNKKKRWAFKGIIFTFFFSFWLFANGAEVLAQLNCNQCHADVANEFKSSVHSSLSCTSCHSDVTTYPHPESAKVDKKKSVAMCTTCHTGRVEDSYQHSFHGKAVFLGSQRSASCVDCHSAHEVLSHNNPNSQVAKENVPQTCAKCHDNPSPGFAQGTEHFELSAMGPGKPMYYTAKFFVWLTMIAMTLLVIHIELQLYRELRTILQKRRRS
>NC_011830.1|WP_005811924.1|4161490_4162201_-|cytochrome-b/b6-domain-containing-protein
MGKEQVYQRFDIHQRIQHMGMFISFFVLTITGLPIKFEQSRLSQGVVSLFGGFDNLFYVHLLGGVLMIFASVYHLIYLVVVPLGGKKKSWAIVPTFKDFKDLIQNLGYFFGFKKEPARFDRYSYKEKFDYWAVFWGMVIMAGSGLMMWYPQFFTLFLPRWVIDSSRYAHTDEAILAISAIFIWHFYNVHFNNRYFPMSKAWYVGTLTREEMEEDHPIELERIEREPNVLSKDKTKE
>NC_011830.1|WP_011460578.1|4160703_4161174_+|MerR-family-transcriptional-regulator
MQQYSIGEVANIAGIAISTLRYYDREGLFPNLDRSEGGTRKFTDTEIETLGIIECLKTSGLSIKEIKLFLDWCQEGNSSLQKRRNLFYERLEVVTKQMEELQKTLNTLRFKCWYYDTALAAGTEEVPKNLPPEEIPEDILAYQRSGCLNNSGHKHL
>NC_011830.1|WP_015944878.1|4160158_4160575_-|cupin-domain-containing-protein
MPNKEVFPKGSQAVANFTGAAFVNMLVPDGSGTYNCQVYDVIFEPGCRNDWHSHPGGQILLCTDGIGYYQEKDQPARRLQRGDVVEIPPQVEHWHGAAPDSSFTHIGISPNTRKGGATWLLPVTDEEYQQATGGNNHV
>NC_011830.1|WP_011460576.1|4158996_4160202_-|iron-containing-alcohol-dehydrogenase
MKNINKQQEEIIMFNMYVPTRFVFGSGRLRELHQQKMPGKKALITISNGKSVRENGALDRTQEQLRLAGVAMVVFDKIGANPTKTAVMEGAKSARDHGCDFIVALGGGSVMDAAKAIAMMATNDGDLWDYVGGKTGKGQALRHEPLPLVCITTTAGTGSEADQWGVVTNEETNEKIGVGGYDASFPVVSIIDPELMVSVPPKFTAYQGFDALFHATEGYISKFASPMSDMYALTAIENVGNYLVRACRDGRDMEAREGMAFANTLSGVVMTVSVTTAEHSLEHAMSAYHPELPHGAGLIMISRAFYEFFIEKHACDQRFVRMAQALGMKDAARPEDFITMLVKLQENCGVADLKMSDYGMTPDEFDKLAANARETMGGLFAANPYAMTHEDCVEVYRKSYR
>NC_011830.1|WP_011460575.1|4158176_4158899_-|RibD-family-protein
MSRPYIFCHMMTSLDGKIMGSYMDTPEGEAAGKAFYNIAFGSNPHYQHQGWLSGRMTTDDNFTFYKPPVLDEEAPPVPEGDFVALPNAPMYYVSVDPSGKLGWENSQLTYEDTTAHVLEVLTEKAGNAYKAFLLKLGISYIIAGKDALDYALAMAKLKSLFGIQSLMLGGGGVLNWSFIQAGMCDELSVLIAAAADGSSETPTLFEARSGLAAESPVGFTLKSAEVKEGGSVWLRYTVNK
>NC_011830.1|WP_011460574.1|4156537_4158025_+|tetratricopeptide-repeat-protein
MSYSIITEYSNQLHQLLVSVSQHLYFDKDGYVTYQKKPLGVNIKSCHKSRKEHLVYYVLRDHFSGTFTFQIATTKRLIPLADFLHYAWSEPKGEEKFIWGMPDSLFIPQMIASEELLSGLEALNVRPLHPPSGFASGVRVIRDIENDLCFFMRETVDYSLEGLNKLRFRVYQYLINSSHRDNKFSNWKAGLTYQSHPRITPVYSDFVNFFPADDPKAPSPIPLNQVPKDKQLEKRTRKSKKATPDYPPFSEEKLSHAQELIYDAWEEPNRQKCLALARKALRISPYCADAYTLLAEKCELLKERQELYTKGVEAGRMALGDSFFQEESGHFWGYLKARPYMRALAGLSECLWKNGLRQEAIESYKELLRLNPNDNQGIRYILINCLLAEGLDGEAEKLLSTYPESSCFMLYSKALLSFRRLKHRKAEASLKEALLSNPHVPPYLLGSKHLPWPLPAYYSPGSIEEAVIYAADACTVWKNTPNALTWLTEKLKSIT
>NC_011830.1|WP_005817554.1|4166164_4166428_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAKLKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII
>NC_011830.1|WP_005817555.1|4166528_4167524_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_011830.1|WP_005817556.1|4167592_4168102_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDPNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_011830.1|WP_015944883.1|4168124_4170542_-|CRISPR-associated-helicase/endonuclease-Cas3
MSRLIPFAQCIARPDEQGGTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRRWQSYIRGQNKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEEMDLPGITRFIEQIYPELRQVPITAEALDQWIDRLYDVLQEASDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRALDEFCRNNGEQVMADIRGQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYEKIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKREMDEQGVAGYLLKGSELLAADERGLSQAAILNTIADAYLVYKQLAARVEPSQLKLLHGMMIPLHKRVEIEKIRHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDELLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_011830.1|WP_085930657.1|4171381_4172562_-|IS3-like-element-ISDha7-family-transposase
MINVSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNWLKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDNLKKGYRHLRPKQPEIIYQMIKKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIGLDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQKFKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRNAVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTIKSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA
>NC_011830.1|WP_015944884.1|4172574_4172805_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELMTHTRFVGHRRVRVK
>NC_011830.1|WP_015944885.1|4174328_4175024_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYKVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_011830.1|WP_015944886.1|4175067_4176018_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTADGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWAHPGVTISGDIAPWLQPLW
>NC_011830.1|WP_015944887.1|4176010_4178068_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFVKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSARETGKIQEAFGVREQPVYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVRTLADWDEFKALYAQGKLELSHLAKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLEFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTESDPEVKEEDGGRDNE
>NC_011830.1|WP_011460590.1|4178225_4178570_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT

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Crispr_ID: NC_011830_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011830_4

4172990-4174143

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	PILER-CR

17 spacers

cas3,cas4,cas1,cas2,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_011830_4

>merge|NC_011830|4|4172990-4174143|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATTCCTTATAGGTAAGCTAACAACCTAACCATTACTGTTGTTATACCGTCAGGTACAGTCGTTTCAATCCCTCATAGGTAAGCTAACACCTTTTCGACCGAATCCACTGGTTGGATATTCGCTTCAATGGTTTCAATCCCTCATAGGTAAGCTAACAACTCTGAAGCAGTTTCGAAGATCAAAGCGGAAATGACCGGTTTCAATCCCTCATAGGTAAGCTAACAACTATAATCATAGTATAAACTTTAATAATCCTAGTGTGTTTCAATCCCTCATAGGTAAGCTAACAACTTGAGGACTACTACAAAAACCTCTATTTGCAAACCCCGTTTCAATCCCTCATAGGTAAGCTAACAACGGGCTTGCCGGCCAAGACGGAAATAAGGCAAACATTAGTTTCAATCCCTCATAGGTAAGCTAACAACACAACGAGGATGAATGGATATCTTACTATGAGTCCGTTTCAATCCCTCATAGGTAAGCTAACAACTGGTCCCGCGAAGAATACCGACAGAGTTATGAGGTTTCAATCCCTCATAGGTAAGCTAACAACCCTCAATATCGGGGCCAGGATGGATGCGATGACAACGGTTTCAATCCCTCATAGGTAAGCTAACAACTTAAATCGTTGAGAGCATCCTGATACTGTTTGCGCGGTTTCAATCCCTCATAGGTAAGCTAACAACCCAGAGATCTCCGGGACCTTTTTAGCCCCTGTTGGAAGGTTTCAATCCCTCATAGGTAAGCTAACAACATTTTTATCTCAGGAGTTGATGAACTTGATTAGATGTTTCAATCCCTCATAGGTAAGCTAACAACCTTGCTCGATTGCCGTATATGATGGCTTTATCTACGGGTTTCAATCCCTCATAGGTAAGCTAACAACCGGCGGGAACCGGGGCTGCTTTTTTATTGACTTCTTGTTTCAATCCCTCATAGGTAAGCTAACAACTATGCGTTTTGATTTTTTGGTTTTCGGCGGAAGCAGGTTTCAATCCCTCATAGGTAAGCTAACAACGCTGGAAACGACTGATTTCTATACAGCGCCATGTTGTTTCAATCCCTCATAGGTAAGCTAACAACAAAAAAGAAAATCCAACTCAAGCCACCGAGGAATCGTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_011830|4|4|4172990-4174143|CRISPRCasFinder
ATTTCAATTCCTTATAGGTAAGCTAACAAC	CTAACCATTACTGTTGTTATACCGTCAGGTACAGTC
GTTTCAATCCCTCATAGGTAAGCTAACACC	TTTTCGACCGAATCCACTGGTTGGATATTCGCTTCAATG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCTGAAGCAGTTTCGAAGATCAAAGCGGAAATGACCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATAATCATAGTATAAACTTTAATAATCCTAGTGT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAGGACTACTACAAAAACCTCTATTTGCAAACCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGGCTTGCCGGCCAAGACGGAAATAAGGCAAACATTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACAACGAGGATGAATGGATATCTTACTATGAGTCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGTCCCGCGAAGAATACCGACAGAGTTATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCTCAATATCGGGGCCAGGATGGATGCGATGACAACG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTAAATCGTTGAGAGCATCCTGATACTGTTTGCGCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCAGAGATCTCCGGGACCTTTTTAGCCCCTGTTGGAAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTTTTATCTCAGGAGTTGATGAACTTGATTAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTTGCTCGATTGCCGTATATGATGGCTTTATCTACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCGGGAACCGGGGCTGCTTTTTTATTGACTTCTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATGCGTTTTGATTTTTTGGTTTTCGGCGGAAGCAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGAAACGACTGATTTCTATACAGCGCCATGTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	AAAAAAGAAAATCCAACTCAAGCCACCGAGGAATC
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_011830|4|4|4172990-4174143|CRT
ATTTCAATTCCTTATAGGTAAGCTAACAAC	CTAACCATTACTGTTGTTATACCGTCAGGTACAGTC
GTTTCAATCCCTCATAGGTAAGCTAACACC	TTTTCGACCGAATCCACTGGTTGGATATTCGCTTCAATG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCTGAAGCAGTTTCGAAGATCAAAGCGGAAATGACCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATAATCATAGTATAAACTTTAATAATCCTAGTGT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAGGACTACTACAAAAACCTCTATTTGCAAACCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGGCTTGCCGGCCAAGACGGAAATAAGGCAAACATTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACAACGAGGATGAATGGATATCTTACTATGAGTCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGTCCCGCGAAGAATACCGACAGAGTTATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCTCAATATCGGGGCCAGGATGGATGCGATGACAACG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTAAATCGTTGAGAGCATCCTGATACTGTTTGCGCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCAGAGATCTCCGGGACCTTTTTAGCCCCTGTTGGAAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTTTTATCTCAGGAGTTGATGAACTTGATTAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTTGCTCGATTGCCGTATATGATGGCTTTATCTACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCGGGAACCGGGGCTGCTTTTTTATTGACTTCTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATGCGTTTTGATTTTTTGGTTTTCGGCGGAAGCAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGAAACGACTGATTTCTATACAGCGCCATGTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	AAAAAAGAAAATCCAACTCAAGCCACCGAGGAATC
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_011830|4|4|4173056-4174143|PILER-CR
GTTTCAATCCCTCATAGGTAAGCTAACACC	TTTTCGACCGAATCCACTGGTTGGATATTCGCTTCAATG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCTGAAGCAGTTTCGAAGATCAAAGCGGAAATGACCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATAATCATAGTATAAACTTTAATAATCCTAGTGT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAGGACTACTACAAAAACCTCTATTTGCAAACCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGGCTTGCCGGCCAAGACGGAAATAAGGCAAACATTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACAACGAGGATGAATGGATATCTTACTATGAGTCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGTCCCGCGAAGAATACCGACAGAGTTATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCTCAATATCGGGGCCAGGATGGATGCGATGACAACG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTAAATCGTTGAGAGCATCCTGATACTGTTTGCGCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCAGAGATCTCCGGGACCTTTTTAGCCCCTGTTGGAAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTTTTATCTCAGGAGTTGATGAACTTGATTAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTTGCTCGATTGCCGTATATGATGGCTTTATCTACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCGGGAACCGGGGCTGCTTTTTTATTGACTTCTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATGCGTTTTGATTTTTTGGTTTTCGGCGGAAGCAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGAAACGACTGATTTCTATACAGCGCCATGTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	AAAAAAGAAAATCCAACTCAAGCCACCGAGGAATC
GTTTCAATCCCTCATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_011830.1\|WP_005817578.1\|4183711_4184497_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_011830.1\|WP_005817554.1\|4166164_4166428_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_011830.1\|WP_015944880.1\|4162206_4162842_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|366912
NC_011830.1\|WP_158304534.1\|4186298_4186472_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944881.1\|4163214_4163454_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_011830.1\|WP_015944887.1\|4176010_4178068_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_011830.1\|WP_015944891.1\|4185526_4185694_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944884.1\|4172574_4172805_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_011830.1\|WP_005811935.1\|4164133_4165009_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_011830.1\|WP_158304533.1\|4185393_4185534_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_005811933.1\|4163504_4163729_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011830.1\|WP_015944890.1\|4184735_4185281_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_011830.1\|WP_015944888.1\|4178559_4178859_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393

Protein	Function_ID	Function_description	E-value
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_011830.1\|WP_005817578.1\|4183711_4184497_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.43003e-34
NC_011830.1\|WP_005817554.1\|4166164_4166428_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.63322e-33
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.37882e-21
NC_011830.1\|WP_015944880.1\|4162206_4162842_-\|molecular-chaperone-DnaJ	gnl\|CDD\|366912	pfam02085, Cytochrom_CIII, Class III cytochrome C family.	4.61335e-08
NC_011830.1\|WP_015944881.1\|4163214_4163454_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	6.02559e-20
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_011830.1\|WP_005811935.1\|4164133_4165009_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	2.21448e-70
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.26685e-58
NC_011830.1\|WP_005811933.1\|4163504_4163729_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	2.1145e-15
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.28451e-36
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.04699e-77
NC_011830.1\|WP_015944890.1\|4184735_4185281_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.95304e-35
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.23402e-76
NC_011830.1\|WP_015944888.1\|4178559_4178859_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.43815e-11

>NC_011830.1|WP_015944884.1|4172574_4172805_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELMTHTRFVGHRRVRVK
>NC_011830.1|WP_085930657.1|4171381_4172562_-|IS3-like-element-ISDha7-family-transposase
MINVSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNWLKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDNLKKGYRHLRPKQPEIIYQMIKKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIGLDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQKFKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRNAVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTIKSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA
>NC_011830.1|WP_015944883.1|4168124_4170542_-|CRISPR-associated-helicase/endonuclease-Cas3
MSRLIPFAQCIARPDEQGGTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRRWQSYIRGQNKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEEMDLPGITRFIEQIYPELRQVPITAEALDQWIDRLYDVLQEASDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRALDEFCRNNGEQVMADIRGQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYEKIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKREMDEQGVAGYLLKGSELLAADERGLSQAAILNTIADAYLVYKQLAARVEPSQLKLLHGMMIPLHKRVEIEKIRHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDELLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_011830.1|WP_005817556.1|4167592_4168102_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDPNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_011830.1|WP_005817555.1|4166528_4167524_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_011830.1|WP_005817554.1|4166164_4166428_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAKLKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII
>NC_011830.1|WP_005811935.1|4164133_4165009_+|DUF3102-domain-containing-protein
MKEGKERSGVAMNPTVPERTSLIIAVEINSIKDQTEKLVLHNFIEIGRRLHEAKALLPHGEWLQWLEESVDFSPNRAAKLMRLYDAYGLPHSSLLDSDAQDQVLSKLSYTQALILLGVPEEERTQLLLDLDIENMSTRELKKAVDKQKQIQQEKERAEQENTALRQALDGVKEANTELAKERDSLKQEAVELRKTQQALQENVEKATLQNKKLKENMNYKSYQRVRNDLAAAQTKLFTSQVAFKYEALERAFKELSYELDLLANLDAQVHAGYMSKLNDFLLKAMRGRMQG
>NC_011830.1|WP_005811933.1|4163504_4163729_-|DUF1659-domain-containing-protein
MAVTSTPLSSALVIVYQAGLTPLGAPVTRQKSLNGLRFDADEQAIYNAAHALFSLSQYSVLDVLNRKTFELLEE
>NC_011830.1|WP_015944881.1|4163214_4163454_-|DUF2922-domain-containing-protein
MAITTTKVVRLTFTTTGGKTFSITIPNPKDDLQQAEAVAVMNSLIESDLFLTAGGSLLGIRDIKVVDTQTNDLYDPPQV
>NC_011830.1|WP_015944880.1|4162206_4162842_-|molecular-chaperone-DnaJ
MNKKKRWAFKGIIFTFFFSFWLFANGAEVLAQLNCNQCHADVANEFKSSVHSSLSCTSCHSDVTTYPHPESAKVDKKKSVAMCTTCHTGRVEDSYQHSFHGKAVFLGSQRSASCVDCHSAHEVLSHNNPNSQVAKENVPQTCAKCHDNPSPGFAQGTEHFELSAMGPGKPMYYTAKFFVWLTMIAMTLLVIHIELQLYRELRTILQKRRRS
>NC_011830.1|WP_015944885.1|4174328_4175024_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYKVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_011830.1|WP_015944886.1|4175067_4176018_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTADGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWAHPGVTISGDIAPWLQPLW
>NC_011830.1|WP_015944887.1|4176010_4178068_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFVKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSARETGKIQEAFGVREQPVYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVRTLADWDEFKALYAQGKLELSHLAKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLEFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTESDPEVKEEDGGRDNE
>NC_011830.1|WP_011460590.1|4178225_4178570_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT
>NC_011830.1|WP_015944888.1|4178559_4178859_-|nucleotidyltransferase-domain-containing-protein
MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIVIDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR
>NC_011830.1|WP_005817578.1|4183711_4184497_-|CRISPR-associated-endoribonuclease-Cas6
MLIQAIPRKDGERQKMNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGNRAFKLFCFSLIQGVYQMDRVNKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRISAGQYKVRENKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGPKELLQLAVDGGIGSKNSQGFGCVEIING
>NC_011830.1|WP_015944890.1|4184735_4185281_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQETDSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAWGKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAENSPLAEHVLYRCQLKSREEDG
>NC_011830.1|WP_158304533.1|4185393_4185534_-|hypothetical-protein
MNKEVLALISKMPETGFVPKCDNVVVFGDMVSLQKEEMYWWEDFEL
>NC_011830.1|WP_015944891.1|4185526_4185694_-|hypothetical-protein
MTDYKKMYFQLAAKVADAMDILLKAQREGEKEFMDGEPFPEGKVMVIQDEGCECE
>NC_011830.1|WP_158304534.1|4186298_4186472_-|hypothetical-protein
MASNSRTFYEYVLAYAEKGAGEIDHIDYFTGEYNGLENLSAEELTEETQGSVLLWSK

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Crispr_ID: NC_011830_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011830_5

4179283-4183304

TypeI-B

Consensus_repeat	Method
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CRT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	PILER-CR
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder

60 spacers

cas8b1,cas7b,cas5,cas3,cas4,cas1,cas6

The CRISPR arrays of NC_011830_5

>merge|NC_011830|5|4179283-4183304|CRT,PILER-CR,CRISPRCasFinder
GAAAAGGTCACTTATAGGTAAGCTAATAACGATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGCGTTTCAATCCCTCATAGGTAAGCTAACAACTGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATGGTTTCAATTCCTCATAGGTAAGCTAACAACTTAGCTTTTGTTATGTACCCTGATGACCTCGATGAGTTTCAATTCCTCATAGGTAAGCTAACAACTGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCATGTTTCAATTCCTCATAGGTAAGCTAACAACCGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGCGTTTCAATTCCTCATAGGTAAGCTAACAACCTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCTGTTTCAATTCCTCATAGGTAAGCTAACAACTGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCTGTTTCAATTCCTCATAGGTAAGCTAACAACCCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTGGTTTCAATTCCTCATAGGTAAGCTAACAACCCGTACACCTCGTAGGCATCACTATAGCGGATTCTATGGGTTTCAATTCCTCATAGGTAAGCTAACAACGTGTTGAAAAAGCAGTATTGGACAGGTGGGAGATGTTTCAATTCCTCATAGGTAAGCTAACAACTAGGATGTCCTGAATACGAAGAGCTGCTGATTCATTGTTTCAATTCCTCATAGGTAAGCTAACAACCGGTGGCACATAATGGCTTTGCGCCCGGGCAGATTTGTTTCAATTCCTCATAGGTAAGCTAACAACGATGGCGGCCATTTCAGCCAGAACATTACCGGGCGGGAGTTTCAATTCCTCATAGGTAAGCTAACAACTACCCACCTTCTTGGGGGCCTGTTTGCCATTCTTTTCTTGTTTCAATTCCTCATAGGTAAGCTAACAACGGGACTAAGGAATCTCACATTTTCAGCGATGACCTCAGTTTCAATTCCTCATAGGTAAGCTAACAACAGGCCAGACATGGCAGCGACGTAAGATTGATTTTGGGTTTCAATTCCTCATAGGTAAGCTAACAACGAAGTCGAGAAAAACACGCCGGTTGACACGAAGGAGCTTGTTTCAATTCCTCATAGGTAAGCTAACAACTGTGATAGGTTTTAGTGATGCTTATAGTTTGTTCTTGTTTCAATTCCTCATAGGTAAGCTAACAACGTGATGAAAAACGATCCCTCACACTTGAAGAGCAGGTTTCAATTCCTCATAGGTAAGCTAACAACTTAATAGGCCTGATGTATTGTCCTCAACAGGCTTATGTTTCAATTCCTCATAGGTAAGCTAACAACAATCTTACCACCGTAGACAGGAGTCCAACCAGATAGAAGTTTCAATTCCTCATAGGTAAGCTAACAACGTCAACATATGCCTCTGAGTCTTTGCCGTCCGCAATATGTTTCAATTCCTCATAGGTAAGCTAACAACTTCCTATGAGCAATATCATATTATCACGGATATTGCGTGTTTCAATTCCTCATAGGTAAGCTAACAACCGGTAATAAAGCAAGAACGTTAACCGCGAGGCACGATTGTTTCAATTCCTCATAGGTAAGCTAACAACAGTAGTGTATTGGGTAGTTGGACGGTATTGCAATATAGGTTTCAATTCCTCATAGGTAAGCTAACAACAAAGGCAGGGATTTTTTTACCTTGCCTAGATTATAGTTTCAATTCCTCATAGGTAAGCTAACAACGGAGCGTGAGGGCCACAACGACAACAAAGGTCACTGGGTTTCAATTCCTCATAGGTAAGCTAACAACAGCTAATCCACATCCCCACAGGCAGGCCGGTCATGGTGAGTTTCAATTCCTCATAGGTAAGCTAACAACCTTATGGACCACAGGGCCAGGGCAAGGCTGCGGTAGTTTCAATTCCTCATAGGTAAGCTAACAACGGGAAACGAACTCTATGAGTTTGTAGAAGGATTATCGCCAGTTTCAATTCCTCATAGGTAAGCTAACAACGCAACGTCAATCACCCTCAGTGTCTCTTTTCTGAAGTTTCAATTCCTCATAGGTAAGCTAACAACTGATCTTACTCATGCGGGAGGTTTTGAGGAAATCGTGTTTCAATTCCTCATAGGTAAGCTAACAACTAGGTACAACGAAAAGGCTTACGATAGAATAGAAAGTTTCAATTCCTCATAGGTAAGCTAACAACACAGGTCAAAGGATTACATCGATAGGCTTTGCGATGTTTCAATTCCTCATAGGTAAGCTAACAACGAAAGTGAGGAAGGCTCAGTATGACAGAACGTGAGATGTTTCAATTCCTCATAGGTAAGCTAACAACATGCAGTCTTTTGAGTTATGAGGGCTTTGAGGATTGTGTGTTTCAATTCCTCATAGGTAAGCTAACAACTCCGTCACTATCATAGGGGATGGGGTGGGACTTGCGTTTCAATTCCTCATAGGTAAGCTAACAACCTCCTTATGTGTTATCTACCAGGAGTACGAGGATATAGTTTCAATTCCTCATAGGTAAGCTAACAACTCGCCATCCTAATCCTCCTTTTCTTCCTGCTTCTGTTTCAATTCCTCATAGGTAAGCTAACAACATTGAAAGGCTTGCTTTATCGTGTATCATGTACTTGTGTTTCAATTCCTCATAGGTAAGCTAACAACCAAAAAATTTGGAAAGCTTATGGACAAGGTCTCGAAGTTTCAATTCCTCATAGGTAAGCTAACAACTCGGGTCTTAGGGTTTTGGATTTTACCTCACGATGTTTCAATTCCTCATAGGTAAGCTAACAACCATGGAAATAGGCCGAAACATAGCGAAATATCGGAGTTTCAATTCCTCATAGGTAAGCTAACAACTTGCAAAATACGTCCCCGATTTGTGAGGATTAATCCTCGTTTCAATTCCTCATAGGTAAGCTAACAACATGTATTTGCCGTGGTCCTGGTTAGGTTGGTGAAGTTTCAATTCCTCATAGGTAAGCTAACAACTCCCGGTTGTCGAGAAAGATGGGCGCCGATACTCCGGTTTCAATTCCTCATAGGTAAGCTAACAACTGCCTGTTAGCTGCGCCAGTTCATCTATGCTCATGTGTTTCAATTCCTCATAGGTAAGCTAACAACAAGTATCTTAGGCGTTAGGAGGTACACACAATGGCGTTTCAATTCCTCATAGGTAAGCTAACAACACAATCAGGGCGCTCAGAAAGGTAAAAATAAAGCGGTTTCAATTCCTCATAGGTAAGCTAACAACTTAGCTAAACTCTACGGGGATGGTCGGCCATTGGAGTTTCAATTCCTCATAGGTAAGCTAACAACTGAGATAAAATACAAAGTTCCACCGATATCAAAAAGTTTCAATTCCTCATAGGTAAGCTAACAACTGCCCCCACACTGAATAGGCAAATAGCATATTGAGTTTCAATTCCTCATAGGTAAGCTAACAACGGGGAATTTAGAATCCTCATGATTGGCCATAAGAAGGTTTCAATTCCTCATAGGTAAGCTAACAACAAGACGTTCACGCGATGTCGCAGCGCCATAATCACAGGGTTTCAATTCCTCATAGGTAAGCTAACAACGGAACCGCATGAAGATTTATTTATGCCAGAGCGAGAGTTTCAATTCCTCATAGGTAAGCTAACAACCTGGCCAGCGCCTTTGACGGAGCGTTTGAACTGGCGGAAGTTTCAATTCCTCATAGGTAAGCTAACAACGAGGCGCGGAAGGATCTATGCCCACGAAATGAGTGATGTTTCAATTCCTCATAGGTAAGCTAACAACGTCTACCCCGTGATCAGGAATGATGGAAAGGAAGTGAGAGTTTCAATTCCTCATAGGTAAGCTAACAACTACACTCACTCCATTATCACTTACGATGTAAAAGCCGTTTCAATTCCTCATAGGTAAGCTAACAACTTCAAATACCTTCTTCACATGCTCATCTGAACAGGCGTTTCAATTCCTCATAGGTAAGCTAACAAC

>NC_011830|5|5|4179283-4183304|CRT
GAAAAGGTCACTTATAGGTAAGCTAATAAC	GATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTTTTGTTATGTACCCTGATGACCTCGATGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCGTACACCTCGTAGGCATCACTATAGCGGATTCTATGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTGGCACATAATGGCTTTGCGCCCGGGCAGATTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GATGGCGGCCATTTCAGCCAGAACATTACCGGGCGGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACCCACCTTCTTGGGGGCCTGTTTGCCATTCTTTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGACTAAGGAATCTCACATTTTCAGCGATGACCTCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGGCCAGACATGGCAGCGACGTAAGATTGATTTTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAGTCGAGAAAAACACGCCGGTTGACACGAAGGAGCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTGATAGGTTTTAGTGATGCTTATAGTTTGTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGATGAAAAACGATCCCTCACACTTGAAGAGCAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAATAGGCCTGATGTATTGTCCTCAACAGGCTTAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AATCTTACCACCGTAGACAGGAGTCCAACCAGATAGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCAACATATGCCTCTGAGTCTTTGCCGTCCGCAATAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCCTATGAGCAATATCATATTATCACGGATATTGCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTAATAAAGCAAGAACGTTAACCGCGAGGCACGATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGTAGTGTATTGGGTAGTTGGACGGTATTGCAATATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAAGGCAGGGATTTTTTTACCTTGCCTAGATTATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAGCGTGAGGGCCACAACGACAACAAAGGTCACTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGCTAATCCACATCCCCACAGGCAGGCCGGTCATGGTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTTATGGACCACAGGGCCAGGGCAAGGCTGCGGTA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGAAACGAACTCTATGAGTTTGTAGAAGGATTATCGCCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAACGTCAATCACCCTCAGTGTCTCTTTTCTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGATCTTACTCATGCGGGAGGTTTTGAGGAAATCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGTACAACGAAAAGGCTTACGATAGAATAGAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAGGTCAAAGGATTACATCGATAGGCTTTGCGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAAGTGAGGAAGGCTCAGTATGACAGAACGTGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGCAGTCTTTTGAGTTATGAGGGCTTTGAGGATTGTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCGTCACTATCATAGGGGATGGGGTGGGACTTGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCCTTATGTGTTATCTACCAGGAGTACGAGGATATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGCCATCCTAATCCTCCTTTTCTTCCTGCTTCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTGAAAGGCTTGCTTTATCGTGTATCATGTACTTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAAAAATTTGGAAAGCTTATGGACAAGGTCTCGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGGGTCTTAGGGTTTTGGATTTTACCTCACGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CATGGAAATAGGCCGAAACATAGCGAAATATCGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTGCAAAATACGTCCCCGATTTGTGAGGATTAATCCTC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGTATTTGCCGTGGTCCTGGTTAGGTTGGTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCCGGTTGTCGAGAAAGATGGGCGCCGATACTCCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCTGTTAGCTGCGCCAGTTCATCTATGCTCATGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGTATCTTAGGCGTTAGGAGGTACACACAATGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAATCAGGGCGCTCAGAAAGGTAAAAATAAAGCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTAAACTCTACGGGGATGGTCGGCCATTGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGAGATAAAATACAAAGTTCCACCGATATCAAAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCCCCACACTGAATAGGCAAATAGCATATTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGGAATTTAGAATCCTCATGATTGGCCATAAGAAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGACGTTCACGCGATGTCGCAGCGCCATAATCACAGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAACCGCATGAAGATTTATTTATGCCAGAGCGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTGGCCAGCGCCTTTGACGGAGCGTTTGAACTGGCGGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAGGCGCGGAAGGATCTATGCCCACGAAATGAGTGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCTACCCCGTGATCAGGAATGATGGAAAGGAAGTGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACACTCACTCCATTATCACTTACGATGTAAAAGCC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCAAATACCTTCTTCACATGCTCATCTGAACAGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC

>NC_011830|5|5|4179352-4183304|PILER-CR
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTTTTGTTATGTACCCTGATGACCTCGATGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCGTACACCTCGTAGGCATCACTATAGCGGATTCTATGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTGGCACATAATGGCTTTGCGCCCGGGCAGATTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GATGGCGGCCATTTCAGCCAGAACATTACCGGGCGGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACCCACCTTCTTGGGGGCCTGTTTGCCATTCTTTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGACTAAGGAATCTCACATTTTCAGCGATGACCTCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGGCCAGACATGGCAGCGACGTAAGATTGATTTTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAGTCGAGAAAAACACGCCGGTTGACACGAAGGAGCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTGATAGGTTTTAGTGATGCTTATAGTTTGTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGATGAAAAACGATCCCTCACACTTGAAGAGCAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAATAGGCCTGATGTATTGTCCTCAACAGGCTTAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AATCTTACCACCGTAGACAGGAGTCCAACCAGATAGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCAACATATGCCTCTGAGTCTTTGCCGTCCGCAATAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCCTATGAGCAATATCATATTATCACGGATATTGCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTAATAAAGCAAGAACGTTAACCGCGAGGCACGATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGTAGTGTATTGGGTAGTTGGACGGTATTGCAATATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAAGGCAGGGATTTTTTTACCTTGCCTAGATTATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAGCGTGAGGGCCACAACGACAACAAAGGTCACTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGCTAATCCACATCCCCACAGGCAGGCCGGTCATGGTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTTATGGACCACAGGGCCAGGGCAAGGCTGCGGTA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGAAACGAACTCTATGAGTTTGTAGAAGGATTATCGCCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAACGTCAATCACCCTCAGTGTCTCTTTTCTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGATCTTACTCATGCGGGAGGTTTTGAGGAAATCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGTACAACGAAAAGGCTTACGATAGAATAGAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAGGTCAAAGGATTACATCGATAGGCTTTGCGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAAGTGAGGAAGGCTCAGTATGACAGAACGTGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGCAGTCTTTTGAGTTATGAGGGCTTTGAGGATTGTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCGTCACTATCATAGGGGATGGGGTGGGACTTGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCCTTATGTGTTATCTACCAGGAGTACGAGGATATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGCCATCCTAATCCTCCTTTTCTTCCTGCTTCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTGAAAGGCTTGCTTTATCGTGTATCATGTACTTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAAAAATTTGGAAAGCTTATGGACAAGGTCTCGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGGGTCTTAGGGTTTTGGATTTTACCTCACGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CATGGAAATAGGCCGAAACATAGCGAAATATCGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTGCAAAATACGTCCCCGATTTGTGAGGATTAATCCTC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGTATTTGCCGTGGTCCTGGTTAGGTTGGTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCCGGTTGTCGAGAAAGATGGGCGCCGATACTCCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCTGTTAGCTGCGCCAGTTCATCTATGCTCATGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGTATCTTAGGCGTTAGGAGGTACACACAATGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAATCAGGGCGCTCAGAAAGGTAAAAATAAAGCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTAAACTCTACGGGGATGGTCGGCCATTGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGAGATAAAATACAAAGTTCCACCGATATCAAAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCCCCACACTGAATAGGCAAATAGCATATTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGGAATTTAGAATCCTCATGATTGGCCATAAGAAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGACGTTCACGCGATGTCGCAGCGCCATAATCACAGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAACCGCATGAAGATTTATTTATGCCAGAGCGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTGGCCAGCGCCTTTGACGGAGCGTTTGAACTGGCGGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAGGCGCGGAAGGATCTATGCCCACGAAATGAGTGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCTACCCCGTGATCAGGAATGATGGAAAGGAAGTGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACACTCACTCCATTATCACTTACGATGTAAAAGCC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCAAATACCTTCTTCACATGCTCATCTGAACAGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC

>NC_011830|5|5|4179352-4183304|CRISPRCasFinder
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTTTTGTTATGTACCCTGATGACCTCGATGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCGTACACCTCGTAGGCATCACTATAGCGGATTCTATGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTGGCACATAATGGCTTTGCGCCCGGGCAGATTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GATGGCGGCCATTTCAGCCAGAACATTACCGGGCGGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACCCACCTTCTTGGGGGCCTGTTTGCCATTCTTTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGACTAAGGAATCTCACATTTTCAGCGATGACCTCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGGCCAGACATGGCAGCGACGTAAGATTGATTTTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAGTCGAGAAAAACACGCCGGTTGACACGAAGGAGCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTGATAGGTTTTAGTGATGCTTATAGTTTGTTCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGATGAAAAACGATCCCTCACACTTGAAGAGCAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAATAGGCCTGATGTATTGTCCTCAACAGGCTTAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AATCTTACCACCGTAGACAGGAGTCCAACCAGATAGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCAACATATGCCTCTGAGTCTTTGCCGTCCGCAATAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCCTATGAGCAATATCATATTATCACGGATATTGCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGGTAATAAAGCAAGAACGTTAACCGCGAGGCACGATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGTAGTGTATTGGGTAGTTGGACGGTATTGCAATATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAAGGCAGGGATTTTTTTACCTTGCCTAGATTATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAGCGTGAGGGCCACAACGACAACAAAGGTCACTGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AGCTAATCCACATCCCCACAGGCAGGCCGGTCATGGTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTTATGGACCACAGGGCCAGGGCAAGGCTGCGGTA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGAAACGAACTCTATGAGTTTGTAGAAGGATTATCGCCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAACGTCAATCACCCTCAGTGTCTCTTTTCTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGATCTTACTCATGCGGGAGGTTTTGAGGAAATCGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGTACAACGAAAAGGCTTACGATAGAATAGAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAGGTCAAAGGATTACATCGATAGGCTTTGCGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAAAGTGAGGAAGGCTCAGTATGACAGAACGTGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGCAGTCTTTTGAGTTATGAGGGCTTTGAGGATTGTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCGTCACTATCATAGGGGATGGGGTGGGACTTGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCCTTATGTGTTATCTACCAGGAGTACGAGGATATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGCCATCCTAATCCTCCTTTTCTTCCTGCTTCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTGAAAGGCTTGCTTTATCGTGTATCATGTACTTGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAAAAATTTGGAAAGCTTATGGACAAGGTCTCGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCGGGTCTTAGGGTTTTGGATTTTACCTCACGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CATGGAAATAGGCCGAAACATAGCGAAATATCGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTGCAAAATACGTCCCCGATTTGTGAGGATTAATCCTC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGTATTTGCCGTGGTCCTGGTTAGGTTGGTGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCCGGTTGTCGAGAAAGATGGGCGCCGATACTCCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCTGTTAGCTGCGCCAGTTCATCTATGCTCATGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGTATCTTAGGCGTTAGGAGGTACACACAATGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACAATCAGGGCGCTCAGAAAGGTAAAAATAAAGCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTAGCTAAACTCTACGGGGATGGTCGGCCATTGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGAGATAAAATACAAAGTTCCACCGATATCAAAAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCCCCCACACTGAATAGGCAAATAGCATATTGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGGAATTTAGAATCCTCATGATTGGCCATAAGAAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAGACGTTCACGCGATGTCGCAGCGCCATAATCACAGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGAACCGCATGAAGATTTATTTATGCCAGAGCGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTGGCCAGCGCCTTTGACGGAGCGTTTGAACTGGCGGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GAGGCGCGGAAGGATCTATGCCCACGAAATGAGTGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTCTACCCCGTGATCAGGAATGATGGAAAGGAAGTGAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TACACTCACTCCATTATCACTTACGATGTAAAAGCC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTCAAATACCTTCTTCACATGCTCATCTGAACAGGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_011830.1\|WP_005817578.1\|4183711_4184497_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_011830.1\|WP_015944887.1\|4176010_4178068_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_011830.1\|WP_015944892.1\|4186628_4187129_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_011830.1\|WP_015944894.1\|4188273_4189107_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_011830.1\|WP_158304533.1\|4185393_4185534_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944884.1\|4172574_4172805_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944888.1\|4178559_4178859_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_011830.1\|WP_015944897.1\|4191474_4192695_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_011830.1\|WP_158304534.1\|4186298_4186472_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944891.1\|4185526_4185694_-\|hypothetical-protein	unknown	unknown	unknown
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011830.1\|WP_015944893.1\|4187361_4188258_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_011830.1\|WP_015944890.1\|4184735_4185281_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_011830.1\|WP_015944896.1\|4190151_4190811_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NC_011830.1\|WP_005817555.1\|4166528_4167524_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_011830.1\|WP_005817578.1\|4183711_4184497_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.43003e-34
NC_011830.1\|WP_015944885.1\|4174328_4175024_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.37882e-21
NC_011830.1\|WP_015944892.1\|4186628_4187129_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.03358e-39
NC_011830.1\|WP_011460590.1\|4178225_4178570_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_011830.1\|WP_015944896.1\|4190151_4190811_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.68337e-64
NC_011830.1\|WP_015944888.1\|4178559_4178859_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.43815e-11
NC_011830.1\|WP_015944897.1\|4191474_4192695_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.62699e-22
NC_011830.1\|WP_085930657.1\|4171381_4172562_-\|IS3-like-element-ISDha7-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.26685e-58
NC_011830.1\|WP_015944894.1\|4188273_4189107_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	3.71636e-06
NC_011830.1\|WP_015944883.1\|4168124_4170542_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.28451e-36
NC_011830.1\|WP_005817556.1\|4167592_4168102_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.04699e-77
NC_011830.1\|WP_015944893.1\|4187361_4188258_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.43733e-32
NC_011830.1\|WP_015944890.1\|4184735_4185281_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.95304e-35
NC_011830.1\|WP_015944886.1\|4175067_4176018_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.23402e-76

>NC_011830.1|WP_015944888.1|4178559_4178859_-|nucleotidyltransferase-domain-containing-protein
MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIVIDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR
>NC_011830.1|WP_011460590.1|4178225_4178570_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT
>NC_011830.1|WP_015944887.1|4176010_4178068_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFVKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSARETGKIQEAFGVREQPVYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVRTLADWDEFKALYAQGKLELSHLAKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLEFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTESDPEVKEEDGGRDNE
>NC_011830.1|WP_015944886.1|4175067_4176018_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTADGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWAHPGVTISGDIAPWLQPLW
>NC_011830.1|WP_015944885.1|4174328_4175024_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYKVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_011830.1|WP_015944884.1|4172574_4172805_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELMTHTRFVGHRRVRVK
>NC_011830.1|WP_085930657.1|4171381_4172562_-|IS3-like-element-ISDha7-family-transposase
MINVSKNGKRYNQEFKHDIIRLITEENRSVSSVVQDFGVNEQTVRNWLKQTKERQDPIKTKIAELEAELKARDKKIADQELTIDNLKKGYRHLRPKQPEIIYQMIKKASSSSCPVEKMCETLEVSRSGYYDWDRREPSKRQKENETILKVMKESHTKAQAMIGLDKLWSDVKEAGFQCGRNRVYRLQKQHGLYSVRKKPYRVCLTDSNHDLPKAPNLLNQKFKVEHPNKVWVTDITEFKTAKGSKLYLAAIKDLFHKEIVGWALAEHMRTELCLEALRNAVKRHRPLKGLIHHSDQGRQYCSTVYVEELKHWGMIRSMSRKGNPFDNACAESFFSTIKSERLHHKTYKDIEEARRDIFWYIECFYNRQRRHQALGNLTPAAFLKKHCETQKAA
>NC_011830.1|WP_015944883.1|4168124_4170542_-|CRISPR-associated-helicase/endonuclease-Cas3
MSRLIPFAQCIARPDEQGGTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRRWQSYIRGQNKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEEMDLPGITRFIEQIYPELRQVPITAEALDQWIDRLYDVLQEASDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRALDEFCRNNGEQVMADIRGQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYEKIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKREMDEQGVAGYLLKGSELLAADERGLSQAAILNTIADAYLVYKQLAARVEPSQLKLLHGMMIPLHKRVEIEKIRHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDELLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_011830.1|WP_005817556.1|4167592_4168102_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDPNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_011830.1|WP_005817555.1|4166528_4167524_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_011830.1|WP_005817578.1|4183711_4184497_-|CRISPR-associated-endoribonuclease-Cas6
MLIQAIPRKDGERQKMNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGNRAFKLFCFSLIQGVYQMDRVNKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRISAGQYKVRENKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGPKELLQLAVDGGIGSKNSQGFGCVEIING
>NC_011830.1|WP_015944890.1|4184735_4185281_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQETDSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAWGKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAENSPLAEHVLYRCQLKSREEDG
>NC_011830.1|WP_158304533.1|4185393_4185534_-|hypothetical-protein
MNKEVLALISKMPETGFVPKCDNVVVFGDMVSLQKEEMYWWEDFEL
>NC_011830.1|WP_015944891.1|4185526_4185694_-|hypothetical-protein
MTDYKKMYFQLAAKVADAMDILLKAQREGEKEFMDGEPFPEGKVMVIQDEGCECE
>NC_011830.1|WP_158304534.1|4186298_4186472_-|hypothetical-protein
MASNSRTFYEYVLAYAEKGAGEIDHIDYFTGEYNGLENLSAEELTEETQGSVLLWSK
>NC_011830.1|WP_015944892.1|4186628_4187129_-|HAMP-domain-containing-histidine-kinase
MFLMAKLDDGQIRFNQERFDLAALGRQIIHEASLQTGGKRLDFELSCVEEVACFCGDRFYLQQAVENIVANAIRHSNDNGKIGISITVEKGMYHFAVSDTGSGIEPQDLPHIFEPYYTKKQAGFHTTGLGLGLAISREIVRRLGGTITVASRPGEGAVFTLLLPPS
>NC_011830.1|WP_015944893.1|4187361_4188258_-|HAMP-domain-containing-histidine-kinase
MLPWILCAGLSLAVAVLCVKIRLLHQSMDEIRVEFKERLTLDTNTLISISSTDPRARRLAADINTQLRLLRRQRRHYLNGDRELKEAVTNISHDLRTPLTAICGYLELLEEEEKSAAAARYLAFIANRTETLKQLTEELFRYSLILAARDTMQMELLSVKGVLEESLAAVYPALLERRITPVVHLPEQPVKRRLDKGALSRIFGNILNNALKYSDGDLEVRLRDNGEVLFTNTAAALDEVQVGKLFNRFFTVEAARHSTGLGLAIAKTLVEQMNGEITAHYREQKLSICIRFPLAEPD
>NC_011830.1|WP_015944894.1|4188273_4189107_-|ABC-transporter-permease-subunit
MGNLLTAGFCRLGKNKVFWLGMLAMLAISTGMMLNASRQAGAMMAEGYLRTLDDYYFKLAPVIGLCCAIFASLFIGTEHSEGTLRNKIVVGRTRPAIYLANYVICFAAGVCFVALWLLGGLVGIPVLGVWEMGTNGVLLYVVTALCFTGAWTGMFTLLAMLSSNKATTAVLAILLALGLLVAAALLYNSLCVPELNSGMVITKNGMEMAEPTPNPNYVSGMKRTLYQLVLDCLPSGQGILMANQELGRPLLSLAASGVIALATTAAGVFAFGKKDLK
>NC_011830.1|WP_015944896.1|4190151_4190811_-|response-regulator-transcription-factor
MRILIIEDDLHIGNMLEEVLVKKGYAVARAYSGTEALLALPVEKPDLILLDLMLPGLSGEDIMPKLKGIPVIVVSAKTDIDDKVGLLLEGAVDYITKPFHMKELLARVVVGLRKGPEPDKSVLAFADIRLYTALHTVWVAEKEVRLTRTEYAILKLLMQNPAQVITKSLLLDRISEDTPDCTESSLKMHISHLRRKLREASGQDYIEAVWGIGFKLKTD
>NC_011830.1|WP_015944897.1|4191474_4192695_+|restriction-endonuclease-subunit-S
MGEIVKKLKSYPLSRDVETKERTGYRYIHYGDIHKQIADLIVQDEDLPSIKEGDYIPLNQGDLVLADVSEDYTGIAEPSIILHEPKTKIIAGLHTIAIRPQSATSLYLYYLLHTERFKKFGSHVGTGLKVFGITFNNLSLFQIKTPSFPEQTAIGNFFRTLDDTITLHKRKLDKLKELKNGYLQKLFPQPGEDVPRVRFAGFNEPWEVRSFENILAPAVASNTLSRAELSYEKGSIKNIHYGDILVRFGVYIDIARDPIPCIANGRIIDYKNKLLQEGDVIFADTAEDETVGKAVEITNISNFQVVSGLHTMAYRPKIKMSPYYLGYYLNSHSFRYQLLPLMQGVKVLSLSRKNLSKTLIRYPAVLSEQSQIGDFLRNLDEQIFTLYNKLGKLKQLKSFYLQKMFI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011830_1	1.26\|2347738\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347738-2347771	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	121992-122025	6	0.824
NC_011830_1	1.26\|2347738\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347738-2347771	34	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	141785-141818	6	0.824
NC_011830_1	1.26\|2347738\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347738-2347771	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	134071-134104	6	0.824
NC_011830_1	1.26\|2347738\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347738-2347771	34	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	236636-236669	6	0.824
NC_011830_1	1.43\|2348889\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2348889-2348921	33	MN693469	Marine virus AFVG_25M404, complete genome	40900-40932	6	0.818
NC_011830_1	1.19\|2347269\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347269-2347301	33	NZ_CP033050	Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence	160366-160398	8	0.758
NC_011830_1	1.20\|2347335\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347335-2347367	33	NZ_CP033050	Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence	160366-160398	8	0.758
NC_011830_1	1.25\|2347671\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347671-2347704	34	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	824493-824526	8	0.765
NC_011830_2	2.19\|2363086\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2363086-2363118	33	NC_041979	Escherichia coli O157 typing phage 1, complete genome	83813-83845	8	0.758
NC_011830_2	2.19\|2363086\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2363086-2363118	33	KP869113	Escherichia coli O157 typing phage 15, partial genome	13043-13075	8	0.758
NC_011830_2	2.53\|2365374\|35\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2365374-2365408	35	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	225719-225753	8	0.771
NC_011830_2	2.58\|2365712\|35\|NC_011830\|CRISPRCasFinder,CRT	2365712-2365746	35	NZ_CP033067	Pseudoalteromonas agarivorans strain Hao 2018 plasmid unnamed, complete sequence	67288-67322	8	0.771
NC_011830_5	5.5\|4179582\|36\|NC_011830\|CRT,PILER-CR,CRISPRCasFinder	4179582-4179617	36	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	11679-11714	8	0.778
NC_011830_5	5.5\|4179582\|36\|NC_011830\|CRT,PILER-CR,CRISPRCasFinder	4179582-4179617	36	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	11679-11714	8	0.778
NC_011830_5	5.5\|4179582\|36\|NC_011830\|CRT,PILER-CR,CRISPRCasFinder	4179582-4179617	36	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	11679-11714	8	0.778
NC_011830_1	1.19\|2347269\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347269-2347301	33	KM236242	Escherichia phage Pollock, complete genome	34033-34065	9	0.727
NC_011830_1	1.20\|2347335\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347335-2347367	33	KM236242	Escherichia phage Pollock, complete genome	34033-34065	9	0.727
NC_011830_2	2.14\|2362750\|33\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2362750-2362782	33	AJ297913	Uncultured bacterium plasmid pIPO2T, complete sequence	15535-15567	9	0.727
NC_011830_2	2.43\|2364701\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2364701-2364734	34	MF418016	Bacillus phage vB_BceM-HSE3, complete genome	26270-26303	9	0.735
NC_011830_2	2.58\|2365712\|35\|NC_011830\|CRISPRCasFinder,CRT	2365712-2365746	35	KY779849	Staphylococcus phage qdsa002, complete genome	71382-71416	9	0.743
NC_011830_2	2.58\|2365712\|35\|NC_011830\|CRISPRCasFinder,CRT	2365712-2365746	35	NC_019448	Staphylococcus phage GH15, complete genome	68019-68053	9	0.743
NC_011830_1	1.26\|2347738\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2347738-2347771	34	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	194480-194513	10	0.706
NC_011830_2	2.25\|2363492\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2363492-2363525	34	MN062188	Proteus phage Saba, complete genome	18569-18602	10	0.706
NC_011830_2	2.58\|2365712\|35\|NC_011830\|CRISPRCasFinder,CRT	2365712-2365746	35	NC_011759	Yersinia pseudotuberculosis pGDT4 plasmid	64547-64581	10	0.714
NC_011830_3	3.5\|4165822\|36\|NC_011830\|CRISPRCasFinder,CRT	4165822-4165857	36	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	36152-36187	10	0.722
NC_011830_3	3.12\|4165823\|37\|NC_011830\|PILER-CR	4165823-4165859	37	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	36152-36188	10	0.73
NC_011830_2	2.20\|2363152\|34\|NC_011830\|PILER-CR,CRISPRCasFinder,CRT	2363152-2363185	34	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	74024-74057	11	0.676

1. spacer 1.26|2347738|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 6, identity: 0.824

ccactg-ctaagatatactttaaaaatcaatgggt	CRISPR spacer
-cactgatcaagatatactttaaaattaaatggct	Protospacer
 ***** ..**************** * ***** *

2. spacer 1.26|2347738|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 6, identity: 0.824

ccactg-ctaagatatactttaaaaatcaatgggt	CRISPR spacer
-cactgatcaagatatactttaaaattaaatggct	Protospacer
 ***** ..**************** * ***** *

3. spacer 1.26|2347738|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 6, identity: 0.824

ccactg-ctaagatatactttaaaaatcaatgggt	CRISPR spacer
-cactgatcaagatatactttaaaattaaatggct	Protospacer
 ***** ..**************** * ***** *

4. spacer 1.26|2347738|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 6, identity: 0.824

ccactg-ctaagatatactttaaaaatcaatgggt	CRISPR spacer
-cactgatcaagatatactttaaaattaaatggct	Protospacer
 ***** ..**************** * ***** *

5. spacer 1.43|2348889|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to MN693469 (Marine virus AFVG_25M404, complete genome) position: , mismatch: 6, identity: 0.818

cctctcgggtggaccgacttagatgcctaggga	CRISPR spacer
cccgtagggtggacagacttaaatgcctaggca	Protospacer
**. * ******** ******.********* *

6. spacer 1.19|2347269|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

aagcgaatcattttgattggttaataattcaac	CRISPR spacer
atctgtatcaatttgattgattaataattcttc	Protospacer
*  .* **** ********.**********  *

7. spacer 1.20|2347335|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

aagcgaatcattttgattggttaataattcaac	CRISPR spacer
atctgtatcaatttgattgattaataattcttc	Protospacer
*  .* **** ********.**********  *

8. spacer 1.25|2347671|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

atcaaggcgtcctgcccatcggctttacggccaa	CRISPR spacer
atgcggcgggccggccgatcggctttacggccaa	Protospacer
**  .*  * ** *** *****************

9. spacer 2.19|2363086|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NC_041979 (Escherichia coli O157 typing phage 1, complete genome) position: , mismatch: 8, identity: 0.758

tagaatttgtggtaacgccttttctaatctttc	CRISPR spacer
cactaaatgtggtaacgccttttcttgtctttg	Protospacer
.*  *  ****************** .*****

10. spacer 2.19|2363086|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to KP869113 (Escherichia coli O157 typing phage 15, partial genome) position: , mismatch: 8, identity: 0.758

tagaatttgtggtaacgccttttctaatctttc	CRISPR spacer
cactaaatgtggtaacgccttttcttgtctttg	Protospacer
.*  *  ****************** .*****

11. spacer 2.53|2365374|35|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

gcctatagccgctgtgtcttccagattatacgctg	CRISPR spacer
gcctattgcggctgtgtcttccagacgatggtcgg	Protospacer
****** ** ***************. **.  * *

12. spacer 2.58|2365712|35|NC_011830|CRISPRCasFinder,CRT matches to NZ_CP033067 (Pseudoalteromonas agarivorans strain Hao 2018 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.771

acaacatggtcatgtagctttttt-acgcgacgttc	CRISPR spacer
acaacatggcgatgtagcttttttaatagaacatt-	Protospacer
*********. ************* *.. .**.**

13. spacer 5.5|4179582|36|NC_011830|CRT,PILER-CR,CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

14. spacer 5.5|4179582|36|NC_011830|CRT,PILER-CR,CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

15. spacer 5.5|4179582|36|NC_011830|CRT,PILER-CR,CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

16. spacer 1.19|2347269|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to KM236242 (Escherichia phage Pollock, complete genome) position: , mismatch: 9, identity: 0.727

aagcgaatcattttgattggttaataattcaac	CRISPR spacer
agctaactcatttggattagttaataattcatt	Protospacer
*. ..* ****** ****.************ .

17. spacer 1.20|2347335|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to KM236242 (Escherichia phage Pollock, complete genome) position: , mismatch: 9, identity: 0.727

aagcgaatcattttgattggttaataattcaac	CRISPR spacer
agctaactcatttggattagttaataattcatt	Protospacer
*. ..* ****** ****.************ .

18. spacer 2.14|2362750|33|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to AJ297913 (Uncultured bacterium plasmid pIPO2T, complete sequence) position: , mismatch: 9, identity: 0.727

cgtcagcgcctttgccgacaggctttccgatat-	CRISPR spacer
ttccagcgccttttccgacagg-ttttcaacgtc	Protospacer
. .********** ******** ***.*.*..*

19. spacer 2.43|2364701|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to MF418016 (Bacillus phage vB_BceM-HSE3, complete genome) position: , mismatch: 9, identity: 0.735

tgatacataaagttatcgatgtaggttatgttat	CRISPR spacer
aaattaataaagctatcgatgaaggttatgaggt	Protospacer
 .**  ******.******** ********  .*

20. spacer 2.58|2365712|35|NC_011830|CRISPRCasFinder,CRT matches to KY779849 (Staphylococcus phage qdsa002, complete genome) position: , mismatch: 9, identity: 0.743

acaacatggtcatgtagcttttttacgcgacgttc	CRISPR spacer
acaatatggtcatgtagcttttgtagagaaagtat	Protospacer
****.***************** ** . .* ** .

21. spacer 2.58|2365712|35|NC_011830|CRISPRCasFinder,CRT matches to NC_019448 (Staphylococcus phage GH15, complete genome) position: , mismatch: 9, identity: 0.743

acaacatggtcatgtagcttttttacgcgacgttc	CRISPR spacer
acaatatggtcatgtagcttttgtagagaaagtat	Protospacer
****.***************** ** . .* ** .

22. spacer 1.26|2347738|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ccactgctaagatatactttaaaaatcaatgggt	CRISPR spacer
ctctgatcaagatatactttaaaattaaatggct	Protospacer
*. . ...**************** * ***** *

23. spacer 2.25|2363492|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to MN062188 (Proteus phage Saba, complete genome) position: , mismatch: 10, identity: 0.706

---ataaaggccaacacgatagcaaacaaggcgacat	CRISPR spacer
cacgctagg---aacacgataacaaaaaaggcgacaa	Protospacer
   .. *.*   *********.**** *********

24. spacer 2.58|2365712|35|NC_011830|CRISPRCasFinder,CRT matches to NC_011759 (Yersinia pseudotuberculosis pGDT4 plasmid) position: , mismatch: 10, identity: 0.714

acaacatggtcatgtagcttttttacgcgacgttc-	CRISPR spacer
acaacgcggtcatgtagctttttta-gtactgcctc	Protospacer
*****..****************** *.. .*...

25. spacer 3.5|4165822|36|NC_011830|CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.722

aaacaccaggctggccgaactggcggcgctcatatg	CRISPR spacer
ggtttccaggctggccgaaccggcggcgctgatgcc	Protospacer
.. . ***************.********* **..

26. spacer 3.12|4165823|37|NC_011830|PILER-CR matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.73

caaacaccaggctggccgaactggcggcgctcatatg	CRISPR spacer
cggtttccaggctggccgaaccggcggcgctgatgcc	Protospacer
*.. . ***************.********* **..

27. spacer 2.20|2363152|34|NC_011830|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

gaatacgcaaaggtgatttttgaatgcgagaagg	CRISPR spacer
atcgtcgcaaacgtgattttggaatgcgaatcga	Protospacer
.    ****** ******** ********.  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1497237 : 1558258

Clostridium_phage(36.11%)

protease,transposase,head,tail,tRNA,plate,integrase,terminase,portal,capsid

attL 1527024:1527038|attR 1544638:1544652

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005817350.1\|1497237_1497741_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005817349.1\|1497749_1498466_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_005817348.1\|1498462_1498909_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_015943403.1\|1498938_1499958_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.5e-73	48.3
WP_005817344.1\|1500490_1501417_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_005817342.1\|1501560_1502163_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_015943404.1\|1502191_1502674_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_015943405.1\|1502685_1504479_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_015943406.1\|1504496_1507178_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_005817332.1\|1507440_1508064_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_015943407.1\|1508463_1509435_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_018306447.1\|1509434_1509929_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_015943409.1\|1509972_1510407_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_015943410.1\|1510406_1510907_+	MogA/MoaB family molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_018306448.1\|1511032_1511857_+	NYN domain-containing protein	NA	NA	NA	NA
WP_005817319.1\|1512256_1512541_+	co-chaperone GroES	A0A221S386	uncultured_virus	3.7e-19	54.7
WP_015943412.1\|1512640_1514275_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.0e-161	56.4
WP_005817315.1\|1514419_1514761_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005817313.1\|1515478_1515739_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	1.1e-06	38.2
WP_015943413.1\|1515862_1516291_+	transcriptional regulator	NA	NA	NA	NA
WP_005817309.1\|1516491_1516653_+	hypothetical protein	NA	NA	NA	NA
WP_005817307.1\|1516673_1517141_+	hypothetical protein	A0A0K2CP81	Brevibacillus_phage	4.4e-25	43.7
WP_005817305.1\|1517133_1517313_+	hypothetical protein	NA	NA	NA	NA
WP_005817303.1\|1517315_1518632_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	1.9e-121	52.1
WP_005817302.1\|1518651_1519119_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	5.2e-50	60.6
WP_005817300.1\|1519271_1519685_+	hypothetical protein	A0A0A7RTN3	Clostridium_phage	5.8e-45	61.5
WP_011461488.1\|1519892_1521626_+	hypothetical protein	A0A0A7S091	Clostridium_phage	3.0e-74	34.5
WP_005817296.1\|1521655_1522327_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	4.5e-55	48.2
WP_005817294.1\|1522356_1523328_+	hypothetical protein	S5MNC9	Brevibacillus_phage	2.6e-96	51.4
WP_005817292.1\|1523358_1523718_+	DUF2577 domain-containing protein	A0A0A7RTW1	Clostridium_phage	1.8e-26	54.9
WP_005817290.1\|1523714_1524116_+	DUF2634 domain-containing protein	S6B9X2	Thermus_phage	2.0e-18	42.5
WP_011461486.1\|1524115_1525195_+\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	1.9e-95	50.9
WP_015943415.1\|1525187_1525775_+	DUF2313 domain-containing protein	A0A0K2CNM8	Brevibacillus_phage	7.5e-38	44.1
WP_005817286.1\|1525771_1526053_+	hypothetical protein	NA	NA	NA	NA
WP_015943416.1\|1526055_1527495_+	hypothetical protein	NA	NA	NA	NA
1527024:1527038	attL	NA	NA	NA	NA
WP_015943417.1\|1527789_1527936_+	hypothetical protein	NA	NA	NA	NA
WP_005817280.1\|1527989_1528889_+	hypothetical protein	S6B1J7	Thermus_phage	1.5e-45	41.2
WP_015943418.1\|1528905_1529178_+	hypothetical protein	A0A2H4J342	uncultured_Caudovirales_phage	1.2e-11	38.7
WP_005817277.1\|1529179_1529323_+	hypothetical protein	NA	NA	NA	NA
WP_015943419.1\|1529446_1529743_+	hypothetical protein	A0A0S2GM64	Bacillus_phage	1.5e-10	44.0
WP_015943420.1\|1530291_1530654_+	hypothetical protein	NA	NA	NA	NA
WP_015943421.1\|1531196_1531400_+	hypothetical protein	NA	NA	NA	NA
WP_015943422.1\|1531778_1532318_+	DUF3231 family protein	NA	NA	NA	NA
WP_015943424.1\|1533117_1533783_+	hypothetical protein	NA	NA	NA	NA
WP_005817255.1\|1534003_1534549_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.3e-12	28.4
WP_015943425.1\|1534660_1536193_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	9.1e-19	28.9
WP_015943426.1\|1536345_1537299_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	8.5e-07	28.7
WP_015943427.1\|1537438_1538119_+	hypothetical protein	NA	NA	NA	NA
WP_015943428.1\|1538399_1538759_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015943429.1\|1538761_1539073_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015943430.1\|1539050_1539488_+	hypothetical protein	NA	NA	NA	NA
WP_158304529.1\|1539632_1539782_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085930657.1\|1540010_1541191_-\|transposase	IS3-like element ISDha7 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-45	40.0
WP_015943432.1\|1541272_1541461_+	hypothetical protein	NA	NA	NA	NA
WP_015943433.1\|1541465_1541624_+	hypothetical protein	NA	NA	NA	NA
WP_076611670.1\|1542128_1543778_+\|transposase	IS1634-like element ISDha9 family transposase	NA	NA	NA	NA
WP_015943435.1\|1543713_1544904_-	hypothetical protein	NA	NA	NA	NA
1544638:1544652	attR	NA	NA	NA	NA
WP_015943436.1\|1545233_1545635_-	type II toxin-antitoxin system HicB family antitoxin	A0A1L2JY34	Aeribacillus_phage	7.8e-47	65.4
WP_015943437.1\|1545679_1545877_-	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	1.6e-16	59.7
WP_015943438.1\|1545979_1546255_+	hypothetical protein	NA	NA	NA	NA
WP_015943439.1\|1546257_1546728_+	hypothetical protein	A0A0A7RUV1	Clostridium_phage	3.1e-18	38.6
WP_015943440.1\|1546857_1547355_+\|terminase	phage terminase small subunit P27 family	A0A2H4J8E3	uncultured_Caudovirales_phage	3.4e-31	46.9
WP_015943441.1\|1547354_1549073_+\|terminase	terminase large subunit	Q8SBQ2	Clostridium_phage	4.3e-142	47.1
WP_193345597.1\|1549329_1550520_+\|portal	phage portal protein	A0A0A7RTS2	Clostridium_phage	2.5e-101	45.1
WP_015943444.1\|1550509_1551103_+\|head,protease	HK97 family phage prohead protease	Q9ZXF7	Bacillus_phage	4.9e-45	50.0
WP_015943445.1\|1551167_1552277_+\|capsid	phage major capsid protein	Q8SBP8	Clostridium_phage	3.6e-57	44.6
WP_015943446.1\|1552349_1552640_+\|head,tail	phage gp6-like head-tail connector protein	A6M953	Geobacillus_virus	5.9e-20	46.8
WP_015943447.1\|1552636_1552966_+\|head	phage head closure protein	A0A0A7RUH8	Clostridium_phage	1.1e-11	39.3
WP_015943448.1\|1552966_1553323_+	HK97 gp10 family phage protein	A0A0A7RUF1	Clostridium_phage	3.8e-21	49.1
WP_015943449.1\|1553333_1553693_+	hypothetical protein	A0A0A7S158	Clostridium_phage	1.5e-28	56.1
WP_015943450.1\|1553714_1554311_+\|tail	phage major tail protein, phi13 family	A0A0A7RUI3	Clostridium_phage	7.8e-43	46.8
WP_041272053.1\|1554395_1554746_+	hypothetical protein	NA	NA	NA	NA
WP_193345590.1\|1554817_1554961_+	hypothetical protein	NA	NA	NA	NA
WP_015943452.1\|1554979_1558258_+\|tail	phage tail tape measure protein	A0A1Q1PW35	Staphylococcus_phage	2.6e-79	54.9

DBSCAN-SWA_2

1563828 : 1575217

Synechococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015943456.1\|1563828_1567683_+	phosphoribosylformylglycinamidine synthase subunit PurQ	A6N228	Microbacterium_phage	2.0e-38	25.5
WP_005817242.1\|1567733_1568228_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.0e-24	43.4
WP_015943457.1\|1568381_1569677_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.1e-22	30.7
WP_015943458.1\|1569794_1570511_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SPE1	Cyanophage	9.7e-40	40.9
WP_011461475.1\|1570529_1571948_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-62	35.6
WP_011461474.1\|1571989_1573009_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FZ01	Synechococcus_phage	4.6e-75	46.5
WP_041271927.1\|1573008_1573608_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.8e-30	42.5
WP_005817232.1\|1573660_1575217_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-79	53.5

DBSCAN-SWA_3

3012086 : 3026318

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015944235.1\|3012086_3013226_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-26	33.9
WP_015944236.1\|3013846_3014365_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_015944237.1\|3014333_3015053_+	DUF4367 domain-containing protein	NA	NA	NA	NA
WP_015944238.1\|3015219_3015777_+	GNAT family N-acetyltransferase	A0A0N9SKF6	Staphylococcus_phage	1.4e-09	25.1
WP_080518278.1\|3016056_3017175_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-49	36.5
WP_015944240.1\|3017230_3017875_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.9e-39	41.8
WP_015944241.1\|3017902_3019111_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-114	51.9
WP_005811752.1\|3019177_3019642_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.1e-39	53.6
WP_005811754.1\|3019780_3020401_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015944242.1\|3020484_3020748_-	hypothetical protein	NA	NA	NA	NA
WP_015944243.1\|3020836_3023431_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.0e-118	36.6
WP_015944244.1\|3023624_3025352_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.1e-141	46.0
WP_015944245.1\|3025436_3026318_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.1e-13	39.4

DBSCAN-SWA_4

5133171 : 5148613

Clostridium_phage(35.71%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015945476.1\|5133171_5133570_+\|tail	phage tail tube protein	A0A1V0DZX1	Clostridioides_phage	5.2e-27	43.8
WP_015945477.1\|5133569_5133938_+	hypothetical protein	NA	NA	NA	NA
WP_015945478.1\|5134135_5136220_+	tape measure protein	NA	NA	NA	NA
WP_041272030.1\|5136416_5137055_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RTT3	Clostridium_phage	5.5e-10	25.2
WP_015945480.1\|5137064_5138072_+	hypothetical protein	A0A0K2SUC1	Clostridium_phage	3.7e-37	36.3
WP_015945481.1\|5138126_5138507_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_015945482.1\|5138503_5138920_+	DUF2634 domain-containing protein	J9QE34	Clostridium_phage	2.5e-27	46.3
WP_015945483.1\|5138912_5139953_+\|plate	baseplate J/gp47 family protein	A0A0A8WFP3	Clostridium_phage	6.1e-51	36.5
WP_015945484.1\|5139952_5140498_+	YmfQ family protein	A0A0A7RUW8	Clostridium_phage	9.7e-32	48.3
WP_015945485.1\|5140497_5140899_+	hypothetical protein	NA	NA	NA	NA
WP_015945486.1\|5140922_5141681_+	hypothetical protein	A0A2I5ARA7	Synechococcus_phage	8.5e-18	56.0
WP_041272152.1\|5141756_5142647_+	hypothetical protein	S6B1J7	Thermus_phage	1.3e-46	41.9
WP_015943418.1\|5142663_5142936_+	hypothetical protein	A0A2H4J342	uncultured_Caudovirales_phage	1.2e-11	38.7
WP_005817277.1\|5142937_5143081_+	hypothetical protein	NA	NA	NA	NA
WP_015945488.1\|5143181_5143478_+	hypothetical protein	A0A0S2GM64	Bacillus_phage	1.9e-10	35.2
WP_015945489.1\|5143480_5144191_+	N-acetylmuramoyl-L-alanine amidase	R9TQ04	Paenibacillus_phage	1.9e-27	40.4
WP_015945490.1\|5144204_5144567_+	hypothetical protein	NA	NA	NA	NA
WP_187374459.1\|5144648_5145794_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	8.0e-20	26.8
WP_005815410.1\|5146253_5146721_-	dCMP deaminase family protein	G3MA58	Bacillus_virus	9.5e-28	42.7
WP_005815407.1\|5146717_5147347_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_015945493.1\|5147359_5148613_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.6e-101	56.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011830

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection