CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_011082	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_3, complete sequence	0 crisprs	NA	0	0
NC_011083	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, complete sequence	3 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	40	12
NC_011081	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_91, complete sequence	0 crisprs	DEDDh	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011083_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011083_1

2860095-2860204

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011083_1

>merge|NC_011083|1|2860095-2860204|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>NC_011083|1|1|2860095-2860204|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011083.1\|WP_000196159.1\|2848723_2850904_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NC_011083.1\|WP_001237690.1\|2835778_2847253_+\|biofilm-associated-protein-BapA	unknown	unknown	gnl\|CDD\|375438
NC_011083.1\|WP_000701821.1\|2857756_2857972_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NC_011083.1\|WP_010989064.1\|2861907_2862726_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NC_011083.1\|WP_001520307.1\|2858007_2860077_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NC_011083.1\|WP_000749979.1\|2863329_2863614_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NC_011083.1\|WP_000480483.1\|2863726_2864248_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NC_011083.1\|WP_000533858.1\|2847317_2848727_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NC_011083.1\|WP_001520831.1\|2860579_2861863_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NC_011083.1\|WP_001098984.1\|2864615_2865596_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NC_011083.1\|WP_010989063.1\|2853967_2854561_+\|hypothetical-protein	unknown	unknown	unknown
NC_011083.1\|WP_000776032.1\|2868190_2868826_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NC_011083.1\|WP_000248794.1\|2854950_2856144_+\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|376935
NC_011083.1\|WP_000889012.1\|2866914_2868117_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NC_011083.1\|WP_001161781.1\|2856478_2857306_-\|hypothetical-protein	unknown	unknown	unknown
NC_011083.1\|WP_001518569.1\|2834680_2835163_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_011083.1\|WP_010989065.1\|2862878_2863235_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_011083.1\|WP_001033832.1\|2865606_2866620_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_011083.1\|WP_000973738.1\|2864244_2864619_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NC_011083.1\|WP_010989057.1\|2850911_2852075_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NC_011083.1\|WP_000196159.1\|2848723_2850904_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NC_011083.1\|WP_001237690.1\|2835778_2847253_+\|biofilm-associated-protein-BapA	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.24458e-22
NC_011083.1\|WP_000701821.1\|2857756_2857972_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NC_011083.1\|WP_010989064.1\|2861907_2862726_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NC_011083.1\|WP_001520307.1\|2858007_2860077_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NC_011083.1\|WP_000480483.1\|2863726_2864248_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NC_011083.1\|WP_000533858.1\|2847317_2848727_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	5.87074e-128
NC_011083.1\|WP_001520831.1\|2860579_2861863_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0
NC_011083.1\|WP_001098984.1\|2864615_2865596_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NC_011083.1\|WP_000776032.1\|2868190_2868826_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NC_011083.1\|WP_000248794.1\|2854950_2856144_+\|SEC-C-domain-containing-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
NC_011083.1\|WP_000889012.1\|2866914_2868117_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NC_011083.1\|WP_000749979.1\|2863329_2863614_+\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NC_011083.1\|WP_001518569.1\|2834680_2835163_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.11352e-88
NC_011083.1\|WP_010989065.1\|2862878_2863235_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NC_011083.1\|WP_001033832.1\|2865606_2866620_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NC_011083.1\|WP_000973738.1\|2864244_2864619_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NC_011083.1\|WP_010989057.1\|2850911_2852075_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.18004e-97

>NC_011083.1|WP_001520307.1|2858007_2860077_+|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NC_011083.1|WP_000701821.1|2857756_2857972_+|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NC_011083.1|WP_001161781.1|2856478_2857306_-|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NC_011083.1|WP_000248794.1|2854950_2856144_+|SEC-C-domain-containing-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NC_011083.1|WP_010989063.1|2853967_2854561_+|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NC_011083.1|WP_010989057.1|2850911_2852075_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER
>NC_011083.1|WP_000196159.1|2848723_2850904_+|type-I-secretion-system-permease/ATPase
MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA
>NC_011083.1|WP_000533858.1|2847317_2848727_+|TolC-family-outer-membrane-protein
MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLDGSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVSAGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVLAAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGALRQAFALNHRSIQSVEIQP
>NC_011083.1|WP_001237690.1|2835778_2847253_+|biofilm-associated-protein-BapA
MRLLAVVSKLTGVSTTVESSAVTLNAPSIVKLSVAREEISQLTRINQDLVVTLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIADINELLVTSGASHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDGDNPPPDNTNPDGNPPDNSNPGGSNPNGNTPGSSNPVDTTPPLAPGKLLISADGKTVSGEAEAGSTITIKDPSGNVVGEGKADSDGKFSIDLTAPQLSGEQLTVTATDDAGNTGPSATIDAPNIPLLDTPAITAAIDDAAPLTGTLSNNQFTNDNTPTLEGTGSAGTVIHIYANGQEIGSTTVDSSGSWRFAITSALADGENHFTAIATNVKGESSESARFTLTIDTLSPDAPRVELIADNTGLLTGPLQNNDRTDEAKPLFSGQGEAGNTITIKEGSTVIGSATVDENGRWTFTPTTPLSDGEHTFTVEQSDKAGNTSRVTTTPTIIVDTTPPDAAIIDNVAKDGTTVSGTAEAGSTVSIYDPAGNYLGSTITGENNHFSITLNPAQTHGERLEARIQDAVGNIGPATEFTASDSQYPAQPTILTVTDDAGAVTGLLKNGDATDDNRPTLSGTAEPGSTISINDNGFPVPTFPPIVADADGKWSFTPSLALADGDHVFTATATNDRGTSGQSVSFTIDIDTQPPVLEGLAVSDVGDRLTGTTEAGSTVVIKDSQGNTLGSGTAGDDGTFSIGISPAKINGETLSISVTDKAANSGPVETLNAPDKTAPAAPDGLIVATDGLSVSGQAEAGATVTIRDSSNTVLGSAVANGNGQFIVPLNTAQTNGQALIATATDVAKNESAAATVIAPDSTAPEMPKNVVISEDGTSISGTAEPGSAITIATPDGKPLGSGKADGEGHFTLPLVPAQTNGEQVTVTATDSANNVSPPTTAQAPDITAPDKPIITQVLDDVESFTGPLVNGQTTNDNRPTLSGTAEAGARVEVFDNGVSLGLATLQPNGGWTFTPSQNLGEGAHRLTVIATDAKGNASPAASFDLVVDTQSPQQPVITFITDDAPGILGSVAHLGLTNDSTPTINGTGEPGSTVHLYQNGARIADIIVGNSGVWSYAYTTASPLADDTYTFTVTASDSNGNTTPFSTDFTITIDTQAPAAPGVIGVADGDGNTIDTNQITQESQPRLSGSGTAGDTIILYDNGNAIGQALVGTDGRWQFTPPAALGDGDHLLTARANDPAGNESPESISFTLRIDTQAPDAPQIVSAAITGGEGEVLLANGSITNQRMPTLSGTGEPGTIITLYNNGVELATVQVNPQGSWTYPLTRNLSEGLNILTATATDAAGNSSPTSGVFSVTLDTQPPAQPDAPLISDNVAPVIGNIGNNGATNDTTPTFSGTGEIGSTIILYNNGSEIGRTTVGDNGSWSFTPAALTPETYTITVTETDIAGNISPPSASVTFTLDTTAPANPVITFAEDNVGEVQDTIVSGATTDDNTPVIHGTGDIGSVITLYNGSSVVGVVTVDETGTWTLPVTSALPDGVYTLTAIAADAAGNSSDVSNSFTFTVDTVPLQPPVVNEILDDVAPVTGPLTDGAFTNDRTLTINGSGENGSTVTIYDNGVAIGTALVTDGTWTFNTPELSEVSHALTFSATDDAGNTTAQTQPITITVDITAPPAPTIQTVDDDGTRVAGLADPYATVEIHHADGTLVGSAIANGTGEFVVTLSPAQTDGGTLTAIAIDRAGNNGPATNFPASDSGLPAVPAITAIEDDVGSVQGNIAAGGATDDTTPTLRGTTDIGSTVEVFIDGDSAGFATVDASGNWIFEIATPLSESTHYFTVQATNANGPGGLSAPVGITVDLSVPAQPVITSATDDVPGMTGTLDNGALTNDSRPTLNGTGEAGATIRILDNGVEIGSATVDQSGNWRFTPNAPLENIAHIFTAVATDPAGNSGQPSDGFTLNIDAQAPDVPVITSVIDDNNQPTVPVLPGQSTDDRQPILNGTGEPGATITIFDNGTPLGTAQVGENGSWTFPVPRNLSEGSHNLTVSATDPAGNTSAVSAPWTIVVDITPPAIPVLTSVVDDQPGITGNLVSGQLTNDATPTLNGRGEAGATINVYLDGNPASIGTTTVNSDGTWSFTPQTPLANGSHTFTLSATDPAGNSSAVSSGFVLTIDATPPAAPVIASVADNTAPVTGIVPNGGSTNETRPTLSGTGEAGTTISIYNGSALVGTAQVQANGSWSFTPSTSLGAGVWNLTATATDAAGNTSAASEIRSFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQITDEARPVISGTRETNTTIRLYDNGTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPVSDSVNFVVDTTPPLTPVITSVSDDQAPGLGTIANGQNTNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDGAWSVSTSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANGQITNDNRPTLNGTAEAGSVVSIYDGDTLLGVTSANASGAWSFTPTTGLNDGTRTLTVTATDPAGNVSPATSGFTIVVDTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTAEANSAVSIFDNGALVATVNANASGNWSWTPTAALGQGSHAYSVSAADAAGNVSAASPSITIIVDTIAPGAPGNLVINATGNRVTGTAEAGSTVTITSETGVVLGTATADGTGSFTATLTPAQTNGQPLLAFAQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQVTNDAQPTLNGTAQAGATVSIYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFTATATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGLAEANSTVTVTLTGGVTLTTTAGSNGAWSLTLPTKQIEGQLINVTATDAAGNASGTLGITAPVLPLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGNDTAQVEFTIAEGGTGDVTIDAAATGIVLSLLSTQEIVVQRYDTSLGAWTTIVNTAVGDFANLLTLTGSGVTLNLSGLGEGQYRVLTYNTSLLATGSYTSLDVDVHQTSAGIISGPTISTGNVMADDTAPTGTTVTAITNANGVSTPVGAGGVDILGQYGTLHINQDGSYTYTLTKPTAGYGHKESFTYTITQNGVGSSAAQLVINLGPAPVPGSVIATDNNASLVFDTHVSYVNNGPSTQSGVTVLSVGLGNVLNANLLDDMTNPIIFNVEEGATRTMTLQGTVGGVSLVSTFDLYVYRFNDAIQQYEQFRVQKGWINTLLLAGQSQPLTLTLPGGEYLFVLNTASGISVLTGYTLAISQDHTYAVDSITANTTGNVLTNDVVPTDALLTEVNGVAIAATGTTEVNGLYGSLIIDARGNYTYTLKNGVGADSIKTPDSFIYTVKAPNGDTDTASLNITPTARALDAINDVSDTLSVATLQDTAAWLDSSVGSASWGLLGKSGSGSGTFDVATGTVLKGASLVFDVSTLITLGNLNISWAIQENGTVIRNGTVPVANITLGSATVTVNLSGLELDAGTYTLNFTGTNTLAGAATITPRVIGTTVDLDNFETSGTHTVLGNIFDGSDAAGAMDQLNTVNTRLSISGYNGSAATLDAAANTTSATIQGHYGTLQINLDGAYTYTLNNGVAMSSITSKEVFTYQLDDKMGHTDSATLTIDMAPQIVSTNQNDVLIGSAYGDTLIYHLLNGADATGGNGVDRWQNFSTAQGDKIDIHELLTGWDHQAATLGNFVQVHTSGANTVISVDRDGTGSAFKSTDLVTLENVQLTLNDLLQNNHLITGG
>NC_011083.1|WP_001518569.1|2834680_2835163_+|SsrA-binding-protein-SmpB
MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR
>NC_011083.1|WP_001520831.1|2860579_2861863_+|AAA-family-ATPase
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>NC_011083.1|WP_010989064.1|2861907_2862726_+|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NC_011083.1|WP_010989065.1|2862878_2863235_-|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NC_011083.1|WP_000749979.1|2863329_2863614_+|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NC_011083.1|WP_000480483.1|2863726_2864248_+|PTS-glucitol/sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NC_011083.1|WP_000973738.1|2864244_2864619_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NC_011083.1|WP_001098984.1|2864615_2865596_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NC_011083.1|WP_001033832.1|2865606_2866620_+|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NC_011083.1|WP_000889012.1|2866914_2868117_+|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NC_011083.1|WP_000776032.1|2868190_2868826_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH

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Crispr_ID: NC_011083_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011083_2

3051217-3052879

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011083_2

>merge|NC_011083|2|3051217-3052879|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTACTGCTTAGTTAATTAATGGGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACACCGTTCCGGTATGATCGAAGATACGGCAAACCGGTTTATCCCCGCTGGCGCGGAGAACACGGCAGCGGGCGAGGCAAACACATTCGGGGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAATTTCTCATCTAACAGCCTGTACGCCTCAGGTTTATCCCCGCTGGCGCGGGGAACACGAATCTAATGCAACAGATGAATAAACACGTAACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCGTCAATGCGAAATTTTCCGCGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCATTCACCAACAACAATATCGCCCTGCAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGATGAAATCGTCAATAAAATTATTGGCGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACACCACCGGAGCCATCGCCCAACACAGAGCCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGCAAACCCGCAAGGCCCGTATATGGATTTAACGGTTTATCCCCGCTGGCGCGGGGAACACAACCAATCCAGGCGATAAGAGGCGATTAAAGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACATTTTATTTGACAAATTGGCGGCATCTCACTGCGGTTTATCCCCGCTGGCGCGGGGAACACCACCACACATAATGATTACTCCACTACCCAGCCGGTTTATCCCCGCTGGCGCGGGGAACACACTGCTTATCATTGATTTTATTGATTTTTCCCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011083|2|2|3051217-3051673|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGAGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGAAATCGTCAATAAAATTATTGGCGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACCGGAGCCATCGCCCAACACAGAGCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAACCCGCAAGGCCCGTATATGGATTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCAATCCAGGCGATAAGAGGCGATTAAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC


>NC_011083|2|1|3051217-3051672|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGAGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGAAATCGTCAATAAAATTATTGGCGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACCGGAGCCATCGCCCAACACAGAGCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAACCCGCAAGGCCCGTATATGGATTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCAATCCAGGCGATAAGAGGCGATTAAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC


>NC_011083|2|1|3051278-3052879|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACACCGTTCCGGTATGA	TCGAAGATACGGCAAACCGGTTTATCCCCGCT
GGCGCGGAGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACCGTTGCGTCAGGTTG	ATCCAGTGCGTCAGCGGCGGTTTATCCCCGCT
GGCGCGGGGAACACTGATGAAATCGTCAA	TAAAATTATTGGCGCGCCGGTTTATCCCCGCT
GGCGCGGGGAACACACCACCGGAGCCATC	GCCCAACACAGAGCCGCCGGTTTATCCCCGCT
GGCGCGGGGAACACGGCAAACCCGCAAGG	CCCGTATATGGATTTAACGGTTTATCCCCGCT
GGCGCGGGGAACACAACCAATCCAGGCGA	TAAGAGGCGATTAAAGGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCTCGGTCTCGGTCT	CGGTCTCGGTCTCGGTAGTGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACATTTTATTTGACAAA	TTGGCGGCATCTCACTGCGGTTTATCCCCGCT
GGCGCGGGGAACACCACCACACATAATGA	TTACTCCACTACCCAGCCGGTTTATCCCCGCT
GGCGCGGGGAACACACTGCTTATCATTGA	TTTTATTGATTTTTCCCCGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NC_011083|2|2|3051686-3052879|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGAGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGAAATCGTCAATAAAATTATTGGCGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACCGGAGCCATCGCCCAACACAGAGCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAACCCGCAAGGCCCGTATATGGATTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCAATCCAGGCGATAAGAGGCGATTAAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011083|2|3|3051747-3052879|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGAGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGAAATCGTCAATAAAATTATTGGCGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACCGGAGCCATCGCCCAACACAGAGCCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAAACCCGCAAGGCCCGTATATGGATTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCAATCCAGGCGATAAGAGGCGATTAAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011083.1\|WP_000490481.1\|3050155_3051202_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011083.1\|WP_000144832.1\|3053268_3054189_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011083.1\|WP_000281486.1\|3054185_3054836_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_011083.1\|WP_001092252.1\|3047547_3048987_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011083.1\|WP_000085106.1\|3054817_3055564_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011083.1\|WP_001145540.1\|3061878_3062832_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011083.1\|WP_001221537.1\|3043083_3043845_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011083.1\|WP_000368582.1\|3057203_3058760_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011083.1\|WP_000741653.1\|3045350_3046061_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_011083.1\|WP_000206416.1\|3055574_3056633_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011083.1\|WP_000134246.1\|3043825_3044875_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011083.1\|WP_001683461.1\|3046581_3046905_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_011083.1\|WP_000372384.1\|3048996_3049905_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011083.1\|WP_001518648.1\|3052975_3053269_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011083.1\|WP_000080390.1\|3063044_3063779_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011083.1\|WP_001173663.1\|3046955_3047561_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011083.1\|WP_000517480.1\|3046079_3046391_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011083.1\|WP_000117946.1\|3056646_3057207_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_011083.1\|WP_001219244.1\|3044871_3045351_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011083.1\|WP_000029746.1\|3058771_3061435_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_011083.1\|WP_000490481.1\|3050155_3051202_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011083.1\|WP_000144832.1\|3053268_3054189_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NC_011083.1\|WP_000281486.1\|3054185_3054836_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NC_011083.1\|WP_001092252.1\|3047547_3048987_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011083.1\|WP_000085106.1\|3054817_3055564_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.86085e-49
NC_011083.1\|WP_001145540.1\|3061878_3062832_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011083.1\|WP_001221537.1\|3043083_3043845_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NC_011083.1\|WP_000368582.1\|3057203_3058760_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011083.1\|WP_000741653.1\|3045350_3046061_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NC_011083.1\|WP_000206416.1\|3055574_3056633_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
NC_011083.1\|WP_000134246.1\|3043825_3044875_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011083.1\|WP_001683461.1\|3046581_3046905_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	5.46686e-48
NC_011083.1\|WP_000372384.1\|3048996_3049905_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011083.1\|WP_001518648.1\|3052975_3053269_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NC_011083.1\|WP_000080390.1\|3063044_3063779_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83466e-139
NC_011083.1\|WP_001173663.1\|3046955_3047561_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_011083.1\|WP_000517480.1\|3046079_3046391_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_011083.1\|WP_000117946.1\|3056646_3057207_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_011083.1\|WP_001219244.1\|3044871_3045351_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NC_011083.1\|WP_000029746.1\|3058771_3061435_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>NC_011083.1|WP_000490481.1|3050155_3051202_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_011083.1|WP_000372384.1|3048996_3049905_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_011083.1|WP_001092252.1|3047547_3048987_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_011083.1|WP_001173663.1|3046955_3047561_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_011083.1|WP_001683461.1|3046581_3046905_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATCAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_011083.1|WP_000517480.1|3046079_3046391_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_011083.1|WP_000741653.1|3045350_3046061_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_011083.1|WP_001219244.1|3044871_3045351_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_011083.1|WP_000134246.1|3043825_3044875_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_011083.1|WP_001221537.1|3043083_3043845_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_011083.1|WP_001518648.1|3052975_3053269_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_011083.1|WP_000144832.1|3053268_3054189_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_011083.1|WP_000281486.1|3054185_3054836_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NC_011083.1|WP_000085106.1|3054817_3055564_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCSSGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_011083.1|WP_000206416.1|3055574_3056633_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NC_011083.1|WP_000117946.1|3056646_3057207_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_011083.1|WP_000368582.1|3057203_3058760_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_011083.1|WP_000029746.1|3058771_3061435_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_011083.1|WP_001145540.1|3061878_3062832_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NC_011083.1|WP_000080390.1|3063044_3063779_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_011083_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011083_3

3069137-3070264

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACT	PILER-CR

18 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NC_011083_3

>merge|NC_011083|3|3069137-3070264|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGGTCCCCGGCCTCAATACCGCGCTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACA

>NC_011083|3|4|3069137-3070263|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011083|3|3|3069137-3070263|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011083|3|2|3069198-3070019|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGA	CGTGGACGAGGAGTTACTCAACCGCTGCCGG
TTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAA	GTCAAACGGTTCTGGAACGG


>NC_011083|3|3|3070105-3070264|PILER-CR
	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGA	CGTGGACGAGGAGTTACTCAACCGCTGCCGG
TTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAA	GTCAAACGGTTCTGGAACGG
TTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011083.1\|WP_000210911.1\|3065566_3067366_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_011083.1\|WP_000842512.1\|3076017_3076605_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NC_011083.1\|WP_000036734.1\|3071366_3072665_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011083.1\|WP_001208011.1\|3068241_3069039_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_011083.1\|WP_001145540.1\|3061878_3062832_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011083.1\|WP_000210863.1\|3072747_3074385_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_011083.1\|WP_001079648.1\|3081177_3081714_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_011083.1\|WP_000832395.1\|3080710_3081181_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_011083.1\|WP_001044459.1\|3079396_3080170_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NC_011083.1\|WP_000108313.1\|3067789_3068152_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_011083.1\|WP_000206416.1\|3055574_3056633_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011083.1\|WP_000981789.1\|3076684_3079384_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NC_011083.1\|WP_000178265.1\|3080189_3080696_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_011083.1\|WP_001199961.1\|3070559_3071231_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011083.1\|WP_000210451.1\|3074612_3075413_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011083.1\|WP_000080390.1\|3063044_3063779_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011083.1\|WP_001290663.1\|3063854_3065567_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011083.1\|WP_000117946.1\|3056646_3057207_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_011083.1\|WP_000368582.1\|3057203_3058760_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011083.1\|WP_000029746.1\|3058771_3061435_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_011083.1\|WP_000210911.1\|3065566_3067366_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_011083.1\|WP_000842512.1\|3076017_3076605_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NC_011083.1\|WP_000036734.1\|3071366_3072665_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011083.1\|WP_001208011.1\|3068241_3069039_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.12831e-101
NC_011083.1\|WP_001145540.1\|3061878_3062832_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011083.1\|WP_000210863.1\|3072747_3074385_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011083.1\|WP_001079648.1\|3081177_3081714_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.25472e-123
NC_011083.1\|WP_000832395.1\|3080710_3081181_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.31755e-98
NC_011083.1\|WP_001044459.1\|3079396_3080170_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NC_011083.1\|WP_000108313.1\|3067789_3068152_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_011083.1\|WP_000206416.1\|3055574_3056633_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
NC_011083.1\|WP_000981789.1\|3076684_3079384_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NC_011083.1\|WP_000178265.1\|3080189_3080696_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	9.51628e-105
NC_011083.1\|WP_001199961.1\|3070559_3071231_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_011083.1\|WP_000210451.1\|3074612_3075413_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_011083.1\|WP_000080390.1\|3063044_3063779_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83466e-139
NC_011083.1\|WP_001290663.1\|3063854_3065567_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011083.1\|WP_000117946.1\|3056646_3057207_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_011083.1\|WP_000368582.1\|3057203_3058760_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011083.1\|WP_000029746.1\|3058771_3061435_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>NC_011083.1|WP_001208011.1|3068241_3069039_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_011083.1|WP_000108313.1|3067789_3068152_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_011083.1|WP_000210911.1|3065566_3067366_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAVEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_011083.1|WP_001290663.1|3063854_3065567_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_011083.1|WP_000080390.1|3063044_3063779_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011083.1|WP_001145540.1|3061878_3062832_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NC_011083.1|WP_000029746.1|3058771_3061435_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_011083.1|WP_000368582.1|3057203_3058760_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_011083.1|WP_000117946.1|3056646_3057207_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_011083.1|WP_000206416.1|3055574_3056633_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NC_011083.1|WP_001199961.1|3070559_3071231_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011083.1|WP_000036734.1|3071366_3072665_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011083.1|WP_000210863.1|3072747_3074385_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_011083.1|WP_000210451.1|3074612_3075413_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_011083.1|WP_000842512.1|3076017_3076605_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_011083.1|WP_000981789.1|3076684_3079384_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGNQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NC_011083.1|WP_001044459.1|3079396_3080170_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_011083.1|WP_000178265.1|3080189_3080696_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPSTQLAGGDFNASATLVVDYQ
>NC_011083.1|WP_000832395.1|3080710_3081181_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_011083.1|WP_001079648.1|3081177_3081714_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETVAQQRLDINAVQGTAFMLKEGITTINLQARLQKYAGEDVMPGEFKGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011083_2	2.8\|3051673\|28\|NC_011083\|PILER-CR	3051673-3051700	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NC_011083_2	2.7\|3051612\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051612-3051643	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NC_011083_2	2.7\|3051612\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051612-3051643	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NC_011083_2	2.7\|3051612\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051612-3051643	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NC_011083_2	2.14\|3052035\|32\|NC_011083\|PILER-CR	3052035-3052066	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NC_011083_2	2.16\|3052157\|32\|NC_011083\|PILER-CR	3052157-3052188	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NC_011083_2	2.16\|3052157\|32\|NC_011083\|PILER-CR	3052157-3052188	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP031397	Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence	50725-50756	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP019854	Borreliella burgdorferi plasmid lp54, complete sequence	50437-50468	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP019765	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence	50437-50468	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NC_011784	Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence	50424-50455	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP017218	Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence	3204-3235	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NC_013130	Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence	50571-50602	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NC_013129	Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence	49716-49747	7	0.781
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NC_001857	Borreliella burgdorferi B31 plasmid lp54, complete sequence	50444-50475	7	0.781
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	MH509446	Gordonia phage DelRio, complete genome	6223-6260	7	0.816
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	325874-325911	7	0.816
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-285	7	0.816
NC_011083_2	2.25\|3052712\|32\|NC_011083\|PILER-CR	3052712-3052743	32	DQ838728	Lactococcus phage P335, complete genome	1117-1148	7	0.781
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NC_011083_2	2.33\|3052020\|32\|NC_011083\|CRT,CRISPRCasFinder	3052020-3052051	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NC_011083_2	2.35\|3052142\|32\|NC_011083\|CRT,CRISPRCasFinder	3052142-3052173	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NC_011083_2	2.35\|3052142\|32\|NC_011083\|CRT,CRISPRCasFinder	3052142-3052173	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP031397	Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence	50725-50756	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP019854	Borreliella burgdorferi plasmid lp54, complete sequence	50437-50468	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP019765	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence	50437-50468	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NC_011784	Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence	50424-50455	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP017218	Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence	3204-3235	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NC_013130	Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence	50571-50602	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NC_013129	Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence	49716-49747	7	0.781
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NC_001857	Borreliella burgdorferi B31 plasmid lp54, complete sequence	50444-50475	7	0.781
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	MH509446	Gordonia phage DelRio, complete genome	6223-6260	7	0.816
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	325874-325911	7	0.816
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-285	7	0.816
NC_011083_2	2.44\|3052697\|32\|NC_011083\|CRT,CRISPRCasFinder	3052697-3052728	32	DQ838728	Lactococcus phage P335, complete genome	1117-1148	7	0.781
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	406309-406339	7	0.774
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1840543-1840573	7	0.774
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1220925-1220955	7	0.774
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	718851-718881	7	0.774
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	911450-911480	7	0.774
NC_011083_2	2.2\|3051307\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051307-3051338	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NC_011083_2	2.6\|3051551\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051551-3051582	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NC_011083_2	2.6\|3051551\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3051551-3051582	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NC_011083_2	2.15\|3052096\|32\|NC_011083\|PILER-CR	3052096-3052127	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NC_011083_2	2.19\|3052340\|32\|NC_011083\|PILER-CR	3052340-3052371	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NC_011083_2	2.19\|3052340\|32\|NC_011083\|PILER-CR	3052340-3052371	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336422	8	0.789
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619962	8	0.789
NC_011083_2	2.25\|3052712\|32\|NC_011083\|PILER-CR	3052712-3052743	32	NC_014754	Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence	76425-76456	8	0.75
NC_011083_2	2.34\|3052081\|32\|NC_011083\|CRT,CRISPRCasFinder	3052081-3052112	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NC_011083_2	2.38\|3052325\|32\|NC_011083\|CRT,CRISPRCasFinder	3052325-3052356	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NC_011083_2	2.38\|3052325\|32\|NC_011083\|CRT,CRISPRCasFinder	3052325-3052356	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336422	8	0.789
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619962	8	0.789
NC_011083_2	2.44\|3052697\|32\|NC_011083\|CRT,CRISPRCasFinder	3052697-3052728	32	NC_014754	Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence	76425-76456	8	0.75
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NC_011083_3	3.7\|3069532\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069532-3069563	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NC_011083_3	3.7\|3069532\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069532-3069563	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NC_011083_3	3.8\|3069593\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069593-3069624	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NC_011083_3	3.18\|3070203\|32\|NC_011083\|CRISPRCasFinder,CRT	3070203-3070234	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353299-353329	8	0.742
NC_011083_2	2.11\|3051852\|32\|NC_011083\|PILER-CR	3051852-3051883	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	24080-24111	9	0.719
NC_011083_2	2.25\|3052712\|32\|NC_011083\|PILER-CR	3052712-3052743	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	527800-527831	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP043846	Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence	16198-16229	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	10125-10156	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP034114	Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence	2991-3022	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	177881-177912	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	183537-183568	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP026804	Shigella flexneri strain 89-141 plasmid unnamed1	244387-244418	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	180101-180132	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	161475-161506	9	0.719
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	182902-182933	9	0.719
NC_011083_2	2.30\|3051837\|32\|NC_011083\|CRT,CRISPRCasFinder	3051837-3051868	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	24080-24111	9	0.719
NC_011083_2	2.44\|3052697\|32\|NC_011083\|CRT,CRISPRCasFinder	3052697-3052728	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	527800-527831	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP043846	Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence	16198-16229	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	10125-10156	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP034114	Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence	2991-3022	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	177881-177912	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	183537-183568	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP026804	Shigella flexneri strain 89-141 plasmid unnamed1	244387-244418	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	180101-180132	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	161475-161506	9	0.719
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	182902-182933	9	0.719
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NC_011083_3	3.5\|3069410\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069410-3069441	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NC_011083_3	3.10\|3069715\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069715-3069746	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NC_011083_3	3.14\|3069959\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069959-3069990	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NC_011083_3	3.14\|3069959\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069959-3069990	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NC_011083_3	3.17\|3070142\|32\|NC_011083\|CRISPRCasFinder,CRT	3070142-3070173	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NC_011083_3	3.17\|3070142\|32\|NC_011083\|CRISPRCasFinder,CRT	3070142-3070173	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NC_011083_3	3.17\|3070142\|32\|NC_011083\|CRISPRCasFinder,CRT	3070142-3070173	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	AM749121	Streptococcus phage M102 complete genome	7893-7923	9	0.71
NC_011083_3	3.19\|3070146\|31\|NC_011083\|PILER-CR	3070146-3070176	31	NC_012884	Streptococcus phage M102, complete genome	7893-7923	9	0.71
NC_011083_2	2.1\|3051246\|32\|NC_011083\|CRISPRCasFinder,CRT	3051246-3051277	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NC_011083_2	2.1\|3051246\|32\|NC_011083\|CRISPRCasFinder,CRT	3051246-3051277	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NC_011083_2	2.13\|3051974\|32\|NC_011083\|PILER-CR	3051974-3052005	32	NC_024995	Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119	5043-5074	10	0.688
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NC_011083_2	2.18\|3052279\|32\|NC_011083\|PILER-CR	3052279-3052310	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NC_011083_2	2.19\|3052340\|32\|NC_011083\|PILER-CR	3052340-3052371	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NC_011083_2	2.20\|3052401\|32\|NC_011083\|PILER-CR	3052401-3052432	32	NZ_CP012188	Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence	53401-53432	10	0.688
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45638-45675	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47029-47066	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71631-71668	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121349	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	MT077888	Escherichia coli plasmid p65, complete sequence	47123-47160	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46527-46564	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130794	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69614-69651	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195971-196008	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41259-41296	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45070-45107	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239704-239741	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45070-45107	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43320-43357	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47029-47066	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5920-5957	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240141-240178	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73222	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90229	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93481	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47435-47472	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181859	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164992	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46423-46460	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45075-45112	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41927	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98545	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47434-47471	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70913	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47990-48027	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60966	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106267	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61676	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125734	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45073-45110	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119613-119650	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136437-136474	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46422-46459	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182680	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46272-46309	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197020-197057	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166897	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46085-46122	10	0.737
NC_011083_2	2.24\|3052645\|38\|NC_011083\|PILER-CR	3052645-3052682	38	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46814-46851	10	0.737
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP044540	Borrelia sp. CA690 plasmid lp17, complete sequence	10481-10512	10	0.688
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	126578-126609	10	0.688
NC_011083_2	2.32\|3051959\|32\|NC_011083\|CRT,CRISPRCasFinder	3051959-3051990	32	NC_024995	Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119	5043-5074	10	0.688
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NC_011083_2	2.37\|3052264\|32\|NC_011083\|CRT,CRISPRCasFinder	3052264-3052295	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NC_011083_2	2.38\|3052325\|32\|NC_011083\|CRT,CRISPRCasFinder	3052325-3052356	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NC_011083_2	2.39\|3052386\|32\|NC_011083\|CRT,CRISPRCasFinder	3052386-3052417	32	NZ_CP012188	Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence	53401-53432	10	0.688
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45638-45675	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47029-47066	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71631-71668	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121349	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	MT077888	Escherichia coli plasmid p65, complete sequence	47123-47160	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46527-46564	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130794	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69614-69651	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195971-196008	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41259-41296	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45070-45107	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239704-239741	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45070-45107	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43320-43357	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47029-47066	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5920-5957	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240141-240178	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73222	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90229	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93481	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47435-47472	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181859	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164992	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46423-46460	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45075-45112	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41927	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98545	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47434-47471	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70913	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47990-48027	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60966	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106267	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61676	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125734	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45073-45110	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119613-119650	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136437-136474	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46422-46459	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182680	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46272-46309	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197020-197057	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166897	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46085-46122	10	0.737
NC_011083_2	2.43\|3052630\|38\|NC_011083\|CRT,CRISPRCasFinder	3052630-3052667	38	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46814-46851	10	0.737
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP044540	Borrelia sp. CA690 plasmid lp17, complete sequence	10481-10512	10	0.688
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	126578-126609	10	0.688
NC_011083_3	3.1\|3069166\|32\|NC_011083\|CRISPRCasFinder,CRT	3069166-3069197	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NC_011083_3	3.4\|3069349\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069349-3069380	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NC_011083_3	3.9\|3069654\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069654-3069685	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NC_011083_3	3.16\|3070081\|32\|NC_011083\|CRISPRCasFinder,CRT	3070081-3070112	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NC_011083_2	2.27\|3052834\|32\|NC_011083\|PILER-CR	3052834-3052865	32	NZ_CP041669	Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence	45678-45709	11	0.656
NC_011083_2	2.46\|3052819\|32\|NC_011083\|CRT,CRISPRCasFinder	3052819-3052850	32	NZ_CP041669	Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence	45678-45709	11	0.656
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NC_011083_3	3.13\|3069898\|32\|NC_011083\|CRISPRCasFinder,CRT,PILER-CR	3069898-3069929	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.8|3051673|28|NC_011083|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

2. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

3. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

4. spacer 2.7|3051612|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

5. spacer 2.7|3051612|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

6. spacer 2.7|3051612|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

7. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

8. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

9. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

10. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

11. spacer 2.14|3052035|32|NC_011083|PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

12. spacer 2.16|3052157|32|NC_011083|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

13. spacer 2.16|3052157|32|NC_011083|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

14. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

15. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

16. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

17. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

18. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

19. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

20. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

21. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

22. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtgccctcg	Protospacer
*******.************ **********. .  **

23. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tcgcggtctcggtctcggtctcggtcttgtcggcggcg	Protospacer
** ************************.* ..*.*.**

24. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcg-gtagtgacg	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgtgggggc-	Protospacer
 *********.***********.****** **.* *.*

25. spacer 2.25|3052712|32|NC_011083|PILER-CR matches to DQ838728 (Lactococcus phage P335, complete genome) position: , mismatch: 7, identity: 0.781

attttatttgacaaattggcggcatctcactg-	CRISPR spacer
ttgttatttcagaaattggcggcatc-cgctat	Protospacer
 * ****** * ************** *.**.

26. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

27. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

28. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

29. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

30. spacer 2.33|3052020|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

31. spacer 2.35|3052142|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

32. spacer 2.35|3052142|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

33. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

34. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

35. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

36. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

37. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

38. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

39. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

40. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.781

tgat-gaaatcgtcaataaaattattggcgcgc	CRISPR spacer
-gataaaaatcgtcgataacattattggcgaat	Protospacer
 *** .********.**** ********** ..

41. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtgccctcg	Protospacer
*******.************ **********. .  **

42. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tcgcggtctcggtctcggtctcggtcttgtcggcggcg	Protospacer
** ************************.* ..*.*.**

43. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 7, identity: 0.816

tctcggtctcggtctcggtctcggtctcg-gtagtgacg	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgtgggggc-	Protospacer
 *********.***********.****** **.* *.*

44. spacer 2.44|3052697|32|NC_011083|CRT,CRISPRCasFinder matches to DQ838728 (Lactococcus phage P335, complete genome) position: , mismatch: 7, identity: 0.781

attttatttgacaaattggcggcatctcactg-	CRISPR spacer
ttgttatttcagaaattggcggcatc-cgctat	Protospacer
 * ****** * ************** *.**.

45. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

46. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

47. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

48. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

49. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

50. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

51. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

52. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

53. spacer 2.2|3051307|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

54. spacer 2.6|3051551|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

55. spacer 2.6|3051551|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

56. spacer 2.15|3052096|32|NC_011083|PILER-CR matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

57. spacer 2.19|3052340|32|NC_011083|PILER-CR matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

58. spacer 2.19|3052340|32|NC_011083|PILER-CR matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

59. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.789

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcggtctcgacgacgctt	Protospacer
*****************************.....* .

60. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.789

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcctcggcg	Protospacer
.***********.*****.***********.  .*.**

61. spacer 2.25|3052712|32|NC_011083|PILER-CR matches to NC_014754 (Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence) position: , mismatch: 8, identity: 0.75

attttatttgacaaattggcggcatctcactg	CRISPR spacer
cctttttttgtcaaattggcggcatacggctg	Protospacer
 .*** **** ************** . .***

62. spacer 2.34|3052081|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

63. spacer 2.38|3052325|32|NC_011083|CRT,CRISPRCasFinder matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

64. spacer 2.38|3052325|32|NC_011083|CRT,CRISPRCasFinder matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

65. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.789

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcggtctcgacgacgctt	Protospacer
*****************************.....* .

66. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.789

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcctcggcg	Protospacer
.***********.*****.***********.  .*.**

67. spacer 2.44|3052697|32|NC_011083|CRT,CRISPRCasFinder matches to NC_014754 (Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence) position: , mismatch: 8, identity: 0.75

attttatttgacaaattggcggcatctcactg	CRISPR spacer
cctttttttgtcaaattggcggcatacggctg	Protospacer
 .*** **** ************** . .***

68. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

69. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

70. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

71. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

72. spacer 3.7|3069532|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

73. spacer 3.7|3069532|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

74. spacer 3.8|3069593|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

75. spacer 3.18|3070203|32|NC_011083|CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

76. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttcagtggacgaggagttcctcacccgcacc	Protospacer
.   ************** **** ****  *

77. spacer 2.11|3051852|32|NC_011083|PILER-CR matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

78. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

79. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 9, identity: 0.719

tgatgaaatcgtcaataaaattattggcgcgc	CRISPR spacer
aaattggatcgtcaatgaatttattggcgctg	Protospacer
 .** ..*********.** **********

80. spacer 2.25|3052712|32|NC_011083|PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719

attttatttgacaaattggcggcatctcactg	CRISPR spacer
attctatttgacacattggcggcgccgagcca	Protospacer
***.********* *********..*  .*..

81. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

82. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

83. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP034114 (Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

84. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

85. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

86. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
tgtaataatcaataattttattgatttttcga	Protospacer
  *. * **** *.****************

87. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

88. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

89. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

90. spacer 2.30|3051837|32|NC_011083|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

91. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

92. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 9, identity: 0.719

tgatgaaatcgtcaataaaattattggcgcgc	CRISPR spacer
aaattggatcgtcaatgaatttattggcgctg	Protospacer
 .** ..*********.** **********

93. spacer 2.44|3052697|32|NC_011083|CRT,CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719

attttatttgacaaattggcggcatctcactg	CRISPR spacer
attctatttgacacattggcggcgccgagcca	Protospacer
***.********* *********..*  .*..

94. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

95. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

96. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP034114 (Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

97. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

98. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

99. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
tgtaataatcaataattttattgatttttcga	Protospacer
  *. * **** *.****************

100. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

101. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

102. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

103. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

104. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

105. spacer 3.5|3069410|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

106. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

107. spacer 3.10|3069715|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

108. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

109. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

110. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

111. spacer 3.14|3069959|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

112. spacer 3.14|3069959|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

113. spacer 3.17|3070142|32|NC_011083|CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

114. spacer 3.17|3070142|32|NC_011083|CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

115. spacer 3.17|3070142|32|NC_011083|CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

116. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.71

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
tgggctggaccaggagttactccaccgcctt	Protospacer
.*.  ***** *********** *****. .

117. spacer 3.19|3070146|31|NC_011083|PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.71

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
tgggctggaccaggagttactccaccgcctt	Protospacer
.*.  ***** *********** *****. .

118. spacer 2.1|3051246|32|NC_011083|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

119. spacer 2.1|3051246|32|NC_011083|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

120. spacer 2.13|3051974|32|NC_011083|PILER-CR matches to NC_024995 (Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119) position: , mismatch: 10, identity: 0.688

accgttccggtatgatcgaagatacggcaaac	CRISPR spacer
tcccttccgatatgatcgaagatagtcctgtt	Protospacer
 ** *****.**************   * . .

121. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

122. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

123. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

124. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

125. spacer 2.18|3052279|32|NC_011083|PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

126. spacer 2.19|3052340|32|NC_011083|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

127. spacer 2.20|3052401|32|NC_011083|PILER-CR matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgatgaaatcgtcaataaaattattggcgcgc	CRISPR spacer
tgatgaaattgtcaaaaaaattaagcagcttc	Protospacer
*********.***** *******   .  . *

128. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

129. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

130. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

131. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

132. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

133. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

134. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

135. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

136. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

137. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

138. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

139. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

140. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

141. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

142. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

143. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

144. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

145. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

146. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

147. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

148. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

149. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

150. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

151. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

152. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

153. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

154. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

155. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

156. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

157. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

158. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

159. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

160. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

161. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

162. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

163. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

164. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

165. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

166. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

167. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

168. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

169. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

170. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

171. spacer 2.24|3052645|38|NC_011083|PILER-CR matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

172. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP044540 (Borrelia sp. CA690 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
cattaaagtcatttattttattggtttttccg	Protospacer
  *    .***** *********.*******

173. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttctttcatcattgattttcttgatttctcaa	Protospacer
 .. .*.************ *******.**

174. spacer 2.32|3051959|32|NC_011083|CRT,CRISPRCasFinder matches to NC_024995 (Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119) position: , mismatch: 10, identity: 0.688

accgttccggtatgatcgaagatacggcaaac	CRISPR spacer
tcccttccgatatgatcgaagatagtcctgtt	Protospacer
 ** *****.**************   * . .

175. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

176. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

177. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

178. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

179. spacer 2.37|3052264|32|NC_011083|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

180. spacer 2.38|3052325|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

181. spacer 2.39|3052386|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgatgaaatcgtcaataaaattattggcgcgc	CRISPR spacer
tgatgaaattgtcaaaaaaattaagcagcttc	Protospacer
*********.***** *******   .  . *

182. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

183. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

184. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

185. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

186. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

187. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

188. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

189. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

190. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

191. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

192. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

193. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

194. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

195. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

196. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

197. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

198. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

199. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggattcatca	Protospacer
 .***** **********************   .. *.

200. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

201. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

202. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

203. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

204. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

205. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

206. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

207. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

208. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

209. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

210. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

211. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

212. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

213. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

214. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

215. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

216. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

217. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

218. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

219. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

220. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

221. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

222. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

223. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

224. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

225. spacer 2.43|3052630|38|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.737

tctcggtctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggattcatca	Protospacer
* ***** ***** ****************   .. *.

226. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP044540 (Borrelia sp. CA690 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
cattaaagtcatttattttattggtttttccg	Protospacer
  *    .***** *********.*******

227. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttctttcatcattgattttcttgatttctcaa	Protospacer
 .. .*.************ *******.**

228. spacer 3.1|3069166|32|NC_011083|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

229. spacer 3.4|3069349|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

230. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

231. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

232. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

233. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

234. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

235. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

236. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

237. spacer 3.9|3069654|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

238. spacer 3.16|3070081|32|NC_011083|CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

239. spacer 2.27|3052834|32|NC_011083|PILER-CR matches to NZ_CP041669 (Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttgatttattattgattttattcattttatta	Protospacer
 . ..****.************ ***** ..

240. spacer 2.46|3052819|32|NC_011083|CRT,CRISPRCasFinder matches to NZ_CP041669 (Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttgatttattattgattttattcattttatta	Protospacer
 . ..****.************ ***** ..

241. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

242. spacer 3.13|3069898|32|NC_011083|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

372943 : 416539

Enterobacteria_phage(44.44%)

lysis,holin,integrase,coat,terminase,portal,protease

attL 376790:376835|attR 416055:416100

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001043660.1\|372943_373996_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.2e-112	58.5
WP_001285275.1\|374278_375382_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893221.1\|375393_376644_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.1e-98	48.2
376790:376835	attL	NA	NA	NA	NA
WP_000051900.1\|376849_378013_-\|integrase	site-specific integrase	A0A075B8E2	Enterobacteria_phage	2.4e-229	99.7
WP_000016640.1\|378242_378878_-	hypothetical protein	A0A075B8I7	Enterobacteria_phage	1.3e-120	99.5
WP_001277769.1\|378978_379158_-	Eag protein	A0A075B8F7	Enterobacteria_phage	1.6e-28	98.3
WP_000208013.1\|379254_379941_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.3e-53	53.2
WP_000224223.1\|379951_380215_-	hypothetical protein	A0A2P0P958	Salmonella_phage	2.0e-30	72.4
WP_001289978.1\|380216_380702_-	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	1.3e-43	86.1
WP_000812182.1\|380698_381325_-	hypothetical protein	A5VWB1	Enterobacteria_phage	7.1e-71	71.2
WP_001682200.1\|381321_381486_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	1.6e-22	98.1
WP_001111313.1\|381496_381793_-	DUF2856 family protein	Q76H42	Enterobacteria_phage	3.9e-43	90.8
WP_000031375.1\|382123_382741_-	ERF family protein	A0A0N7CFJ3	Salmonella_phage	3.3e-105	100.0
WP_001163402.1\|382737_382881_-	hypothetical protein	A0A075B8I9	Enterobacteria_phage	3.2e-19	100.0
WP_000158027.1\|382870_383059_-	DUF5444 family protein	A0A075B8F9	Enterobacteria_phage	1.4e-30	100.0
WP_000582314.1\|383039_383198_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A075B8H4	Enterobacteria_phage	4.0e-23	100.0
WP_000776964.1\|383283_383595_-	superinfection exclusion protein	A0A075B8E5	Enterobacteria_phage	1.1e-48	100.0
WP_001737461.1\|383742_383946_-	DUF551 domain-containing protein	A0A0N7CAQ5	Salmonella_phage	1.7e-34	100.0
WP_000651935.1\|383945_384182_-	hypothetical protein	A0A075B8J0	Enterobacteria_phage	4.3e-37	100.0
WP_000213983.1\|384218_384413_-	hypothetical protein	A0A075B8G0	Enterobacteria_phage	2.5e-30	100.0
WP_001682202.1\|384627_385206_+	superinfection exclusion B family protein	A0A075B8E6	Enterobacteria_phage	8.8e-92	100.0
WP_000216175.1\|385226_385529_-	hypothetical protein	B8K1E6	Salmonella_phage	1.1e-48	98.0
WP_001095984.1\|385882_386533_-	LexA family transcriptional regulator	B1B6L9	Salmonella_phage	5.4e-122	100.0
WP_000276884.1\|386613_386799_+	Cro/Cl family transcriptional regulator	Q5G8T3	Enterobacteria_phage	5.4e-27	100.0
WP_000424167.1\|386905_387184_+	lambda phage CII family protein	Q5G8T2	Enterobacteria_phage	2.5e-44	100.0
WP_001125981.1\|387218_387365_+	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
WP_000067075.1\|387357_388173_+	replication protein	A0A075B8J2	Enterobacteria_phage	9.4e-148	100.0
WP_001248406.1\|388169_389546_+	DNA helicase	A0A075B8G2	Enterobacteria_phage	3.3e-254	100.0
WP_000736921.1\|389619_390057_+	recombination protein NinB	A8CGE3	Salmonella_phage	1.3e-79	100.0
WP_000679702.1\|390053_390227_+	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000113772.1\|390193_390370_+	NinE family protein	I6RSQ2	Salmonella_phage	4.6e-28	100.0
WP_001531428.1\|390372_390705_+	DUF2591 domain-containing protein	A0A075B8G3	Enterobacteria_phage	3.5e-61	100.0
WP_000950959.1\|390697_390874_+	protein ninF	I6S668	Salmonella_phage	2.5e-26	100.0
WP_001129733.1\|390866_391478_+	recombination protein NinG	A0A075B8E9	Enterobacteria_phage	1.3e-98	100.0
WP_000036317.1\|391474_391699_+	hypothetical protein	Q5G8R9	Enterobacteria_phage	2.2e-38	100.0
WP_000149925.1\|391695_391899_+	phage NinH family protein	A0A075B8J4	Enterobacteria_phage	7.2e-33	100.0
WP_000219131.1\|391879_392059_+	hypothetical protein	A0A1U8QR34	Salmonella_phage	1.4e-24	100.0
WP_001235453.1\|392055_392679_+	antitermination protein	A0A075B8H9	Enterobacteria_phage	2.3e-114	100.0
WP_000286100.1\|393117_393321_+\|holin	phage holin family protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_000074137.1\|393298_393796_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	6.0e-89	97.0
WP_001531485.1\|393884_394322_+\|lysis	lysis protein	O80289	Bacteriophage	9.1e-73	99.3
WP_001177703.1\|394534_395221_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	4.7e-124	99.6
WP_000807785.1\|395523_395766_+	DUF2560 family protein	A0A0M4R322	Salmonella_phage	7.5e-37	100.0
WP_001278047.1\|395767_395947_+	hypothetical protein	Q9AZ02	Salmonella_phage	3.0e-22	91.5
WP_000729925.1\|395970_396459_+	DNA-packaging protein	O80290	Bacteriophage	2.9e-88	100.0
WP_000417849.1\|396436_397936_+\|terminase	terminase large subunit	A0A192Y824	Salmonella_phage	1.4e-306	99.8
WP_000774656.1\|397935_400113_+\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	0.0e+00	99.9
WP_000433852.1\|400126_401038_+	scaffold protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
WP_001196938.1\|401037_402330_+\|coat	coat protein	A0A192Y6V4	Salmonella_phage	3.2e-243	100.0
WP_000684729.1\|402368_402578_+	hypothetical protein	A0A192Y697	Salmonella_phage	1.3e-32	100.0
WP_001166098.1\|402561_403062_+	packaged DNA stabilization gp4 family protein	I1TEJ0	Salmonella_phage	5.5e-90	99.4
WP_001122424.1\|403021_404440_+	packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	7.6e-278	100.0
WP_000774927.1\|404443_405145_+	hypothetical protein	A0A192Y6T9	Salmonella_phage	8.8e-78	100.0
WP_000627697.1\|405144_405600_+	DUF2824 family protein	A0A192Y6V9	Salmonella_phage	5.2e-87	100.0
WP_000964902.1\|405602_406295_+	hypothetical protein	G5DA80	Enterobacteria_phage	1.2e-108	98.7
WP_000246945.1\|406304_407600_+	phage DNA ejection protein	Q716G3	Shigella_phage	2.1e-181	84.5
WP_001029838.1\|407599_409597_+	hypothetical protein	Q716G2	Shigella_phage	0.0e+00	94.9
WP_000749288.1\|409687_410173_-	hypothetical protein	NA	NA	NA	NA
WP_023602519.1\|410575_410863_-	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	1.9e-26	67.8
WP_000129930.1\|410965_412969_+	endorhamnosidase	A0A2H4FWI0	Salmonella_phage	0.0e+00	99.9
WP_000671495.1\|413027_414485_-	glucosyltransferase domain-containing protein	A0A192Y7W8	Salmonella_phage	4.5e-241	100.0
WP_000703640.1\|414474_415407_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	5.5e-176	100.0
WP_000915528.1\|415403_415766_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
WP_001683918.1\|416263_416539_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.9e-23	64.1
416055:416100	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1023163 : 1031186

Dickeya_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|1023163_1024282_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125890.1\|1024278_1026225_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_000447499.1\|1026354_1026576_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1026899_1027220_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|1027250_1029527_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|1029717_1030176_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_001117984.1\|1030449_1030647_-	hypothetical protein	NA	NA	NA	NA
WP_001531374.1\|1030808_1031186_-	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2

DBSCAN-SWA_3

1081795 : 1180953

104

Salmonella_phage(43.1%)

tail,lysis,holin,transposase,terminase,portal,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1081795_1082599_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1082591_1083914_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1083894_1084599_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572753.1\|1084598_1089065_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925883.1\|1089409_1091230_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1091489_1092038_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1092065_1092713_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1092774_1093965_-	aspartate transaminase	NA	NA	NA	NA
WP_000977713.1\|1094149_1095241_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1095847_1097248_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1097448_1097910_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544849.1\|1098226_1099441_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893206.1\|1099685_1101119_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191413.1\|1101199_1102402_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262307.1\|1102596_1103889_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0
WP_000065276.1\|1103933_1104182_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001682304.1\|1104222_1104462_-	DUF4060 family protein	S4TR31	Salmonella_phage	3.3e-37	98.7
WP_000189634.1\|1104467_1105337_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	7.2e-146	86.3
WP_000187054.1\|1105333_1106014_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	3.3e-130	97.8
WP_000100830.1\|1106010_1106796_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	2.4e-148	98.8
WP_000995352.1\|1106801_1107098_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	1.1e-48	100.0
WP_000186242.1\|1107188_1107389_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_000373338.1\|1107676_1107883_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
WP_000091280.1\|1107909_1108344_-	hypothetical protein	NA	NA	NA	NA
WP_000439725.1\|1108345_1108771_-	hypothetical protein	NA	NA	NA	NA
WP_001230956.1\|1108813_1109209_-	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	3.5e-47	72.5
WP_000992434.1\|1109313_1109550_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	9.0e-27	73.1
WP_015675517.1\|1109515_1109890_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	99.2
WP_000024046.1\|1109981_1110887_+	replication protein	A0A0M5M7Y1	Salmonella_phage	9.1e-176	99.7
WP_000788826.1\|1110883_1111585_+	hypothetical protein	A0A0M3ULE2	Salmonella_phage	1.9e-128	99.1
WP_023602525.1\|1111629_1112031_+	ParB/RepB/Spo0J family partition protein	S4TTI6	Salmonella_phage	5.4e-72	98.5
WP_000215887.1\|1112027_1112561_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	8.1e-92	89.8
WP_000224238.1\|1112562_1112823_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	9.0e-36	92.4
WP_000019440.1\|1112863_1113844_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_000208143.1\|1114029_1114431_+	hypothetical protein	I6R0R2	Salmonella_phage	1.2e-18	82.0
WP_000877758.1\|1114538_1115183_+	hypothetical protein	NA	NA	NA	NA
WP_001217669.1\|1115413_1115647_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_014343878.1\|1115763_1116012_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_000929790.1\|1116046_1116649_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096547.1\|1116857_1117469_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
WP_001617856.1\|1117465_1117612_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1117601_1118399_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_000508329.1\|1118565_1118784_+	hypothetical protein	NA	NA	NA	NA
WP_000658038.1\|1119064_1119253_+	hypothetical protein	NA	NA	NA	NA
WP_001682303.1\|1119455_1119758_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_000301013.1\|1119735_1120275_+	lysozyme	K7PLY1	Enterobacteria_phage	2.2e-76	72.4
WP_001080030.1\|1120582_1121077_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	2.2e-59	77.3
WP_000371784.1\|1121287_1121821_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989238.1\|1121777_1123916_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	6.9e-291	72.6
WP_000196190.1\|1123912_1124119_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009205.1\|1124115_1125663_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.1e-176	63.8
WP_077906133.1\|1125586_1127665_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	2.4e-264	69.3
WP_001107908.1\|1127755_1128079_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1128071_1128371_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453192.1\|1128351_1128918_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
WP_000196703.1\|1128914_1129316_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
WP_000132755.1\|1129327_1130077_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478858.1\|1130122_1130521_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1130517_1130847_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_065305406.1\|1130926_1133914_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.5e-262	62.0
WP_000978295.1\|1133910_1134243_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_000410972.1\|1134341_1134866_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.8e-19	35.3
WP_000877926.1\|1134955_1135489_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152416.1\|1135578_1136274_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
WP_000606356.1\|1136283_1137021_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.2e-113	75.6
WP_020867839.1\|1136918_1137623_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.0e-66	62.6
WP_000033414.1\|1137694_1141045_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	69.3
WP_000178849.1\|1141083_1141326_+	hypothetical protein	NA	NA	NA	NA
WP_001532020.1\|1141379_1143755_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.9e-87	64.9
WP_031618324.1\|1144255_1144576_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	4.9e-44	79.2
WP_000143158.1\|1144565_1145147_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.8e-92	87.4
WP_000161705.1\|1145343_1146066_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000343758.1\|1146716_1147937_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_071531551.1\|1147933_1148431_-	hypothetical protein	NA	NA	NA	NA
WP_000193784.1\|1148865_1151478_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1151685_1152696_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1152861_1153404_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1153400_1154510_-	YcbX family protein	NA	NA	NA	NA
WP_001086485.1\|1154608_1156717_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1156729_1158637_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|1158651_1159905_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1159909_1161550_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1161546_1162110_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1162365_1162533_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1162632_1163151_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156454.1\|1163219_1164980_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1165165_1165618_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1165689_1166742_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1167098_1167608_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1167824_1168430_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1168416_1170570_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1170588_1171035_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1171158_1173213_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1173248_1173707_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847716.1\|1173801_1174464_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1174637_1175051_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1175095_1175413_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1175470_1176682_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859416.1\|1176896_1177445_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1177470_1178250_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000072884.1\|1178298_1178580_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1178576_1178906_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|1178992_1179652_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000938191.1\|1180272_1180953_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_4

1515699 : 1556062

Escherichia_phage(33.33%)

integrase,transposase

attL 1523809:1523824|attR 1558621:1558636

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067856.1\|1515699_1516404_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	100.0
WP_000904906.1\|1517639_1518254_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
WP_085959879.1\|1518318_1519447_+\|transposase	IS3-like element IS1133 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1
WP_001082319.1\|1519554_1520358_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|1520357_1521194_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000689410.1\|1521321_1521792_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.8e-19	37.1
WP_001243650.1\|1522206_1522452_+	hypothetical protein	NA	NA	NA	NA
WP_001235772.1\|1522471_1523689_+	DNA topoisomerase III	NA	NA	NA	NA
1523809:1523824	attL	NA	NA	NA	NA
WP_001067856.1\|1524336_1525041_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	100.0
WP_001235713.1\|1525219_1525777_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|1525959_1526820_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000983249.1\|1527526_1528312_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
WP_000376623.1\|1528846_1529347_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|1529474_1530314_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|1530307_1530655_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001067856.1\|1530745_1531450_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	100.0
WP_001072144.1\|1531577_1532162_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.2e-49	58.7
WP_000179435.1\|1532240_1533230_+	ATP-binding protein	NA	NA	NA	NA
WP_000253881.1\|1533250_1535794_+	S8 family peptidase	NA	NA	NA	NA
WP_001255889.1\|1536739_1537705_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_000034358.1\|1538408_1538663_+	hypothetical protein	NA	NA	NA	NA
WP_000273954.1\|1538741_1539059_+	hypothetical protein	NA	NA	NA	NA
WP_047333922.1\|1539160_1539430_+	hypothetical protein	NA	NA	NA	NA
WP_000393195.1\|1539489_1539681_+	hypothetical protein	NA	NA	NA	NA
WP_000158825.1\|1539795_1540233_+	hypothetical protein	NA	NA	NA	NA
WP_165799451.1\|1540287_1540446_-	hypothetical protein	NA	NA	NA	NA
WP_161800395.1\|1540507_1540615_+	hypothetical protein	NA	NA	NA	NA
WP_000874729.1\|1540738_1543324_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_000162862.1\|1543588_1544455_-	hypothetical protein	NA	NA	NA	NA
WP_012512938.1\|1544663_1548101_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_001090457.1\|1548097_1548454_+	hypothetical protein	NA	NA	NA	NA
WP_000821094.1\|1548504_1548765_-	hypothetical protein	NA	NA	NA	NA
WP_000799172.1\|1548936_1549125_+	hypothetical protein	NA	NA	NA	NA
WP_000415771.1\|1549127_1549670_+	hypothetical protein	NA	NA	NA	NA
WP_001245879.1\|1549756_1552492_+	conjugal transfer mating pair stabilization protein TraN	NA	NA	NA	NA
WP_024132227.1\|1552668_1552887_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012512940.1\|1553106_1554348_+	replication initiation protein	NA	NA	NA	NA
WP_000126620.1\|1554482_1554851_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000868888.1\|1554847_1556062_-\|integrase	site-specific integrase	A0A1B0WMK0	Flavobacterium_phage	3.0e-09	30.7
1558621:1558636	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2009486 : 2016943

Salmonella_phage(42.86%)

tail,integrase,transposase

attL 2006162:2006184|attR 2017074:2017096

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2006162:2006184	attL	NA	NA	NA	NA
WP_001682430.1\|2009486_2009726_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.1e-16	93.3
WP_000457876.1\|2010306_2010432_-	hypothetical protein	NA	NA	NA	NA
WP_000019440.1\|2010763_2011744_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_010989029.1\|2012200_2012401_+	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_015675561.1\|2012497_2012998_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	8.8e-64	78.0
WP_000789529.1\|2014103_2014271_+	lytic enzyme	NA	NA	NA	NA
WP_001050883.1\|2014527_2015061_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_001013467.1\|2015114_2015345_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_023602538.1\|2015534_2016029_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	2.0e-20	67.6
WP_176731523.1\|2016100_2016943_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-71	50.9
2017074:2017096	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2121948 : 2129200

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157304.1\|2121948_2123379_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4
WP_000377037.1\|2123452_2124148_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	1.6e-07	27.1
WP_000107434.1\|2124227_2124539_-	hypothetical protein	NA	NA	NA	NA
WP_001080662.1\|2125189_2126386_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_024131109.1\|2126643_2126832_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2126842_2127055_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457664.1\|2127509_2128778_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.2e-226	92.2
WP_000394197.1\|2128780_2129200_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_7

2218544 : 2229050

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2218544_2219858_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2219884_2220964_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2220968_2221742_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2221738_2222731_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2222736_2223288_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2223288_2224167_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2224214_2225114_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697840.1\|2225113_2226199_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2226575_2227469_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111845.1\|2227646_2229050_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.8e-21	26.5

DBSCAN-SWA_8

2297326 : 2306497

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2297326_2299360_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2299600_2300059_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|2300230_2300761_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2300817_2301285_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2301331_2302051_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2302047_2303733_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240417.1\|2303955_2304687_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2304746_2304854_+	protein YohO	NA	NA	NA	NA
WP_000824857.1\|2304834_2305566_-	ABC transporter permease	NA	NA	NA	NA
WP_000569165.1\|2305549_2306497_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_9

2325904 : 2392291

Salmonella_phage(25.0%)

tail,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989295.1\|2325904_2326600_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000553526.1\|2326753_2327638_+	cytidine deaminase	NA	NA	NA	NA
WP_000920081.1\|2327814_2328534_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_000605187.1\|2328530_2328776_+	DUF2542 family protein	NA	NA	NA	NA
WP_001136394.1\|2328980_2330222_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_000956097.1\|2330215_2331451_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_001275101.1\|2331525_2332536_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_000535907.1\|2332551_2334072_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
WP_001036943.1\|2334205_2335204_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_000628631.1\|2335702_2336725_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_001520237.1\|2336874_2338017_-	DUF418 family protein	NA	NA	NA	NA
WP_001139611.1\|2338031_2338700_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
WP_000425488.1\|2339029_2339887_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000876817.1\|2339875_2340265_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001531764.1\|2340269_2341637_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000022910.1\|2341853_2342741_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000023807.1\|2342773_2344096_+	MFS transporter	NA	NA	NA	NA
WP_000488244.1\|2344139_2346131_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
WP_000535000.1\|2346476_2347946_-	lysine-specific permease	NA	NA	NA	NA
WP_000548316.1\|2348135_2348999_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000137966.1\|2349119_2350169_+	YeiH family protein	NA	NA	NA	NA
WP_000873906.1\|2350247_2351105_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.3e-22	28.5
WP_000854395.1\|2351169_2352858_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_000091249.1\|2352874_2353813_-	1-phosphofructokinase	NA	NA	NA	NA
WP_000487287.1\|2353812_2354943_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_000551937.1\|2355310_2356492_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_001213897.1\|2356555_2357221_-	membrane protein	NA	NA	NA	NA
WP_001519564.1\|2357222_2357345_-	membrane protein	NA	NA	NA	NA
WP_001523448.1\|2357732_2357987_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001136822.1\|2358310_2358883_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_000169346.1\|2359095_2360082_+	GTP-binding protein	NA	NA	NA	NA
WP_000178095.1\|2360111_2360831_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000241015.1\|2361244_2361817_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
WP_000957755.1\|2362142_2363699_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000561742.1\|2363805_2365611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000501626.1\|2365620_2366715_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_001137747.1\|2366714_2367740_+	ABC transporter permease	NA	NA	NA	NA
WP_000222013.1\|2367741_2369331_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	7.2e-19	32.1
WP_001094639.1\|2369334_2369679_-	hypothetical protein	NA	NA	NA	NA
WP_000213347.1\|2370069_2371260_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
WP_001234834.1\|2371287_2371983_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_000578130.1\|2372134_2373895_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.4e-100	41.8
WP_000494192.1\|2374019_2374304_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_000033443.1\|2374412_2375033_-	hypothetical protein	NA	NA	NA	NA
WP_000050806.1\|2375060_2376068_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
WP_001135904.1\|2376247_2376475_+	YejL family protein	NA	NA	NA	NA
WP_000256150.1\|2376506_2378267_+	cardiolipin transport protein PbgA	NA	NA	NA	NA
WP_000806401.1\|2378547_2379051_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|2379078_2379369_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000022213.1\|2381592_2382036_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215678.1\|2382413_2382941_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	5.3e-11	31.3
WP_000554739.1\|2382943_2384185_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|2384777_2385107_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000894638.1\|2385403_2386735_+	NTPase	R9TRQ8	Vibrio_phage	4.6e-19	28.5
WP_010989045.1\|2386763_2387132_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_001202279.1\|2387146_2388136_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_001115840.1\|2388464_2390831_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001113462.1\|2390999_2391203_-\|tail	tail protein	NA	NA	NA	NA
WP_000624225.1\|2391499_2392291_-\|tail	tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_10

3364969 : 3419862

Cronobacter_phage(61.9%)

tail,head,holin,integrase,capsid,terminase,portal,tRNA,plate

attL 3362642:3362662|attR 3410640:3410660

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3362642:3362662	attL	NA	NA	NA	NA
WP_001264394.1\|3364969_3365983_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
WP_001144069.1\|3366210_3366426_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_000918865.1\|3366661_3368407_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001519776.1\|3368556_3370404_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000237776.1\|3370527_3371034_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_001128281.1\|3371456_3371618_+	hypothetical protein	NA	NA	NA	NA
WP_000977534.1\|3372206_3373910_-	hypothetical protein	F1BUJ7	Cronobacter_phage	2.2e-223	81.3
WP_000200796.1\|3373909_3374455_-	hypothetical protein	F1BUJ9	Cronobacter_phage	1.4e-59	72.0
WP_000267951.1\|3374426_3375152_-	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
WP_001215677.1\|3375141_3375672_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
WP_000083767.1\|3375674_3377687_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
WP_001001827.1\|3377696_3378284_-	hypothetical protein	F1BUK5	Cronobacter_phage	2.1e-88	81.5
WP_000136922.1\|3378276_3379461_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	2.0e-178	78.1
WP_001002797.1\|3379457_3379787_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811089.1\|3379783_3381754_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.6e-254	67.4
WP_000411340.1\|3381941_3382199_-\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_000376374.1\|3382345_3382678_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.0e-35	70.0
WP_000175560.1\|3382677_3383019_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154425.1\|3383015_3383309_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000166743.1\|3383318_3383774_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_000220205.1\|3383770_3384898_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	3.3e-175	83.7
WP_000560081.1\|3384894_3385602_-	hypothetical protein	F1BUL6	Cronobacter_phage	3.4e-101	76.5
WP_000084220.1\|3385598_3386105_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_023181179.1\|3386101_3386554_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-63	81.3
WP_000398492.1\|3386650_3386845_-	hypothetical protein	Q8W634	Enterobacteria_phage	3.3e-11	58.6
WP_001218534.1\|3386848_3387553_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.0e-86	67.4
WP_000550496.1\|3387556_3388579_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_000018798.1\|3388640_3389441_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.2e-76	54.8
WP_001151944.1\|3389601_3391377_+	hypothetical protein	F1BUM5	Cronobacter_phage	2.2e-290	83.1
WP_000038207.1\|3391373_3392435_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	5.1e-162	77.1
WP_001552031.1\|3392431_3392755_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000353141.1\|3392728_3392935_-	hypothetical protein	NA	NA	NA	NA
WP_000170880.1\|3393054_3395076_-	replication endonuclease	F1BUM9	Cronobacter_phage	9.4e-298	74.8
WP_000279405.1\|3395072_3395933_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	1.3e-131	82.7
WP_000153510.1\|3395922_3396252_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	2.5e-11	44.0
WP_000422609.1\|3396248_3396845_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.8e-74	72.3
WP_071601531.1\|3396835_3397012_-	DUF2732 family protein	NA	NA	NA	NA
WP_000022787.1\|3397157_3397559_-	hypothetical protein	F1BUN2	Cronobacter_phage	3.2e-48	66.2
WP_000996838.1\|3397558_3397984_-	hypothetical protein	F1BUN5	Cronobacter_phage	7.6e-24	50.4
WP_000643375.1\|3397973_3398201_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000460877.1\|3398210_3398714_-	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
WP_000102874.1\|3399101_3399683_+	phage repressor protein CI	F1BUS8	Erwinia_phage	2.5e-33	39.8
WP_000568369.1\|3399699_3400266_+	PH domain-containing protein	Q4ZA70	Staphylococcus_virus	3.0e-20	35.0
WP_001145216.1\|3400269_3401307_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	6.6e-122	64.7
WP_000213760.1\|3401517_3402285_-	siderophore-interacting protein	NA	NA	NA	NA
WP_000983441.1\|3402516_3403164_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478472.1\|3403160_3404726_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9
WP_000094651.1\|3405113_3406634_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	6.4e-33	48.5
WP_001536702.1\|3407063_3408443_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	3.8e-32	29.0
WP_000121536.1\|3408612_3410631_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_000019983.1\|3410711_3411848_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
3410640:3410660	attR	NA	NA	NA	NA
WP_000202966.1\|3411933_3412431_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000951045.1\|3412582_3413275_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_000617690.1\|3413363_3414362_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001098833.1\|3414634_3415603_+	TerC family protein	I7HPH5	Enterobacteria_phage	5.0e-39	34.9
WP_000235361.1\|3415857_3417102_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_000422143.1\|3417551_3418214_+	DedA family protein	NA	NA	NA	NA
WP_000917516.1\|3418217_3418601_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000877297.1\|3418745_3419114_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_000031219.1\|3419155_3419461_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000785626.1\|3419463_3419862_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_11

4413388 : 4460909

Burkholderia_phage(40.91%)

tail,holin,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587739.1\|4413388_4414030_-	hypothetical protein	A0A077SLK3	Escherichia_phage	4.6e-33	37.9
WP_024132246.1\|4414608_4415025_-	serine acetyltransferase	NA	NA	NA	NA
WP_000084336.1\|4415405_4415861_-	hypothetical protein	NA	NA	NA	NA
WP_001151758.1\|4415857_4416472_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368193.1\|4416478_4418137_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.8e-52	52.7
WP_000359509.1\|4418139_4418772_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	8.6e-24	56.4
WP_000951734.1\|4418764_4419880_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
WP_001093501.1\|4419870_4420230_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000632053.1\|4420393_4421941_-	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_000703633.1\|4421940_4422870_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000593182.1\|4422866_4423229_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4423556_4424279_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4424288_4425332_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4425319_4425529_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271420.1\|4425528_4426482_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|4426481_4428836_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|4428932_4429061_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4429020_4429338_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907497.1\|4429389_4429914_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.3e-67	69.0
WP_000729852.1\|4429913_4431341_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4431330_4431528_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4431524_4431980_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|4432139_4432454_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|4432466_4433072_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|4433074_4433362_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4433937_4434285_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_000136400.1\|4434417_4435767_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790037.1\|4436111_4437761_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|4438204_4438447_+	outer membrane protein	NA	NA	NA	NA
WP_022742863.1\|4438480_4439149_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977979.1\|4439145_4439883_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000750804.1\|4439882_4441979_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982749.1\|4442121_4442532_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252085.1\|4442697_4443588_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382573.1\|4443602_4445147_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695415.1\|4445278_4446469_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179176.1\|4446830_4447940_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973681.1\|4448028_4449387_+	maltoporin	NA	NA	NA	NA
WP_000782497.1\|4449550_4450468_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019230.1\|4450648_4451146_+	chorismate lyase	NA	NA	NA	NA
WP_000455249.1\|4451159_4452032_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017360.1\|4452130_4454551_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4454721_4455090_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4455198_4455807_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001128112.1\|4455985_4457311_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001575282.1\|4457307_4457421_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4457442_4457652_+	CsbD family protein	NA	NA	NA	NA
WP_000416271.1\|4457750_4458266_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001039342.1\|4458512_4459823_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_001182224.1\|4459910_4460909_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_12

4600288 : 4662656

Vibrio_phage(15.38%)

integrase,protease,transposase,tRNA

attL 4596797:4596812|attR 4643631:4643646

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4596797:4596812	attL	NA	NA	NA	NA
WP_001352368.1\|4600288_4601497_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000599533.1\|4601862_4603068_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_000562369.1\|4603511_4603793_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_085948175.1\|4603868_4605075_+\|transposase	IS3-like element ISEc48 family transposase	Q9ZXG3	Shigella_phage	7.0e-99	62.5
WP_000460651.1\|4605176_4605563_+	hypothetical protein	NA	NA	NA	NA
WP_001284954.1\|4605570_4606257_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088605.1\|4606234_4606858_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089068.1\|4606939_4608145_+	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_000019440.1\|4608733_4609714_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_001398114.1\|4610295_4611033_+	porin family protein	NA	NA	NA	NA
WP_000228490.1\|4611452_4612349_+	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	2.1e-31	27.3
WP_001207396.1\|4612397_4613477_+	hypothetical protein	NA	NA	NA	NA
WP_001100184.1\|4613523_4615095_+	ATP--cob(I)alamin adenosyltransferase	NA	NA	NA	NA
WP_000766272.1\|4615091_4615358_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001238008.1\|4615497_4615695_+	hypothetical protein	NA	NA	NA	NA
WP_000281242.1\|4615760_4617434_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_000999859.1\|4617577_4618621_-	hypothetical protein	NA	NA	NA	NA
WP_001218741.1\|4619068_4620259_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.8e-122	53.1
WP_001188508.1\|4620626_4621202_-	transcriptional regulator	NA	NA	NA	NA
WP_000068882.1\|4621238_4622942_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_000887832.1\|4622917_4623265_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000637595.1\|4623385_4624687_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000069440.1\|4624801_4626238_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_001267291.1\|4626578_4627055_+	membrane protein FxsA	NA	NA	NA	NA
WP_001670701.1\|4627113_4628355_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_000027827.1\|4628630_4628924_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	1.2e-12	43.3
WP_000729126.1\|4628967_4630614_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.2e-189	68.7
WP_000558210.1\|4630848_4631202_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_001229227.1\|4631249_4632107_-	YjeJ family protein	NA	NA	NA	NA
WP_000940484.1\|4632388_4633417_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000257282.1\|4633457_4634024_+	elongation factor P	NA	NA	NA	NA
WP_000977686.1\|4634084_4634219_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_000239598.1\|4634326_4634473_+	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000912959.1\|4634503_4635091_-	response regulator transcription factor	NA	NA	NA	NA
WP_000118469.1\|4635347_4635665_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_001238396.1\|4635681_4636215_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	9.4e-48	54.8
WP_000609650.1\|4636326_4636686_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000208750.1\|4636696_4637092_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_000829509.1\|4637102_4637837_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_001192954.1\|4637829_4639620_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000004794.1\|4639942_4640920_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	1.7e-26	29.1
WP_000149871.1\|4641145_4642648_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_001737341.1\|4642712_4643033_+	hypothetical protein	NA	NA	NA	NA
WP_001236755.1\|4643169_4646496_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
4643631:4643646	attR	NA	NA	NA	NA
WP_000934949.1\|4646514_4647483_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_000041945.1\|4647574_4648627_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_001271546.1\|4648733_4649279_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-29	41.6
WP_000727897.1\|4649340_4650081_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001670426.1\|4651165_4652305_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_000968675.1\|4652303_4653851_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_000981984.1\|4653822_4654284_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_000640354.1\|4654300_4655623_+	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	1.8e-15	29.2
WP_001122540.1\|4655632_4657489_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.8
WP_001000736.1\|4657481_4658432_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051892.1\|4658514_4658823_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460338.1\|4658894_4660175_+	GTPase HflX	NA	NA	NA	NA
WP_000312505.1\|4660389_4661649_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_001232417.1\|4661651_4662656_+\|protease	protease modulator HflC	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011083

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection