CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	10 crisprs	WYL,DEDDh,csa3,cas3,DinG,PD-DExK	1	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011071_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_1

750417-750497

Orphan

Consensus_repeat	Method
CTTGTAGAGTCGAGCCATGCTCGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_1

>merge|NC_011071|1|750417-750497|CRISPRCasFinder
CTTGTAGAGTCGAGCCATGCTCGACTATCGCGCGCAGCGCAGAATGTGTGGTCCCCTTGTAGAGTCGAGCCATGCTCGACT

>NC_011071|1|1|750417-750497|CRISPRCasFinder
CTTGTAGAGTCGAGCCATGCTCGACT	ATCGCGCGCAGCGCAGAATGTGTGGTCCC
CTTGTAGAGTCGAGCCATGCTCGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012510077.1\|757001_757433_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510067.1\|738454_739900_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NC_011071.1\|WP_012510068.1\|742834_745546_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_011071.1\|WP_012510078.1\|757514_758432_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NC_011071.1\|WP_012510076.1\|754905_755733_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NC_011071.1\|WP_004144283.1\|755847_756843_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_011071.1\|WP_012510075.1\|752742_754635_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287142
NC_011071.1\|WP_004144050.1\|740139_742662_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_011071.1\|WP_012510073.1\|750621_751677_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NC_011071.1\|WP_012510071.1\|747897_749613_+\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153248
NC_011071.1\|WP_012510069.1\|745662_746169_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_011071.1\|WP_012510072.1\|749609_750410_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NC_011071.1\|WP_012510066.1\|737731_738205_-\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NC_011071.1\|WP_012510070.1\|746352_747564_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NC_011071.1\|WP_012510064.1\|736540_737176_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_011071.1\|WP_012510074.1\|751735_752734_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NC_011071.1\|WP_012510065.1\|737246_737732_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510079.1\|758527_759715_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_011071.1\|WP_012510080.1\|759768_760734_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_011071.1\|WP_004144334.1\|760759_762058_-\|nucleoside-transporter-NupC	unknown	unknown	gnl\|CDD\|224883

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012510067.1\|738454_739900_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NC_011071.1\|WP_012510078.1\|757514_758432_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.06125e-83
NC_011071.1\|WP_012510076.1\|754905_755733_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	8.39349e-26
NC_011071.1\|WP_004144283.1\|755847_756843_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	5.11867e-148
NC_011071.1\|WP_012510075.1\|752742_754635_-\|hypothetical-protein	gnl\|CDD\|287142	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein. This domain is found in various bacterial hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. The exact function of the domain has not, as yet, been established.	0.00515049
NC_011071.1\|WP_004144050.1\|740139_742662_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	6.68124e-57
NC_011071.1\|WP_012510073.1\|750621_751677_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.84489e-25
NC_011071.1\|WP_012510071.1\|747897_749613_+\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	4.28949e-57
NC_011071.1\|WP_012510069.1\|745662_746169_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	3.54004e-64
NC_011071.1\|WP_012510072.1\|749609_750410_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.43245e-69
NC_011071.1\|WP_012510066.1\|737731_738205_-\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.87292e-75
NC_011071.1\|WP_012510070.1\|746352_747564_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NC_011071.1\|WP_012510064.1\|736540_737176_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	2.34846e-13
NC_011071.1\|WP_012510074.1\|751735_752734_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.09475e-43
NC_011071.1\|WP_012510068.1\|742834_745546_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_011071.1\|WP_012510079.1\|758527_759715_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.42314e-71
NC_011071.1\|WP_012510080.1\|759768_760734_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	7.69446e-100
NC_011071.1\|WP_004144334.1\|760759_762058_-\|nucleoside-transporter-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.63974e-142

>NC_011071.1|WP_012510072.1|749609_750410_+|UDP-2,3-diacylglucosamine-diphosphatase
MSALANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIIYIPGNHDASLRHVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDDYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALIERDGLVYANDGDWVESLTALAEDHDGALRLLDHNGQTLVELPGARIKQAA
>NC_011071.1|WP_012510071.1|747897_749613_+|lysophospholipid-acyltransferase-family-protein
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSAGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLCIGEPMQLGKGGDPGAQLLAVRRALYALGRNGTTADAAAHGGPEPLAAPVPPSQVAAGIAAATQLGQTADGKQILLATCTADSPLLLELGRLRELTFRRVGEGTGRSRDLDAFDPQYEHIVIWDAAAQRIAGAYRIMRGAHALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYYSGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGTPA
>NC_011071.1|WP_012510070.1|746352_747564_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVIVDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLVHPMYQQTAAYGHFGRKPKEFSYLNGEGETVNATAFSWEKTDRAAALRADAKLK
>NC_011071.1|WP_012510069.1|745662_746169_-|acyl-CoA-thioesterase
MSTELKTHQLSMTVLMSPEMANFSGKVHGGAILRLLDQVAYACASRYAGRYVVTLSVDQVMFRQPIAVGELVTFLASVNHTGTSSMEIGVKVVAEDILKRSVRHANSCFFTMVAVDEEGRPTPVPPLQPTTSDEKRRQAAALIRRQLRQEMEQRHLELLASNPPSPEE
>NC_011071.1|WP_012510068.1|742834_745546_+|phosphoenolpyruvate-carboxylase
MNEYRSSIEFASPDLPLRDDVRRLGALVGDLLVEQVSAAFLDDVEDVRTRAIARRENQAPLSELADGLAGRAPQQAETMVRAFSTYFQVVNIAERVHRIRRRRDYQRAGTAGAQPDGLQDALQHLKAQGVGLDELAQWLPRIDIEPVFTAHPTEAVRRALLEKEQLMVASLVDNLDGQRTPGEAAADAARFRMALTASWQTTDSSPVRPTVDDEREHVGFYLVQVLYRVIPVLYESLQQALRDTYGEELPLPRLLRFGTWVGGDMDGNPNVDATTIRNTLDAQRQAVLGRYQKELLQLASLLSQSTERVGVSNALQARVAHYQQLLPQVQSRPRHADMPYRLLNDRMRARLQATLDDGAGAYAGPDELIDDLQLILDSLRANRGEHAGGFAVQRLLWRVKTFGFHLARLDVRQESSVHARALAAVLGGDAAWEGLDVLGRARLLAPHAGGEVPLPKGEDEGNQRLDAVFAALADARARHGGDALGSYIISMAHDRSDVLAVLALARRGGLVDDNDAVPLDIAPLFETVDDLKRGTATLRDLLADPVYRAHLRARDDVQMVMLGYSDSSKDGGIAASRWGLQRAQVELLEVAAEAGIRLTFFHGRGGSISRGGGKTTHAVDASPRGSIDGRLRVTEQGEVIHRKYGIRALALRSLEQATGAVLRASLRPRAVEPREDDWRPVMDVVAGSSSEVYRAFVGQSGFMDYFRTATPIDVIERMTLGSRPSRRLGQDAALGNLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEQTLREMARDWPFFRTFLDDIAMVLSKGDITIAEQFSKLSGELHGRFFPQVQRELELTRHWLLALMGQRTLLDHDARLSLSIRLRNPYVDPISVLQVDLLQRWRASGGEDDDLLRALVACVNGVSQGVQNTG
>NC_011071.1|WP_004144050.1|740139_742662_+|prolyl-oligopeptidase-family-serine-peptidase
MSMHPRRNRRLTGLVLSMALLAVAPLALAAAPKAAQGQTQAQGATGYELPSAALQAVVDAPRAPSLYLSPRRDVAAMMQMPSLPSIQVVAQPELKLAGLRINPRTFSDSRFSFGEKLWLMNVADGKERQISGLPAKLSIASVMWSPDQKWLAFNQVDAASGANELWLVDVAGGSARRLVAGLNTVIGSGYQWLPDSRGLVVFTRPANLGAAPAADGIPTGPAVQQTSQGGGVVSIRTYQDLLKNEADARQFDYYATTQPMEVSLDGSTRAIGTAGIFMGFAVSPDGRFVLRQPVQRPYSYVVPVSSFPRRIEVIDRASGKLVHTVAVRPLVEGLPTGNDAEVTGVRDISWRGDADATLVWAEAQDGGDPNRDAKVRDAVLMQAAPFDTPPVTLAQLGSRLAGISWGRGDLALLTESWWKTRKTKTWLIAPDNASAEPRLLWDRDAQDRYSDPGRPLLSSDDRGRSLLQTSADGSSLYLAGAGASPEGDRPFVDRFDVATGKATRLFHSQAPSYALPVALLDNQASSLLLSRESPDEPANFYVQSLSDAGAAPRALTHFAHPLPQLKGVQKEQIRYKRKDGVDLTATLLLPPGYDPKRDGPRPLLMWAYPGEFKSAAAASQVTDSPYRFNAVSYWGPQAFLAKGYVVLASPSMPIIGEGDKEPNDTYIEQLVANAQAAVDEVVRRGVTDRDHIAIGGHSYGAFMTANLLAHTRLFKAGIARSGAYNRTLTPFGFQAEERNYWQAQDVYQKMAPFNYADKIKDPILFIHGVDDNNSGTFPIQSERMFAAVKGLGGTARLVMLPNESHAYRARESIMTMLAESERWLEQTIGPADQGKAKKKR
>NC_011071.1|WP_012510067.1|738454_739900_-|adenosylhomocysteinase
MNAVAKTFSTEGDYKIRDITLADWGRKELDIAEHEMPGLMSIRRKHAASLPLKGVRVTGSLHMTIQTAVLIETLKDIGADVRWASCNIFSTQDHAAAAIAATGTPVFAWKGESLEEYWDCTLDALTFTLADGTLTGPELVVDDGGDVTLLIHKGYELENGSTWVNEPAASHEEQVIKNLLKRVATERPGYWGRVVKDWKGVSEETTTGVHRLYQLAQAGILLIPAINVNDSVTKSKFDNLYGCRESLADGLKRAMDVMLAGKVAVVCGYGDVGKGCAASLRAYGARVIVTEIDPICALQAAMEGYEVNTIESTLGRADLYVTTTGNKDIIRIEHLSAMKDQAIVCNIGHFDNEIQVDALVGFKGVQHVNIKPQVDKYIFPNGNAIFLLAEGRLVNLGCATGHPSFVMSNSFANQTLAQIDLWANKDSYENKVYLLPKKLDEEVARLHLEKIGVKLTTLSQEQADYIGVPVEGPFKPDHYRY
>NC_011071.1|WP_012510066.1|737731_738205_-|Cys-tRNA(Pro)-deacylase
MTPAINLLKREKIAHTVRSYVHDAHAESYGGEAVEKLGLDPAQVFKTLLASTETHELLVAIVPVAGQLDLKALAEAAGCKKCEMAAADSAQRATGYLVGGISPLGQKKRLRTFLDASAQVLPSLHVSAGRRGLEVELAPADLLRLTAGHFAAIGKAR
>NC_011071.1|WP_012510065.1|737246_737732_-|hypothetical-protein
MRWPWSAAPLPRLEDAQADVVLQDLLSRDGARITDAARTVAWLFSPSSLEALATHADLIEQRCQGIALGGMLISNQAHLKAALKRLRYWRAREGCLCALNPGYPFFDPRRLLEQGQMRLLSVGEAEGGWGECHAVACAQCGRHWQAIDREYHYPWWEWMAA
>NC_011071.1|WP_012510064.1|736540_737176_+|energy-transducer-TonB
MASWARMILMVLAGLLPAITAPAAAPVAETACSPLAAVPGLRDRGVTALSMRPEGGRCVVEVTAADGKALLRQQQMLSVLAQHACAAPAEVTVDGAQMSLTLRLPKHCAARGARDLFAGEGIPWMQPRGVSPRYPPEAMQQGLSGRSQLKALIDAQGAVAAVIVETSSGYALLDEAAVEELRGWRFVRADAESTVPELTIVRVPMRYELVE
>NC_011071.1|WP_012510073.1|750621_751677_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAVIAPPGHRRAALLAGAALGTLPDLDALWLGFTAADPVANMIEHRSFSHSLLVLPWVAALIWWLFKRFGNGRVAQSPVRWFWAIQLALVTHPMLDAFTVYGTQLWWPLRPHPTMGSSVFIIDPGYTVWLLLGCVLAWFGRARPWAGKVLGVALLLSSGYLGWGLIAKAQVDRAAQQSLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPNGYVVGDRSLVADHGPMQFEGHPSNVQALREAEGIPAVQQLQWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFAVAEQVDGQWRAITPEQPRVDYSSPAARADAGRRLAAMWQRIWHAPAVPSAGAAE
>NC_011071.1|WP_012510074.1|751735_752734_-|glycosyltransferase-family-2-protein
MGTAQPATPTPRIAVVIPCYRVTRHVLAVLAAIDPTVTAIYCVDDACPDGSGRLIQAEASDPRVTVLFHEHNRGVGGAIKTGYRAAIADGMDILVKVDGDGQMDPALLMDFVTPIAEGHADYTKGNRFWNLTHIRRMPPVRRLGNLLLSFMTKASSGYWQVFDPTNGYTAIHARVASHLKLDAVSDRYFFETDMLFRLNTVRAVVQDVAMDAHYGDETSNLRIGRILGEFTFKHMRNTLKRIAYNYFLRDLSIASLELVAGSSLLTFGGLFGLYHWIRSAQADVATPVGTIMITMVALISGLQFLLAFVGFDIANVPRQVLNRSIKLNRAPQ
>NC_011071.1|WP_012510075.1|752742_754635_-|hypothetical-protein
MDPTFENEMSDSAPTPLPAHDASLLGGLRSSQARLFAGIVALLCILYVAFALTPSSYALAYEYLGLAPQQPLLGTARYIRTDEWMVFTPYIQIAVGNDFGQVNAHSAYHESLRTFQALPLLDWGLLFKPYHWAFFLLPAANAYSFFFMFMAMAFLCGWALFLRQLRLPALAAMLVSVTLFFAPFVQVWWTSNAGAFALAPWAAVAWLRIGHRGLRIAASAYALAAWLVAVSYPPFIISSLLAMAVLVLAFRRDAITLRRLFDAAVAGAIALAVFVGYFHDIIPIVRNTVYPGQRQSAGGGVGLTTLLAHLFPNLMTYRFAPLPLFKASNDCEIAVLGSLLPLFTVVLADGARLRAWAGSHRSTLLILAAGLLLIACWIFLPIPAVVGKLTGLSMVPPARALLAFGLLLNIGCAMILVRCGVRLERWRLLLLAALLVAGSLAKFLFGEGQLSRLHSTADALPYLCLAALAIAAKRPRLSVHAASLVLATAALANLLGNGLFNPVQPAGPIFAMDRTAVLQSLQARGARNNTEGVLVAPGGFGALLPGAGIAAVNHVLYLPQLDYFGRYFPAMQDEAFNFTFNRYHHITVAADSDMPRVLQGDLVEVPANILLAAPACATPGTRDCRAGAQP
>NC_011071.1|WP_012510076.1|754905_755733_-|methyltransferase-domain-containing-protein
MTPPISSPTYLHGFSGTEQQRLMTQARLLESSIFGQIDYSGARRLLEVGSGVGAQTEILLRRFPELHVTGVDLSETQLQTARENLARTPWCSDRYTLQQADAGELPFEARSFDSAFLCWVLEHVPSPARVLSEVRRVLAPGSPVYITEVMNASFLLDPYSPHIWRYWMAFNDFQYDHGGDPFVGAKLGNLLLAGGFRDVHTEIKTIHLDNREPARRKTMIAFWEQLLLSAADPLLQAGSVDEETVEGMRREFRLVQNDPNAVFFYSFVQGRATVY
>NC_011071.1|WP_004144283.1|755847_756843_-|tRNA-dihydrouridine-synthase-DusB
MQIGPYSIAPNVVLAPMAGVTDKPFRLLCKRLGAGLAASEMTISDPRFWNTRKSIHRMDHDGEPAPISVQIAGTEPQQLAEAARYNVDHGAQIIDINMGCPAKKVCNAWAGSALMRDEQLVARILEAVVNAVDVPVTLKIRTGWDCDHRNGPLIARIAEDSGIAALAVHGRTRDQHYTGQAEYATIGEIKAALRIPVIANGDIDSPQKAAFVLKQTGVDAVMIGRSAQGRPWIFREVAHYLATGEELPPPSLAEVRDILLGHLHALHAFYGEPQGVRIARKHLGWYAKDRPENAAFRAVVNRAEDPASQIALTTDYFDSLIAGEPALSSAA
>NC_011071.1|WP_012510077.1|757001_757433_-|hypothetical-protein
MDGFPWLLVAAAGSAIAALLHIGCIAFGAAWYQRFGAGSRVVRLAQAGHWWPPLMTAGITAVLVIWTLYALAAAGWHSPLPGSRQILSGIALLLLLRAGMGFGLALIRPGYNGARFWVTSSLACLGLGLAFALGTRQAWQALG
>NC_011071.1|WP_012510078.1|757514_758432_-|LysR-family-transcriptional-regulator
MLPNERLRGIEAFVATAEAGSFTAAAERLHLTSSAVGKTVARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLAAHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPRLRPQVTFSDRFIDLAEDGVDLAVRIGGPEPLPATLGSRLLGHECLRFCASPAYLQRHGLPTSGAELADHDGVLFGRADGSIGPWQVADGGQRSAPLQARARLVVGSAEAQVAAVEAGFGIAQLATWLVDDALARGSLVSILPALDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLRIDPPH
>NC_011071.1|WP_012510079.1|758527_759715_+|MFS-transporter
MSSLDCSVATGHRAARARVSVALLAVSAFVIVTTEFLIVGLLPALARDLGLGIARAGQLVTLFAFTVMLAGPPLTALLAHLDRRRLFVAILLLFAASNALAAVATLPWLLALARVLPALALPVFWGTASETAAQLAPAGQGGRAVARVYLGITAAMLFGIPLGTLAAEAIGWRGSFWLLSALSLLMAGALALWMPGTAAEPRRALGEQARVLRQPWLLGNVLLSVLVFTAMFAAYTYLADVLERLLQVPAAQVGWWLMGFGAVGLFGNALGGRWVDRAPLGATLAFCTVLALGVLASVWLAGQGGLVVIALALWGVAHTALFPLCQVRVMRAAPQAQALAGTLNVSAANAGIGLGALLGGGAIERWGLDSLGVVAAAVALLAIAAGLLLRRAEEP
>NC_011071.1|WP_012510080.1|759768_760734_-|ribokinase
MSSSVVVVGSFNVDHVWRCESLPAPGATIAGRYSTGPGGKGFNQAVAACRAGADTHFVCALGDDAGGATARELAAQDGFGLIAEASSEPTGTAGIYVDARGRNTIVIGPGANAALSTDFLQQQHALLAGAKVVLVQLESPVQTIEAALATAREAGVTTVLNTAPADAPSTIGLLKLADVITPNETEFAALLGRHVGERVDANDVAALDGASLHALCRKLVGNGTVVVTLGSVGVFVSHADENLRGDTQPYYRVGAEQVQAIDTTGAGDAFNGALAASLAQVADAPFARHVRFANQFAGRSTEKEGAAAAMPRFTPADSEAK
>NC_011071.1|WP_004144334.1|760759_762058_-|nucleoside-transporter-NupC
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGHGFVKVLSFVNEGSKFIFGSLMDVKNYGFIFAFQVLPTIIFFSALMGVMYHLNVMQGIVRVMAWSITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIAKMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPVQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGEVTGLAAQIGKPTNLSTIFGYVLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQVAGVSLSDEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS

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Crispr_ID: NC_011071_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_2

1088951-1089081

Orphan

Consensus_repeat	Method
GGTGGGTGCCGACCGTTGGTCGGCACTGA	PILER-CR
GGTGGGTGCCGACCGTTGGTCGGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_011071_2

>merge|NC_011071|2|1088951-1089081|PILER-CR,CRISPRCasFinder
GGTGGGTGCCGACCGTTGGTCGGCACAAAAGGGATTCACCCTGAACTGTCTGGGTGGGTGCCGACCGTTGGTCGGCACGGTTGATCTGTCCTTATCCGATCCGGTGGGTGCCGACCGTTGATCGGCACTGA

>NC_011071|2|1|1088951-1089081|PILER-CR
GGTGGGTGCCGACCGTTGGTCGGCACAAAAGG	GATTCACCCTGAACTGTCTGGGTGGG
TGCCGACCGTTGGTCGGCACGGTTGATCTGTC	CTTATCCGATCCGGTGGG
TGCCGACCGTTGATCGGCACTGA

>NC_011071|2|2|1088951-1089078|CRISPRCasFinder
GGTGGGTGCCGACCGTTGGTCGGCAC	AAAAGGGATTCACCCTGAACTGTCTG
GGTGGGTGCCGACCGTTGGTCGGCAC	GGTTGATCTGTCCTTATCCGATCC
GGTGGGTGCCGACCGTTGATCGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_004147177.1\|1086923_1087490_+\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NC_011071.1\|WP_012510283.1\|1095540_1096425_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_011071.1\|WP_012510278.1\|1087482_1087977_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_011071.1\|WP_012510276.1\|1084505_1085048_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|225374
NC_011071.1\|WP_012510279.1\|1090671_1090938_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510275.1\|1083724_1084432_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NC_011071.1\|WP_012510274.1\|1083181_1083631_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_011071.1\|WP_004147231.1\|1089803_1090601_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226584
NC_011071.1\|WP_012510271.1\|1080843_1081827_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NC_011071.1\|WP_012510272.1\|1081882_1082782_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NC_011071.1\|WP_012510282.1\|1094575_1094968_-\|PTS-fructose-subfamily-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NC_011071.1\|WP_004147230.1\|1089191_1089683_+\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_011071.1\|WP_012510277.1\|1085044_1086832_-\|DUF4153-domain-containing-protein	unknown	unknown	gnl\|CDD\|372672
NC_011071.1\|WP_012510280.1\|1092541_1094311_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_011071.1\|WP_012510281.1\|1094313_1094583_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|273389
NC_011071.1\|WP_004147181.1\|1087992_1088943_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_011071.1\|WP_004147235.1\|1090999_1092361_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_011071.1\|WP_012510273.1\|1082875_1083085_+\|DUF4287-domain-containing-protein	unknown	unknown	gnl\|CDD\|379478
NC_011071.1\|WP_012510284.1\|1097399_1097852_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|334031
NC_011071.1\|WP_004147299.1\|1096452_1097403_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_004147177.1\|1086923_1087490_+\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	3.07451e-85
NC_011071.1\|WP_012510283.1\|1095540_1096425_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	4.57965e-147
NC_011071.1\|WP_012510278.1\|1087482_1087977_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.93909e-51
NC_011071.1\|WP_012510276.1\|1084505_1085048_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	2.4201e-60
NC_011071.1\|WP_012510275.1\|1083724_1084432_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.19432e-40
NC_011071.1\|WP_012510274.1\|1083181_1083631_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.44494e-13
NC_011071.1\|WP_004147231.1\|1089803_1090601_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226584	COG4099, COG4099, Predicted peptidase [General function prediction only].	5.6114e-35
NC_011071.1\|WP_012510271.1\|1080843_1081827_+\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0
NC_011071.1\|WP_012510272.1\|1081882_1082782_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.30497e-104
NC_011071.1\|WP_012510282.1\|1094575_1094968_-\|PTS-fructose-subfamily-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	6.78359e-26
NC_011071.1\|WP_004147230.1\|1089191_1089683_+\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.81291e-09
NC_011071.1\|WP_012510277.1\|1085044_1086832_-\|DUF4153-domain-containing-protein	gnl\|CDD\|372672	pfam13687, DUF4153, Domain of unknown function (DUF4153). Members of this family are annotated as putative inner membrane proteins.	2.46546e-14
NC_011071.1\|WP_012510280.1\|1092541_1094311_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_011071.1\|WP_012510281.1\|1094313_1094583_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|273389	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein. [Signal transduction, PTS].	3.99651e-31
NC_011071.1\|WP_004147181.1\|1087992_1088943_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	4.99638e-164
NC_011071.1\|WP_004147235.1\|1090999_1092361_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	8.63344e-162
NC_011071.1\|WP_012510273.1\|1082875_1083085_+\|DUF4287-domain-containing-protein	gnl\|CDD\|379478	pfam14117, DUF4287, Domain of unknown function (DUF4287). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 70 and 180 amino acids in length.	1.34988e-24
NC_011071.1\|WP_012510284.1\|1097399_1097852_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	1.87107e-31
NC_011071.1\|WP_004147299.1\|1096452_1097403_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	4.82554e-140

>NC_011071.1|WP_004147181.1|1087992_1088943_+|aspartate-carbamoyltransferase-catalytic-subunit
MTAQQLDASGRLRHLLTLEGLPRETLLQLLDRAGQIRDAAVGRVGNKRQVLAGSAVCTLFFEPSTRTRSSFQLAAQRLGADVLNFDASTSSTRKGETACDTLRNLEAMGVRGFVVRHPDDGAVAALAEAAGEGTALINAGDGRSAHPTQGLLDMLTLRQAKGPDFSKMKVVIVGDVKHSRVARTDLHALRTLGVGEIRVCGPQSLLPDDETLKGCVVGDDFDAMLEGVDALMMLRLQRERMEEGLVPSLEQYHAQYGLTNERLARAGKDAAVLHPGPINRGVEVTDEVADGPQSWVLRQVANGVAVRMAVLETLLG
>NC_011071.1|WP_012510278.1|1087482_1087977_+|Holliday-junction-resolvase-RuvX
MSEPTAPAPVSAAPVIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRERFKLPVVMIDERSSSVEAARRFAVERAEGRKRRRDAAALDAVAAAVIIDRWLSSPDDAIPIP
>NC_011071.1|WP_004147177.1|1086923_1087490_+|YqgE/AlgH-family-protein
MPVTPTSLADHLLVALPSLLDATFARSVALICQHDENGAMGVLVNQPSEYTLGEVLAQMDITTGDGDLQARMVLNGGPVHPERGFVIHDDARAWDSSLIVGEGLYLTTSRDILEAMARGEGPANAVVTLGCAGWGAGQLESELSENSWLTVPADAELVFQLPLEQRWQGAASRIGVDLFRLTDYSGHV
>NC_011071.1|WP_012510277.1|1085044_1086832_-|DUF4153-domain-containing-protein
MQSSSPLTLPARSAIVLIALLQGLMLYAAQELSDAWPFRDIGWRYCWYAWVLAIPSAVALSLVDLGQRRLWLQAMLGSAVVLALAAWIGWNLNGETALESGALQFPLTLGMAVAVFVALPWWQFQLQHGHWRASYPELFERAWQNGLTLALAALFTGLTWLLLWLWAALFQLLDVTFFRDLFRQDAFIALATGSLAGFGVLIGRTQHRAIQITRQVLFAICRGLLPLLSFIAVLFVLSLPLTGLEPLWKTRSAASLLLVLSLLLVSFTNAVYQQGDDTAPYPLLLRRLVEASLLALPVYAVLALYALGLRVVQYGWTLDRFWAVLIALAVAGYALGYALAVVRRRGRWLQTLEPVNRWMCWAVLALALLGNSPLLDPVRLTLSSQLARLRADPPAITSSDVNVLRFDLGHRGVQALRELQDDPAITADANAPQVIADALARTSRWDGGTRLDKGPQDIAALQRALKLAKGSSSPPDDWWQALATRAINGESCAQSERDCLIVHRDLDGDGSAEVLLCELYNIRGPDCVLYARGKDTRWHRAGSLFGAASGQAEAINQALRDGKLTLVPPRWPMLSIGGHPAVAIDPEPESNESSP
>NC_011071.1|WP_012510276.1|1084505_1085048_-|DNA-3-methyladenine-glycosylase-I
MSGYCLIAPGHPVHDYYHANEYGFPQRDERELFERLVLEINQAGLSWETILKKREGFRAAYDGFDVDRVAAYAEQDIERLLSDAGIIRNRLKVLAAIHNAQVIQQLRASHGSFAAWLDAHHPRSKADWVKLFKKTFRFTGGEITGEFLMSLGYLPGAHAEDCPVHARLLKLSPPWLQASR
>NC_011071.1|WP_012510275.1|1083724_1084432_+|YitT-family-protein
MSLPAHGSAPCDDADGHLVTAGPLTPPPDSAGTTADEKALRHSIAEDVQGMVLATMVASLGLAIFAKGGLMIGGMAGMAFLLHYSMGWNFGLVFVLVNLPFYWVALRRMGWEFTLKTFAAVTACGVLTDLLPRWIDFSHINPLYSAIVGGALSGLGILFFIRHRASLGGIGILAVYLQRTRGWSAGKVQMSYDACLMVAAFFVLSPSKVLYSAIGAVVLSLVLMFNHRPGRYMGV
>NC_011071.1|WP_012510274.1|1083181_1083631_+|GNAT-family-N-acetyltransferase
MQVTLDAITVDNYEAVCDLDVSEAQQDFVAGNTWSLVQAAFHPGYQTRAIQADGELVGFFMWVPETPQRISIWRFMVDQRWQGRGIGRRALELALAQIRDTPGLAEIEICYNPHNPVAGAFYGSFGFVETGMDDDGEDMLAVLPVTPPK
>NC_011071.1|WP_012510273.1|1082875_1083085_+|DUF4287-domain-containing-protein
MSTEKPKGPASYFPSIEKTYGQPVTHWFGLLAKQPGLKHMELVSFLKSEHGLGHGHANALVAHHLAGKG
>NC_011071.1|WP_012510272.1|1081882_1082782_-|LysR-family-transcriptional-regulator
MPRENLNDLQAFVHVAREGSFTRAAAQLGVSQSALSHAMRGLEERLGVRLLTRTTRSVSTTEAGARLLDTLAPRLAEIEDELAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLKVELTTDYGLADIVAERYDIGIRLGERLARDMIAVPVSPPLRMRVVGAPSYFHQYVVPRHPHDLANHNCVTLRLPTHGGLMPWDFGQDGNELSVRVSGQWIFNSMGMTRAAALAGSGLAWLPEDQVQPMLDDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDALRGPMGS
>NC_011071.1|WP_012510271.1|1080843_1081827_+|aldo/keto-reductase
MQTRELGRSGLKVSALGLGCMGLSHGYGQPVERGQGIALLRAAVERGVTFFDTAEVYGPYTNEDLLGEALAPYRDRLVIATKFGFKDARVDTGLDSRPENIRAVAEASLKRLRTDHIDLFYQHRVDPNVPIEDVAGTVRDLIAEGKVGHFGLSEASAATVRRAHAVQPVAAVQSEYSLWWREPERELLPTLQELGIGFVPFSPLGRGFLTGAINADTTFDANDFRNTVPRFEVEARRANQALVDRISTIAAARGATPAQVALAWLLAQAPWIVPIPGTTKIHRLEENLGAADLQLAPEELQRIAQTLEEISIVGERYNAQRAAQAKG
>NC_011071.1|WP_004147230.1|1089191_1089683_+|transposase
MNRARLRLGRHSRIGQSYILTTVTQERRRYFDDATAAQEVMDVFRRIDAEGLTHSLAYVVMPDHIHWLVEVRAFSLDYVMQCFKSSSALRINRMLGRTGPFWQSSYHDHAIRSEESLFRHAMYIVANPLRANLASCVGEYPYAWCRWEIDGRYQAMDYPEAER
>NC_011071.1|WP_004147231.1|1089803_1090601_-|prolyl-oligopeptidase-family-serine-peptidase
MVRSLSRWLPLLAVLMMTACTSLPDSARGRFEARAVKVDGETAYYQVFIPAGVQAAAPTHLPVILFLHGSGERGSDGVRQTHAGLGPYLREHPGFPALVVFPQVPGHEEWSGHNNRVALAALDAAIAEFGADPARQYLTGMSMGGYGSWNIALDDPRRFAAIVPVCGAVLAPRAKRPTLFVEQVAQESDPYAEIAKRLQHTPIWIFHGALDDVVPPDDDRRLHAAFQSANARDVRYTEYPEGNHNAWDATYADPAMWAWLFAQKR
>NC_011071.1|WP_012510279.1|1090671_1090938_-|hypothetical-protein
MATTIENYFQPGWRDQQYTCTACEWKGSSRAMVMELDEDATEYDCPVCENPLLVVLHPDRAQVQAAAAEGNAEAQEQLDIIASFPHPE
>NC_011071.1|WP_004147235.1|1090999_1092361_-|magnesium-transporter
MAEAVRHDKTARQLRMLSDALDSGRLGPVRRLVNTLAPAEIGNLLESLPPGKREIVWGLVDPEDDGEVLVHVGDDVRESLLADMDPDEIIAAVEDLDIDDLADLVEDLPDTVIDEVLKSMDRENRERLEQVLSYPEDSAGRLMNPDVVTVRADVNVDVVLRYLRLRGELPDHTDHLFVVSRRHQYLGRVSLASLVTHEDTTPINRLIDDEQPAIDVGESDQEVARQFSDHDWISAPVVDDNNILIGRITIDDVVDIIRGQAEHQALGAAGLDEDEDLFSPVWRAMRRRLMWLSVNLCTAFLASSVVGHFEGTIDKLVALAVLMPIVAGLGGNAGTQVLALMVRGLALGQVGSSNARTLLWKEVRVALLNGVVLGSLLGLIVLAWFHSPGLSAVIAIALTCNLLFAALAGVLVPLTLKRFGFDPALASGIFLTAVTDSMGFFTFLGLATLVLLH
>NC_011071.1|WP_012510280.1|1092541_1094311_-|phosphoenolpyruvate--protein-phosphotransferase
MPRARAGQVSSGQRPVQLLAGHGAARGTAMGRARVRLPHALEVAEQRVAVHQVEAELARLHRAVDAARTEMHELRQRLQGALNQEVGEFLDLHALLLDDPELLFGLDELIRSGPYSAGYALRLQRDRLAKVFDGMDDAYLKSRMDDLDHVIGRIHAFLQPERPPAVKGLAGEILVCDNIAPSELAQLQAQGVVGIVTAAGSALSHSAILARSLHLPLIVNVPQLLSRIADGDVLIIDGADGSITSNPQADNLRDYRARLKEHAREQRELGRLRSKPSRTRDQVDIALLANAESLEDVTQAHALGAHGLGLYRTEFLFLQRNELPDEEEQFQTYRDAALGMSGRPVTIRTLDLGADKADRTGLTLSNEENPALGLRGVRLSLARPKVADTQLRAILRASAYGKLRVLVPMVSTREELLAVRRRMLKLTEQLRGEGHMVSDHVPLGAMIEVPAAALALESFIDLVDFLSIGTNDLVQYLLAADRNNEALGELYSPLHPAVLRLLQMVIETGVRHRIPVAVCGEIAGDARMTPLLLALGLTEFSLHPGTLLEVRRAIRDADLGALRARAPKLLAARDRRAIERWLALVADAS
>NC_011071.1|WP_012510281.1|1094313_1094583_-|HPr-family-phosphocarrier-protein
MLERELTVSNRLGLHARATAKLVQTLAPFRCNVTMAAKGREINAKSIMGVMLLAAGQGTPVTVRINGEDEVAAMEAVVGLFERRFDEDN
>NC_011071.1|WP_012510282.1|1094575_1094968_-|PTS-fructose-subfamily-transporter-subunit-IIA
MTCGILLVTHPGVGTALLDVATRLLRQLPLKTEAFEVPFDADLDALLPLASAALRRVDGGNGVLILTDLYGASPANLAGQLARLGTPVRRVSALSLPMLLRVMNYPEQGLDQLPATAAAGTRNGAIVDDA
>NC_011071.1|WP_012510283.1|1095540_1096425_-|RNase-adapter-RapZ
MSTAPPSAPTLIIVSGLSGSGKSVALKTFEDQDYYCSDNLPINLLPDFVRSLLANHDGSAPRRLAVGIDVRGQSNLSQLGNWRQLATDAGVEVEVLFFEASDEAVLKRYADTRRRHPLSQLGLSLPEAIARERELTAPLRREADAVIDTSTLNVHQLRRRIITEFALDHATRLSLLFESFAYKRGVPAEADFVFDARVLPNPHWDPDLRALSGREPGVRDYLEAQPDVQHYLAQLTDFLDTWLPKLGDGTRSYVTVAFGCTGGKHRSVFLAERMARHAREMGWEDVATYHREQD
>NC_011071.1|WP_004147299.1|1096452_1097403_-|HPr-kinase/phosphorylase
MNTSITARELFEQQRERLGLRWAAGKSGEKRELEAGNTVSRRPSLAGYLNAIYPNKVQILGTEELSWLDALEPRQRWETIEKIMQSHPLALVLTRNQPCPEDLRAAADESGTPLWLSPKRGHELLNHLSYHLARTLAPRVILHGVFMEIYSIGVLITGEAGSGKSELALELLSRGHRLVADDAPEFTQIAPDVLDGTCPELLQDLLEVRGLGVLNVREMFGDTAVKKNKYLRLIVHLTKPMTEPTPHGYERLTGDSGTRHVLDLDVPLITLPVMPGRNLAVLTEAATRLHILRTKGIDPAAMFIARHSNLLERRTP
>NC_011071.1|WP_012510284.1|1097399_1097852_-|PTS-sugar-transporter-subunit-IIA
MPLTDLLAAVQTQLCTATDRDSVLQAAAGLLACRQANAEQIYLNLCQREALGSTAIGHGIAIPHGRAPTLDRPRGALLRLATPVDFGGDEPVDLVFAMAVPAHYTHQHLMLLSELAELFSMPAIRDALRAAGDARALREALELTPPASAA

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Crispr_ID: NC_011071_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_3

1340869-1340960

Orphan

Consensus_repeat	Method
TTGCCGGCCAGCGGCTGGCACTACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_3

>merge|NC_011071|3|1340869-1340960|CRISPRCasFinder
TTGCCGGCCAGCGGCTGGCACTACCGACTCTGCCTGGGTCTGGTAGTTGCCAACCTTGGTTGGCATTGCCGGCCAGCGGCCGGCACTACCGA

>NC_011071|3|3|1340869-1340960|CRISPRCasFinder
TTGCCGGCCAGCGGCTGGCACTACCGA	CTCTGCCTGGGTCTGGTAGTTGCCAACCTTGGTTGGCA
TTGCCGGCCAGCGGCCGGCACTACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012510458.1\|1340997_1341882_-\|arginase-family-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510450.1\|1333237_1334425_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_011071.1\|WP_012510449.1\|1332113_1333241_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_011071.1\|WP_041864489.1\|1346545_1346944_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_011071.1\|WP_012510459.1\|1341885_1342950_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NC_011071.1\|WP_012510461.1\|1344441_1345158_-\|MtnX-like-HAD-IB-family-phosphatase	unknown	unknown	gnl\|CDD\|319826
NC_011071.1\|WP_012510464.1\|1346940_1347300_-\|EamA-family-transporter	unknown	unknown	unknown
NC_011071.1\|WP_004150098.1\|1349594_1350278_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NC_011071.1\|WP_012510462.1\|1345332_1346535_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_011071.1\|WP_012510456.1\|1340149_1340362_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NC_011071.1\|WP_012510466.1\|1348218_1349598_-\|sensor-histidine-kinase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NC_011071.1\|WP_012510457.1\|1340430_1340790_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319937
NC_011071.1\|WP_012510452.1\|1336894_1337788_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NC_011071.1\|WP_041864488.1\|1335415_1336816_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_011071.1\|WP_012510465.1\|1347301_1348138_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NC_011071.1\|WP_012510454.1\|1338691_1339360_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510453.1\|1337895_1338516_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NC_011071.1\|WP_012510460.1\|1342978_1344379_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223238
NC_011071.1\|WP_004149835.1\|1334409_1335423_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|224482
NC_011071.1\|WP_012510455.1\|1339356_1340145_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012510450.1\|1333237_1334425_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	7.97413e-32
NC_011071.1\|WP_012510449.1\|1332113_1333241_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.24228e-31
NC_011071.1\|WP_041864489.1\|1346545_1346944_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	3.34313e-06
NC_011071.1\|WP_012510459.1\|1341885_1342950_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	2.9748e-07
NC_011071.1\|WP_012510461.1\|1344441_1345158_-\|MtnX-like-HAD-IB-family-phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.19403e-35
NC_011071.1\|WP_004150098.1\|1349594_1350278_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	1.79536e-68
NC_011071.1\|WP_012510462.1\|1345332_1346535_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	6.21557e-43
NC_011071.1\|WP_012510456.1\|1340149_1340362_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	8.38618e-28
NC_011071.1\|WP_012510466.1\|1348218_1349598_-\|sensor-histidine-kinase-N-terminal-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.00636e-51
NC_011071.1\|WP_012510457.1\|1340430_1340790_-\|VOC-family-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	8.86623e-38
NC_011071.1\|WP_012510452.1\|1336894_1337788_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.55255e-147
NC_011071.1\|WP_041864488.1\|1335415_1336816_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	8.23819e-38
NC_011071.1\|WP_012510465.1\|1347301_1348138_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	6.68466e-47
NC_011071.1\|WP_012510453.1\|1337895_1338516_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.21195e-62
NC_011071.1\|WP_012510460.1\|1342978_1344379_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	5.86627e-110
NC_011071.1\|WP_004149835.1\|1334409_1335423_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	4.67037e-36
NC_011071.1\|WP_012510455.1\|1339356_1340145_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	8.21858e-129

>NC_011071.1|WP_012510457.1|1340430_1340790_-|VOC-family-protein
MSQTVIPQLRMRHADTTLPFYVQGLGFVVDWEHRFEPGFPLFAQLTRDGQTIFLTEHSGDCEVGGAVYFIVEDVDALHRAFSAAGVPIEQPPHDTEWGSREMLLRDPDGNRLRFATDAS
>NC_011071.1|WP_012510456.1|1340149_1340362_-|ParD-like-family-protein
MGIVNIDDTLHDQLRRACTVSSRSINAQANFWIRVGMLCELNPTLSFQDIVASELRAAGVQPPLLPPGQA
>NC_011071.1|WP_012510455.1|1339356_1340145_-|type-I-methionyl-aminopeptidase
MAIIKRPDEIALMAESGRLLAQVFAALDRLPLQGRSTMEINDFVERMIVDELQARPASKGQYGFPYVLNTSIDNVICHGVPSTTDVLRNGQIVNLDITLEKNGYIADSSTTYLVGEVDYAARRLVQTAYQAMWKGIAAVRPDARLGDIGHAIARHARSHGYSVVKEYCGHGIGQEMHEEPQILHYGHPNTGMVLEEGMVFTIEPMLNQGKPAIRQQPDEWPVYTRDGKLSAQFEHTVAVTRTGVRVLTLRPGETPLCAVDGA
>NC_011071.1|WP_012510454.1|1338691_1339360_+|hypothetical-protein
MKDNLQLLLSHLGRTFLFGLMMALPPALAWLDIHWLGNAVGEWSLVELTQEGFLVASVAAFVRLALRRADDRAFAVLAAALFACMLLREMDEALDLIAHGFWKYPVAVLIIGSLAWASRDWRRAMQALVRFLVSRPGTVMTIGLVLLLFYSRLIGMTSLWTGLLGDQYIRVFKNTIEETTELLGYTFILAASVGYVAQRVREPLTARKRALHEGTGMQQRPL
>NC_011071.1|WP_012510453.1|1337895_1338516_+|amino-acid-transporter
MWIAATAAGLFAGAGLIIAIGAQNAFVLRQGLQQHRVGTVVLACAGADIALILAGVGGMGALVLQWPLLLQVLRFGGAAFLLWYGLQAGLRAWRGGSALAAAEAQGGSGRQVLLTCLAFTLLNPHVYLDTVVLLGSLSTRYPGDLRWAFAAGACAASVAWFCTLGYGARLLQPVFRRPAAWRVLDAGVAAFMFCLATLLLLRPLSP
>NC_011071.1|WP_012510452.1|1336894_1337788_-|LysR-family-transcriptional-regulator-ArgP
MDLIHPQLAAFAAVLEEGSFEAAARRLSISPSALSQRIKALEDRLGQVLVVRQAPCRPTAAGEALLRRVRPMQALEAEALAELLPERGSDAARTPIPLAVNDDSLDTWLVPAIAELHQRHGYLFDLRMDDQDHTLQLLRDGSVLGAVTAESQPVKGCNVHPLGAMRYHAIASPGFARQYFSDGMQAAALARAPMLVFNRKDELQWRFVRRLTRARLQPPLHYLPSSTGFVEAAACGLGWGMAPESLVAPAVRAGRVVVLEPRRWLDVPLYWQHAAVRSSTLQHITQALRTAASSTLR
>NC_011071.1|WP_041864488.1|1335415_1336816_-|TolC-family-protein
MGVIGRRTRMHGAKAALALAACLPLAAAAQTLTDAPALDWEQARQRLEQVSDALAAADAAVRNKQDLQDATRLLRLPEITGEVRRLQFQKTLTLPLGSLAPVAEAYGIDSPLSFTERDWRTRPVVTAVLPLYTGGVIPAAQRAASAAHEQASAEREAQRQSLTVQLAQAYFGQRLAEQAVDVRRDVRDGLNRHLSDAEKLEREGFATRAQRLQATVARDKAEREYQKTVNDLATLKAALATLLRSGGEVQPVSPLFVQRVPLEPVANFERTAQARQPQIARLRAMVAQAEQGVRVQQAKLKPQIFAFGQYDFRRRDEMLTDPDWAFGIGLKYTFLSPNSRPAQISAARAQQDQAEAGLREAENQVALGVRKAWNELETARQQYVLLDSSIAQAQENLRLQELAFREGQATSLDVIDARLALGGARVERAQAAYQYDIALAQLLEVSGQMDRFEEFRRRADEVIDHE
>NC_011071.1|WP_004149835.1|1334409_1335423_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSDVLHDDATTPPAKRRLGPILIVVLLVVVVLGLWLAWRSPADQIQGMADADTINVAAKITARVAELKVREGDRVQPGQVLFLLDSPEVAAKEQQAHGALAAAQAVADKADEGARSEDIRAAEANWKRAEAGATLAEATYQRVQNLFNEGVMTRQKRDEAHAQATSSRELARAARAQYDMALAGAREQDKRAAQGQVQQAQGAVAEVNAARVEVEGRAPVAGEINKRMADPGELVPAGYPVFTLVDIDRMWVAMNLRESQMQGLKVGSKLRGSVPALGQDGEFEVYFINPAGDYATWRTTRQSSGYDVRSFEVRVRPVRRIEGFRPGMSVLFAWPQH
>NC_011071.1|WP_012510450.1|1333237_1334425_-|ABC-transporter-permease
MAPALSPGRGGFAASWRRELRSLRGNRADLLLVTLLPLLMLAVMAWMFTPSVMRDIPIAVVDLDHSSDSRLLLRMLDASPGVRIASQPADMQDARSQLRRLDVFAIVLVPRDVTRQALRGRQGTVFAYYNATYMTTGQSAARDIGDAVSAWNARLLRERIGLQVGPGKLRAAPIAVQSDILYNPARSYELFLLPLIFPAVLSLVLALAVAGSLGREIRDSTLPAWLGRTPWPAIAGKVAPYILLFSVYGALGIGYLAWLRGDGVAGSVLMLLLAQPLFYLATAAYALFFVGVTRDMGTALSAVGLSIGTALAFSSATFPVLDGPLFTRIWHQLLPLSAYIKLQTQQQFIGSPLQVSVWPLATLLLMSVVAGGIGGLRLIAFARTPEAAQPAGADA
>NC_011071.1|WP_012510449.1|1332113_1333241_-|ABC-transporter-permease
MSALWRSLRQTLMAVLCDRYAIVVMVGAVILYSFFYPAAYRHQVAGNLPVLVVDEDHSATSRELLRKLDALRVARVVGQPADIDSARQQLEAGHAEGIVLIPANLERDILRGHPAKLVLLGNGAYLGRASWVLGSVADALGAFGREAVVGQAAFMGAPQAPPVTLVQRPLYNTQEGYGSAIVPGVAELIVQQTLLMGIGVLLGGRRLALGRRLRFDLPTLAGMALGFGLIGLFGLFYYAGFTAWVQDYPRGGNPLGQLLGGTLFIAATVAFGLFVGSFFRTRERAFQYIIATSIPLFFLANLSWPAVMTPQPLVWLAQLLPTTSGINLMVRLNQMDASLAEVSHELITLSALLLLYGALAAWRLLAKKGTEGIKS
>NC_011071.1|WP_012510458.1|1340997_1341882_-|arginase-family-protein
MPLRSPLILDLDSGVLPLPQAQTLALPQWHDPLRFACSNATLERFAAEVLAPLPAQLGTVMLGSGDFHHLSLPLLQRMRTQAPFQLVVLDNHPDNMRFPFGMHCGSWVNAASKLPQISHIHVLGITSSDIGLGHAWENHWRPLMSGRLTYWCMDVDVGWGHRLGMGHAFRRFEHPEALVAAFAAEQAKSPQPTYLSIDKDVFTEDVARSNWDQGRFQLEHALVVIEALRAGGLAGSDITGEVSLANYQSRFKRWLSSLDGQPDVSAEDLPVWQTRHQQVNQELLAAIAAVPTAC
>NC_011071.1|WP_012510459.1|1341885_1342950_-|GNAT-family-N-acetyltransferase
MEMTSRASSTALEPAALLEGFLAHPPLGFEAGRLPSGLPTFRAPLDLTTTMDDGLRGKLLGLPLSRLWRPWITWKTRFVGATSTEYTPLPAHVAPEALAEDVTRHAIGDTRLLVVKDLAIDSPLLDDAANAHSGAFLQALLARGFVELEGMPLAWVAIDFDSIDGYLGRLSSSRRKNIRRKLRSRDDLQIDCIATGDPALADPQLQAELYALYLGVYAQSAVHFDQLDLSYFQHLLADSLGQGRLFLYRHQGQLIGWNLCYVHAGKLVDKYIGLAYPQSREHNLYAVSWMHNLEYALQHGLSHYVAGWTDSRIKAELGASFTSTRHAIHARSPLLRAALRRLAPYLQGEPDGGG
>NC_011071.1|WP_012510460.1|1342978_1344379_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MNIFDKNADAAASDAQLLADEARYSSFGDTVHYVDPPKIFQRGEGSYMFDGAGVPYLDLQMWYSACNFGYSNKRLNDALKDQIDTLPQVASQYLHPTRVQLAKTIAVDMHEKFGLDGRVHFNVGGAQAIEDSLKIVRNARGGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERAMFIPFPYPFRRPKGMTPEEYSDHCVWQFERLFESEYNGVWDPKVGQAEYAAFYVEPIQGTGGYVIPPRNFFTGLKRVLDKYGILMVVDEIQMGFWRTGKLWSIEHFGVTPDVLVFGKALTNGLNPLSGLWAREELINPTVFPPGSTHSTFNSNPLGTRLGLEVLKLGKEMDYERTVPEKGAYFLDGLRGLQKRHPEIGDVDGLGLALRAEICQTDGYTPNKELLDRMVDIGLAGDLLHDGKRMGLVLDVGGWYKNVITFAPSLDISYEEIDLAITLLDQALTKAKG
>NC_011071.1|WP_012510461.1|1344441_1345158_-|MtnX-like-HAD-IB-family-phosphatase
MRWSILCDFDGTISLEDVIDSLLEKYGQPGWQELEDQWKAGKIGSRECMQGQVRLLNLDPATLDAHLDQVQIDPGFAAFVSRAEQLGVPLRIVSDGLDYAIHRILANHGLSRLPVVANHLRWCDDHWELESPYQAEGCRSGTCKCTCAAQARANEAPRVLMIGDGSSDFCVSEDADFVFAKRRLITHCTHAGIEHAAIDTFHDAIALLPRLLDGSLLQPRRIDASPQPAVLPLLLATA
>NC_011071.1|WP_012510462.1|1345332_1346535_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MSLFARELPPTAGLPMQASDFLPGGGDLREILASQLGTPPLQLTCSGTHALLIALRTLRRRAPRRDTVIMPAYTCPLVPIAVHSLGLRVQLCDTRRGHFDFDPGQLKRLADARTLAILPTHLGGRIADVELACEVARNAGAWVIEDAAQALGARVGNSSVGLRGDIGFFSLAAGKGLSLHEGGLLVSRDDALRAALAEHAAEQTRFNLRWELLRSVQLLGLAACYRPSLLSLVYGNPLRRALQRGDLEEAVGDIFALDIPQHRVSRWRQNIGSHAARRLPAFLQAGRLRALQLRVQLAQLPAVEVVDGLAGTGGTWPMLMLLLPSQQARDGVLKDLWPRGLGVSRMFIHALPDYTYLRGIVPDDPTPNARDFAARMLTLGNSAWQTREDTAEILQALARA
>NC_011071.1|WP_041864489.1|1346545_1346944_-|DMT-family-transporter
MRRLYVIGFPLLMAFDTLAQLCFKYAGDAALPVEANTAWLLRVLSQPWVYGAILGYVGAFFTWMSLLRHAPIGPAFAASHLEVISVLLLSAWLLNEPLTLHHLLGAVLIVAGIVCLGRAEADDPHSPAEATT
>NC_011071.1|WP_012510464.1|1346940_1347300_-|EamA-family-transporter
MGSLATLLWLVNVVLDTGGQLAFKAAASDPNEAEGLQRWKHMLSRPWLWLGIACYVLEFVAWIAFLSLVPLSKGVLLGSINIVALMIAGRILFREKLTPLRVTGMLLVTAGVAVVGAGS
>NC_011071.1|WP_012510465.1|1347301_1348138_-|alpha/beta-fold-hydrolase
MTETHDFFLPGGPQGVLLVHGLTGTPAEMRMLGKGLNNAGFTVHGVQLPGHCGSVDDLLATTWEQWYQGVEDAAAALRGKVDQLFVGGLSMGAVLSLALAARRPEWVSGVGVYGATFRYDGWNIPAVARFSFLLPWFKRFNIGRDRMFMEEPPYGLRDERLRAQVSAAMLSGDSAAAGLPGNPWHALAEMRALSNWTRRHLHQVTAPCLVMHAREDDVASMGNAELVMSRVSGPKELVVLEDSYHMITIDRERRDVIRRSARFFSEIGERSGILKAVA
>NC_011071.1|WP_012510466.1|1348218_1349598_-|sensor-histidine-kinase-N-terminal-domain-containing-protein
MISGPPSLRRRLLAFLALPMLGLLIFNTVLAYYVALDYSNRIHDRNLIDDTHSFAQMLSTMPVTSDLSPQARFLIEYDPDGHRYFNVDSSRKGTLSGNADFSPYAPSQDCTGVHPALYDGTLNGQQVRMATVCTQAMNDPQDQLAVTVAESMADRRQRAREILMIIIPLMTMLALGTAALVWFGVTYGLRILTPLTTRLAQRRGELAPISDADVPEEIQPLISTIDGLFARQAEMITLQNRFIADAAHQLRSPLAGMALHVDQALAHGDPDTVREALQHIRRLNQRTARVSTQLLALSRAQTVPETVEALDLGTLLPQWVGTRVPEAIRDGIDLGYRGSSQPLRVLGNGALLQEALDNLIDNALRYAGRGATVTVGVQALDDNDVELYVEDNGPGVPEDVMPRLGERFFRAPGTTASGTGLGLAIAHEAVEHFGGRLGFLNRAGGGLKVTITLPLLKAP
>NC_011071.1|WP_004150098.1|1349594_1350278_-|response-regulator
MRVLIAEDDPDIASGLCASLRRQGHVVDHVDNGAHADAALGSTQYALLVLDLGLPQLDGRDVLQRLRQRGDGLAVLVVTARDGLAERVRVLDLGADDYLVKPFALDEFEARVRAQLRRVTSNGNPDLRIGRLRLDLAGHRVWIDEQSLELTAREFGLLSALAVRAERIVSRAQLVEALCDWGQDLTDNGLDIALHRLRRKLQPGGIGIRTVRGLGYMLEDAQDDSTP

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Crispr_ID: NC_011071_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_4

2168349-2168423

Orphan

Consensus_repeat	Method
ACCTTGGTTGGCACGCCTTTTGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_4

>merge|NC_011071|4|2168349-2168423|CRISPRCasFinder
ACCTTGGTTGGCACGCCTTTTGGCGCAGCCTATTGCCCCGGTAGGTGCCCACCTTGGTTGGCACGCTTTTTGGCG

>NC_011071|4|4|2168349-2168423|CRISPRCasFinder
ACCTTGGTTGGCACGCCTTTTGGCG	CAGCCTATTGCCCCGGTAGGTGCCC
ACCTTGGTTGGCACGCTTTTTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_006366498.1\|2160623_2161097_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012511002.1\|2171343_2172315_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_011071.1\|WP_041864515.1\|2179426_2179798_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NC_011071.1\|WP_006366657.1\|2162567_2164853_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_011071.1\|WP_005409596.1\|2165884_2166103_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_011071.1\|WP_006366596.1\|2161209_2161536_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_011071.1\|WP_012510999.1\|2166189_2166930_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_011071.1\|WP_012511003.1\|2172547_2174908_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NC_011071.1\|WP_012510998.1\|2164928_2165312_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012510996.1\|2160160_2160622_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NC_011071.1\|WP_012511008.1\|2179871_2180246_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006366667.1\|2168448_2169573_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NC_011071.1\|WP_012511004.1\|2174947_2176891_+\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NC_011071.1\|WP_012511000.1\|2167002_2168271_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012511009.1\|2180528_2181557_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NC_011071.1\|WP_012511005.1\|2177002_2177641_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
NC_011071.1\|WP_012511006.1\|2177875_2179237_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NC_011071.1\|WP_006366661.1\|2165440_2165713_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_157628461.1\|2169750_2171262_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_011071.1\|WP_012510997.1\|2161616_2162429_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012511002.1\|2171343_2172315_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	1.88519e-151
NC_011071.1\|WP_041864515.1\|2179426_2179798_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	5.5144e-30
NC_011071.1\|WP_006366657.1\|2162567_2164853_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_011071.1\|WP_012510997.1\|2161616_2162429_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	1.29165e-76
NC_011071.1\|WP_006366596.1\|2161209_2161536_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	8.29365e-43
NC_011071.1\|WP_012510999.1\|2166189_2166930_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	6.56569e-131
NC_011071.1\|WP_012511003.1\|2172547_2174908_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NC_011071.1\|WP_012510996.1\|2160160_2160622_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.37277e-71
NC_011071.1\|WP_006366667.1\|2168448_2169573_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NC_011071.1\|WP_012511004.1\|2174947_2176891_+\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	1.01002e-27
NC_011071.1\|WP_005409596.1\|2165884_2166103_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	7.64978e-48
NC_011071.1\|WP_012511009.1\|2180528_2181557_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	4.12851e-56
NC_011071.1\|WP_012511005.1\|2177002_2177641_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	1.81078e-72
NC_011071.1\|WP_012511006.1\|2177875_2179237_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_011071.1\|WP_157628461.1\|2169750_2171262_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	3.57577e-15

>NC_011071.1|WP_012511000.1|2167002_2168271_+|hypothetical-protein
MSDAITAILDVHDTPRTRNDSQSMLLMLATEQPRQLGVLMLQALARRSPGSAFLDMALDLLPDDAVPAVVAEAWRRYRDGERGELLASVMEFASYQAPQLLQDDWEALLAIASEDELQLASQVWQGLPSATAAQWAQILAEADDDREMARARALLLAAQPETYAIARGYVVDWGRLDAEVWAHWAGVADGPQPRRLHGERPLHLRFGREQHRAQQADEPSWRKRIWRLHPTWNGGQVHHAGRMGGPLEALCGGCHAPLQRLLQTDAAALQPGASGEVTLGLCLDCCGWEEPPVRFYRHDAAGQPGCHPSQYLEVPNTPTDSGDLMQAEVGLVAMDSARWQQQDWGQSNHRQNLSRVGGAPSWVQSAWYPACIDCGEEMPFVMQLDSTLPTTGEGTLLWGSGGMLYTFWCAKCRVSGHFWQCT
>NC_011071.1|WP_012510999.1|2166189_2166930_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTRQLPWRLADTPDAPFPPAETALRQPDGLLAVGGDLHPVRLLNAYAGGIFPWFSEGEPILWWSPDPRMVFRTDGVHLSSRFRRQLRSSTWEISVDTAFGRVMRACAAAPRPGQDGTWISPAMVEAYSQLHDLGFAHSFEVWDRQTLVGGIYGVAIGAMFFGESMFSGASGGSKIALAALATTLRDWGWQLIDAQVENPHLLRMGAEHLPRAEFLDHVRQAVHQDGREGPWTQAVGRLPARHLAGG
>NC_011071.1|WP_005409596.1|2165884_2166103_-|translation-initiation-factor-IF-1
MSKDDSIEFEGTVSETLPNTTFRVRLENGHEIIAHISGRMRKNYIRILTGDRVKVEMTPYDLTKGRITYRMK
>NC_011071.1|WP_006366661.1|2165440_2165713_-|hypothetical-protein
MTYLIVLDPQSVTSRCYASKGPDGTWFGQPCLVCTSMDASHPLYLAVQREIPHMGGTLKQRLHIPHEAVAFVIEDGGDQGRQQGFRSIAA
>NC_011071.1|WP_012510998.1|2164928_2165312_-|hypothetical-protein
MNALLPHVLLSAVLLVSPPLSAPAAEPAKPSTTAECIALSTNRDIRPSSTEREVLLRDGNNHYRVHLQKRCLGAAASASYVFFTPNTPEQICGDARSTLQTDSNHCAVTRIERVDAATFKRLAQQGR
>NC_011071.1|WP_006366657.1|2162567_2164853_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADAERLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGEEGEQPSSSSEGESRIEGGEGEPKGDALTEFASNLNEQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIVEGSVPEVLSDAVIYSLDLGALVAGTKYRGDFEKRLKGVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEGQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIDTLASAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGRVSIDVRDDELVVETQAEPERLLPVTVE
>NC_011071.1|WP_012510997.1|2161616_2162429_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGAAIETPHAQLWPVLTIAGQPAMLKISSETEEQNSHRLLRWWDGDGAARLLAHEGPAILIERAGGDSLRQRSIEGDDDTCTTILCQVLQRLHRPRSAPPAELVCLRTWFADLLQPRAALPSLLEQCGSLAAALLQEEQEIRPLHGDLHHDNVLDFGARGWLAIDPKRLIGDRAFDYTTLFSNPDLCGPDIHVATQPERFAARVEQVTALAGIERHRLLRWIAASAGLSAVWFRDDGDTADIDDAVARMALEALAEG
>NC_011071.1|WP_006366596.1|2161209_2161536_+|ATP-dependent-Clp-protease-adapter-ClpS
MPRESSPDSHHEHGVAVEPARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFTMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NC_011071.1|WP_006366498.1|2160623_2161097_-|hypothetical-protein
MKRTLLPALLVALAAAGSAAAAPEGDKAVARHLDKLGYNYEVDEDGDYRLVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NC_011071.1|WP_012510996.1|2160160_2160622_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRAVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTTFLRFCYAARPVSHDPAQPLDTGIDRALWLAPDELQAAGERLRSPLVWQVVADYLGGQRHPLSLVREVA
>NC_011071.1|WP_006366667.1|2168448_2169573_-|N-acetyltransferase
MPSPRFHDSLQSIAASNWDALHDGRNPFISHAFLSGLEQHGCLREDWGWQPRHFTLWEGDTLVGAIPGYLKTNSHGEFVFDHAWANAYARHGRDYYPKWLGAVPYSPVTGPRLLARHDPERATLLSALREALPTLGVSSAHINFHTALDEALFGDDWLLREDVQFQWQNPGDWTSFEQFLGAMDHKHRKNIRQERAKVTRQGITFRVVHGDEASRADLQAMYRFYLQTFLEYGNAPALTEAFLRHLAISLGRGLVLFLAEQDGEPIAGALCLRGGDTLYGRYWGGATLPGLHFEACYYQGIEYCLREGLARFEPGAQGEHKLARGFLPTLVRSRHWMADADFAEALQDWCRQERCDVRRYQQELQGHGPFRAGT
>NC_011071.1|WP_157628461.1|2169750_2171262_+|N-acetylmuramoyl-L-alanine-amidase
MNALRCSAFALIIAGLSAGPAAIAQPAHAMIETDPALDLLLTREAQRMLDAHQFRTSRSTQVVVNASVDLERQRLIIRFGPGMLPAEDDHSLEEIEQYIRSSLEFYALRSGAGEVQSEVLYEGKPYWEHFPIMPAAPAQSSDASTVNSVLVSASHGLVRVHPGLEWEFQRPARNGVQEDLITVGYAEELQQLMEERGGRVVHRARRNQGDLHPESKRAWSEMSSRYHLRDLLPDRPDIWNHFANSTATDREVSDDIRARPYYANHLGAAGLFSIHTNADASGAARGTRVYYHPRKPSDQRLADMVLCYMRELITAQEEYADFPVAAAGAAASHGENGFAQMPSVVVEVAFHTNPTDAAALLDPAFRTASMKGVEKGYRLFREGEGCVPLKVEPIQSIELSAGNSRRVDIVFEGHPRYPIDLVTTNVGCPPGWTCTDGKVHIAAPDEKPSQIIMRCENAGSAPLFWNTQVVDADGVKSPPVRHRVQCIRRPGGLSVAATGLAGS
>NC_011071.1|WP_012511002.1|2171343_2172315_-|thioredoxin-disulfide-reductase
MSTSLPSRHQRLVILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFETEVIFDHIHTADVSQRPFKLIGDSHEYTCDALIIATGATAKYLGIPTEDELKGRGVSACATCDGFFYRDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFAKVAAGKIETVWHHQVEEVLGNEAGVTGVRVKSTLDGTTRDIDAHGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLGGNATQTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERYLDAQGKAS
>NC_011071.1|WP_012511003.1|2172547_2174908_+|DNA-translocase-FtsK
MAKQVPERSKSDDSKASRRTAAAATTDNPRRQRLWRDLGLIAIAPALLYLAASLFTYSATDPGWSHTGSVVAPVHNLGGRAGAWIADVLLQLFGYIAFLLPVVLGALAWIAMFGLKRESKGENDLDPALRLVGLVGFLIAGTGFLHVRLFSGDVAHAGGILGKLVGNSLTVGFGALGANLFVLVLLLASITLATGLSWFVVMEKIGRGVMSLAPLLERKKEEVTEWKQTRVMREERQEVRKADAEVRAKREPVKIEPRPEPVIEKSDRAKRDTQIPMFRGVNGDGSDLPPLALLDDPKPQPVGYDKETLDALSRQIEFKLKDFRIDAQVVGANPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIYLSELLRSKEYDKSASVLTLALGKDIAGRSTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLFKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKEAQDAGQPLMDPLFKPNPELGEAPRPLETLPFVVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAETLLGHGDMLYLPPGTAMPERVHGAFVSDEEVHRVVEHLKAMGPADYVDGVLDEVQTMGDGVVVGATGLPENSSAGDESDPLYDEALRVVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSSPEHNGDRTVLAPPPPK
>NC_011071.1|WP_012511004.1|2174947_2176891_+|DUF3857-domain-containing-protein
MLHPVPSALALALAAFLAAGPALAETATSAPATAPPSTSGDTEASNNFSIVRYRADYQVRPDAGNVQTETYEVLLKTKASVEQFSQVRLSYSEKMETLEVLGAYTITADGQRRDVPADRIYTQESYSSASAAMYADRKVRVIVFPNLAPGTRLYYQVRRTQATPYFPGYFGLWETFNVFTEYEDAEVTLSAPANLPMFVDSRGVQGSDRPTVKNGQAQWRWRYQRREAMPAQNWSAAGWEFGPNIMASTYRDWSQMGRAYQLKAGPAAQVTPELQALADQITTGISDRREQADALYRWVAQNIRYVAVYLGNGGLEPNSAQSVLDNHYGDCKDHVTILEALLAAKGIASSPVLIGAGGGPTLPKIPVLGRFNHAITYIPEFDLYLDSTTAWARFGQLPEGDLGAPVMRTRDASLARTPANTPQRNATSMEVRFTFDANGNLRGETIPKLGENAEIGMRAQFSQLNAQNRARAEEQIMAASGFDGRGQLQIQGVPVDLTRPFGYRMAFQAEDYADFSVAGGMAVPDPPGGESVRGLYATASAPANEAPFYCNASLREETYRLQFPANAPIIAIPASQRFTNAAGEYRVDWSREGQDVIVHHRLQQNAVRGPEALCQPQDYPAFRALYREVRRGFRGQVLYGRLPAAAD
>NC_011071.1|WP_012511005.1|2177002_2177641_+|outer-membrane-lipoprotein-chaperone-LolA
MNFRLRRFLATTTLAVACAAAGSAWAGARDDLKTFTSGLKGLDGQFSQQVFDSRGKVKESTSGRVALSAPRLFRWEYVRPHEQLIVADGKKVWMYEPDLEQATVREQGKEEQNSPLTALINPALLEQQYDLSEEAAQRDGLQWLSLSPKRDTEASFQYAALGFNAQGLAKMEITDAVGQRTVISFSGWKRNPGFAAGTFSFTPPKGTDVIGN
>NC_011071.1|WP_012511006.1|2177875_2179237_+|replication-associated-recombination-protein-A
MARHRSTSFPGPDLLSVDREHMRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAEYSDAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDRERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEGGRITPQTLTQVLADRTRRFDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRESGTEEVPLHLRNAPTKLMKELGYGAEYQYDHDAEGGIALDQTGFPDAMGERVYYSPVPRGLEIKLKEKLDRLRAEREAARAAKGR
>NC_011071.1|WP_041864515.1|2179426_2179798_+|DUF805-domain-containing-protein
MQEMILPLKRYAQFDGRANRREYWMFQLFLLIVSAVLMVPLIAGLVMQSDGLGIASIILFVVFWLATFLPVIAVTVRRLHDCNQSGWMYLLAFIPFGGLVIFVFALLPGTPQENAYGPVPTGP
>NC_011071.1|WP_012511008.1|2179871_2180246_-|hypothetical-protein
MKHTTLIALSLGLLAPLAAHAAQDLPTLYQAYEEAGYSTLSMEQLNQTVTFTAVALGVSSNLQGEPLIEAGDDQGNVLARLTTDDAQQAAKLSALEEGTTFTASCTLQFSSGSDYLSFGDCTLK
>NC_011071.1|WP_012511009.1|2180528_2181557_+|alpha/beta-hydrolase
MKHFVLPSRRGPLARGLAALMMGLLLATPYAHAQQRNPLQKIGHTVLDEPAASYRFEHFVVDSPDQQRRWRVNVAIPAKAGKAPLPVLYALDGNAVAMVLDQPLLAELAARKAPPVLVLIGYDNDLRIDSKARTRDYTAWIDRADDESGSTQAVGGGAAAFLDVIERRIKPEVERRARIDAQQQALWGHSLGGLFVLNALYTRPAAFQSYLAASPSLWWSQGAALGDPEQQFVQNAHGQPAKLWLMLGGAERVGDRGKRDMNNPRVVAHLRRIGGATPDAAMQLSERLGKLPGMRVQYREFPGLGHGPMLPASFHAALHELYGVTDRSAGDGAPNGGDNAAE

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Crispr_ID: NC_011071_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_5

2384511-2384618

Orphan

Consensus_repeat	Method
GCGCCAACCAAGGTTGGCGACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_5

>merge|NC_011071|5|2384511-2384618|CRISPRCasFinder
GCGCCAACCAAGGTTGGCGACTACCGGGCCTGCGCGGCGCTGCTTTGGTAGCTGCCCACCTTGGTGGGCACCGATGGAAGCCAGCGCCAACCAAGGTTGGCGACTACC

>NC_011071|5|5|2384511-2384618|CRISPRCasFinder
GCGCCAACCAAGGTTGGCGACTACC	GGGCCTGCGCGGCGCTGCTTTGGTAGCTGCCCACCTTGGTGGGCACCGATGGAAGCCA
GCGCCAACCAAGGTTGGCGACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012511171.1\|2379035_2379872_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NC_011071.1\|WP_079993542.1\|2375003_2375783_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011071.1\|WP_012511173.1\|2382297_2382597_+\|DUF3649-domain-containing-protein	unknown	unknown	unknown
NC_011071.1\|WP_041864655.1\|2374530_2375007_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012511172.1\|2380067_2382245_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_011071.1\|WP_012511174.1\|2382593_2384204_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NC_011071.1\|WP_012511182.1\|2392910_2393858_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NC_011071.1\|WP_041864525.1\|2386670_2388917_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_011071.1\|WP_041864657.1\|2392130_2392796_-\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|237542
NC_011071.1\|WP_006369764.1\|2394756_2395056_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012511183.1\|2394163_2394463_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239300
NC_011071.1\|WP_012511177.1\|2385816_2386431_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_011071.1\|WP_012511168.1\|2375786_2376863_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_011071.1\|WP_012511169.1\|2377063_2377990_+\|membrane-protein	unknown	unknown	gnl\|CDD\|372703
NC_011071.1\|WP_012511185.1\|2397909_2398647_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_011071.1\|WP_012511184.1\|2395118_2397878_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|236705
NC_011071.1\|WP_012511170.1\|2378250_2378865_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172294
NC_011071.1\|WP_012511179.1\|2388984_2391669_-\|protein-kinase/lanthionine-synthetase-C-family-protein	unknown	unknown	gnl\|CDD\|271199
NC_011071.1\|WP_012511175.1\|2384200_2384479_+\|DUF3325-family-protein	unknown	unknown	gnl\|CDD\|371735
NC_011071.1\|WP_041864656.1\|2384650_2385739_-\|YcaQ-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|225755

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012511171.1\|2379035_2379872_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	9.92021e-49
NC_011071.1\|WP_079993542.1\|2375003_2375783_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.88909e-69
NC_011071.1\|WP_012511172.1\|2380067_2382245_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.84418e-94
NC_011071.1\|WP_012511174.1\|2382593_2384204_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	4.44322e-61
NC_011071.1\|WP_012511182.1\|2392910_2393858_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	4.42894e-134
NC_011071.1\|WP_041864525.1\|2386670_2388917_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.93942e-105
NC_011071.1\|WP_041864657.1\|2392130_2392796_-\|conjugal-transfer-protein	gnl\|CDD\|237542	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional.	1.14676e-77
NC_011071.1\|WP_012511183.1\|2394163_2394463_+\|hypothetical-protein	gnl\|CDD\|239300	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.	0.00158925
NC_011071.1\|WP_012511177.1\|2385816_2386431_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.000796156
NC_011071.1\|WP_012511168.1\|2375786_2376863_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.25918e-49
NC_011071.1\|WP_012511169.1\|2377063_2377990_+\|membrane-protein	gnl\|CDD\|372703	pfam13748, ABC_membrane_3, ABC transporter transmembrane region. This family represents a unit of six transmembrane helices.	6.54509e-90
NC_011071.1\|WP_012511185.1\|2397909_2398647_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	5.99515e-56
NC_011071.1\|WP_012511184.1\|2395118_2397878_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|236705	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA.	0
NC_011071.1\|WP_012511170.1\|2378250_2378865_-\|hypothetical-protein	gnl\|CDD\|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	0.00477349
NC_011071.1\|WP_012511179.1\|2388984_2391669_-\|protein-kinase/lanthionine-synthetase-C-family-protein	gnl\|CDD\|271199	cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain associated with serine/threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.	6.67839e-88
NC_011071.1\|WP_012511175.1\|2384200_2384479_+\|DUF3325-family-protein	gnl\|CDD\|371735	pfam11804, DUF3325, Protein of unknown function (DUF3325). This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.	3.37212e-09
NC_011071.1\|WP_041864656.1\|2384650_2385739_-\|YcaQ-family-DNA-glycosylase	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	1.40343e-58

>NC_011071.1|WP_012511175.1|2384200_2384479_+|DUF3325-family-protein
MIHVILFALSLAAFACLALAMERHQRDVLRRVLSAQATEKLRAVGWALLVFSAVFAMRGLGVGSGLAALSGHTSVAAGVVVVAMVAQGRRDR
>NC_011071.1|WP_012511174.1|2382593_2384204_+|PepSY-domain-containing-protein
MSKVDRTPKPRGIRQTMSDLHIWVGLLAGWILYAMFLTGTASYFRDELSRYTRPEIATPSVLPDAAVVAQRTVTAIMADTPAASQINLSLPSTRMPWVSAMWASPGGRGRHGFDSGLFDASTGAPLQARDTGGGDFFYAFHFNLHYMPAMWGRWIVGLCAMFMLVAIVSGVITHKKIFADFFTFRWGKGQRSWLDGHAALSVLGLPFHFMITWSGLVMLAVLYMPWGLAKLPDKRQQAEVVSEMRLFLPPQKAAGQPAPLTDVGALVQQAEQRWGTGSVGSVQVQNPGDQNARVAVVRAQSSRVSTTPNYLLFDGSGGQLLQVKEHSGVAADTQGVLYGLHLGRFADAALRWLYFIVSLAGTAMVGTGLVLWTVKRRAQLPDPQRPYFGFRLVERLNIATVAGLSVAMTAYLWANRLLPTAMDGRAAWEVHVFFLVWAGMFVHATLRTPKRAWIEQFLLAALLLALLPVLTAMTTPHPLWRTLAAGDWAFAGTDLTLLTLAALHTLLAWRTWRHAPKVKRTRPSAASRNAVSEASA
>NC_011071.1|WP_012511173.1|2382297_2382597_+|DUF3649-domain-containing-protein
MSVSRTTAVLAWLPLVSRILAALFGGYVLAALCSIAALALPIDGRQAVFTGMLASFLLYAGAVVWVFAVRSAWRAWLGLLIAALPLWLIAQTVGNGGGA
>NC_011071.1|WP_012511172.1|2380067_2382245_+|TonB-dependent-siderophore-receptor
MSLPLRTLPLPRRSALSLAARAALLPTLLIAIAAHANDAPDGARQLPTVNVRADKTTPTDAYAGGQVARGSRVGLLGELDFMDTPFNTTRYTADFIDNIQAPDLVRVIALTDPSVYNSGSSGGITDYFNIRGFGVASSDIGFGGLYGLIPYYRVTPELAESIEVLKGPSALLNGMPPGGSVGGAVNVVPKRAGDTPLTRFTASYGSDAQWGGHLDVGRRFGADKQFGVRLNAVHRDGDTATDHQQHKTQLASLGLDWRGERSQVSLDLFSSRDHVDGLNRGVSLAPGLAVPRPPKASTLFAPDWTFSTVKDQAAALRWSFDINDYLQAHASYGHGHTDFDSIASATTLITNTAGDFRNNFAHQRFIYSKDTVEAGLSARFRTGAVDHALAISAAWYQHDQKFGFKRNLLARDWVTNIYNPQWGPAIDRSFSDASLPKTAEVRTTSFGIADTLSFIDDRVQLTLGIRHQTVLSDTFDGGTGKRTARYDASANTPAGALLFKASDRLSLYANYIEGLSQGSTAPATAANAGDVFPPFKTRQREAGAKFDFGRLASALSVYEIEKPSSYTDPTTNVFSFGGQQRNRGVEWTVFGQATEQLRLLGGIGWLQPKLTRTQGGINEGRLATATPQWQGKLGVEWDVPTVAGLTLTGNAVSLSKGYITADNSQWVAGRTVFDLGARYATQAAGHPLVLRATVQNVTNKAYWAGSLGSGLGTPRTALLSATVDF
>NC_011071.1|WP_012511171.1|2379035_2379872_+|siderophore-interacting-protein
MSASPTSITPAGPLRGADHDRGLQALQVQVVAVAQPCASLLRLVVQLPEHAELAPWQRANTAVRIQLGATFGDVSRIYTVRSLDPNTRQFTLDVVLHEAPGPMLAWVRALRPGDAFDLTGPRPHLQVPQREGTCALLFADPSAIPALFALLQQWPADLRAEAWIASDDAFPVDELPAIEGVRVLRLATGDVPLLQQARQLRPEPGSTVWAAGEREEMRALRRHFIETVGLPRSDVAVAGYWKRGETTTETDQRRRRNYERVLARGGGLQDLDDLADDI
>NC_011071.1|WP_012511170.1|2378250_2378865_-|hypothetical-protein
MAAPKKTAARGRPPTITRERIADAGIAMTLPGLSFVGVAAALGVSHIALYKHVANLAALRELVAEAIFERWQAPALDAAGRRSIEEDLRAFQRSLRTLVDGNPGLAPFLVSHGAKTPEMLARIQRHHAEFSRVHDLPLEQAAWLLSTVAYHAVALADTVYSRHAVVDTTRRPLDRKAQEAEFDRSMEALIIGALAMCGRTAASG
>NC_011071.1|WP_012511169.1|2377063_2377990_+|membrane-protein
MKHPHDPAAAAGSIGQQNAAATLKAILRTYPWQLTGTFSLVAMENALLLAYPLFAGFAVDAIIRGDIGHAISYAGVVLLFWLVGAARRAVDTRTFTRIYADLAVNVVQAQRRLGQATSTSAARVVLAREFVDFFEKHVPIIATALVSMFGAAAMLLAIEPLVGAASLVALLGALLLLPSFARRNEQLHGRLNNRLEHEIRLVDRVSPSVLRRHYTTLSRLRILLSDREAGAFVVVGAAAAVLFALTIGRLATTDGVTPGHVYAVMTYLWTFVGSLDDAPSMVDQLARLKDIGRRVSPGMDDTEHKDAA
>NC_011071.1|WP_012511168.1|2375786_2376863_+|HAMP-domain-containing-histidine-kinase
MNPKGKSIGRQITLSITVASLCSTVLSISGFYLFYYLMEVFYPRWYDEPETIMPSGLEWLWIGLTASVVVIFATLVASRLTRRIITPLNSVAESLRRVASGDLEARARGGDTSMTEAATLVSDFNSMAERLNRMSENRVFWNAAIAHELRTPMTILRGRLQGIAEGVFEPGPEQFNSMLTQLEGLTRIIEDLRVVSLAESGHLDLRLQRSDVSVQVAAVVEAMSEALTESGFSVTVDARPSLADCDPARIRQAVLALLENARRHAIPCPLRVAVTLAEGHCTVAVEDGGPGVPDELRDSIFEAFQRTDVSRSRQSGGSGLGLAVVRAIAVAHHGTAQCRATERGGSSFEIRWPVHARR
>NC_011071.1|WP_079993542.1|2375003_2375783_+|response-regulator-transcription-factor
MTSPLTSPSPSPAHFPKPHHAMKPDTRMRQAPLVLIAEDEGEIADILGAYLARSGLRSVRAVDGEAALASHRQLRPDLVLLDVQMPRMDGWQVLSELRRRGNTPVIMLTALDQDVDKLTGLRVGADDYVAKPFNPAEIVARIQAVLRRSAREPSDAPGGVIRQGPFEIDLRSHEVTVRTDEQLHALTFTLTEFRLLVHMARAPRQVHSRLDLLHNCLPEGDAQERTVDSHVSKLRRKLEDVGVIGIPATIRGVGYRFLD
>NC_011071.1|WP_041864655.1|2374530_2375007_+|hypothetical-protein
MASTTAWTLASPHVLAPLLAGFGAAALLWFRSDGPGHASRLGSPASLALIGLAVSSETKPTAAGATLHLPLALATLLVATQMTLRLRAIMRMATRLQARVDAADMASRWARLSAALSALAARNLREGRPLAPSLHRTLVLATLAWAANEEAQAMERRR
>NC_011071.1|WP_041864656.1|2384650_2385739_-|YcaQ-family-DNA-glycosylase
MPATPTLDDLRRHAVARTLFKPTSLLTAIRRLGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYARLPVEEDCLVNYGFLPREHLALMHPRVSKRAWDAETQRRAADVLAFVRERGSVHPREVDQAFAHGRVTNYWGGTSNASTHLLDGMHYRGLLRVERRDSGTRIYAVADHVEADASAQAQIERAAALIDLVVRKYAPLPSASLTYLVRLLGYGAPHLAEQTRQALKLAKQQLASCTLDGTTWYWPADENPRSRRHAPDDQVRLLAPFDPVVWDRRRFELLWDWVYKFEAYTPAPKRQYGYYALPMLWHDQVVGWANLSVRDGELASSVGYAGKSLARDKVFRGALEDELQRMASFL
>NC_011071.1|WP_012511177.1|2385816_2386431_-|TetR/AcrR-family-transcriptional-regulator
MSMHPEIPAPARGRPPTITPDRLADIGIKLGLPNLTMANVAAELAVTQAALYKRVANLEALKRLVADTVFQRWQIPRASADAPGGLQAYLLGFVESLCEVVKAHPGLPPYLLRRSVATTPMLEKIASHQAHVAEVFDLPLDKARWLLATVAFYCIAGADTVYGLVDDETEVLTGRRVQDEEVITEFKQGMRALVIGSLEVLELR
>NC_011071.1|WP_041864525.1|2386670_2388917_+|TonB-dependent-siderophore-receptor
MTVYHLPSPLQRAAADPTRPVMLPPGMARRYQSTPNARSGQTQALGIRVSALALGLLASFAALAESTPSTLPSVQVQEQRRVTGDYVGGQVASGGRVGLLGDKDFMDTPFSTVSYTEAFIRDRQAKDLTDVIAATDPTVFSNGVTGSWSENYAIRGFASNTSDTTFNGLSGMAPYYRTSPEMFERIEVLKGPSALLNGMPPGGSVGGSVNLVPKRAGEQPLLRISANFASDAQFGTHVDVGRRLGADKQFGIRFNGAYRDGDGAVGKQSKKVQLGSLALDWRSERARLSADLYSADDRVDGPARGVGLAPGVAIPRPPRGDTLINPDWAYVDSQDKGAMLRGELDINEHLMAYLAYGTSKTDYRYNGSISAQILNPAGDFTTVIGQLAFDIKKQSGDAGLRGSFRTGSVGHQWAANVTHYQHTQNDYGRRSVPGWDWTTNLYDPVWGPAAPFVAPHISHTELQLDSIGFADTLSSANDRVQLTLGVRRQQVVSETFNVASGARTSRYDESATTPAAALLVKATDKLSIYTNYIEGLSQGATAPMTAANAGDVFAPFRTKQKELGLKLDLGSFAHTFSVYEIKRPSSYTDPVTNIFSFGGEQRNRGVEWGFFGSPLDGMRLLGGVAYVQPKLTRTAGGVNEGRIATAVAQRQAKLGVEWDVPALEGLTLTGNATAMSKQYISADNRLSVPGRTLFDVGARYSTTVAGRPLALRASVNNVTNKAYWGMPLLSSLALGAPRTVLLSATMDF
>NC_011071.1|WP_012511179.1|2388984_2391669_-|protein-kinase/lanthionine-synthetase-C-family-protein
MSDVTARLYTLVDSVHFESPDRYAPSDEYGAVVRSCLPSGWGVQPRGFWTFCRPPQDVALPHGWKIHLSCIPENAEQTLAVMTPVVVEAGVSFKFCSDPFMLGLSLGKGWSRFQAGKFITIYPRDRQQFQELLERLYQVTQGLSGPHVLTDRAYRDSTVVYYRYGAHAGVSRPDPYGSLQQGYLLADGTWHEDVRGAGFRLPPGVDDPCVAAAAAPTPAGPIVLNGRYQVHGVLKFNGTGGIYRGRDTTTGQKVVIREVRGFSDADGAELVNGMVNGIKREARILQKLSATGLVPVFVELFKEWNNWFLVQEQLDAISLWDSAMAFYFAEDEQRACDGFERIRRRISQIAEALQVVHEHGVVLRDLTRSNVMFTAAGEVKFIDLEFAHEIGHDSHWAKGWTPGYASQEQLQAQRPTVQEDHHALGALIFDMITFCASGLDLSRDALLEHKFKQVLGDLGLPMDLHDIVVGLTHQDPGQRWDIGRALRHLRTAPSPQSGVLMFPTRSALLAAPPAAAQTERRIAAVLEGYERYLSSTCDLSRADRLWPAGLQMFMTNPVSLQFGATGVAFFLLRRTGTLAPGVLDWIENAATPQRCPSGLYSGRGGVALLLICAGRHEAAHRLLDEVNEDASALLLPGLYFGAAGVGLLNLHAWQGLGDPTHLAVAARIGDTLLAAGQRAPQGRYWKAGDRTGLGLGDGQSGIALFLTYLGKVTGDRRYLAAAAEALDFDIAHGLRIAGRLVWPTHVEGAAGAPASPHTRFGSAGVGMACLRHYVATGTERFRDVALDCAHSVRPRITNKIWQDSGNAGFGEYLLDLACLLQDERFSNAAYYQAEAILPHALDCEGGVAFAGPAHYRICNDYGMGGSGIGIFLDRLLSRRSRFLMLDELLGVRAC
>NC_011071.1|WP_041864657.1|2392130_2392796_-|conjugal-transfer-protein
MQATPTRMFTFDPVLSSGARELLKWIALLAMTGDHGAKVLFGGYVLVVSELGRIAFPLFAIVMACNLAQPGADLRKSIRRLTLWGLIAQPLHALAFGSWLPLNILLTFAFAAVAVHALANNRPVQLLLAAGVLPMFVDYQWAGVGSVLLAWIAFRHRAWWLLLVGLAAVCWANYNGWALLAIPVVLLAARVTWQLPRWRWAFYGYYVGHLAVLAVFAWMFS
>NC_011071.1|WP_012511182.1|2392910_2393858_+|prolyl-aminopeptidase
MRTLYPAIEPYREFTLPVSDLHTLHIEECGTPDGIPVVYLHGGPGAGISPTHRRFFDPARYRIVLIDQRGSGRSTPFGELRDNTTQDLVADIEKVREHLGIERWLVYGGSWGSTLSLAYAQAHPERATGLIVRGVFLGREMENRWFAETNGGARWIFPERWDRYEAYIPEAERGDMIAAYWTRMDSADEATRIAAAQAWLGWEDNAATLQHDVDAVSTDDPLDTLAKARIEAHYFRNGIFLEPNQLLRDIDRIRHLPGVIVQGRYDIICPPRSAWDLAKAWPEARLEMVTSGHSANEPATVDALVRATDAFADRF
>NC_011071.1|WP_012511183.1|2394163_2394463_+|hypothetical-protein
MTGFRYLPTLLILSAGLLLGACSKTQEASKATAAEDVTEVKLIPAYESLDKDKDGIVTLAEVDAVAPDWAERLHACDTDRNKTLSRGEYDVCKQTSTSH
>NC_011071.1|WP_006369764.1|2394756_2395056_+|hypothetical-protein
MSYKILYITLRRLIGERDVAALRSHLLQHGPVVFARSLSLGSPRVVADALSLLPISERINVLRHLPYPLRDAMKPLCIGGSQRLHMQPWSPAVLAMRHA
>NC_011071.1|WP_012511184.1|2395118_2397878_+|magnesium-translocating-P-type-ATPase
MSLLNAWFNAFLRSRRAGNLFGRRAMPEAGFGPGSAEAAPFALTTGLVTLSQLDEPRLLAALDSHVDGLSPHEAEERLVTLGPNEVDHEKPLPWWRHLWQCYRNPFNLLLTVLAAVSWLTEDIKATVVIGAMVLLSTLIRFVQEGRSNRAAERLKALVGNTARVLRRNPGTEAADVADQYFGAHLHSRRPARLLDLPIRELVPGDHIVLSAGDMIPADCRVLTAKDLFVAQAAMTGESLPVEKFAHPGDGLAGLLEQHNLLFMGTNVVSGTATAVVLATGNRTYFGTLAQRSTATDRAPTAFQAGVNSVSWLLIRFALVMVPFVLLINGWTKGDWTEAFLFALSVAVGLTPEMLPMIVTSTLAKGAVLLSRRKVIVKRLDAIQNFGAMEVLCTDKTGTLTQDKIALERQTDVFGHDSEDVLKFAYLNSHFQTGLINLLDRAVLEHVELQSSLRLSQDYHKVDEIPFDFERRRMSVVVSEREDHHELICKGAVEEMLAVCSTVRENGEDKPLDEQRLARVRQTTEELNEQGLRVVAVAMKETAASQTVYSQADECGLTLVGYVAFLDPPKESAAQALQALAAHGVEVKVFTGDNELVTARVCAQVGLEADTILTGPQIERMDDGALSRALHHHRVFARLTPLHKERLVRELRAQGKVVGFLGDGINDAPALRAADIGISVDSAVDIAKEAADIILLEKNLMVLEEGVIQGRRTFNNMLKYIRMTASSNFGNVFSVLVASAFLPFLPMLPLQLLVQNLLYDISQIAIPFDNVDEELVRKPLKWNPADIGRFMVFFGPISSIFDLSCFALMWYVFDARTPADQGLFQSGWFVVGLLTQTLIVHMIRTPKVPFLQSIAAPPLLVMTGLIMAIGVALPMSPLAGYFKLQALPTGYWPFLVAILFGYAVLTTVLKKIYIRRYGWQ
>NC_011071.1|WP_012511185.1|2397909_2398647_+|MgtC/SapB-family-protein
MDINPNLPAFNAGATLSSLISLSVAFVLGTVIGLERQLRQRTAGLRTNTLVAVGAAVFVDLAVRFHDLYGGPPSPLHVVAYVISGVGFLGAGAIMKDGAQVSGLNTAATLWGSAAVGACAGIKLLPEAVLAAVFVLAANTLLRPVVNRIQRQPLPEAFSEATYAINVVCQREQQAEVLDQLLLLLEQAHYPVRAVDQRPFGERDVEIEAVLYATTVDAGELDAVLATLATTPGVLQGFWNASLEE

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Crispr_ID: NC_011071_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_6

3123256-3123359

Orphan

Consensus_repeat	Method
AGGACCAACGGTCCTCACCCACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_6

>merge|NC_011071|6|3123256-3123359|CRISPRCasFinder
AGGACCAACGGTCCTCACCCACAGGATTCCAGGCAAAAAAAAAGCGGGCCGAAGCCCGCTTTTTCATCTGCGAAAGCGTGAGGACCAACGGTCCTCACCCACCG

>NC_011071|6|6|3123256-3123359|CRISPRCasFinder
AGGACCAACGGTCCTCACCCACAG	GATTCCAGGCAAAAAAAAAGCGGGCCGAAGCCCGCTTTTTCATCTGCGAAAGCGTG
AGGACCAACGGTCCTCACCCACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012511704.1\|3133249_3134710_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NC_011071.1\|WP_012511701.1\|3126071_3126980_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|179870
NC_011071.1\|WP_006381122.1\|3134725_3136234_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NC_011071.1\|WP_006381060.1\|3131894_3132485_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_011071.1\|WP_012511697.1\|3119274_3120834_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NC_011071.1\|WP_005410439.1\|3118704_3119001_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006381058.1\|3130378_3131890_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NC_011071.1\|WP_012511698.1\|3120870_3122061_-\|glycoside-hydrolase-family-18-protein	unknown	unknown	gnl\|CDD\|119365
NC_011071.1\|WP_012511694.1\|3113740_3114736_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_011071.1\|WP_005410436.1\|3115299_3115497_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_011071.1\|WP_012511705.1\|3136257_3138432_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NC_011071.1\|WP_012511695.1\|3116373_3118275_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NC_011071.1\|WP_005410445.1\|3125637_3125898_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_011071.1\|WP_012511700.1\|3123377_3125486_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_011071.1\|WP_012511703.1\|3127634_3130286_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_011071.1\|WP_006380762.1\|3114928_3115288_-\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_011071.1\|WP_012511702.1\|3127089_3127473_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_011071.1\|WP_006380763.1\|3115781_3116324_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_011071.1\|WP_012511696.1\|3119000_3119264_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_100469082.1\|3122119_3123250_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012511704.1\|3133249_3134710_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	2.12681e-175
NC_011071.1\|WP_012511701.1\|3126071_3126980_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|179870	PRK04642, truB, tRNA pseudouridine synthase B; Provisional.	0
NC_011071.1\|WP_006381122.1\|3134725_3136234_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	0
NC_011071.1\|WP_006381060.1\|3131894_3132485_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.06462e-58
NC_011071.1\|WP_012511697.1\|3119274_3120834_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	6.33555e-43
NC_011071.1\|WP_006381058.1\|3130378_3131890_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NC_011071.1\|WP_012511698.1\|3120870_3122061_-\|glycoside-hydrolase-family-18-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	3.9438e-106
NC_011071.1\|WP_012511694.1\|3113740_3114736_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_011071.1\|WP_005410436.1\|3115299_3115497_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.20954e-22
NC_011071.1\|WP_012511705.1\|3136257_3138432_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NC_011071.1\|WP_012511695.1\|3116373_3118275_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_011071.1\|WP_005410445.1\|3125637_3125898_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.04573e-48
NC_011071.1\|WP_012511700.1\|3123377_3125486_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_011071.1\|WP_012511703.1\|3127634_3130286_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_011071.1\|WP_006380762.1\|3114928_3115288_-\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.31491e-62
NC_011071.1\|WP_012511702.1\|3127089_3127473_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.86866e-38
NC_011071.1\|WP_006380763.1\|3115781_3116324_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.69486e-92
NC_011071.1\|WP_100469082.1\|3122119_3123250_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.19506e-06

>NC_011071.1|WP_100469082.1|3122119_3123250_+|hypothetical-protein
MSAHVVPWTGTGRCKLPRAWPTHVESTSLQDNMRPAWAMVSLDFYRRTDMTADHDADGELLDDETLEKLQALEARAYAAFDEGDLPDAADLFGELVELTPGIPHLHYMRGLAHKYLRDWPASLRDNLCSERLRDAFDQATAWNAGIAATGAGDWAEARRQWARCGIALPEGEGPIEGNFGVACVRLNPWSSGETVYMRRLDPVRARVENVPLPESGFRFGDIVLHDGASTGQRLYGERQVPVFNAMQRLQQSDMATYAVFVQCDAAEDITALRALSLPGIGLVEDWTHSVRHLCLRCSYGTPHQHDDGDADDDEGWVRDRNLGIAAQGRAAVEKLMAVWTAAGAGRVLEAIEQREHPMSDPKPGQVWWLGEEEESA
>NC_011071.1|WP_012511698.1|3120870_3122061_-|glycoside-hydrolase-family-18-protein
MFRQTVAVLAVLIAGALPIAAHAAPAQPPIFGAYYPGGSAERYPVSSIPAERLTHLFYAFSTIEDGRCTIGAEAPKNFAALAELKKAHPHLRTLISIGGWGAGGFSDAALNEASRKRLVDSCMALFFERHAGSFDGVDIDWEFPVSGGPKELAHRPQDRANLTRLAQAFRVALDARGRKAGQPMLLTAALAAGRLQTDGPYDPAASYDLPALARLFDFINLMSYDMGTGFSAVSTFNAPLHEVPADPLAPELRRWNNVAGAVQYYREHGVPADKLVLGVPFYGRGFKVTGEAADGLYQAYSAPADAGDWRVIKARYLDQPGWTKHWQPQAQSPWLYNAEQKVFISYEDPRSIGLRAQFAREQGLAGVFMWELTGDDEQASLLNAMLGPWQKARIGD
>NC_011071.1|WP_012511697.1|3119274_3120834_+|PepSY-domain-containing-protein
MKFSSQTLRTFTTLHTWVGLVAGFGLFVAFYAGALTLFHHDLPLWQTPGAASALPAGLDDAQYLLEDVLAAHPEARRHVGMTFPGTEHPQPLAYWQADDGSWRYAWPGQIAGSPTPPQTGLAELVNELHYSLGLPVAGIYVMGIVSLLYGMALLSGLVIHLPKLFGDLFALRPGRNLKQLWQDAHNVIGVLSLPFHLMFAVTGALLCLVFVQMALLNPLIYDGKALQAVPTAMDTAPVRDASGIPAPPGSLRVLHARALEVARAQGVANFEPAYLKLANAGDANATIEITGESTGTLGPLGAVALDVTTGNVLASQLPGQRDANHATLSAAYALHFGEFGNGVVVWLYFLLGLGGAFLFYSGNLLWIESRRKRRQPQQPRAGVNMARATVGVCIGLCVAISVAFVTALVLERWAPSAVDQGIRWACFGSWVLCALWAALRRPAQAARELLWAAAISTALVPVVHGALNGDWLWRAAARGHWPLFWVDAIALAMAFGFARLAVASQRRARHGDPNSVWAD
>NC_011071.1|WP_012511696.1|3119000_3119264_+|hypothetical-protein
MWPRAFAGIVAGFLLAAAATGLVTWLPPGPWQNALVPSLITFIPLWMLAALWAFSFRSALRAWLVLAGSGAAGFAVLALLRLTGAVQ
>NC_011071.1|WP_005410439.1|3118704_3119001_+|hypothetical-protein
MITVGLSTLGFCSLGMLAAMFSALAFYAASPHCRWPRLRRAGRLGRQIGLVAAAAALWLWMAELGFAAGLVAMLCTWMLAAMLLPALAAWHRPGTESP
>NC_011071.1|WP_012511695.1|3116373_3118275_-|threonine--tRNA-ligase
MINITLPDGSRREFENPVSVMDVAQSIGAGLAKATIAGSVDGVLVDASDVIDHDASLRIITAKDEEGVEIIRHSSAHLVGHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEKRMGELIAQDYDVIKKVTPRAEVIEIFKARGEDYKLRLIEDMSDDIQAMGMYYHQEYVDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAQNEQLQRIYGTAWADKKQLEAYIKRIEEAEMRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWALWQVVEQYMRKVYRKTGYGEVRCPQILDVSLWQKSGHWDNYQDAMFFTESEKRTYALKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCTENQVEAEVTAFHQQALAVYQHFGFDEIQVKIALRPESRLGDDATWDKAEGALRSALSSNGVEWQELPGEGAFYGPKIEYHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANITDAQAEYVSDVTKTLADQGFRVSADLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAVAVRTRSGEDLGSMSLQAFIERLQAEGA
>NC_011071.1|WP_006380763.1|3115781_3116324_-|translation-initiation-factor-IF-3
MGDRNISTPDNKQNRKNQEIRVPRVRVIGSDGEMIGVLTRDEALSMAEDEGLDLVEIQPQADPPVCKIMDFGKFKFEAQKKASEAKKKTKQVEIKEVKFRPVTDEGDYQIKLRKMRGFLEEGDKIKVNIRFRGREMSHQELGREMANRIETDLGEDIVIESRPRLEGRQMVMMIAPKKKT
>NC_011071.1|WP_005410436.1|3115299_3115497_-|50S-ribosomal-protein-L35
MPKIKTNRAAAKRFRKTASGKYKCGHANRSHILTKKATKRKRNLRQTGHVRAEDAGRLDRMLPYL
>NC_011071.1|WP_006380762.1|3114928_3115288_-|50S-ribosomal-protein-L20
MARVKRGVQARRRHKKILDLAKGYYNARRKVFRVAKQAVIKAQQYAYIGRKQKKRNFRSLWITRINAAARINGLSYSRFMNGLLKAGITLDRKVLADIAVHDAAGFTALAEKAKGALAA
>NC_011071.1|WP_012511694.1|3113740_3114736_-|phenylalanine--tRNA-ligase-subunit-alpha
MSDIQSLTTQALADVAAAQSPDVLEQLRVALLGKSGSITSQLKQLGALPADERKAAGEAINQARDALSHALGERKAVLEDAALDARLAAESIDITLPGRSAERAGLHPITRTLERITGIFGRLGYELSEGPEIEDDWHNFEALNFPPHHPARAMHDTFYFGDGRLLRTHTSGVQVRYMGDHAPPLRMIAAGKVYRSDSDQTHSPMFHQVEGLLVDEHSTFADLKGTLAEFVRAFFERDFEMRFRPSYFPFVEPGAEVDIAWQQPDGSTRWLEVLGCGMVHPNVLRNVGIDPERYTGFAFGMGVERFAMLRYGVNDLRAFFENDVRFLKQFA
>NC_011071.1|WP_012511700.1|3123377_3125486_-|polyribonucleotide-nucleotidyltransferase
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDIPALIGASAALSLAGTPFKGPIAAAKVGYKDGEYILNPTVSELKESQLELVVAGTANAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTALISAVQEAVGPRLGEAFQVRDKLQRRDAISAIKKDVVESLAGRVAAEGWNPAELSKEFGELEYSTMRNSVLDTKVRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLESFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLSDILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHGLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGASAE
>NC_011071.1|WP_005410445.1|3125637_3125898_-|30S-ribosomal-protein-S15
MSIDTQKVIEDNKRSSADTGSPEVQVALLTARIELLTGHFKTHKKDHHSRRGLLQMVNRRRSLLDYLKKKDVERYKALIEKLGLRR
>NC_011071.1|WP_012511701.1|3126071_3126980_-|tRNA-pseudouridine(55)-synthase-TruB
MTRIQFRRLDGILLLDKSAGMSSNAALQVARRLFRAEKGGHTGSLDPLATGLLPLCFGEATKIAGLLLGSAKAYDAEIVLGQTTDTDDAEGQVLLQRPVPQISAEALQAALAPLTGSIRQRAPIYSALKQGGEPLYMKARRGDAIEAPEREVQVHAIEVLEQQPEQLRLRVTCGSGTYIRSLARDLGESLGCGAHISALRRLWVEPFHQPAMVTLDQLRAMVEAGDEAGMDALLLPLAAGLAEYPRVELDADQVHRFCVGQRQRDPSWPRGLVAVFGPDAVVQGLGQVDDSGLLAPQRRFNL
>NC_011071.1|WP_012511702.1|3127089_3127473_-|30S-ribosome-binding-factor-RbfA
MPKTFHRTDRVSAQLRRELGTLVHNAVREHGLPSVSVSDVEITRDMAHAKVFVTALMPERSAEAVAGLKELGYRLRMDLARAMKLRHVPELHFHYDDSVDRGEHIDNILRDLPDTLAAEKRREGDDE
>NC_011071.1|WP_012511703.1|3127634_3130286_-|translation-initiation-factor-IF-2
MSQQTTIRKLAELVNTPVEKLLEQLAGAGMKFSGPDQVVTSSEKVKLLGFLRRSHGKPEQAPEETDQSAKKITLNRRKQQEVTVNSGRSKTTVNVEVRQKRTYVKDGARAMTPDEERADILRKLEESRARNLAEQQALAEKDRLRDEAIVRAREEEVAAKERAEAEKKAAEEAAAAAKAAEALAASKPKVRAPIDETAPRPPRAPAAAPAAPRGAPPPPPRSDDRNNRSAPRNERGPGDRFAGQMHLSAADRARRGNSNNSNNRGRPGGRNQSGGRRDMSRGGNNAGPHAFERPTAPVVREVAIGETITVADLAQKLALKGGEVVKALFKMGVMATITQSIDHDTAALVTEELGHKAIRANDNDAEDALLASAGENQGEAVQRPPVVTIMGHVDHGKTSLLDYIRRTKVATGEAGGITQHIGAYHVDTPKGVISFLDTPGHAAFTSMRARGAKLTDIVVLVVAADDGVMPQTKEAIQHARSAGVPLIVAINKIDKSGADPMRVKNELLSEQVVAEDFGGDIQMVEISAKTGLGIDDLLDAVSVQAELLELKAVDEGRANGVVIESSLDKGRGPVATVLVQQGRLKKGDYLVCGIQYGRVRALFDETGKQPEFAGPSIPVQVLGLSGVPEAGDDFVVVDDERLAKDVAQQRETKRRESRLVATAGSRMEDIMATLGKGEGQQVLNLVIKADVQGSVQALSQALVALSNEDIRINVIHSGVGGITESDANSAAASKATVIGFNVRADASARRIIESNGVDLRYFSIIYDVIDQVKQVASGLLGVEIREEIIGIAEVRDVFRSSKLGAVAGSMVIEGVVKRNKPIRVLRDSVVIFEGELESLRRFKENVEEVRNGTECGIAVKAYNDVKPGDQIECFERIEVPRTL
>NC_011071.1|WP_006381058.1|3130378_3131890_-|transcription-termination/antitermination-protein-NusA
MSKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRWEVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVREAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVLAHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLFMDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEALAVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEELSDLAADEVMDFGIEGLDQARAAALILAARAEEIARLERGE
>NC_011071.1|WP_006381060.1|3131894_3132485_-|ribosome-maturation-factor-RimP
MSDKATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSREVSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGESAKVTLKLPQDNRRRLQGRIEAIDEAAGAITFIVDKAEVVVSADNIDKARIMPDWVALGLAPSKPTGPAPKRPKPKTNSSSNEPAAKKPRAE
>NC_011071.1|WP_012511704.1|3133249_3134710_-|NADH-quinone-oxidoreductase-subunit-NuoN
MTTSPLLPLTAADLPPLAPELVLIGSAFALMILDLFVSNRNKLVTHLFSLAALAVVLFMLATGVGGQGEVFHGMFVRDTAADVMKTGIVLLSGLTLVYGWRYLRDRNLFQGEIPVLILFGTAGMMILVSAGSLLMVYLGLELLALCSYALVASNRENGLASEAAMKYIVLGSLASGLLLYGMSLIYGATGSLHLDVIREAIPHSEERVLLITGAVFMIAGVAFKLGAAPFHMWLPDVYQGAPAPIALFISSAPKLAAFGMAYRLLEMGVGPLSTELQLLIAGLAAVSLVIGNLMAIAQSNLKRMLAFSTVSHIGFLLMGIAGGGSQGYAAALFYALAYAIMSTAAFGAIIALSRAGFEAENIEDFKGLNARNPWMAGLVLCIMASLAGIPPFLGFWTKLAVLGAAINGGLLWLAILGVLCAVVGCFYYLRVIKVMYFDEPVGEAMPRSNDRVLGLVLGVNALALLALGLAWNPIMVWCQQAFAHIA
>NC_011071.1|WP_006381122.1|3134725_3136234_-|NADH-quinone-oxidoreductase-subunit-M
MSNWPLLSVLIWLPIIGGALILAIRDAQTARWASLGVAVLTFVASLSLLSGYNAGVDGMQFVETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLILEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLVALIYLYMKGGSFQLADLYALPLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDDMKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSSVGVLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILAAFQRNPWIALGAATTLIIGAAYTLWLYKRIFFGEVANSHVAELKDINGREWLVLGVFAIGVLALGIYPKPLTDLMEPSIAKLAMQIASSKLL
>NC_011071.1|WP_012511705.1|3136257_3138432_-|NADH-quinone-oxidoreductase-subunit-L
MEITLSKSLLIAVVLAPLFGSIIAGLFGRQVKRFGAQTITILGVAVACGLSMYTLYQLLWGGAQPFNQNIYTFFEVGQYSAHVGFMVDKLTAMMMVVVTFVSLLVHIYTIGYMQDDPGYQRFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAIFANMKAFLVNRVGDFGFLLGIAGVLWVFGTLDYSQVFSQAGMLADPRAQLQIWDGTMFGMQLLNEPVIWSIATVICICLFIGAMGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSQTALNFILFIGATTAFFTGLIGIVQNDIKRVVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLGAGSVIIAMHHEQDMRKMGGLRKYMPITFVTMWIGTLALVGTPFFSGFYSKDTIIEAAEIHAHMQNSWVATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHDDHGHGHDDHHAADTHHADAHHGDAHDDHGHGHGPHEPHETPWVVTLPLILLAIPSIAIGFFSIGPMLHGTDWAGHHAHEAIKGQAQTFFTGVVDFYDPAKNTVAFLGEEFHGPVAFALHGMMLPPFWLTLAGFLLAALFYLWKPDLSGKARKTFAPLVSVLENKYGFDKLWIDGFAGGGVKLGKVSRWIDSNIVDGVVNLSARVVDVAAGVLRRTQSGFLYHYAFAMIIGLIALLGVLMHYLR

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Crispr_ID: NC_011071_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_7

3485042-3485133

Orphan

Consensus_repeat	Method
GCACCCACCAGAGTCAGACCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_7

>merge|NC_011071|7|3485042-3485133|CRISPRCasFinder
GCACCCACCAGAGTCAGACCTCCCCGGTAGCGCCGGGCCATGCCCGGCGGACAGTGCCAACCAAGGTGGGCACCCACCAGAGTCAGACCTCC

>NC_011071|7|7|3485042-3485133|CRISPRCasFinder
GCACCCACCAGAGTCAGACCTCC	CCGGTAGCGCCGGGCCATGCCCGGCGGACAGTGCCAACCAAGGTGG
GCACCCACCAGAGTCAGACCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012511892.1\|3483379_3483718_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006386162.1\|3488291_3489611_-\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	unknown	unknown	gnl\|CDD\|179892
NC_011071.1\|WP_006385814.1\|3479545_3479866_-\|zf-TFIIB-domain-containing-protein	unknown	unknown	gnl\|CDD\|226331
NC_011071.1\|WP_006385820.1\|3481340_3482279_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NC_011071.1\|WP_012511894.1\|3485204_3485870_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|284031
NC_011071.1\|WP_012511890.1\|3478989_3479502_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_011071.1\|WP_006386166.1\|3490952_3491381_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NC_011071.1\|WP_012511895.1\|3485947_3486649_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275145
NC_011071.1\|WP_012511896.1\|3486886_3487705_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|224643
NC_011071.1\|WP_012511893.1\|3484045_3485002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370782
NC_011071.1\|WP_006385816.1\|3480015_3480783_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_011071.1\|WP_006386170.1\|3492195_3492627_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NC_011071.1\|WP_006386164.1\|3489907_3490963_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
NC_011071.1\|WP_012511891.1\|3482363_3483206_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NC_011071.1\|WP_010481595.1\|3492616_3493657_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NC_011071.1\|WP_012511889.1\|3476081_3477884_+\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NC_011071.1\|WP_006385663.1\|3477880_3478906_+\|copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
NC_011071.1\|WP_006386160.1\|3487708_3488227_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|274307
NC_011071.1\|WP_006386168.1\|3491405_3492185_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NC_011071.1\|WP_006385818.1\|3480877_3481303_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_006386162.1\|3488291_3489611_-\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	gnl\|CDD\|179892	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB.	0
NC_011071.1\|WP_006385814.1\|3479545_3479866_-\|zf-TFIIB-domain-containing-protein	gnl\|CDD\|226331	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown].	5.884e-29
NC_011071.1\|WP_006385820.1\|3481340_3482279_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.44499e-38
NC_011071.1\|WP_012511894.1\|3485204_3485870_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|284031	pfam06508, QueC, Queuosine biosynthesis protein QueC. This family of proteins participate in the biosynthesis of 7-carboxy-7-deazaguanine. They catalyze the conversion of 7-deaza-7-carboxyguanine to preQ0.	3.56107e-108
NC_011071.1\|WP_012511890.1\|3478989_3479502_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.71746e-10
NC_011071.1\|WP_006386166.1\|3490952_3491381_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.50379e-48
NC_011071.1\|WP_012511895.1\|3485947_3486649_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275145	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type. Members of this radical SAM domain protein family appear to be a form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in preQ0 operons species that lack members of related protein family TIGR03365.	5.8389e-154
NC_011071.1\|WP_012511896.1\|3486886_3487705_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|224643	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown].	3.83833e-51
NC_011071.1\|WP_012511893.1\|3484045_3485002_+\|hypothetical-protein	gnl\|CDD\|370782	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268). This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.	0.000107828
NC_011071.1\|WP_006385816.1\|3480015_3480783_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	0.00794677
NC_011071.1\|WP_006386170.1\|3492195_3492627_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	1.04024e-61
NC_011071.1\|WP_006386164.1\|3489907_3490963_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.19557e-13
NC_011071.1\|WP_012511891.1\|3482363_3483206_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.61209e-40
NC_011071.1\|WP_010481595.1\|3492616_3493657_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NC_011071.1\|WP_012511889.1\|3476081_3477884_+\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NC_011071.1\|WP_006385663.1\|3477880_3478906_+\|copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	5.35519e-113
NC_011071.1\|WP_006386160.1\|3487708_3488227_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	2.25081e-59
NC_011071.1\|WP_006386168.1\|3491405_3492185_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.19357e-106
NC_011071.1\|WP_006385818.1\|3480877_3481303_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	4.86064e-20

>NC_011071.1|WP_012511893.1|3484045_3485002_+|hypothetical-protein
MRLPFCLIAALLLPCAALAAPPQVVTEDIGRFWATYDAVRAEPDAERQVALVQQHYIDPGSPGLHALMQVRNYTAREYAEAMRSWPRFWNSVRPLTANAQQASATLERDLSDFRALYPALRPATITYAVGVLRTGGTTLGDKVLIGAEMALGDERVDVSELPEPMRSRLRIFYDSRPGANNAQNNLHEYVHTQQRETTGSLAQYAVREGVAEYVAERISGRRPALPLYTYGPAHEAEIRTRFIAEMDGDDLDNWLYNSARNPFGVSDLGYYAGYRIAQEYMRQQADEKAGIARMIELDYADPKAVRAFIEASGWLRER
>NC_011071.1|WP_012511892.1|3483379_3483718_+|hypothetical-protein
MLSVLIATTLAAGSPQASNIPPASAAYADCLLAHLQPGLSDHAIPLLQQACVAKYPESYVAYSELERRISAQRRADFEAAQAEAARSANAAATAAQEAADAAAAKAKGMRAK
>NC_011071.1|WP_012511891.1|3482363_3483206_-|alpha/beta-hydrolase
MRLIALSLLLSVVSAAPLMAAESASPAAASPLVIGETFTIESKALGETRRINVYRPQPWGLDPKAPLPVLYMADGGIAEDFLHVAGLVQVLSGNGSMRPFLLVGIENTERRRDMTGPSNDPQDQKIAPRIGGSAAYRRFLRDELMPQVRQRYPTTDERALIGESLAGLFVVETLLQEPTLFNSYIALDPSLWWNHGAMLAGAAKQLPAVTRAQPQVFLASSGQPELAASTARLAALLQQASPSPLVKYLPLPEETHATIYHPAALQALRTLFPAPPPASP
>NC_011071.1|WP_006385820.1|3481340_3482279_-|alpha/beta-hydrolase
MQRVRGWSVAACLVVSGCAMSVAPPAAQNEAKESAATAAPGVVLPDTEALRVHDPVGRDYPIWVALPADYAAHPEKHYPVLYVTDALYSFPLVRSVRNLVGQQGVNIENFILVGLPPQEGLTSKQSRSRDYTPSNPARTAKGYYSDDVTYGGAAHYRDFLAEHVLPMVDARYRTDPARRVFAGHSYGALFGTYVLTTQPDLFSTYILSSPSLWFDQLLLPRMQDAAVIPSQPTRVLLSVGSYETDKPGPRYSTGNDMLRQTADFTTQLQRSGRKLQVDNVVIDGEDHLTVYPRVITRALLEVMPGDGPYTGG
>NC_011071.1|WP_006385818.1|3480877_3481303_+|response-regulator
MLLSKRFVEPRVLLIEDAEETQELSRLALESQACQVTAVSSAEAALGLLNAGEPFDLLFTDVCLGGISGIETANRVREHLPQLPILVTSGMDQHRVLPQLRAGIHFLPKPYSMSELLDAIRLCFRHAADATLMPPPQASAA
>NC_011071.1|WP_006385816.1|3480015_3480783_+|CPBP-family-intramembrane-metalloprotease
MTILSRLPSATRLLLVLLGVGLGLNLRDIAAAAGTPIPALPMPYGGSLLDNALAILVALLLATLLRPRSMGLLASLGLRGNGWGGPLWVLLASLPCWLGLALLGTPNMALTALDAAMLTVLFPLAEEVLFRGLGFVLLVKLVRGPWPLLALPQALLFGMVHWLGFGGFDGGGIALFIGAVIAFGGFIFAWLDHLDGDTLWCGLVLHVSMNLAWNVFSLDDAVALGWQATSLRIGTTLLAVAVLAWHVRRQRRDRV
>NC_011071.1|WP_006385814.1|3479545_3479866_-|zf-TFIIB-domain-containing-protein
MLCPVCKTQTLQMAERHGIEIDYCPGCRGVWLDRGELDKIIERAGAGAAVPPPAPVQQHPASSPPPVMHRDTRHLGQRYEDNRGQQHGHGYKKKKKESFLSELFDF
>NC_011071.1|WP_012511890.1|3478989_3479502_+|GNAT-family-N-acetyltransferase
MSLQIRRATLADVDALSAIAIATYTETWGDSYPTQDLHDFLQDHYSGEPQRIELSDPRSAIWLLMDDDAVVGYLAAGANTLPHADAREGDIELKRFYILAAHQNGGHGARMMDAFMAWLDQPHLRTLWVGVWEENFGAQRFYSRYGCSKVGEYDFIVGDSRDREFILRRP
>NC_011071.1|WP_006385663.1|3477880_3478906_+|copper-resistance-protein-B
MSRSLLSPSLLALGLAAALPVFAQSHAGHDMAAMNAPAKTAKSPVEPVDHSKMDHSKMDAGAMDHAGMDHSKMDHGAMQPTSTDQVTMDHSKMDHAAMGHGAPAPTEPREPIPVPTDADRAAAFPPIAHGAMEHAPEINSLLLIDRLEHWDGKSSNGQAWEATGWIGGNINRLWLRTDGERSRGRTESSSLEALYGRSVSPWWDVLVGVRQDFRPADSRTWAAIGIQGLAPYKFESSATLYMGSGGQVLAKAEVEYDVLLTNRLILQPLLEATVAAKDEKEYGIGRGLNKVEAGLRLRYEFSRRFAPYIGISHERTFGDTADYAGDHARDTRWVAGVRMWF
>NC_011071.1|WP_012511889.1|3476081_3477884_+|copper-resistance-system-multicopper-oxidase
MNTRIPPGPGAVPMPSRRLFVQGLAAGGVVAGIAAVGVPQRALAAASAAPRLAGAPAVLSDTRVELAIGESLANFTGRTRPAITVNGSLPAPILRWREGQTVDLFVRNTLERHPTSIHWHGILLPANMDGVPGLSFNGIGPGETYHYHFELKQSGTYWYHSHSMFQEQAGLYGALIIDPAEPAPYHHDREHVIMLSDWTDMDPGALFRRMKKLAAYDNYYMRTLPDFLRDVKRDGWSAALSDRGMWGRMRMTPTDLSDVNANTYTYLMNGTAPAGNWTGLFRSGEKVLLRFINGGSMTYFDVRIPGLKMTVVAADGQYIHPVSIDEFRIAPAETYDVLVEPSGQDAYTIFCQDMGRTGYAAGTLAVRHGLQAPIPERDPRVLLTMADMGHGMGGGGHDMAAMKGMEGGCGASMGHGAHGGGDSASKAPKHPASERNNPLVDMQSSASEPKLDDPGIGLRDNGRQVLTYGAMRSLFEDPDGREPSREIELHLTGHMEKFSWSFDGIPFASAEPLRLNYGERMRIVLVNDTMMQHPIHLHGVWSDLENAQGEFQLRKHTIDMPPGTRRSYRVRADALGRWAYHCHLLYHMEAGMMREVRIEE
>NC_011071.1|WP_012511894.1|3485204_3485870_-|7-cyano-7-deazaguanine-synthase-QueC
MKKAVVLLSGGMDSAAVIAMAQEQGFAVHALSVRYGQRHTSELDAAARVAKAQGVIAHKTVDVDLRSIGGSALTDDIDVPEAGGAGIPVTYVPARNTIMLSLALGWAEVLGANDIFCGVNAVDYSGYPDCRPEFVAAFQALANLATKSGVEGAGIKVHAPLQFLSKGQIVSEGVRLGVDFGLTVSCYNADANGAACSHCDACRLRAQGFTEAGVADPTLYA
>NC_011071.1|WP_012511895.1|3485947_3486649_-|7-carboxy-7-deazaguanine-synthase-QueE
MTAVTPSSAAATPSEIVQSPLPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPLRCQYCDTAYAFHGGTWWDIDDIVAEVLAQGVRHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSGALDVSAVDPRVSRVVDIKTPGSAEAARNRLENLPLLTARDQIKFVICSREDYDWAKAMLAEHDLVKRCTVFFSPSKGEITARQLADWIVEDRLPVRFQMQLHKILWNDEPGR
>NC_011071.1|WP_012511896.1|3486886_3487705_-|tol-pal-system-protein-YbgF
MRIGIKLMLVVAAALVAAAPAHAQRQSLADRVGAIEQQMYNNSANQDLLNQINQLRQQVTSLQASIEQLQHDNAQLKQSAQDQYLDLDSRLNRLEGGNAAPALPPVPASTPKAAPAPAKPATAATSERPPSVHGDAGSLAATGDERTTYNVAFDSLKAGKYDDSAQLFLSFLQLYPNGVYAPNALYWLGESYYATRNFPMAETQFRELLSRYPTHDKAAGGLLKVGLSQYGEGKVDQAQQTLETVVAQYPGSDAARTAQDRLQSIRLGKQIR
>NC_011071.1|WP_006386160.1|3487708_3488227_-|peptidoglycan-associated-lipoprotein-Pal
MNKSTRVLLVSLLSVAVLAGCSKKVKEEPQAPVDTGTSTTTPTGPSTSGLYGPGDLDTDACLRQRVVYFDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDERGSRAYNQALGERRGNGVNSALQANGGSASQLTVVSYGEERPVCTESNESCWSQNRRVEIVYTAQ
>NC_011071.1|WP_006386162.1|3488291_3489611_-|Tol-Pal-system-beta-propeller-repeat-protein-TolB
MKKMPRWLAVFAALLLPFAAVAQQKGLDIDIIGGNASALPITVVPMPYQGSSAAPQTDVAGVVRADLERSGQFRTLPEAQIVEKPVRGGDIQFATWRALKQNYIVVGRVLDAGAGAYRVEYELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKGDAMRYALMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVSFERGNSAIYIQNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLAQLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVTFQGNYNAKPSVSYDGKKIAVAQGSGNSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVLADGDVREPAWSPYRTQR
>NC_011071.1|WP_006386164.1|3489907_3490963_-|cell-envelope-integrity-protein-TolA
MHADALPPPHQREPGWGLPLALAVLVHLLVALIFIGAWLWSPQRNTDAAAGDPSVEASLALSSSEAAAARQALRQSEKLEDLPPPVAEPIPVPEDTIPPPQPIPEPRPQDAPTPQQQQAQERVAQPDTKDQDAVSALAISQEKAKQEQEAKRRQEQIDLTERKRQEEAEQKLRLAKQQEADEKKKQAEQERVAADKAEAEKQKKIAEIRARREQAEKEAKLAEQKLRQVAAARNAAGSAAAGASGAAQPAGGGGGTSDDLSAKYAAAIQAKVLSQWVRPDTVPLGQRCTITITQIPGGTVMQAKVSPNCPYDEAGRRSIEAAVLNAQPLPYRGFESVFARTLNFTFTAQDR
>NC_011071.1|WP_006386166.1|3490952_3491381_-|protein-TolR
MSAAIGRRKRRKLKSEINVVPYIDVMLVLLIIFMVTAPLLTLSFDVDLPNSNAKALESKQDPVIVSVRQDGQLSLKLPDAKEPTAVSAEELEGRLAGIAAQDKGVRVIVAADRAVAYEKVIAAMDVIKRAKVDKVGLATDAR
>NC_011071.1|WP_006386168.1|3491405_3492185_-|protein-TolQ
MIATLLALQATVTEALPADVSNAATQTLAQATTGGGINYLELMAKASLPVKIIVLALLVGSFVSWVIIFRKARIFKQATREADEFENRFWSGADLGKLYSSATDRSRNVGGLEAIFEAGFREYSRLRDKRRLDGRAQLEGAQRAMRTTYTREVDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGAQAGIAAVAPGISEALFATAIGLFVAIPAVWAYNRFTTRVERMSVRFETFAEEFSSILQRQSAGDE
>NC_011071.1|WP_006386170.1|3492195_3492627_-|tol-pal-system-associated-acyl-CoA-thioesterase
MSVEPRFSWPTRIYWEDTDAGGVVYHARYVAFMERARTEWMRALGYGQERMRAEHGMVFAVRSMQMDFIKPARLDDTLQVSATLVQLKKASMAFDQQILRDGELLLSAQVRIAALEAASFRPRGMDEAVLAVLKPHLHPESEH
>NC_011071.1|WP_010481595.1|3492616_3493657_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MTDDRIIGAGATREDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHVIANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVRRSAAILAIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEAVAQAAMKMLKVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRTARGRMATHKAYRHMGLKPKNPPQDLFAEVPDVG

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Crispr_ID: NC_011071_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_8

3841699-3841778

Orphan

Consensus_repeat	Method
CGACCAAGGTCGACACCTACCAGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_8

>merge|NC_011071|8|3841699-3841778|CRISPRCasFinder
CGACCAAGGTCGACACCTACCAGAGCAGGTTCATGGCGTCGGCGGAATAGGTGCCGACCAAGGTCGGCACCTACCAGAGC

>NC_011071|8|8|3841699-3841778|CRISPRCasFinder
CGACCAAGGTCGACACCTACCAGAGC	AGGTTCATGGCGTCGGCGGAATAGGTGC
CGACCAAGGTCGGCACCTACCAGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_006391719.1\|3848400_3849468_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NC_011071.1\|WP_006391668.1\|3838030_3838267_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006391721.1\|3849507_3850797_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_011071.1\|WP_012512112.1\|3851173_3852193_+\|glucokinase	unknown	unknown	gnl\|CDD\|237092
NC_011071.1\|WP_012512107.1\|3841809_3844839_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NC_011071.1\|WP_012512108.1\|3845149_3846217_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NC_011071.1\|WP_012512109.1\|3846216_3847365_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NC_011071.1\|WP_006391637.1\|3835380_3835788_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NC_011071.1\|WP_012512115.1\|3857694_3858087_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227939
NC_011071.1\|WP_012512110.1\|3847364_3848393_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NC_011071.1\|WP_012512114.1\|3855156_3857514_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NC_011071.1\|WP_012512104.1\|3839670_3840105_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NC_011071.1\|WP_012512103.1\|3838380_3839601_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NC_011071.1\|WP_157628473.1\|3834768_3835371_+\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012512105.1\|3840154_3840490_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012512113.1\|3852336_3855045_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NC_011071.1\|WP_012512101.1\|3831805_3834667_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_011071.1\|WP_012512102.1\|3835939_3837925_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NC_011071.1\|WP_012512100.1\|3829512_3831657_+\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	unknown	unknown	gnl\|CDD\|236640
NC_011071.1\|WP_079993556.1\|3840493_3841657_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367567

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_006391719.1\|3848400_3849468_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	6.33601e-118
NC_011071.1\|WP_012512112.1\|3851173_3852193_+\|glucokinase	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
NC_011071.1\|WP_012512107.1\|3841809_3844839_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	2.0457e-38
NC_011071.1\|WP_012512108.1\|3845149_3846217_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	9.48017e-51
NC_011071.1\|WP_006391637.1\|3835380_3835788_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	6.8355e-32
NC_011071.1\|WP_012512115.1\|3857694_3858087_-\|membrane-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.000634737
NC_011071.1\|WP_012512100.1\|3829512_3831657_+\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	gnl\|CDD\|236640	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional.	0
NC_011071.1\|WP_012512114.1\|3855156_3857514_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NC_011071.1\|WP_012512104.1\|3839670_3840105_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.59862e-09
NC_011071.1\|WP_012512103.1\|3838380_3839601_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NC_011071.1\|WP_012512109.1\|3846216_3847365_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	6.20249e-164
NC_011071.1\|WP_006391721.1\|3849507_3850797_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.56313e-121
NC_011071.1\|WP_012512113.1\|3852336_3855045_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	7.33495e-175
NC_011071.1\|WP_012512101.1\|3831805_3834667_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.14684e-28
NC_011071.1\|WP_012512102.1\|3835939_3837925_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	1.11687e-72
NC_011071.1\|WP_012512110.1\|3847364_3848393_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	1.26479e-113
NC_011071.1\|WP_079993556.1\|3840493_3841657_-\|hypothetical-protein	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	4.08646e-12

>NC_011071.1|WP_079993556.1|3840493_3841657_-|hypothetical-protein
MLGCFSRNPPNPSMGSALQHTGAWRDRSRPGYPATSIHDKESSMLDLMSVRAPLLATLLLSSSVAVAEETVELPSPEAREQMLQLLETQSLYRDRVDWNDVRARLTAAGDDRAQQRRVLDETAARSSGGHGRWFSPSEQRQRSERAQRLNAGQATALAAPRHANPRIGVLRVSPFVEDQQRSEPERYEARKVYALALQERIAGLDDGTRCGWVVDVSSNGGGNMWPMLFGLLPLLHGTPDTQGALIGAFRSANGLLWWRQAEGEVVQGNASMLRSRQGAYRLRVGTAPVAVVMGAGTASSGEAVALAFRGQPGSRSFGQPSAGFSTGNRPTTLVDGTTLLLTHNVMTDRNGQGDGGRMQPDQATPSGPATLAAAQAWLLAQPACQGS
>NC_011071.1|WP_012512105.1|3840154_3840490_-|hypothetical-protein
MILIGQHERVVTVGPTEAHHCLRCQTETEFAPQLRYRMARIDLLFGFTYQRRYELACSRCGYGWVLDTDTMDQQLGGVPIPWRHRFGLPLMLVVVVGLALSGWLWRHGFIG
>NC_011071.1|WP_012512104.1|3839670_3840105_-|SseB-family-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEAMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>NC_011071.1|WP_012512103.1|3838380_3839601_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDRLLQRPAGDRDWVVVGATPAQMEAQGYSAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPAVTLEEDLQRRDFTINAIACDEDTGTLVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMAHFAPLDFTVAPETMDLMRNVAASGELDALVPERVWQELRKALVSAQPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKELCARLRVPTEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDSDYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>NC_011071.1|WP_006391668.1|3838030_3838267_+|hypothetical-protein
MSLLVWIGMFTAWSLFATWVLRWGGAAWMEGWKSLAFVDSWGSLWDEAQIKLYFLCLWIVYGLWFVAGLFVPEWRGLP
>NC_011071.1|WP_012512102.1|3835939_3837925_+|transglycosylase-SLT-domain-containing-protein
MLVAMTRRSSTALSLLPLATTLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWTPTDNAGLRCAQLTARQVTGKVDPQWISEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPATDLALANNYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPGATEQQLPQYAQALGLSAEQSGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMASKQRSDPRWRYFEGRMLEKTGQAQQAQALFREAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQATIARDPAIQRAMALYQIDRAGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQSQRPGYDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKSFSCAANADQGGD
>NC_011071.1|WP_006391637.1|3835380_3835788_-|biopolymer-transporter-ExbD
MAFSSAGTGSPLAEINVTPLVDVMLVLLIIFIVTAPIVARPIAVQLPQATDRVVDRPEPPPPIELRLDAANQLSWNGQPMAIGDLQARLQVQAGEHAGNLPELRIATDPAAEYEGMARILAAAETTGVERIAFVR
>NC_011071.1|WP_157628473.1|3834768_3835371_+|hypothetical-protein
MIDTLSRGFDAFSGGLRQIAAGYDRTILFTTGSLDAGCDSARRQLPHSWKRSLPDRFRNSLKFLLSEGAANRSSADSHLQPFAGGSIMKAVSAVLGVTTVMTLLLSPASESRAGGLIECNNCPSPSDAALASGEGLTVVVDFERAELTAFDVEHEPKAKKWRAHPTPVPAQIETAFLRILDATLSAGEAPLMQQSPHERQ
>NC_011071.1|WP_012512101.1|3831805_3834667_-|TonB-dependent-receptor
MIHLHHRPLAVAVALCVTALAPLGAAAQSTTNLDAVEVTGTRIKRAEVEGQVPIQTLTRGDIERTGLTSIGEVLQQLTGSGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGAKRVLVLVDGIRWVNESSASGVGSATDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRDFDGGQVTLNYGEYSKGDGTQKGVDLAWGKSGDRYSLFLGASWTKQDPVFAKDREQSRFPIPGTGLAFGSGGIPQGRFRFTDPNTGAVQDIVPNTGASNPRYDGSAGCNRSDDYHCFTSADRFNFAEYNMVLTPSERKGLFGQFRFDITDNVQWYVKALGNRRESTNQAGPEPLFFGPDGATGNPLADNIVVSRLNPYNPFGFDLVSSGNMALIGRRPVEGGARVFEQKVDTTYFATGLVGDFHAADRSWYWDVNGMYSKNKAEQTNYGSYNIYNVNMALGDPAICAATPGCVPLNIFGGVGSITPDMLKWIQPVVRDRSQNELSLFTANLSSELFSLPAGPVSFATGFEYRKYEGSYQPDPLTVAGHYNGVPSQPTSGSYDVNEAYLELSVPIFADSSFGKKLDLSLAGRYSDYSTFGGEFTPKYGLRWQVTDDFVLRTTYAEGFRAPSIGELYGSAARADLQLFDPCSVGLGGTPPRGSAANCAALGVPAGFQQANSQISVTTGGNRELDPERSRSFSAGFVWSPWFGNNTSWSERFDVEVTFYRHAIDGAIQAINAQTQLDLCVDTLDPIYCEGITRANTGAVSSFNNRLTNLGSIKTDGWDVDLFWTLPQSSIGQFKLGWKNTFVGRYEATGAAGQKQPQKPGVEVADSSIPEWTSNASIGWTLDRWSANWTVRHISELTENCGDAAAFPVCSNQAAGTNTLSATTFHDMQVGYKIDWMKGLQLTAGLNNVFDKDPPICLSCSLNGYDASTYDIPRGRYWYLRADLRF
>NC_011071.1|WP_012512100.1|3829512_3831657_+|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE
MTRPAFRTLQPQRLSIAVFAALCSVAPTAFADTTADPTTLDKVVVKGERAEGYSVRRTSAGTRFDLAPREIPQSVSIISHQRIEDQKLDDIIDVLANTTGVTSTQSDSERTEFYARGFYIDAYQFDGLPTQMVQNWSYGDSGLDLALYDRVEVVRGATGLLSGAGNPSASVNLIRKHADSAELTGSVSVNVGSWGRTRTTVDVGSALNASGTVRGRVIGSYLDTDGQMDRYNQRKTLGYAVIDADLTPDTQLSVGYDYQQKRANGATWGGFPMWYADGSPTNYPTSFNPSPDWTYWDTTSKRAFATLQHAFSNGWKFKIGATHDRTEADDKLFYPAYTAFNKTTGAGITPMAGFYNTERKVDGIDGYIDGPFQLFGREHQFMAGLSYNKREFANYGDFQPDSSDPEAQYLPLASYLGWTGDFPQPNWRPLKLASQGTITQKAGYAAARLSLADSLKLIIGARYTDWKSEDEGNDRSHKVTTPYAGLVYDINDTYSAYASYTEIFQPQTLRNKQRSYLDPVDGKSYEVGVKGAWFDNRLNASVAVFRIEQDNVGQATMDKVDGQLNETAYIAARGTVSRGFEFEVNGELAPGWNATFGASRYVAKDINGADINTELPQTALKLFTSYTPQSLQALTVGGGANWQNRIYYTAPVVGRFEQEGYALVSAFVRYRISPEFSVQANLNNLLDKKYYSQITGYGAYGDGRNGSLTFTWSF
>NC_011071.1|WP_012512107.1|3841809_3844839_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MSRAVPRAFRPRRLAVSVLQALAVPSLLLTTAGVAWAGCNNPALTAGQTVTCDANAPNPQTVPITASGVAGITVNVANGAQLQQNGGGSAIALVGAGGHLLSNQGAISSVGGVAVQLGGGSRVENLGSISTGNTIALQFVGGGNSVLINRGTISGRTGVQFDAGNDRLEMQAGSIAGGVLQGDGNDVLQLSDGTIDSVDQGTGDDQVTVTGGTVTGVVVQGSGRDDFVMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRVGRVNMKLDKNLWDQSGGIVEGNVVTGFDTDTIIISGTAYIGGNISVSGGADSVTITDGTVRGQVLLSTGNDIFNWRGGGIVYGAIDMGPDNDVANLGSLNHANLGAVPLFDGGSGIDQLNFNNVKTAGVGRFQNWETISLANSTELTFDGDLVLGDSGTGTGTLTVDDTSTVYAGSGGHAVRPFNSGALVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGTATGTTGIGVLNAGGSGAATLADGILVVQALNGATTSPGAFSLFAPVAAGAYEYFLFKGGVSSGSGENWYLRSTVVAGPAPAPNGIGVNTTPPPPTPPVAPPPPITPAPPPPPEGATDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPVAGGSLPGIGTPPTPGARPAEGTVVPLYRVETATYAVVPPLLRETSLASLGTFHERQGEQRLLYNQGAFRTAWGRLVGQSSEIHWKGDAQPGFDGDVMGLQAGLDVWAAANDSHRNQIGVFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTDSSGGYIDAVAMQSRYDGRARSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDDVSSVRFDNDNAWTGRVGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRIRFDDDVIINSQRSRSLEAGVGVVGRFNRTISAYAVADYARELGGDRNEKRRIIEGNIGLRADW
>NC_011071.1|WP_012512108.1|3845149_3846217_-|DUF1624-domain-containing-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRALDVALRPALARGVLERALRILVAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYARPRVQVGALIVLLVGYTVLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNRRTAALAGLGAVAAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGYVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGAWGWIWQQLATAMPQTLELASMLQALVFVALWWGVAWWLDRRKIYLKI
>NC_011071.1|WP_012512109.1|3846216_3847365_-|N-acetylglucosamine-6-phosphate-deacetylase
MATVLRNARVLAGDEFRDDLAVVIEHGRISALLPDAAPQLGQAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVASLRTIAQAHRRFGTTAMLPTLISDDVGVMREAIDALREAIAQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEAEIALAASLDNGVTLLTLAPERVPLETIRALVERGVIVAAGHTAGTYEEIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAIDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>NC_011071.1|WP_012512110.1|3847364_3848393_-|SIS-domain-containing-protein
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRNALDLLPDAMREAWQCDWTPVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>NC_011071.1|WP_006391719.1|3848400_3849468_-|LacI-family-DNA-binding-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGISHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>NC_011071.1|WP_006391721.1|3849507_3850797_-|sugar-MFS-transporter
MSAVPAASARPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPASWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGMLAPVLIGTVVLHGIGDLSATVAAADEATKAQLLNEFAAKIHAPYLAMAGLLVVLAVAVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTSLTLGAMLVGYVVGLLLIPKVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLVFVLLMVPCYLYILFYSVIGHRAGLPQDKV
>NC_011071.1|WP_012512112.1|3851173_3852193_+|glucokinase
MTASHPAPAHVLSRVAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGSRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVYIVNDFEAVAYAAAQVDASGVLHLCGPDTAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQDQAPTLASPDAVTAAAMADTDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLRGSTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>NC_011071.1|WP_012512113.1|3852336_3855045_+|TonB-dependent-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQNATDLDTVQVTGIRGSMEKSLDTKRESNARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGSADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQFTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEVPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPLDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKTLIPGQAPNPGYVVKDGVLTNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQINDNLGMKFQAGNTKGTGDTPRQYIAEVNLARGGGANWSTHGNGSPIDWNVGGNISPGGVTDFGTWGNQQVTAIDKEKWATVDFNQYFSNAGVLNSLDFGARFGDHKREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKDAVTNNSTWLSGNDGPTGRHNYGAEWKVSEKNFAAYVQANLSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTRQAFDNKHNRVLPSANLKFDLRDDLVLRFAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSVGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTEHTWADGSDNLLGTSKNTYNVGAYFENDTFGARLSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISLDGLNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>NC_011071.1|WP_012512114.1|3855156_3857514_+|family-20-glycosylhydrolase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPAAEAPGPQLRAGSLMLIPAPSNVQAGQGSGITVRADTVLQAEGEVAQRVAAQFADLLARSGGPRLVLAKGKAAAKTGSIRFQIVPTFRDSGESYTLESTAQGVVIQAGNETGLFYGATTLAQLATGGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTEVGSCRLPAGDGGIDPVSGQEHPYCGFYTQEQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPLSEWGVFPNLFNVEDSTVTFLENVLEEVIELFPAKYVHVGGDEAVKDQWEASKQVQQRMHALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPERRDFRDFLARLPAQLQRYRAWGLAYAQTPFEVGVDYTDSRAANTVTLSLANPLGYEVRYSTDGQPVTAQSPLYQQPLTTQLPANVQAAAFYQGQMLAARPTVADFSAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSVEVRAGRIPYYFQLAHDEPKRRFEKAKRAHGEMQVRRGDCSGRVLAEVPLPAKPDADGFVTLRATLPKGTQGSADLCINFTGDTRPAMWVLDEVTLGK
>NC_011071.1|WP_012512115.1|3857694_3858087_-|membrane-protein
MSHALPVIKPLQRPRLWAVLWALAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPMDAIANTIGVLAGMVTALTPLRDLLLRWRG

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Crispr_ID: NC_011071_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_9

4195300-4195410

Orphan

Consensus_repeat	Method
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011071_9

>merge|NC_011071|9|4195300-4195410|CRISPRCasFinder
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAACCTGCAGCCAGGCATGGCCTGGCTCTACTGCCGGTTGCCTGGGGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC

>NC_011071|9|9|4195300-4195410|CRISPRCasFinder
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	CTGCAGCCAGGCATGGCCTGGCTCTACTGCCGGTTGCCTGG
GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_012512314.1\|4188169_4188757_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NC_011071.1\|WP_006399171.1\|4201548_4201833_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NC_011071.1\|WP_006399164.1\|4199124_4199517_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NC_011071.1\|WP_012512312.1\|4186252_4187047_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_011071.1\|WP_006399039.1\|4193856_4194186_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|236512
NC_011071.1\|WP_012512324.1\|4203626_4204280_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_012512318.1\|4192610_4193093_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_011071.1\|WP_006399038.1\|4193151_4193826_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|136958
NC_011071.1\|WP_006399173.1\|4201829_4202219_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_011071.1\|WP_012512316.1\|4189606_4191082_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184146
NC_011071.1\|WP_012512322.1\|4199513_4201049_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NC_011071.1\|WP_012512315.1\|4188759_4189539_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377344
NC_011071.1\|WP_087943703.1\|4194321_4195254_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NC_011071.1\|WP_012512321.1\|4196293_4199125_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NC_011071.1\|WP_012512317.1\|4191374_4192328_-\|lipid-kinase-YegS	unknown	unknown	gnl\|CDD\|237281
NC_011071.1\|WP_012512323.1\|4202587_4203553_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|223604
NC_011071.1\|WP_012512320.1\|4195474_4195960_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NC_011071.1\|WP_006399169.1\|4201045_4201552_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NC_011071.1\|WP_012512313.1\|4187121_4188153_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_011071.1\|WP_006399178.1\|4204405_4204945_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_012512314.1\|4188169_4188757_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.36855e-130
NC_011071.1\|WP_006399171.1\|4201548_4201833_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	9.48908e-36
NC_011071.1\|WP_006399164.1\|4199124_4199517_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	6.51736e-64
NC_011071.1\|WP_012512312.1\|4186252_4187047_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	3.52545e-152
NC_011071.1\|WP_006399039.1\|4193856_4194186_-\|DnaJ-domain-containing-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	9.07086e-19
NC_011071.1\|WP_012512318.1\|4192610_4193093_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.94424e-15
NC_011071.1\|WP_006399038.1\|4193151_4193826_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|136958	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.	1.98461e-154
NC_011071.1\|WP_006399173.1\|4201829_4202219_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.0615e-32
NC_011071.1\|WP_012512316.1\|4189606_4191082_-\|anthranilate-synthase-component-I	gnl\|CDD\|184146	PRK13565, PRK13565, anthranilate synthase component I; Provisional.	0
NC_011071.1\|WP_012512322.1\|4199513_4201049_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_011071.1\|WP_012512315.1\|4188759_4189539_-\|SIMPL-domain-containing-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	6.98441e-18
NC_011071.1\|WP_087943703.1\|4194321_4195254_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NC_011071.1\|WP_012512321.1\|4196293_4199125_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NC_011071.1\|WP_012512317.1\|4191374_4192328_-\|lipid-kinase-YegS	gnl\|CDD\|237281	PRK13054, PRK13054, lipid kinase; Reviewed.	5.72999e-162
NC_011071.1\|WP_012512323.1\|4202587_4203553_-\|sodium:calcium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	1.24644e-42
NC_011071.1\|WP_012512320.1\|4195474_4195960_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	9.14672e-14
NC_011071.1\|WP_006399169.1\|4201045_4201552_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	2.1253e-61
NC_011071.1\|WP_012512313.1\|4187121_4188153_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0

>NC_011071.1|WP_087943703.1|4194321_4195254_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MPVPTTLLQSDLPGLPLRHRGKVRDVFDIPRERLPAGTPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFAKTAHLMPNHLTGIDVASVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSGWKDYQRTGKVSGIDLPDGLRQAEQLPEPIFTPSTKAAVGDHDENIDFDAMVKQVGAEMAERVRDATLRIYKFAADYARERGIILADTKFEFGTDADGRLYIMDEMLTPDSSRYWPADEYEVGTSPPSYDKQFVRDYLETLDWGKTAPGPTIPAEIIERTRAKYGEALQRLAGISVD
>NC_011071.1|WP_006399039.1|4193856_4194186_-|DnaJ-domain-containing-protein
MRWYGKLLGFIAGALLFRPNPLFGAVIGLLIGHAFDSDWFRLNKENPYRELGLTSEATDAEVERAYRKLISQYHPDKLGGAAPELQQQAEQKSRRINAAYDRIKTLRKR
>NC_011071.1|WP_006399038.1|4193151_4193826_-|ribulose-phosphate-3-epimerase
MSNCLIAPSILSANFARLGEEVDNVLAAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGVTAPIDVHLMVEPVDRIIPDFAEAGATYISFHPEASRHVHRTIQLIRSLGCKPGIVLNPATPVDILDWVLDDLDLVLLMSVNPGFGGQAFIPSALDKLRVVRKKIDASGRDIRLEIDGGVKADNIGEIAAAGADTFVAGSAIFNAKTSYQDVIAQMRANVAAAR
>NC_011071.1|WP_012512318.1|4192610_4193093_-|GNAT-family-N-acetyltransferase
MALLNIRSATVADAGLILQFIRELAIYEKAEHSVQTDEIGIAESLFGADATASALICEADGEAIGYAVYFYNYSTWLGRKGIYLEDLYVSPQKRGSGAGKALLKYIARQAVAEGCGRFEWSVLDWNTPAIEFYTAVGAKPQDEWTVYRLQGQALHDFANG
>NC_011071.1|WP_012512317.1|4191374_4192328_-|lipid-kinase-YegS
MTTPRWRLILNGKSAGNEELRDAVGHWRGQGVQLDVRVTWEDGDAERYVAEAIDHGVDVIVAAGGDGTLSAVAETLAHREEPADALPSLALIPMGTANDFATAAGIPTEPKAALALIGQATPHAIDLLRVDADGTPWWCANLASGGFGTQVTVETDAGLKKMLGGLAYVITGIAKLGRIEPINARLSGPDFAWEGDFIALGIGNGRQAGGGQQLCPQALIDDGQLDVTVLPELEGEVTATLGQMLKSGTQAALEQLATRARLPWLQVESERPLTLNLDGEPVQARHFRIECVPGRVRMHLPADCPLLGGQGLQGRQG
>NC_011071.1|WP_012512316.1|4189606_4191082_-|anthranilate-synthase-component-I
MNSHAQFLQQAAEGHTHIPVVREVLSDLDTPLSVYLKLADGPNTYLFESVEGGERFGRYSIIGLPARRVYAFHGHTLTVREDGQVVDTREVADPFAEVEALRSAHSVPKLEGLPGFTGGLVGWFGFECIGYIEPRLAPPAGRDELGTPDILLLDSNELAVFDNLKGRLYLIVHADPRVEGAFEQALARLDALTAKLRAPGAGYPAPLNSDVLDESDFVSGFTREGFVDAVQRSKEYIRAGDIFQVVLSQRLSVPFKARPVDVYRALRALNPSPYMYFLDVGDLQVVGSSPEILVRLQDGEVTVRPIAGTRPRGATPELDQALEAELLADPKERAEHLMLIDLGRNDAGRVSKAGTVEVGEQFVIERYSHVMHIVSEVTGQLQPGLSYADVLRATFPAGTVSGAPKIRALEVIRELEPIKRNVYAGSIGYIGWHGDADTAIAIRTAVIKDGRLYVQAGAGIVYDSDPDKEWDETMNKGRALFRAVAQAAKGL
>NC_011071.1|WP_012512315.1|4188759_4189539_-|SIMPL-domain-containing-protein
MKLLSALLWSSLLATMAPSAWAQANTIPSQPHLLVKGEARRVVMPDRFGLQLNIEETDMDADAARRRVQDNVARVLALFKQYKAVEGSVRADNLRIGPATRFEQSRQVFMGTQVSRQLRASFASVKQMQDVLGALKANENVQVSSVAPTYSGEVALRRELKGEAAAKTRESAQGLAKAYGTKVRGLYSISDVAPNFAYGIQAGQWPQLGEDGEYLDRISVTGSYAPASAPAPAERESIEAGPITYTENVYAIFLISDGT
>NC_011071.1|WP_012512314.1|4188169_4188757_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLWMIDNYDSFTYNLVQYLQTLGAEVKVVRNDAMSVDEIAAQKPERIVISPGPCTPNEAGVSLALIERLGPTTPILGVCLGHQGIGQVYGGTVIRAGNIMHGKTSPIRHEGKGVFAGLPDRYQATRYHSLVVDKHSLPDALEVTAWTENDDGSIEEIMGLRHRQFPVEGVQFHPESILTEHGHALLRNFLQRPAA
>NC_011071.1|WP_012512313.1|4187121_4188153_-|anthranilate-phosphoribosyltransferase
MSFSPQEALQRTIEHREIFFDEMVDLMRQIMRGDVSPMMTAAILTGLRVKKETIDEIAAAATVMREFALAVPVADSTHLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVAKHGNRSVSSKSGSADAVEALGAAIELQPAQVAAAIEQTGIGFMFAPIHHPSMKVVAPVRREMGVRTIFNILGPLTNPASAPSVLMGVFHPDLVGIQARVLRELGTERAMVVWGRDNMDEISLGAGTLVGELRDGKVREYEIHPEDFGIAMSASRNLRVDGPEQSIAMLRAVLDNTPGPALDIVALNAGAALYVAGVASDIGDGLARARAAIANGSARQRLQQYVDTTRTLVA
>NC_011071.1|WP_012512312.1|4186252_4187047_-|indole-3-glycerol-phosphate-synthase-TrpC
MSDILQTILARKAEEVAQRRAQRPLEDLQVAVASAPPVRGFVRALQAAVANGDPAVIAEVKKASPSKGVIRPDFRPADIAVSYEFGGASCLSVLTDVDFFQGADAYLQQARDACTLPVLRKDFVIDAYQVYEARVLGADCILLIVAALDDTQLATLSELAMSLGMDVLVEVHDIDELERALQVPAPMIGINNRNLRTFEVSLQTTLDMQKAVPRDRLLVTESGILGPQDVALMRDAGIHSFLVGEAFMRVEEPGEGLRQLFFAA
>NC_011071.1|WP_012512320.1|4195474_4195960_+|DUF962-domain-containing-protein
MQTTTELARPIDRYFASYSDDHRNVINQRIHVVAVPAILWSVVALLWCVPPLITWFQYGIWSAFAMFSAWCFYNKLSRSLGIGMLIQFFVFGCLCRLLEAEIGLHNLFWLAVGVFVVAWIAQFIGHTFEGRKPSFLTDLTYLLIGPAWVMAKAYRKLDWRY
>NC_011071.1|WP_012512321.1|4196293_4199125_+|monovalent-cation/H+-antiporter-subunit-A
MLPSLPLLLALPFLMAVAVAAFPRSSRSTAAWLAALAPLGGLAILGWLTPSVLDGQVVRTMVPWLPQIGLDFTLRLDGLAWMFAGLVLGIGALVVLYARYYLSSQDNAHRFYTYLLLFMGAMLGMVVSGNLLLLMIFWEMTSISSFLLIGFWSHRQDAREGARMALVITGGGGLALLGGVLLIGRIVGSFDLDVVLAAGEQIRASALYPYALFLVLAGIFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLHPALAGSDLFFYTVSGIGALTLLIGAWNAIFQHDLKGLLAYSTISHLGLITLLFGLSTPMAVVAGVFHILNHATFKASLFMAAGIIDHETGTRDMRKLGGLRRLMPFTSALAIIASLAMAGIPLLNGFLSKEMLFAEALTAGGGPGAMRTAVSIAALLAGVFGVAYSLRFVHDTFFGPGPHDLDRVPHEPPRWMKVPVELLVVICVAVGIAPALTVAPVLHAAAASILGNAMPEYSLAVWHGFNLPLAMSAIGVVGGVALYFGLRRLINLHGVTNTSPGRNVFHRQLDLLSAAAQRLTNGIANGSLQRMLLGLVLVAIVVAAAPFVANPASPNWTAPQPIPLLGWALWLVMMACAVATLRVYKQRLLAVLLVGGVGLMVALTFVFLSAPDLALTQLLVEMVTLVLMLLGMNYLPAQSGPERPRWRKRRDAVIAIIAGAGLGALAYTAMTLPPNTMAGELLARALPEAYGQNVVNVILVDFRGFDTFGEITVFGIAALVVHALLRRTRMAPEQIMPGPPIKLPVPADLAQIMFPLTLTVSIFLFLRGHNAPGGGFIAGLVLAVPLLIQYVIQGTASVESRFGFDYIRCIGMGLLIAILSGSASMLFGVPFLTSGHLDLHLPLIGEVPLASAIGFDIGVYLVVFGGAMLMLSMMATVKPSRTRTARKGEIDLQRRSARTGEMH
>NC_011071.1|WP_006399164.1|4199124_4199517_+|Na+/H+-antiporter-subunit-C
MELALASAIGVLTAIGVYLLLRARSFDVILGMTFLSYATNLLIFAGGRVVLGKAPVLQEGVDSNLGNYTDPLPQALVLTAIVIAFAMTAVSIVLAMRSRSDNHSDHVDAHEPDDDLQDEGVPPRQGEDRA
>NC_011071.1|WP_012512322.1|4199513_4201049_+|monovalent-cation/H+-antiporter-subunit-D
MNHLVILPILVPLLGAALSLFVEHRRYGPKVQRAVAWTSLSALALVVGLLFATTASGDISVYLLGDWPSRLGIALVADRLSAWMLLTTLLLAIPCLLHACSGWDRRAPHFHALFQFQLVGLNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLRMRIGLHYVVFNVTASTLFLIALGLLYASLGSLNMAELSQRIAEVPPAQLTLVKATMGLLLLVFCAKAALMPLYLWLPEAYSRAPAAVAALFAIMTKVGLYAVLRIQMLWFGDDAGAMAGYGRDWLLWAGVATLVLGGLGALAATRLRVLISYLVIVSAATLFIAFSVGTPQVLSAGLYYLPHSSFVAAALFLIADLIRRRRGGASDRKEVVAPMPGKETPAVLFLIAAVSVAGLPPLSGFLAKAALLAGMPAQYTGPVWTAVLVSSLLVIMGLTRGGIRLFWRVPPVDPDAPPPRKARLRRVELYAACILLAYGIGMTLAAAPLMRYTDATAAQLLQPGEYVQQLRATAPEIRQP
>NC_011071.1|WP_006399169.1|4201045_4201552_+|Na+/H+-antiporter-subunit-E
MTAQRSLFRRIIPSPMLSIMVVAFWLLMSDSFTVGQTVLGLVLGVVVPLFAARLDREFARIGTLRPLPKLLCVTLWDILMSNIRVALQVLGPEKNIHPGFIWLPLDIANIHGIAALTSMITLTPGTVSAALSEDRRFLLVHVLHLEDPQALIDTIKRRYEAPLMEIFP
>NC_011071.1|WP_006399171.1|4201548_4201833_+|K+/H+-antiporter-subunit-F
MTGFQIIQTTLVVCMHVVGLAMLLATWRLLRGPTVPDRILALDTLSVTAIAELMLFGMYLNSAIYFEAALVIAMLGFGSTVVLSKFVLRRDIVE
>NC_011071.1|WP_006399173.1|4201829_4202219_+|Na+/H+-antiporter-subunit-G
MITAIQIGLSILLLFGCFFILVGALGLVKLSTFFKRLHAPTKASTLGVGCVLVCSVCYHIFLGQDPQPRELLITVFLFITAPISAHMMAKAALSLLMETRPSLPGNEPAAEEQLPPPEPVREEEGSQGR
>NC_011071.1|WP_012512323.1|4202587_4203553_-|sodium:calcium-antiporter
MIAIAIAWFLLGLLLLALGGDSIVKAVSGLAQRFGASPFTAGLLLLGVTTSLPELAVNARALAVGQPELALGNAVGSSIVNLGLTLAVAAMAAPLLLRARLQTVLWWSLLAAGVVLILFGLDGGLARWEGGVLVAGFIIVQVVLLRRGRSESAEVQAAIAESALSRTSLPLNVLRVVIAALALYWGARLVVGAAADFGVALGWTPLLVGLLPVAIGTALPEVATAIAAARRGHGDMVMAHVLGSSVVNLLLVIGAMAVLQPLALPASFVRLELPALLAFALVLYPMLRGDLKISRGEGAILLVAFLGWFMLELLLVGAPGL
>NC_011071.1|WP_012512324.1|4203626_4204280_-|hypothetical-protein
MKHLPIAGLLLLSLTACGGQDKQGAAGSGSDTPAETAAATGPAQSTDPDLAARPANDRREDSPAHLEGFAGAKLGAGIAEVRSGFGTPLQGLGSDAAGKPLPVDDSNDGCYFLRPQNAEDPRLMIEGRKLVRYDVHSAAVIAPGGGKVGMTLGELQVLYPERGDVVPDKYDEKAQHLRVRPAQEGGAVIDFALGADGRVGAWRVGQTPQVDYVEGCG
>NC_011071.1|WP_006399178.1|4204405_4204945_+|hypothetical-protein
MQPRKTDLARTALQAHRAPLDMRQRRLLILCDGQRTIADLTGLLGQDAPAMVIQLVQAGYLSTGPAAPVPSPGPAAGSVAAPPAPAPLPPAATPVERRRSLVAARIYVLGILEMQRHPQAAALFRDLQQARAEDEVLQRLQSAMQMLPGLTSDGYCQRVRQRLLEALPLEHCDAFAEAA

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Crispr_ID: NC_011071_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011071_10

4202221-4202319

Orphan

Consensus_repeat	Method
CCCGGTAGAGGCCGACCTTGGCCGG	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NC_011071_10

>merge|NC_011071|10|4202221-4202319|CRISPRCasFinder
CCCGGTAGAGGCCGACCTTGGCCGGTACGGAGCCAACCGCATCCACGCATGGCGTGGATCTACCGACCGCAATGCCCGGTAGAGGCCGACCTTGGTCGG

>NC_011071|10|10|4202221-4202319|CRISPRCasFinder
CCCGGTAGAGGCCGACCTTGGCCGG	TACGGAGCCAACCGCATCCACGCATGGCGTGGATCTACCGACCGCAATG
CCCGGTAGAGGCCGACCTTGGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011071.1\|WP_006399302.1\|4211394_4212894_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NC_011071.1\|WP_006399038.1\|4193151_4193826_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|136958
NC_011071.1\|WP_012512329.1\|4209383_4210523_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006399184.1\|4207607_4208165_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_011071.1\|WP_012512322.1\|4199513_4201049_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NC_011071.1\|WP_012512324.1\|4203626_4204280_-\|hypothetical-protein	unknown	unknown	unknown
NC_011071.1\|WP_006399039.1\|4193856_4194186_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|236512
NC_011071.1\|WP_006399173.1\|4201829_4202219_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_011071.1\|WP_087943703.1\|4194321_4195254_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NC_011071.1\|WP_006399171.1\|4201548_4201833_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NC_011071.1\|WP_012512328.1\|4208393_4209365_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NC_011071.1\|WP_006399164.1\|4199124_4199517_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NC_011071.1\|WP_012512320.1\|4195474_4195960_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NC_011071.1\|WP_012512321.1\|4196293_4199125_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NC_011071.1\|WP_012512325.1\|4205027_4206326_-\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421
NC_011071.1\|WP_012512323.1\|4202587_4203553_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|223604
NC_011071.1\|WP_012512326.1\|4206428_4207499_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
NC_011071.1\|WP_012512330.1\|4210775_4211375_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379399
NC_011071.1\|WP_006399169.1\|4201045_4201552_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NC_011071.1\|WP_006399178.1\|4204405_4204945_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011071.1\|WP_006399302.1\|4211394_4212894_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	4.35864e-142
NC_011071.1\|WP_006399038.1\|4193151_4193826_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|136958	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.	1.98461e-154
NC_011071.1\|WP_006399184.1\|4207607_4208165_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.98166e-16
NC_011071.1\|WP_012512322.1\|4199513_4201049_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_011071.1\|WP_006399039.1\|4193856_4194186_-\|DnaJ-domain-containing-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	9.07086e-19
NC_011071.1\|WP_006399173.1\|4201829_4202219_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.0615e-32
NC_011071.1\|WP_087943703.1\|4194321_4195254_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NC_011071.1\|WP_006399171.1\|4201548_4201833_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	9.48908e-36
NC_011071.1\|WP_012512328.1\|4208393_4209365_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	3.9003e-67
NC_011071.1\|WP_006399164.1\|4199124_4199517_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	6.51736e-64
NC_011071.1\|WP_012512320.1\|4195474_4195960_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	9.14672e-14
NC_011071.1\|WP_012512321.1\|4196293_4199125_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NC_011071.1\|WP_012512325.1\|4205027_4206326_-\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
NC_011071.1\|WP_012512323.1\|4202587_4203553_-\|sodium:calcium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	1.24644e-42
NC_011071.1\|WP_012512330.1\|4210775_4211375_-\|thioredoxin-family-protein	gnl\|CDD\|379399	pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.	3.40762e-05
NC_011071.1\|WP_006399169.1\|4201045_4201552_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	2.1253e-61
NC_011071.1\|WP_012512326.1\|4206428_4207499_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	2.22376e-153

>NC_011071.1|WP_006399173.1|4201829_4202219_+|Na+/H+-antiporter-subunit-G
MITAIQIGLSILLLFGCFFILVGALGLVKLSTFFKRLHAPTKASTLGVGCVLVCSVCYHIFLGQDPQPRELLITVFLFITAPISAHMMAKAALSLLMETRPSLPGNEPAAEEQLPPPEPVREEEGSQGR
>NC_011071.1|WP_006399171.1|4201548_4201833_+|K+/H+-antiporter-subunit-F
MTGFQIIQTTLVVCMHVVGLAMLLATWRLLRGPTVPDRILALDTLSVTAIAELMLFGMYLNSAIYFEAALVIAMLGFGSTVVLSKFVLRRDIVE
>NC_011071.1|WP_006399169.1|4201045_4201552_+|Na+/H+-antiporter-subunit-E
MTAQRSLFRRIIPSPMLSIMVVAFWLLMSDSFTVGQTVLGLVLGVVVPLFAARLDREFARIGTLRPLPKLLCVTLWDILMSNIRVALQVLGPEKNIHPGFIWLPLDIANIHGIAALTSMITLTPGTVSAALSEDRRFLLVHVLHLEDPQALIDTIKRRYEAPLMEIFP
>NC_011071.1|WP_012512322.1|4199513_4201049_+|monovalent-cation/H+-antiporter-subunit-D
MNHLVILPILVPLLGAALSLFVEHRRYGPKVQRAVAWTSLSALALVVGLLFATTASGDISVYLLGDWPSRLGIALVADRLSAWMLLTTLLLAIPCLLHACSGWDRRAPHFHALFQFQLVGLNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLRMRIGLHYVVFNVTASTLFLIALGLLYASLGSLNMAELSQRIAEVPPAQLTLVKATMGLLLLVFCAKAALMPLYLWLPEAYSRAPAAVAALFAIMTKVGLYAVLRIQMLWFGDDAGAMAGYGRDWLLWAGVATLVLGGLGALAATRLRVLISYLVIVSAATLFIAFSVGTPQVLSAGLYYLPHSSFVAAALFLIADLIRRRRGGASDRKEVVAPMPGKETPAVLFLIAAVSVAGLPPLSGFLAKAALLAGMPAQYTGPVWTAVLVSSLLVIMGLTRGGIRLFWRVPPVDPDAPPPRKARLRRVELYAACILLAYGIGMTLAAAPLMRYTDATAAQLLQPGEYVQQLRATAPEIRQP
>NC_011071.1|WP_006399164.1|4199124_4199517_+|Na+/H+-antiporter-subunit-C
MELALASAIGVLTAIGVYLLLRARSFDVILGMTFLSYATNLLIFAGGRVVLGKAPVLQEGVDSNLGNYTDPLPQALVLTAIVIAFAMTAVSIVLAMRSRSDNHSDHVDAHEPDDDLQDEGVPPRQGEDRA
>NC_011071.1|WP_012512321.1|4196293_4199125_+|monovalent-cation/H+-antiporter-subunit-A
MLPSLPLLLALPFLMAVAVAAFPRSSRSTAAWLAALAPLGGLAILGWLTPSVLDGQVVRTMVPWLPQIGLDFTLRLDGLAWMFAGLVLGIGALVVLYARYYLSSQDNAHRFYTYLLLFMGAMLGMVVSGNLLLLMIFWEMTSISSFLLIGFWSHRQDAREGARMALVITGGGGLALLGGVLLIGRIVGSFDLDVVLAAGEQIRASALYPYALFLVLAGIFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLHPALAGSDLFFYTVSGIGALTLLIGAWNAIFQHDLKGLLAYSTISHLGLITLLFGLSTPMAVVAGVFHILNHATFKASLFMAAGIIDHETGTRDMRKLGGLRRLMPFTSALAIIASLAMAGIPLLNGFLSKEMLFAEALTAGGGPGAMRTAVSIAALLAGVFGVAYSLRFVHDTFFGPGPHDLDRVPHEPPRWMKVPVELLVVICVAVGIAPALTVAPVLHAAAASILGNAMPEYSLAVWHGFNLPLAMSAIGVVGGVALYFGLRRLINLHGVTNTSPGRNVFHRQLDLLSAAAQRLTNGIANGSLQRMLLGLVLVAIVVAAAPFVANPASPNWTAPQPIPLLGWALWLVMMACAVATLRVYKQRLLAVLLVGGVGLMVALTFVFLSAPDLALTQLLVEMVTLVLMLLGMNYLPAQSGPERPRWRKRRDAVIAIIAGAGLGALAYTAMTLPPNTMAGELLARALPEAYGQNVVNVILVDFRGFDTFGEITVFGIAALVVHALLRRTRMAPEQIMPGPPIKLPVPADLAQIMFPLTLTVSIFLFLRGHNAPGGGFIAGLVLAVPLLIQYVIQGTASVESRFGFDYIRCIGMGLLIAILSGSASMLFGVPFLTSGHLDLHLPLIGEVPLASAIGFDIGVYLVVFGGAMLMLSMMATVKPSRTRTARKGEIDLQRRSARTGEMH
>NC_011071.1|WP_012512320.1|4195474_4195960_+|DUF962-domain-containing-protein
MQTTTELARPIDRYFASYSDDHRNVINQRIHVVAVPAILWSVVALLWCVPPLITWFQYGIWSAFAMFSAWCFYNKLSRSLGIGMLIQFFVFGCLCRLLEAEIGLHNLFWLAVGVFVVAWIAQFIGHTFEGRKPSFLTDLTYLLIGPAWVMAKAYRKLDWRY
>NC_011071.1|WP_087943703.1|4194321_4195254_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MPVPTTLLQSDLPGLPLRHRGKVRDVFDIPRERLPAGTPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFAKTAHLMPNHLTGIDVASVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSGWKDYQRTGKVSGIDLPDGLRQAEQLPEPIFTPSTKAAVGDHDENIDFDAMVKQVGAEMAERVRDATLRIYKFAADYARERGIILADTKFEFGTDADGRLYIMDEMLTPDSSRYWPADEYEVGTSPPSYDKQFVRDYLETLDWGKTAPGPTIPAEIIERTRAKYGEALQRLAGISVD
>NC_011071.1|WP_006399039.1|4193856_4194186_-|DnaJ-domain-containing-protein
MRWYGKLLGFIAGALLFRPNPLFGAVIGLLIGHAFDSDWFRLNKENPYRELGLTSEATDAEVERAYRKLISQYHPDKLGGAAPELQQQAEQKSRRINAAYDRIKTLRKR
>NC_011071.1|WP_006399038.1|4193151_4193826_-|ribulose-phosphate-3-epimerase
MSNCLIAPSILSANFARLGEEVDNVLAAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGVTAPIDVHLMVEPVDRIIPDFAEAGATYISFHPEASRHVHRTIQLIRSLGCKPGIVLNPATPVDILDWVLDDLDLVLLMSVNPGFGGQAFIPSALDKLRVVRKKIDASGRDIRLEIDGGVKADNIGEIAAAGADTFVAGSAIFNAKTSYQDVIAQMRANVAAAR
>NC_011071.1|WP_012512323.1|4202587_4203553_-|sodium:calcium-antiporter
MIAIAIAWFLLGLLLLALGGDSIVKAVSGLAQRFGASPFTAGLLLLGVTTSLPELAVNARALAVGQPELALGNAVGSSIVNLGLTLAVAAMAAPLLLRARLQTVLWWSLLAAGVVLILFGLDGGLARWEGGVLVAGFIIVQVVLLRRGRSESAEVQAAIAESALSRTSLPLNVLRVVIAALALYWGARLVVGAAADFGVALGWTPLLVGLLPVAIGTALPEVATAIAAARRGHGDMVMAHVLGSSVVNLLLVIGAMAVLQPLALPASFVRLELPALLAFALVLYPMLRGDLKISRGEGAILLVAFLGWFMLELLLVGAPGL
>NC_011071.1|WP_012512324.1|4203626_4204280_-|hypothetical-protein
MKHLPIAGLLLLSLTACGGQDKQGAAGSGSDTPAETAAATGPAQSTDPDLAARPANDRREDSPAHLEGFAGAKLGAGIAEVRSGFGTPLQGLGSDAAGKPLPVDDSNDGCYFLRPQNAEDPRLMIEGRKLVRYDVHSAAVIAPGGGKVGMTLGELQVLYPERGDVVPDKYDEKAQHLRVRPAQEGGAVIDFALGADGRVGAWRVGQTPQVDYVEGCG
>NC_011071.1|WP_006399178.1|4204405_4204945_+|hypothetical-protein
MQPRKTDLARTALQAHRAPLDMRQRRLLILCDGQRTIADLTGLLGQDAPAMVIQLVQAGYLSTGPAAPVPSPGPAAGSVAAPPAPAPLPPAATPVERRRSLVAARIYVLGILEMQRHPQAAALFRDLQQARAEDEVLQRLQSAMQMLPGLTSDGYCQRVRQRLLEALPLEHCDAFAEAA
>NC_011071.1|WP_012512325.1|4205027_4206326_-|homogentisate-1,2-dioxygenase
MSPAITARGYQSGFGNEFATEAVAGALPVGQNSPQKVAHGLYAEQLTGTAFTAPRGSNRRSWLYRIRPAVTHGEFTPFAQSQLQCDFAAQPASPNQLRWSPLPLPELPTDFVEGLYTMGGNGSPDAHAGVGIHLYAANRDMVGRYFYDADGELLIVPQLGALRLLTELGVIEIEPQQIAVIPRGVRFRVELPDGPSRGYICENYGALLKLPDLGPIGSNGLANPRDFETPHAAFEDVDGDFELIAKFEGRLWRAPIDHSPLDVVAWHGNYAPYRYDLRRFNTIGSISHDHPDPSIFLVLHSPSDTPGTSNMDFAIFPPRWLVAQNTFRPPWFHRNIASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDAPTFDKASNADLSKPDVIKDTMAFMFETRAVIRPTAQALAAGHRQGDYQQCWNGLRNNYR
>NC_011071.1|WP_012512326.1|4206428_4207499_-|4-hydroxyphenylpyruvate-dioxygenase
MQVTTFENPMGIDGFEFVEFAAPAGRGQELHEYFRKMGFSAVLKHKQRPITVYRQGDVNFLVNEDPDSFASDFAEKHGPCACGFAIRFKKPGQEVYQTALGNGAEAIAFKPDSKAVSAPVIKGIGDCMLYLVDRYGSAGSIFDGDYELIAGAELRPKGFGLTFIDHLTHNLYFGNMQQWSDYYERLFNFREIRYFDIKGLKTGLVSKAMTAPDGIVRIPLNESSDPKSQINEYLDAYKGEGIQHIACFTENIYETVEAMRAQGVDFLDTPETYFDVIDQRVPNHGEDVARLAKNKILIDADPETHQRKLLQIFTQNCIGPIFFEIIQRKGNEGFGEGNFTALFESIERDQIRRGVL
>NC_011071.1|WP_006399184.1|4207607_4208165_+|winged-helix-turn-helix-transcriptional-regulator
MQGLDLPLIVTLETTSKVHRNMSPADPVSTRLRSSHVLLDLEQFLPYRLSVLSNRVSGNIAKLYGDRYGLAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIKRETHGDDRRRSVLALSAAGFEVYETIAPMVIEITRKLMSVLSDEEEQVLEKLILRLAGDGLERMGEGV
>NC_011071.1|WP_012512328.1|4208393_4209365_+|DUF1016-family-protein
MHRTINAELTLLYWRIGRRIHVDQMAGQRARYGELLFTRIAKALSAEFGTSFGEKSLRRMVQFSIAFADEQIVVSLIRQLSWTHFIALIPLADPLKHDFYAQMAGTEGWSVRTLRQRIDSMLYERTALSSQPEQTIADELAALRGNQQLSPGLVLRDPYVLDFLGLKDSWDEQDLESAILREMQGFLLELGTGFSFVARQKRIQIDGDDFHLDLLFYNRRLRRLIAIELKIGEFKPAYKGQMELYLRWLDRHEREDGEQAPLGIILCTGKKAGQIELLELDRSGIHVAEYLTTLPSREVLKQRLQTAMERARQQMENLPPSPL
>NC_011071.1|WP_012512329.1|4209383_4210523_-|hypothetical-protein
MHSDHAERLPEPASALAEGGADEGVTLPPQEALLDDAGTGGDTVELAPPRHRLPQIALPDNVVLKGAVQKLVEQKSRLDALAAEGQLAGLLPPEWQGHGVRAIELSTFIQGVLPFLQPGERGETAPARLPVRHVLGDDSRWGLDDVSEPKSLAWYLASDERATAGSKDVAEAYLVGALGLAWMQEGRSRPGFLRAMGQDSLAARVTMLGYPPAGELALYSVTAHGQPQIWCVHGRRRMRPLVAPWLSVPLLTAYGVPAPVAWPSSFPPVEAVAELLATARQGRALPEVDLGKVVAKIAEDAASDAWQPVSLLQLNTWSPRWHFFLGTFVGLPSLLLVAAALALPGAVEAATVAASLGFAGGAIAALAVPWIHARRKHLS
>NC_011071.1|WP_012512330.1|4210775_4211375_-|thioredoxin-family-protein
MRSKLGGAMVVVCAALIGACSQPQPPAVAEPTQPLDTRPTEPPVADPSEPVASGNTPVAADIAAIAGLGAQFDPARDPANDLATAKVEAQRGKKRILLEVGNAACERCHALDELVEGNGDLRRFRDAHYVWVKVNASDEQPNTAFFAQFPMMERDYPYLLVLDADGGLLVSQATGELRKGETFQPARVTAFLKQWAPDR
>NC_011071.1|WP_006399302.1|4211394_4212894_-|peptide-MFS-transporter
MSLNATANTPEPAVPDFKTMMGHPRPLWMLFMTEFWERFAFYGIRWALVLYIVAQFRDGSAAGEADASRIYGAYLALVYAAAIFGGYVADRVLGYQRSILTGAVIMAAGLFMISLPEEHLFKLGLATIIVGNGMFKPNISTMVGKLYGLKDERRDSGFTIFYMGINIGAMIAPVLTEYLARKVFGTSEMPSYKVVFIASGVGMLISLVWFYVGRAGLKGIGAPPAGAEGFGRVVMVLVGSLFAIPVAYFLLATGATALAWILGVMFAALAVLLLVEGIREGKVQRDRVIAMLIIFAFNVMFWMFFEQAGSSFTFLAENIVNRQMGEWTFPTAWFQSVNSVAIITLAPIIAWIWVALGRANPSIPRKFGLGLLFNGAAFALLMYALSQMVVDGKIPFWTLFMVYVIQSVGELCLSPIGLSMVTKLAPVRLVGFGMGGWFLSTGIGNNLSGIFAGVVSGEGGMTVESALKGYTFGFWALIGSGVVLFLVAPLINKLMHGVK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011071_10	10.1\|4202246\|49\|NC_011071\|CRISPRCasFinder	4202246-4202294	49	NC_011071.1	4202395-4202443	1	0.98

1. spacer 10.1|4202246|49|NC_011071|CRISPRCasFinder matches to position: 4202395-4202443, mismatch: 1, identity: 0.98

tacggagccaaccgcatccacgcatggcgtggatctaccgaccgcaatg	CRISPR spacer
tacggagccaaccgcatacacgcatggcgtggatctaccgaccgcaatg	Protospacer
***************** *******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011071_8	8.1\|3841725\|28\|NC_011071\|CRISPRCasFinder	3841725-3841752	28	NZ_CP048424	Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence	238673-238700	5	0.821
NC_011071_1	1.1\|750443\|29\|NC_011071\|CRISPRCasFinder	750443-750471	29	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	785164-785192	6	0.793
NC_011071_1	1.1\|750443\|29\|NC_011071\|CRISPRCasFinder	750443-750471	29	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	218754-218782	6	0.793
NC_011071_1	1.1\|750443\|29\|NC_011071\|CRISPRCasFinder	750443-750471	29	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	231612-231640	6	0.793
NC_011071_1	1.1\|750443\|29\|NC_011071\|CRISPRCasFinder	750443-750471	29	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	49948-49976	6	0.793
NC_011071_8	8.1\|3841725\|28\|NC_011071\|CRISPRCasFinder	3841725-3841752	28	NZ_CP022299	Acinetobacter johnsonii strain IC001 plasmid pIC001A, complete sequence	13387-13414	7	0.75

1. spacer 8.1|3841725|28|NC_011071|CRISPRCasFinder matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

aggttcatggcgtcggcggaataggtgc	CRISPR spacer
gggttcatggcatctgcggaatagccgc	Protospacer
.**********.** ********* .**

2. spacer 1.1|750443|29|NC_011071|CRISPRCasFinder matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

atcgcgcgcagcgcagaatgtgtggtccc	CRISPR spacer
atcgcgcgcggcgcataatgtgtcgaacg	Protospacer
*********.***** ******* *  *

3. spacer 1.1|750443|29|NC_011071|CRISPRCasFinder matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

atcgcgcgcagcgcagaatgtgtggtccc	CRISPR spacer
atcgcgcgcggcgcataatgtgtcgaacg	Protospacer
*********.***** ******* *  *

4. spacer 1.1|750443|29|NC_011071|CRISPRCasFinder matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

atcgcgcgcagcgcagaatgtgtggtccc	CRISPR spacer
atcgcgcgcggcgcataatgtgtcgaacg	Protospacer
*********.***** ******* *  *

5. spacer 1.1|750443|29|NC_011071|CRISPRCasFinder matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

atcgcgcgcagcgcagaatgtgtggtccc	CRISPR spacer
atcgcgcgcggcgcataatgtgtcgaacg	Protospacer
*********.***** ******* *  *

6. spacer 8.1|3841725|28|NC_011071|CRISPRCasFinder matches to NZ_CP022299 (Acinetobacter johnsonii strain IC001 plasmid pIC001A, complete sequence) position: , mismatch: 7, identity: 0.75

aggttcatggcgtcggcggaataggtgc	CRISPR spacer
gcgatcatggcgtcgccggaatagggag	Protospacer
. * *********** ********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

592505 : 600763

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012509980.1\|592505_593561_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-80	46.5
WP_012509981.1\|593575_594463_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.2e-97	58.5
WP_012509982.1\|594459_595017_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-44	50.0
WP_012509983.1\|595013_595952_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.6e-28	38.2
WP_012509984.1\|596070_597909_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.1e-135	44.6
WP_012509985.1\|598001_599405_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.6e-40	27.9
WP_012509986.1\|599416_600763_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.5e-28	26.2

DBSCAN-SWA_2

970230 : 1089683

108

Escherichia_phage(19.23%)

plate,transposase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004146319.1\|970230_971520_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-134	57.8
WP_012510194.1\|971662_974113_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.1e-222	52.2
WP_004146343.1\|974330_974603_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	7.7e-22	61.8
WP_012510195.1\|975494_977450_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_012510196.1\|977659_978859_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_012510197.1\|978855_979620_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_012510198.1\|979631_980276_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012510199.1\|980289_980742_+	ribonuclease HI	J9Q745	Salmonella_phage	2.9e-42	52.7
WP_004146409.1\|980746_981478_+	DNA polymerase III subunit epsilon	A0A1B2LRV5	Wolbachia_phage	1.4e-06	40.9
WP_004146411.1\|981547_982252_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_012510200.1\|983833_986848_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_012510201.1\|987139_987544_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	7.7e-18	35.3
WP_012510202.1\|987562_988609_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_012510203.1\|988629_989379_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_012510204.1\|989378_990146_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012510205.1\|990142_990532_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_004146694.1\|991035_991353_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_012510206.1\|991710_1002600_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_012510207.1\|1002657_1003101_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_050767029.1\|1003161_1004016_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_041864476.1\|1004672_1006736_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.3e-47	41.8
WP_004154630.1\|1006742_1007063_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_012510210.1\|1007174_1007774_+	recombination protein RecR	NA	NA	NA	NA
WP_004146872.1\|1007841_1008201_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_012510211.1\|1008281_1008809_-	Slp family lipoprotein	NA	NA	NA	NA
WP_012510212.1\|1008805_1010755_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_012510213.1\|1010747_1011692_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_012510214.1\|1011694_1012648_-	AAA family ATPase	NA	NA	NA	NA
WP_004146882.1\|1012690_1014526_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_012510215.1\|1014646_1015216_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_004146886.1\|1015329_1015839_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_004154640.1\|1015947_1016142_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_004146896.1\|1016233_1017211_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_012510216.1\|1017287_1018070_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_012510217.1\|1018238_1019183_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_004146899.1\|1019265_1020009_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-12	31.9
WP_012510218.1\|1020161_1020401_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_012510219.1\|1020544_1021807_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_012510220.1\|1021899_1023264_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_012510221.1\|1023461_1024523_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_012510222.1\|1024519_1025185_+	dTMP kinase	M1PSC7	Streptococcus_phage	7.9e-36	43.3
WP_012510223.1\|1025181_1026138_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_004146965.1\|1026134_1026488_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_012510224.1\|1026984_1027365_+	tautomerase family protein	NA	NA	NA	NA
WP_012510225.1\|1027396_1028470_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	4.8e-91	49.6
WP_012510226.1\|1028460_1028676_-\|tail	tail protein X	NA	NA	NA	NA
WP_012510227.1\|1028659_1029127_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	4.4e-09	30.4
WP_012510228.1\|1029129_1031601_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	2.0e-23	23.2
WP_005412456.1\|1031721_1032012_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_012510229.1\|1032092_1032596_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	5.2e-40	50.6
WP_012510230.1\|1032598_1033801_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A088FVH5	Escherichia_phage	2.7e-119	50.3
WP_012510231.1\|1033907_1034567_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	6.2e-17	32.9
WP_012510232.1\|1034568_1036539_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.6e-113	41.9
WP_012510233.1\|1036546_1037848_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	5.7e-46	51.7
WP_012510234.1\|1037840_1038737_-\|plate	baseplate J/gp47 family protein	V5YTH6	Pseudomonas_phage	1.2e-79	55.5
WP_005408332.1\|1038739_1039078_-	GPW/gp25 family protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_012510235.1\|1039130_1039721_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	1.5e-25	38.7
WP_012510236.1\|1039717_1040272_-	hypothetical protein	NA	NA	NA	NA
WP_157628458.1\|1040389_1040719_-	hypothetical protein	NA	NA	NA	NA
WP_012510237.1\|1040624_1041002_-	hypothetical protein	NA	NA	NA	NA
WP_012510238.1\|1040998_1041484_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	3.5e-41	55.0
WP_012510239.1\|1041480_1041831_-	hypothetical protein	NA	NA	NA	NA
WP_012510240.1\|1041827_1042277_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012510241.1\|1042611_1042995_-	hypothetical protein	NA	NA	NA	NA
WP_012510242.1\|1043147_1043786_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	4.0e-21	38.2
WP_012510243.1\|1043827_1044055_-	hypothetical protein	NA	NA	NA	NA
WP_012510244.1\|1044129_1044405_-	hypothetical protein	NA	NA	NA	NA
WP_012510245.1\|1044405_1046742_-	toprim domain-containing protein	D5LH15	Escherichia_phage	3.7e-136	43.1
WP_012510246.1\|1047227_1047452_+	hypothetical protein	NA	NA	NA	NA
WP_012510247.1\|1047463_1047718_+	hypothetical protein	NA	NA	NA	NA
WP_012510248.1\|1047934_1048330_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_087943707.1\|1048486_1050598_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012510250.1\|1050609_1052109_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_012510251.1\|1052118_1053252_-	MFS transporter	NA	NA	NA	NA
WP_012510252.1\|1053263_1054040_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_012510253.1\|1054198_1054846_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_012510254.1\|1054849_1055524_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012510255.1\|1055622_1057002_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_012510256.1\|1057135_1057999_+	DMT family transporter	NA	NA	NA	NA
WP_041864480.1\|1058038_1058974_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.8e-08	21.6
WP_012510258.1\|1059081_1060599_+	MFS transporter	NA	NA	NA	NA
WP_012510259.1\|1060582_1062673_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012510260.1\|1062772_1064158_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012510261.1\|1064135_1064819_-	response regulator transcription factor	NA	NA	NA	NA
WP_012510262.1\|1064972_1066151_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004147062.1\|1066155_1069257_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_012510263.1\|1069527_1069932_-	GFA family protein	NA	NA	NA	NA
WP_012510264.1\|1070103_1071078_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_012510265.1\|1071077_1073102_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_041864481.1\|1073225_1074647_-	MFS transporter	NA	NA	NA	NA
WP_004147068.1\|1074676_1075111_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_012510267.1\|1075183_1075786_-	short chain dehydrogenase	NA	NA	NA	NA
WP_012510268.1\|1075886_1076762_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012510269.1\|1076821_1077643_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_012510270.1\|1077661_1078339_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004147099.1\|1078426_1079464_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_005408369.1\|1079548_1080691_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_012510271.1\|1080843_1081827_+	aldo/keto reductase	NA	NA	NA	NA
WP_012510272.1\|1081882_1082782_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012510273.1\|1082875_1083085_+	DUF4287 domain-containing protein	NA	NA	NA	NA
WP_012510274.1\|1083181_1083631_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012510275.1\|1083724_1084432_+	YitT family protein	NA	NA	NA	NA
WP_012510276.1\|1084505_1085048_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_012510277.1\|1085044_1086832_-	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_004147177.1\|1086923_1087490_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_012510278.1\|1087482_1087977_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_004147181.1\|1087992_1088943_+	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA
WP_004147230.1\|1089191_1089683_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2220995 : 2226696

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012511040.1\|2220995_2221415_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.3e-39	62.5
WP_012511041.1\|2221411_2222152_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	6.7e-84	68.5
WP_012511042.1\|2222192_2222507_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005407578.1\|2222531_2223023_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.6e-25	40.3
WP_012511043.1\|2223043_2224102_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012511044.1\|2224105_2225092_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.3e-63	43.8
WP_012511045.1\|2225116_2226202_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.0e-88	56.1
WP_012511046.1\|2226162_2226696_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	8.0e-31	44.9

DBSCAN-SWA_4

2783038 : 2815370

Burkholderia_phage(35.71%)

terminase,tail,integrase,portal,head,capsid,protease,lysis

attL 2782871:2782886|attR 2787777:2787792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2782871:2782886	attL	NA	NA	NA	NA
WP_012511462.1\|2783038_2784232_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.3e-102	51.3
WP_157628466.1\|2784228_2784864_-	hypothetical protein	NA	NA	NA	NA
WP_157628467.1\|2784860_2785286_-	hypothetical protein	NA	NA	NA	NA
WP_012511464.1\|2785287_2786325_-	hypothetical protein	NA	NA	NA	NA
WP_041864550.1\|2786718_2787231_-	hypothetical protein	B7SYF7	Stenotrophomonas_phage	5.3e-32	46.4
WP_012511466.1\|2788119_2788734_-	hypothetical protein	NA	NA	NA	NA
2787777:2787792	attR	NA	NA	NA	NA
WP_157628468.1\|2789538_2790096_+	hypothetical protein	NA	NA	NA	NA
WP_157628480.1\|2790738_2791410_-	hypothetical protein	NA	NA	NA	NA
WP_012511469.1\|2791406_2791703_-	hypothetical protein	NA	NA	NA	NA
WP_012511470.1\|2791754_2795117_-	carbohydrate-binding CenC domain-containing protein	I7HDJ4	Xanthomonas_virus	2.8e-52	49.6
WP_012511471.1\|2795123_2799707_-	tape measure protein	A0A059VJZ1	Pseudomonas_phage	1.1e-46	52.4
WP_012511472.1\|2800125_2800869_-	hypothetical protein	NA	NA	NA	NA
WP_157628481.1\|2800891_2802865_-	hypothetical protein	NA	NA	NA	NA
WP_012511474.1\|2802861_2803077_-	hypothetical protein	NA	NA	NA	NA
WP_012511475.1\|2803154_2803529_-	hypothetical protein	NA	NA	NA	NA
WP_012511476.1\|2803650_2804124_-	hypothetical protein	NA	NA	NA	NA
WP_012511477.1\|2804202_2804565_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012511478.1\|2804561_2805065_-	HK97 gp10 family phage protein	Q8W6U1	Burkholderia_virus	1.6e-09	31.9
WP_012511479.1\|2805057_2805393_-\|head	phage head closure protein	NA	NA	NA	NA
WP_012511480.1\|2805389_2805869_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_012511481.1\|2805870_2806341_-	hypothetical protein	Q3HQT1	Burkholderia_phage	2.9e-08	59.2
WP_012511482.1\|2806402_2807653_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.1e-145	63.8
WP_012511483.1\|2807664_2808507_-\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	1.1e-103	73.0
WP_012511484.1\|2808484_2809747_-\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	1.0e-116	54.1
WP_157628469.1\|2809755_2811636_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.4e-154	49.9
WP_157628470.1\|2811592_2811970_-	hypothetical protein	A0A141GEV7	Brucella_phage	4.4e-07	36.6
WP_012511487.1\|2812121_2812445_-	HNH endonuclease	A0A2I7RZM4	Vibrio_phage	9.2e-06	55.0
WP_012511488.1\|2812444_2812735_-	hypothetical protein	NA	NA	NA	NA
WP_157628471.1\|2812897_2813230_-	DUF1064 domain-containing protein	Q3HQZ9	Burkholderia_phage	4.5e-40	69.1
WP_012511490.1\|2813362_2813959_-	hypothetical protein	NA	NA	NA	NA
WP_041864553.1\|2814115_2814574_-\|lysis	lysis protein	NA	NA	NA	NA
WP_012511492.1\|2814570_2814885_-	hypothetical protein	NA	NA	NA	NA
WP_012511493.1\|2814881_2815370_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	3.0e-69	79.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011071

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection