CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_009999	Shewanella baltica OS195 plasmid pS19502, complete sequence	0 crisprs	NA	0	1
NC_010000	Shewanella baltica OS195 plasmid pS19503, complete sequence	0 crisprs	NA	0	0
NC_009997	Shewanella baltica OS195, complete sequence	2 crisprs	RT,cas3,csa3,WYL,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	23	13
NC_009998	Shewanella baltica OS195 plasmid pS19501, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5058 : 64192

uncultured_Caudovirales_phage(15.38%)

integrase,transposase

attL 6078:6137|attR 59075:59139

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086012318.1\|5058_6217_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.2
6078:6137	attL	NA	NA	NA	NA
WP_006087354.1\|6436_7693_+	Y-family DNA polymerase	A0A218MNF2	uncultured_virus	1.4e-86	41.2
WP_011979505.1\|8212_8944_+	endonuclease	NA	NA	NA	NA
WP_011979506.1\|8958_9192_+	hypothetical protein	NA	NA	NA	NA
WP_011979507.1\|9582_11463_+	ParB N-terminal domain-containing protein	A0A0F7L836	uncultured_marine_virus	2.0e-12	34.9
WP_011979508.1\|11587_12043_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_011979509.1\|12044_12533_+	hypothetical protein	NA	NA	NA	NA
WP_011979510.1\|12563_12785_+	hypothetical protein	NA	NA	NA	NA
WP_012589009.1\|13460_14084_+	hypothetical protein	NA	NA	NA	NA
WP_011979512.1\|14085_14487_+	hypothetical protein	NA	NA	NA	NA
WP_011979513.1\|14856_15150_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011979514.1\|15130_15640_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011979515.1\|15752_15980_+	hypothetical protein	K7P880	Enterobacteria_phage	5.6e-10	41.1
WP_011979516.1\|16554_17553_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.1e-52	40.3
WP_011979517.1\|17601_17901_+	hypothetical protein	NA	NA	NA	NA
WP_006087379.1\|18458_18818_+	hypothetical protein	NA	NA	NA	NA
WP_012197956.1\|18838_24799_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_006087381.1\|24857_25037_-	hypothetical protein	NA	NA	NA	NA
WP_012197957.1\|25050_27177_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_012197958.1\|27196_27892_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_012197959.1\|27894_28428_-	hypothetical protein	NA	NA	NA	NA
WP_012197960.1\|28465_31285_-	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_012197961.1\|31287_32676_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_014358133.1\|32672_32849_-	hypothetical protein	NA	NA	NA	NA
WP_012197893.1\|32860_33298_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_012197962.1\|33311_34187_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_012197963.1\|34183_35998_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_012197964.1\|35994_36735_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_012197965.1\|36757_37771_-	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_012197898.1\|37757_38462_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_012592943.1\|38458_38830_-	TrbI F-type domain-containing protein	NA	NA	NA	NA
WP_012197967.1\|38831_41420_-	type IV secretion system protein TraC	NA	NA	NA	NA
WP_012197968.1\|41423_41867_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_012197969.1\|41899_43429_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_012197970.1\|43425_44241_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_012197971.1\|44240_44807_-	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_012197972.1\|44847_45150_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_012197973.1\|45153_45525_-	hypothetical protein	NA	NA	NA	NA
WP_012197974.1\|45579_45756_-	TraY domain-containing protein	NA	NA	NA	NA
WP_012197975.1\|45917_46562_+	LexA family transcriptional regulator	W6MVG5	Pseudomonas_phage	9.4e-18	28.1
WP_012197976.1\|47004_47739_+	hypothetical protein	NA	NA	NA	NA
WP_012592954.1\|48484_48640_+	Hok/Gef family protein	NA	NA	NA	NA
WP_011979484.1\|48974_49244_+	hypothetical protein	NA	NA	NA	NA
WP_080514264.1\|49332_49752_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_011979485.1\|50036_50411_-	hypothetical protein	NA	NA	NA	NA
WP_011839979.1\|50407_50977_-	ParA family protein	A0A1B3B0Z9	Gordonia_phage	3.5e-08	45.1
WP_012197978.1\|51701_52835_-	hypothetical protein	NA	NA	NA	NA
WP_012197979.1\|52844_54035_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_012197980.1\|54525_55485_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	7.1e-54	39.6
WP_150102380.1\|55640_55919_+	hypothetical protein	NA	NA	NA	NA
WP_011979489.1\|56065_56686_+	DUF2913 family protein	NA	NA	NA	NA
WP_011979490.1\|56778_57051_+	hypothetical protein	NA	NA	NA	NA
WP_011979491.1\|57377_57620_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	8.4e-20	60.0
WP_011979492.1\|57609_57894_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.2e-30	67.0
WP_011979493.1\|58092_59016_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.3e-148	81.8
WP_011979494.1\|59219_60248_+\|transposase	IS110 family transposase	NA	NA	NA	NA
59075:59139	attR	NA	NA	NA	NA
WP_086012321.1\|60471_61649_-\|transposase	IS3-like element ISSba5 family transposase	Q716C2	Shigella_phage	1.2e-119	65.5
WP_011979497.1\|63319_64192_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-40	37.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009997

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CRISPR-Cas detection and classification

Crispr_ID: NC_009997_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009997_1

3602727-3602801

Orphan

Consensus_repeat	Method
CGCTTACAGATAACGGTAAAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009997_1

>merge|NC_009997|1|3602727-3602801|CRISPRCasFinder
CGCTTACAGATAACGGTAAAAGCAAAGCTAAGAACGTTGACGGAACGCTCCGCTCACAGATAACGGTAAAAGCAA

>NC_009997|1|1|3602727-3602801|CRISPRCasFinder
CGCTTACAGATAACGGTAAAAGCAA	AGCTAAGAACGTTGACGGAACGCTC
CGCTCACAGATAACGGTAAAAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009997.1\|WP_006085578.1\|3596971_3597433_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|100048
NC_009997.1\|WP_006085583.1\|3599879_3600629_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_009997.1\|WP_006085581.1\|3598787_3599867_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NC_009997.1\|WP_006085593.1\|3609263_3610367_-\|response-regulator	unknown	unknown	gnl\|CDD\|381107
NC_009997.1\|WP_190273456.1\|3600629_3601619_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	unknown	unknown	gnl\|CDD\|274398
NC_009997.1\|WP_006085590.1\|3603488_3605975_-\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224512
NC_009997.1\|WP_006085587.1\|3601691_3602654_-\|LPS-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226288
NC_009997.1\|WP_006085575.1\|3594059_3594596_-\|transferase	unknown	unknown	gnl\|CDD\|100047
NC_009997.1\|WP_150102377.1\|3612377_3612818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NC_009997.1\|WP_012197379.1\|3594619_3595870_-\|O-antigen-translocase	unknown	unknown	gnl\|CDD\|240530
NC_009997.1\|WP_006085592.1\|3607648_3609154_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NC_009997.1\|WP_006082379.1\|3614507_3614906_-\|DUF2802-domain-containing-protein	unknown	unknown	gnl\|CDD\|378523
NC_009997.1\|WP_190273466.1\|3597410_3597833_-\|FdtA/QdtA-family-cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380426
NC_009997.1\|WP_006085577.1\|3595866_3596970_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|366433
NC_009997.1\|WP_006085591.1\|3606666_3607173_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|131010
NC_009997.1\|WP_012197381.1\|3597834_3598710_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_009997.1\|WP_006082378.1\|3614130_3614439_+\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|225166
NC_009997.1\|WP_006082380.1\|3615135_3615630_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NC_009997.1\|WP_006085595.1\|3610488_3611274_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_009997.1\|WP_006085588.1\|3602930_3603290_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395

Protein	Function_ID	Function_description	E-value
NC_009997.1\|WP_006085578.1\|3596971_3597433_-\|N-acetyltransferase	gnl\|CDD\|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	7.07725e-62
NC_009997.1\|WP_006085583.1\|3599879_3600629_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.93513e-34
NC_009997.1\|WP_006085581.1\|3598787_3599867_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NC_009997.1\|WP_006085593.1\|3609263_3610367_-\|response-regulator	gnl\|CDD\|381107	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains. Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.45408e-51
NC_009997.1\|WP_190273456.1\|3600629_3601619_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	7.9493e-101
NC_009997.1\|WP_006085590.1\|3603488_3605975_-\|SLBB-domain-containing-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	5.31925e-27
NC_009997.1\|WP_006085587.1\|3601691_3602654_-\|LPS-biosynthesis-protein	gnl\|CDD\|226288	COG3765, WzzB, Chain length determinant protein [Cell envelope biogenesis, outer membrane].	7.46059e-13
NC_009997.1\|WP_006085575.1\|3594059_3594596_-\|transferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.16692e-36
NC_009997.1\|WP_150102377.1\|3612377_3612818_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00376497
NC_009997.1\|WP_012197379.1\|3594619_3595870_-\|O-antigen-translocase	gnl\|CDD\|240530	cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.13083e-149
NC_009997.1\|WP_006085592.1\|3607648_3609154_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.47896e-151
NC_009997.1\|WP_006082379.1\|3614507_3614906_-\|DUF2802-domain-containing-protein	gnl\|CDD\|378523	pfam10975, DUF2802, Protein of unknown function (DUF2802). This bacterial family of proteins has no known function.	2.51546e-21
NC_009997.1\|WP_190273466.1\|3597410_3597833_-\|FdtA/QdtA-family-cupin-domain-containing-protein	gnl\|CDD\|380426	cd20292, cupin_QdtA-like, sugar 3,4-ketoisomerase QdtA and related proteins, cupin domain. This family includes cupin domains of several bacterial proteins homologous to sugar 3,4-ketoisomerases. Thermoanaerobacterium thermosaccharolyticum QdtA catalyzes a key step in the biosynthesis of these sugars, the conversion of thymidine diphosphate (dTDP)-4-keto-6-deoxyglucose to dTDP-3-keto-6-deoxyglucose. In Aneurinibacillus thermoaerophilus, TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase (also known as FdtA) is involved in the biosynthesis of dTDP-Fucp3NAc (3-acetamido-3,6-dideoxy-alpha-d-galactose), which is part of the repeating units of the glycan chain in the S-layer. Shewanella denitrificans bifunctional ketoisomerase/N-acetyltransferase (also known as FdtD) is involved in the third and fifth steps in the production of 3-acetamido-3,6-dideoxy-alpha-d-galactose or Fuc3NAc; the C-terminal cupin domain harbors the active site responsible for the isomerization reaction. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.1798e-66
NC_009997.1\|WP_006085577.1\|3595866_3596970_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|366433	pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.	5.22521e-140
NC_009997.1\|WP_006085591.1\|3606666_3607173_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|131010	TIGR01955, Transcriptional_activator_rfaH., transcription elongation factor/antiterminator RfaH. This model represents the transcription elongation factor/antiterminator, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes. [Transcription, Transcription factors].	1.40008e-81
NC_009997.1\|WP_012197381.1\|3597834_3598710_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_009997.1\|WP_006082378.1\|3614130_3614439_+\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	3.89949e-27
NC_009997.1\|WP_006082380.1\|3615135_3615630_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	7.24001e-52
NC_009997.1\|WP_006085595.1\|3610488_3611274_-\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	4.44122e-92
NC_009997.1\|WP_006085588.1\|3602930_3603290_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	7.89563e-42

>NC_009997.1|WP_006085587.1|3601691_3602654_-|LPS-biosynthesis-protein
MSNEINKYIQDAKFPPAVQDDEIDLRELFSVIWQGKWLIIAITAVFAIGSVVFAIMQPNIYKSEALLASASAEQGGNLSALASQFGGLASLAGVNLGGKGGTDKTQLAIEVLKSRQFTSDFIQKHNILADLMAAEMWDRDADKLIYDPELYNEQTNTWVRDIEPPFKPEPSMQEAYKEFSKIFSANTDKETGMVTLSVEHLSPTVAEQWVTWLIEDINKVMKERDVAEANRSSEFLNKQIALTNVADIRTILYKLVEEQAKTIMFAEVRDEYVFKTIDPAFAPEEKAKPKRALICVLGTIFGGMLGVMFVLVRHFIRKED
>NC_009997.1|WP_190273456.1|3600629_3601619_-|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase
MNIRVNETVDTEEFQPIKTVIKRFKSKRQVLTQEVIYVYCPKDRELEIGEIIDDYSFDMVVNDYSITDLSCKVICHFESARLTKEQRQFLVKATELGAWVEPLVSYLDERLGYTEVRLLHSGYFLHQKAFSILSTKRTQLAKRVIDLFAALLLCTIAIPLGLLTALAIKLESPGPVFYKQRRTGQYNDEFEVIKFRSMRNDAEKSGAQWASQNDARVTKVGNFIRKTRIDELPQIINILKGEMSIVGPRPEREVFIAELEKEIPYYRFRHAVKPGVTGLAQVSYPYGASVEDAVWKHKYDIYYIKHHSTLLDIKILLKTVKVVLFGMGR
>NC_009997.1|WP_006085583.1|3599879_3600629_-|glycosyltransferase-family-2-protein
MEYQPLVSIIMPSYNSVRTIAESIESVIAQTYKNWELLITDDVSVDDTKDIIRCYCEKDKRIKLFELDTNSGAGASRNNSIGNSSGDYIAFLDSDDIWLPNKLMLQIEFMEKNNILLSYSAYQKFSALGDGGIVMPPNSVSYSELLTGNVIGCLTAIYNAKVLGKRYMPLIRKRQDMGLWLSILKDVDKAICIPNVLAKYRIDTGMTQNKFNILKWQWAFYREVIGLSFIKSAKCFILYAFKGFIKSRI
>NC_009997.1|WP_006085581.1|3598787_3599867_-|dTDP-glucose-4,6-dehydratase
MKVLVTGGAGFIGSAVVRHIICNTQDSVINVDKLTYAGNLESLTSVADNARYTFEKVDICDRGELDRIFLQYQPDAIMHLAAESHVDRSITGPSDFIQTNIIGTYTLLEAARHYWIQLDSERKAAFRFHHISTDEVYGDLPHPDEHEGQVVNQELPLFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGKVGETYNIGGHNEKRNLEVVQTICSILDVLMPKGTPYAEQITYVTDRLGHDRRYAIDASKMSAELNWQPQETFETGLLKTVEWYLANQEWCQHIQDGTYQRERLGI
>NC_009997.1|WP_012197381.1|3597834_3598710_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPISVLMLAGIREILIITTPGDQSSFERLLGDGSYFGINIEYAVQATPDGLAQAFIIGEEFIGNDNVCLALGDNIFWGQGFSPILKKAAARPTGASVFGYQVKDPERFGVVEFDQDLKAISIEEKPLKPKSNFAVTGLYFYDNRVVNIAKNVKPSERGELEITSINQAYLEMGELNVELLGRGFAWLDTGTYESLLEAASFVETIEKRQGYKIACLEEIAWRNKWLTDVQIIAAANQMAKNSYGQYLFDLLGKQNG
>NC_009997.1|WP_190273466.1|3597410_3597833_-|FdtA/QdtA-family-cupin-domain-containing-protein
MSLINIINFPVLGDGRGTLVALEANRQIPFEIKRVYYIYGTAQGVARGFHAHKALKQVAICLKGSCRFVMDDGKDKQEVILAKPDKGLLIDAMQWHEMYDFSNDCVLMVLADQVYDESDYIREYSKFIEAVNNHVHSSAK
>NC_009997.1|WP_006085578.1|3596971_3597433_-|N-acetyltransferase
MFIHQLSDVQSSKIGDGTRVWQFAVVLKEATIGRDCNICAHTLIENDVVLGDNVTVKSGVYIWDGTNIGNNVFIGPCATFTNDKMPRSKVYPDTFSRITIEDHASIGANATLLPGITIGKHAMVGAGSVVTKDVPAYAVVVGNPARIIKYIEQ
>NC_009997.1|WP_006085577.1|3595866_3596970_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MINFLDLKAINNQYQQELKEACARVIDSGWYIMGNELAQFETEFAAYCGTKHSIGVANGLDALILTLRAWKVLGKLQAGDEVIVQANTYIASVLAITENDLVPVLVEPNPGSYNLDPETLAAAITPKTKVILPVHLYGQLSPMPEIMAIACAHNLLVLEDCAQSHGAEINGKRAGNWGDAAGFSFYPGKNLGALGDAGAITTNDDELAQTLKALRNYGSHKKYENLYQGVNSRLDEIQAAMLRVKLRHLDSETARRQHIAQTYRTNISNPLITLPQVNEELAHVWHLFVVSCEQREVLQQFLASRGIQTLIHYPIPPHKQHAYSHYADLQLPLTELIHQQVLSIPLDPTMSDAAVKQVIAAMNEFAG
>NC_009997.1|WP_012197379.1|3594619_3595870_-|O-antigen-translocase
MKRLLKVTAMTGLLTLLRMAMGFVIAKVVAIYTGPTGLAMLGQVQSLVGSLNGIINAPAGSGVVRFTAENKEQGFDACAPWWRAALQWVLIISAIAIPLGLLFAKPLAIGLFQDASLAWVIVVTVSVLPFAAIGTLCNSVINGQQLYRRYVGLGMLSALISGSVMLSMIAWQNIEGALLAAAVQAALIGVVMLIANLRQPWFKLRYWWGAVEPKARKDIGKYMLMAITSALTVPVSLILVRNILIDQVGWDATGQWQAVYKISEVYLGVITMALGTYYLPRLSSLTGVDAIVSEIHKTARVIIPIVATMALAVYLLRDVAISLLFTEAFRSARELFAIQLTGDVIKIASWLYAYPMLSRGATKWFMGTEILFSLSFVALTYLFVANMGLKGATVAYLVNYSVCFLSIYLNVKRFAR
>NC_009997.1|WP_006085575.1|3594059_3594596_-|transferase
MFNILYKLKLLPNVICVGKVGVIQSLKLEGKGKITLDDGCVLGVYPSPSLYHGEFYLEARSSTAEITIGKRVYINNNAIIIADKTAIAIGDDTLIGPNFICFDSNFHSLHPAKRLSSDYRCKPVNIGRNVFIGANVTILQGVSIGDNSVIGTGSVISQNIPANVIVKIGKALEIFDLK
>NC_009997.1|WP_006085588.1|3602930_3603290_-|four-helix-bundle-protein
MKFQKLEVWQLSYELSSSIYIATKDLRDWGFRDQITRSGLSVPSNIAEGMERYGAKEQIQFLYIAKASLAELITQAMIGKDIGYLEPNYVDELLIKTERLSAMLAGLIKSIKGRNSENK
>NC_009997.1|WP_006085590.1|3603488_3605975_-|SLBB-domain-containing-protein
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITGAGATATVVENPTVVTPRATKNNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQYTLTVGRDGAIQFPNLGPISLVGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQALFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSVSVMGEVRRPAIYELKNNETMADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTENVGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQWTKGLTVADLLPSIWGDLTISADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKPIIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELTRQNVSEQNGVSIEHVQLSLDQVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVKFPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVKDKEQLELSKLADELRREIAAKALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPATNQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFWFSGGSAIEPGDTIVVPLDTEYKDNLTLWSQVTGIIYNTAVAVSVISGL
>NC_009997.1|WP_006085591.1|3606666_3607173_-|transcription/translation-regulatory-transformer-protein-RfaH
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPEQSVERVCG
>NC_009997.1|WP_006085592.1|3607648_3609154_+|peptide-MFS-transporter
MSVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSDGGHGLGWTQAEALSLYGTFTGLVYLTPLIGGWLADNVLGQRKAIYFGGALMAAGQFLLAAPHSWIPGLETTVFYIGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINLGAALSGFIVAWAYTSFGHATIVDGQEVFVNNWQAGFFCAGVGMIFSLIIQFLFAQKYLGDIGRVPAAKLEKQKAEEKGEVRKEPLTKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNEFTDRMVGSFEVPTTWFQSLNAIFIVLFAPVIASIWIRLGKNEPNSPVKFALGLFLLAIGFLFMIGAVMQMGGDASVKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGAWFLFVAAANKIGGVVGSFIGHGGAKEEQLANAMAIFSGIAITAALSGIILYFMADKLVDWMHGAESKHQTEAEVLESEIAVTAEHEAIKR
>NC_009997.1|WP_006085593.1|3609263_3610367_-|response-regulator
MALNGVAVLLVEDDPVFRQIVASFLDTRGAQVTQACDGEEGLSLFKSQHFDIVLADLSMPKLGGLDMLKEMTRLAPLVPSVVISGNNVMADVVEALRIGASDYLVKPVSDLFIIEQAIKQSLYCSYIDDTQAADFEALSHQELSDNLALLEQSVAAAKQVQQQLFPASNISYPAAKVDYSLYKNSDISSYFIDSTMVGSDHLIMYMAHLYPEDNRAAFACVLLRSFVNQKLKDFRNGQSQSIIEPFNMMSYLNERLVKSGLDIKADMIYVSIELTKFRAAIAQAGKGLRCYLRNDEGLSPLALSESLQLGVLDWGKPSIQFRSILPQEQLCIATSEPEHKQALLENKFKGLVYDAAMPEGGFLQLSL
>NC_009997.1|WP_006085595.1|3610488_3611274_-|VacJ-family-lipoprotein
MKLKWMGLSLGLMLLPKVQAAEVPVSDTIQQEAPAKVQISYDDPRDPFEGFNRAMWDFNYLFLDRYLYRPVAHGYNDYIPMPAKTGVNNFVQNLEEPSSLVNNVLQGKWGWAANAGGRFTINSTVGLLGVIDVADMMGMSRKQDEFNEVLGYYGVPNGPYFMAPFAGPYVVRELASDWVDGLYFPLSELTIWQTIVKWGLKNLHSRASAIDQERLVDNALDPYAFVKDAYLQHMDYKVYDGNVPQKQDDDELLDQYMQELE
>NC_009997.1|WP_150102377.1|3612377_3612818_+|hypothetical-protein
MGLFKFAKFTDAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGNAGN
>NC_009997.1|WP_006082378.1|3614130_3614439_+|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MSEESEPKQAVALSYDGRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFLQLLELGEEIPKELYLLIAELIAFVYMLDGKFPEQWNNMHQKIVEKA
>NC_009997.1|WP_006082379.1|3614507_3614906_-|DUF2802-domain-containing-protein
MGDEFLIAALVYVIACLGLVLFLQKQLSKLRSKVEALTVLVKEGDRQRESFKRELQELRSGTIGVGRRVIELEKRLLQQSERIEETTQQDPQAKLYTRAMKMVALGAGVDELIKECELPKAEAELLIRLHRK
>NC_009997.1|WP_006082380.1|3615135_3615630_-|chemotaxis-protein-CheW
MKDTRNVAAVAASKDDAVLQWVTFKLDHETYGINVMQVQEVLRYTEIAPVPGAPYYVLGIINLRGNVVTVIDTRSRFGLQSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTEESAKFIQGVSNRDNELLILVDLDKLLSDEEWAELTQI

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Crispr_ID: NC_009997_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009997_2

3981830-3984902

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRISPRCasFinder
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	PILER-CR

51 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NC_009997_2

>merge|NC_009997|2|3981830-3984902|CRISPRCasFinder,CRT,PILER-CR
TTTATGAACAGCCTGTATGGCATTGAACAATCGCATACTGATGAATCTCTGAGCTGCCTGTGCGGCGGTGAACGAAGCGTTCGATCCGTTTGAAGATTTTAACGATTTCTAAGCCGCCTGTGCGGCGGTGAACAAACTAGCATTCCTATAATTAACTTCTTGCGCTTTCTAAGCCGCCTGTGCGGCGGTGAACCATTAAAATCAAATTCAAGGAGGTGGACTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACAGCTTAAGGCTTCACCTGCAAAAATCTCTCAGTTTCTAAGCCGCCTGTGCGGCGGTGAACGGCAGAGGCTGAGTTATGCGCCATTTGATAACTTTCTAAGCCGCCTGTGCGGCGGTGAACGCCAACACCATCAACACCATCCTGACCATCTATTTCTAAGCCGCCTGTGCGGCGGTGAACTTTTGGAATATCTTTCAATGCATGGCCATTACTTTCTAAGCCGCCTGTGCGGCGGTGAACCTCCCCCCGCGTCTAACACCCGCACCCCGTCTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAGGCGTCACCCAAAACACTGCGGCTATTCATTTCTAAGCCGCCTGTGCGGCGGTGAACTTTAGCGTCTATCTACCGTGGCATGACCTATTTTTCTAAGCCGCCTGTGCGGCGGTGAACGATCCAACGCCAAACCATTGGCCGCGCCAATGTTTCTAAGCCGCCTGTGCGGCGGTGAACATGGTAGGTGCGAGGCACTCGAAAGCGCCGCCTTTCTAAGCCGCCTGTGCGGCGGTGAACTTGCGCCGAACTTCAAACTGTTTTTGCCAGCTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAAGACTGGTTTATTGGCGACGGTTTTAAAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTTTCTCGCCATTGTCGTTGTCCTGTTTTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTTATACCCTATATCCTGCTCCACTATATACAATTTCTAAGCCGCCTGTGCGGCGGTGAACCGATTTGGGCGGTGCATTATGTGCCAAACGTATTTCTAAGCCGCCTGTGCGGCGGTGAACGGCCATGGTGCGTGGCCATGGTGTGTGGCCATTTTCTAAGCCGCCTGTGCGGCGGTGAACTTACAGACCAACGCCTGATACCTTGTCCGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACGCTATCATGACAAAATAACGCATAATTATGCGTTTCTAAGCCGCCTGTGCGGCGGTGAACCCATTGAGGCGGAAGTAACGACCGCCATGATCTTTCTAAGCCGCCTGTGCGGCGGTGAACGAACCAGCTTATCGCGTTTTTCGTCCGTCAGCTTTCTAAGCCGCCTGTGCGGCGGTGAACACAGCGACCCCACGTATTTTCTCGCACTAAATTTTCTAAGCCGCCTGTGCGGCGGTGAACTTCGCCCTTATTTATCTGCTCTGTGACGTACTTTTCTAAGCCGCCTGTGCGGCGGTGAACACTCCTCCAAATAATCCACATATTACCACACTTTTCTAAGCCGCCTGTGCGGCGGTGAACGCGCAATACAAGGGTGATTGTGCGTTATCAAGTTTCTAAGCCGCCTGTGCGGCGGTGAACTAAACGGTTATACATTTTATACCAGCAGTTTTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAGCCATACAGTCAGGAAGTGATATTGACGATTTCTAAGCCGCCTGTGCGGCGGTGAACAATTCACCGGCCATTTCTTATAATTCAGCTCATTTCTAAGCCGCCTGTGCGGCGGTGAACGAGGGTCGCAAGGCTTGACTCCATGCGGGATATTTCTAAGCCGCCTGTGCGGCGGTGAACGTAAATCGTTTTTGTCGGTTCGTGGTAATACTTTTCTAAGCCGCCTGTGCGGCGGTGAACAGGTTAGAAATAAATGAAACTCTTTTATCACCTTTCTAAGCCGCCTGTGCGGCGGTGAACTAATGTCGATGAAATATCAGCGGCTATCAAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTGTTGACTTGTTGGTCACTTTTTTTATTACTTTTCTAAGCCGCCTGTGCGGCGGTGAACGGAATACAGTTAAGGGGTATATCAACAACAACTTTCTAAGCCGCCTGTGCGGCGGTGAACCAGTTGGGACTTTCTCAGCGGACTCTGCAAACTTTCTAAGCCGCCTGTGCGGCGGTGAACCACCTTAGAAAATTCATGGGGCTTCATCTTGTTTTCTAAGCCGCCTGTGCGGCGGTGAACATGGTGCAGTAGACGTAACAACAATACTTAGATTTCTAAGCCGCCTGTGCGGCGGTGAACAAGAGTTTCTAGAGTTAAAGGTTAATGAAAAATTTCTAAGCCGCCTGTGCGGCGGTGAACATTTATTTCTAACCTATCACTGCTTGGATATTTTTCTAAGCCGCCTGTGCGGCGGTGAACGCAATACTCCCAGACTGGGGCATGGGTTAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACGATTTCATTTGAAACTGCTTATAATGTTGAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCGTGTTTGGGTGCGTGACTCTCCTGCTTTGATTTTCTAAGCCGCCTGTGCGGCGGTGAACTTACAGACCAACGCCTGATACCTTGTCCGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACGTCATGCGCAGTTATTGGACAAGAACGTCGCATTTCTAAGCCGCCTGTGCGGCGGTGAACAGTGAGACTAGCCGCCAGTTCACTATCAGTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTTCACCCTTATTTATCTGCTCTGTGACGTACTTTTCTAAGCCGCCTGTGCGGCGGTGAACAGTTCTTCACGGTCTACCCCAGCCATATCGTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAAACTGTGACTGAAGAGTTTCTAGAGTTAAATTTCTAAGCCGCCTGTGCGGCGGTGAACAATATTGGTTCGGCCATGACTGTTGACTTGTTTTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009997|2|2|3981830-3984902|CRISPRCasFinder
TTTATGAACAGCCTGTATGGCATTGAAC	AATCGCATACTGATGAA
TCTCTGAGCTGCCTGTGCGGCGGTGAAC	GAAGCGTTCGATCCGTTTGAAGATTTTAACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAACTAGCATTCCTATAATTAACTTCTTGCGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATTAAAATCAAATTCAAGGAGGTGGACTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGCTTAAGGCTTCACCTGCAAAAATCTCTCAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCAGAGGCTGAGTTATGCGCCATTTGATAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAACACCATCAACACCATCCTGACCATCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTGGAATATCTTTCAATGCATGGCCATTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTCCCCCCGCGTCTAACACCCGCACCCCGTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGGCGTCACCCAAAACACTGCGGCTATTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTAGCGTCTATCTACCGTGGCATGACCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATCCAACGCCAAACCATTGGCCGCGCCAATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTAGGTGCGAGGCACTCGAAAGCGCCGCC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCGCCGAACTTCAAACTGTTTTTGCCAGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAGACTGGTTTATTGGCGACGGTTTTAAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTCTCGCCATTGTCGTTGTCCTGTTTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATACCCTATATCCTGCTCCACTATATACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGATTTGGGCGGTGCATTATGTGCCAAACGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCATGGTGCGTGGCCATGGTGTGTGGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCTATCATGACAAAATAACGCATAATTATGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATTGAGGCGGAAGTAACGACCGCCATGATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAACCAGCTTATCGCGTTTTTCGTCCGTCAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGCGACCCCACGTATTTTCTCGCACTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCGCCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTCCTCCAAATAATCCACATATTACCACACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGCAATACAAGGGTGATTGTGCGTTATCAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAAACGGTTATACATTTTATACCAGCAGTTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGCCATACAGTCAGGAAGTGATATTGACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTCACCGGCCATTTCTTATAATTCAGCTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGGGTCGCAAGGCTTGACTCCATGCGGGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATCGTTTTTGTCGGTTCGTGGTAATACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTTAGAAATAAATGAAACTCTTTTATCACC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGTCGATGAAATATCAGCGGCTATCAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTGACTTGTTGGTCACTTTTTTTATTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAATACAGTTAAGGGGTATATCAACAACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGGGACTTTCTCAGCGGACTCTGCAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACCTTAGAAAATTCATGGGGCTTCATCTTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTGCAGTAGACGTAACAACAATACTTAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGAGTTTCTAGAGTTAAAGGTTAATGAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATTTCTAACCTATCACTGCTTGGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAATACTCCCAGACTGGGGCATGGGTTAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTTCATTTGAAACTGCTTATAATGTTGAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTGTTTGGGTGCGTGACTCTCCTGCTTTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTCATGCGCAGTTATTGGACAAGAACGTCGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTGAGACTAGCCGCCAGTTCACTATCAGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCACCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTTCTTCACGGTCTACCCCAGCCATATCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAACTGTGACTGAAGAGTTTCTAGAGTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTGGTTCGGCCATGACTGTTGACTTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009997|2|1|3981875-3984902|CRT
TCTCTGAGCTGCCTGTGCGGCGGTGAAC	GAAGCGTTCGATCCGTTTGAAGATTTTAACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAACTAGCATTCCTATAATTAACTTCTTGCGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATTAAAATCAAATTCAAGGAGGTGGACTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGCTTAAGGCTTCACCTGCAAAAATCTCTCAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCAGAGGCTGAGTTATGCGCCATTTGATAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAACACCATCAACACCATCCTGACCATCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTGGAATATCTTTCAATGCATGGCCATTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTCCCCCCGCGTCTAACACCCGCACCCCGTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGGCGTCACCCAAAACACTGCGGCTATTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTAGCGTCTATCTACCGTGGCATGACCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATCCAACGCCAAACCATTGGCCGCGCCAATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTAGGTGCGAGGCACTCGAAAGCGCCGCC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCGCCGAACTTCAAACTGTTTTTGCCAGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAGACTGGTTTATTGGCGACGGTTTTAAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTCTCGCCATTGTCGTTGTCCTGTTTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATACCCTATATCCTGCTCCACTATATACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGATTTGGGCGGTGCATTATGTGCCAAACGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCATGGTGCGTGGCCATGGTGTGTGGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCTATCATGACAAAATAACGCATAATTATGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATTGAGGCGGAAGTAACGACCGCCATGATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAACCAGCTTATCGCGTTTTTCGTCCGTCAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGCGACCCCACGTATTTTCTCGCACTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCGCCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTCCTCCAAATAATCCACATATTACCACACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGCAATACAAGGGTGATTGTGCGTTATCAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAAACGGTTATACATTTTATACCAGCAGTTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGCCATACAGTCAGGAAGTGATATTGACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTCACCGGCCATTTCTTATAATTCAGCTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGGGTCGCAAGGCTTGACTCCATGCGGGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATCGTTTTTGTCGGTTCGTGGTAATACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTTAGAAATAAATGAAACTCTTTTATCACC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGTCGATGAAATATCAGCGGCTATCAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTGACTTGTTGGTCACTTTTTTTATTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAATACAGTTAAGGGGTATATCAACAACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGGGACTTTCTCAGCGGACTCTGCAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACCTTAGAAAATTCATGGGGCTTCATCTTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTGCAGTAGACGTAACAACAATACTTAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGAGTTTCTAGAGTTAAAGGTTAATGAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATTTCTAACCTATCACTGCTTGGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAATACTCCCAGACTGGGGCATGGGTTAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTTCATTTGAAACTGCTTATAATGTTGAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTGTTTGGGTGCGTGACTCTCCTGCTTTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTCATGCGCAGTTATTGGACAAGAACGTCGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTGAGACTAGCCGCCAGTTCACTATCAGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCACCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTTCTTCACGGTCTACCCCAGCCATATCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAACTGTGACTGAAGAGTTTCTAGAGTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTGGTTCGGCCATGACTGTTGACTTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009997|2|1|3981935-3984902|PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAACTAGCATTCCTATAATTAACTTCTTGCGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATTAAAATCAAATTCAAGGAGGTGGACTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGCTTAAGGCTTCACCTGCAAAAATCTCTCAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCAGAGGCTGAGTTATGCGCCATTTGATAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAACACCATCAACACCATCCTGACCATCTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTGGAATATCTTTCAATGCATGGCCATTAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTCCCCCCGCGTCTAACACCCGCACCCCGTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGGCGTCACCCAAAACACTGCGGCTATTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTAGCGTCTATCTACCGTGGCATGACCTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATCCAACGCCAAACCATTGGCCGCGCCAATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTAGGTGCGAGGCACTCGAAAGCGCCGCC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGCGCCGAACTTCAAACTGTTTTTGCCAGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAAGACTGGTTTATTGGCGACGGTTTTAAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTTCTCGCCATTGTCGTTGTCCTGTTTTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATACCCTATATCCTGCTCCACTATATACAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGATTTGGGCGGTGCATTATGTGCCAAACGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGCCATGGTGCGTGGCCATGGTGTGTGGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCTATCATGACAAAATAACGCATAATTATGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCATTGAGGCGGAAGTAACGACCGCCATGATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAACCAGCTTATCGCGTTTTTCGTCCGTCAGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGCGACCCCACGTATTTTCTCGCACTAAAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCGCCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTCCTCCAAATAATCCACATATTACCACACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCGCAATACAAGGGTGATTGTGCGTTATCAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAAACGGTTATACATTTTATACCAGCAGTTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAGCCATACAGTCAGGAAGTGATATTGACGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATTCACCGGCCATTTCTTATAATTCAGCTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAGGGTCGCAAGGCTTGACTCCATGCGGGATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAATCGTTTTTGTCGGTTCGTGGTAATACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGGTTAGAAATAAATGAAACTCTTTTATCACC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAATGTCGATGAAATATCAGCGGCTATCAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTGACTTGTTGGTCACTTTTTTTATTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGAATACAGTTAAGGGGTATATCAACAACAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGTTGGGACTTTCTCAGCGGACTCTGCAAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CACCTTAGAAAATTCATGGGGCTTCATCTTGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGTGCAGTAGACGTAACAACAATACTTAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAGAGTTTCTAGAGTTAAAGGTTAATGAAAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATTTCTAACCTATCACTGCTTGGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAATACTCCCAGACTGGGGCATGGGTTAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATTTCATTTGAAACTGCTTATAATGTTGAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGTGTTTGGGTGCGTGACTCTCCTGCTTTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACAGACCAACGCCTGATACCTTGTCCGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTCATGCGCAGTTATTGGACAAGAACGTCGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTGAGACTAGCCGCCAGTTCACTATCAGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTCACCCTTATTTATCTGCTCTGTGACGTACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGTTCTTCACGGTCTACCCCAGCCATATCGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAACTGTGACTGAAGAGTTTCTAGAGTTAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AATATTGGTTCGGCCATGACTGTTGACTTGTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009997.1\|WP_006086930.1\|3973674_3975006_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NC_009997.1\|WP_012197495.1\|3988979_3992360_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NC_009997.1\|WP_012197490.1\|3980109_3981681_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_009997.1\|WP_012197489.1\|3976382_3977252_-\|outer-membrane-protein-OmpK	unknown	unknown	gnl\|CDD\|367531
NC_009997.1\|WP_012197493.1\|3986630_3987626_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
NC_009997.1\|WP_006086934.1\|3979040_3979805_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NC_009997.1\|WP_138974008.1\|3970435_3971461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226249
NC_009997.1\|WP_006086933.1\|3977604_3978864_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NC_009997.1\|WP_012589055.1\|3998397_3998568_+\|hypothetical-protein	unknown	unknown	unknown
NC_009997.1\|WP_012197498.1\|3997448_3998423_+\|hypothetical-protein	unknown	unknown	unknown
NC_009997.1\|WP_012197497.1\|3995449_3996952_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NC_009997.1\|WP_012197492.1\|3985626_3986610_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_009997.1\|WP_006082702.1\|3972450_3973665_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_009997.1\|WP_012197491.1\|3985032_3985617_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NC_009997.1\|WP_012197499.1\|3999214_3999562_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NC_009997.1\|WP_006086931.1\|3975190_3975961_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NC_009997.1\|WP_012197496.1\|3992372_3993350_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_009997.1\|WP_012197494.1\|3987627_3988989_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_009997.1\|WP_006086935.1\|3979815_3980019_-\|hypothetical-protein	unknown	unknown	unknown
NC_009997.1\|WP_006086929.1\|3971648_3972359_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275

Protein	Function_ID	Function_description	E-value
NC_009997.1\|WP_006086930.1\|3973674_3975006_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NC_009997.1\|WP_012197495.1\|3988979_3992360_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_009997.1\|WP_012197490.1\|3980109_3981681_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_009997.1\|WP_012197489.1\|3976382_3977252_-\|outer-membrane-protein-OmpK	gnl\|CDD\|367531	pfam03502, Channel_Tsx, Nucleoside-specific channel-forming protein, Tsx.	4.16118e-90
NC_009997.1\|WP_012197493.1\|3986630_3987626_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	4.76127e-126
NC_009997.1\|WP_006086934.1\|3979040_3979805_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	4.90522e-96
NC_009997.1\|WP_138974008.1\|3970435_3971461_+\|hypothetical-protein	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	9.04964e-12
NC_009997.1\|WP_006086933.1\|3977604_3978864_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NC_009997.1\|WP_012197499.1\|3999214_3999562_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	6.65372e-07
NC_009997.1\|WP_012197492.1\|3985626_3986610_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_009997.1\|WP_006082702.1\|3972450_3973665_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_009997.1\|WP_012197491.1\|3985032_3985617_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	2.67898e-71
NC_009997.1\|WP_006086931.1\|3975190_3975961_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	5.07211e-176
NC_009997.1\|WP_012197496.1\|3992372_3993350_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.78124e-173
NC_009997.1\|WP_012197494.1\|3987627_3988989_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.72171e-173
NC_009997.1\|WP_012197497.1\|3995449_3996952_+\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	0.00558799
NC_009997.1\|WP_006086929.1\|3971648_3972359_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.60714e-164

>NC_009997.1|WP_012197490.1|3980109_3981681_-|peptide-chain-release-factor-3
MSIEINKRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTVKGKKSGQHAKSDWMEMEKDRGISITTSVMQFPYGGALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDSAKGVEERTIKLMEVTRLRDTPIVTFMNKLDRDIRDPIDLMDEVESVLNIACAPITWPIGSGKEFKGIYHILRDEVVLYQGGMGHTIQERRVIKGINNPDLEKAIGSYAADLRDEMELVRGASHEFDHAAFLKGELTPVFFGTALGNFGVDHILDGIVEWAPKPLPRESDARVVMPEEEKFTGFVFKIQANMDPKHRDRVAFMRVCSGRYEQGMKMHHVRIGKDVNVSDALTFMAGDRERAEEAYPGDIIGLHNHGTIRIGDTFTQGEKFRFTGVPNFAPEMFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPIDTNDLIVGAVGVLQFEVVVGRLKSEYNVEAIYEGISVSTARWVYCKDERKLEEFRRKCSQNLALDGGDNLTYIAPTMVNLNLSMERYPDIEFAKTREH
>NC_009997.1|WP_006086935.1|3979815_3980019_-|hypothetical-protein
MMANWITKTWQVYIQWCDRMGLTPENRRCCMPRLEDPPLAVKCAKATTADETVLPPEAHSNGKSTVE
>NC_009997.1|WP_006086934.1|3979040_3979805_-|TatD-family-hydrolase
MIDTHAHLDFVEFDIDRDAVVQRMHSVGVNNLIIPGMSPKHWHKQLTVAEQYQTYFALGIHPWFCPEDVDAAILALTSKVAALLECPRFVAIGECGLDKLYSSTWPQQLAFFEEQLTLAKSVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVEIAQEYIKLGFKLGIGGLIMNPNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLISEHLMSNAVQLFDL
>NC_009997.1|WP_006086933.1|3977604_3978864_-|NupC/NupG-family-nucleoside-CNT-transporter
MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKGMSDAVSSVIGYAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRIIGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMSDLPEDPDKPANVLDAAAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYVFMPLAFLIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGMVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVIAGSLANLMSATLAGLFLAM
>NC_009997.1|WP_012197489.1|3976382_3977252_-|outer-membrane-protein-OmpK
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNYLEMEFGGRSGVFDLYGYVDVFNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNVFFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
>NC_009997.1|WP_006086931.1|3975190_3975961_-|deoxyribose-phosphate-aldolase
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLELADAPKPTQGY
>NC_009997.1|WP_006086930.1|3973674_3975006_-|thymidine-phosphorylase
MFLAQEIIRKKRNGLALSSEEIQFFVQGITTNSVSEGQIAALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGPMAAACGGYVPMISGRGLGHTGGTLDKFDAIQGYQTEPSSELFRKVVKEVGVAIIGQTGDLVPADKRFYSIRDNTATVESISLITASILSKKLACNLDALAMDVKVGSGAFMPTYEASEELARSIAAVANGAGTKTTALLTDMNQVLASCAGNAVEVKEAIDFLTGAYRNPRLYEVTMGLCAEMLLLGGLASNEADARAKLNRVLDNGRAAELFGKMVSGLGGPVDFVENYSKYLPQSQIIRPVFADMQGYAYSMDTRELGLAVVTLGGGRRKPGDTLDYSVGLTQVCALGDKVDSSTPIAVIHAQSEAAFAEAELAVKKAIHIGETAPEKTPEIYAYIRASDL
>NC_009997.1|WP_006082702.1|3972450_3973665_-|phosphopentomutase
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGMPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTVLDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYGESFL
>NC_009997.1|WP_006086929.1|3971648_3972359_-|purine-nucleoside-phosphorylase
MATPHINAVEGAFAETMLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGKRISVMGSGMGIPSCSIYATELIRDYGVKNLIRVGTCGAISTDVKVRDVIIGMGACTDSAVNRLRFKGQDFAAIANYELMNAVIESAKVRGTKVRVGNIFSADLFYTPDPQMFDVMEKMGVLGVEMEAAGLYGVAHEFGARALCVVTVSDHIRTGEKTSAEERQTTFNDMIIMTLEAAITL
>NC_009997.1|WP_138974008.1|3970435_3971461_+|hypothetical-protein
MLYLKGLKKSHKISRLIQIAAAFALIFGLVQLWQTSLLQGQLLLKSQTQKMARLLVQQTAYGAAPALQLQNDEQLQWLASALVEDPKVMSAAIFSDQGMRLSFAQSITKDVVDPDSEEMNLLLSKYPPYVEPVIQEGKNLGYVEVRLDTKLFFNEIKEAHNLNMEQQQIMLLVAGLIGMLLSRSLSFKRADFDRRRFRVKLRQSPKKSKKESSAEDPSESASDGSAQVLTEDQPVSTTDNPQEKAAKSTKAPKAVTETSVDKLTQTSMQTKTEKTSEKSLELQDNTAVTNATNDAEQAAPVKVKPKVKSVRQVKHATKATAETSTPKTPSELSDLDTDSTG
>NC_009997.1|WP_012197491.1|3985032_3985617_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNHYLDITLLPNEEVGHYFLWEKLYHQVHLALVEHKNRVGQFEIAAAFPQFNEMDNSLGSKLRLLATQPQHLEDLKVSNWLRHFTDYLHISSIRPVPEKIEVYVAYSRPAIRANKAREIARRMKRHNETLEQATAHFEGFKPKKTKAPFVYMQSYTKDSRFPLFIQQTHSAVVKEGSVSFDSYGLSSRGYLPKF
>NC_009997.1|WP_012197492.1|3985626_3986610_-|type-I-F-CRISPR-associated-protein-Csy3
MADIKLSTPSVLAFEAKLLPSDALMFAGNWDENVWQPIIVGEKAVRGTISNRLKAATANDPAKLDAEVSKANLQTVDIAALPHHTDTLKLVFTLRILSDLHIPSTCNDPAYQEALAAKVKQYQIETQFSELAKRYAQNIANGRFLWRNRVGAQAVKIVVTANKQHFTFDSYDFNLRDFADDQQINELAKIIQFGLMEKHALIKVEAYSQLGQGQAVFPSQELVMGGGKGDKSKFLYQLDGQAAMHSQKIGNALRTIDTWHPDFEEIGPIAVEPYGSVTNRGAAYRQPKEKNDFYNLLDAWMLKDKIPSIEQQHYVMAMLIRGGVFGE
>NC_009997.1|WP_012197493.1|3986630_3987626_-|type-I-F-CRISPR-associated-protein-Csy2
MSQYLLVKKLDVQNANAIAGLTYGFPAITNFLGFAHALSRKLSRELDVSLGGVCVVSHKNRVHARQPKGWGDYVFALTRNPLTQQGNTAPINEEGRMNLQVSLLIEIKGLIQGDNQTEQMLIDQINALLPAMRLAGGQITHYGQIEILSDHEQQQKALRRLMPGFILIDRSDYLASHVNGLQQEVVHGAKPSLFDAWCDFATLNYQATRLDTEPEISGPSDTIKADWHYVPKPQAGYLVPIATGYCAISPVYEAGQVANVRDKSVPVAFAETAYSVGEWLSIHRLIDISAGIWRYSYQHPWYLAKTEPFQVDIPSIADVDAALTSFNLDDY
>NC_009997.1|WP_012197494.1|3987627_3988989_-|type-I-F-CRISPR-associated-protein-Csy1
MELTLSDALADYIAQRKQTKLEPLQKARDKMLEKTQEPIEIATANREYAEAAAPIEADFNPVNWLTDAAKRAKQISLATHAAKFTHSDAKASSILVADTAPESQTYLNTASLANKAIDAVGNAAALDVAKLLKISVNGESLIKQLQAQHVDALTAFTQDTELLKEWQLGFARALADEKLTGHTLTKQLYFPVSTALNGDESQHYHLLCPLFSSSLAHELYHHVTSTRFGDEPKAIREARKKGHYHASLEKIFPATAVQNFGGSKPQNISQLNSERYGQSFLLNCAPPHYQAQSKPPLTSASIFSRQLRFKTAGFIREFKAFLAGVTAQENNFKARYQRDYGFVLPIIDVLLNEAAIIQNMTEFAGWATSAECQLKTAHGLWLDVANPEPRFQQERAKGDWQDIIANDFATWLLAQLQNKERYVLGDIEHQYVKKLCLVQLKTFERHTPKHGDA
>NC_009997.1|WP_012197495.1|3988979_3992360_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKNALKKTRRVLDAFANRIGDNTWQTLITEDGLLTVKKMLKQTASRSTAVSCHWIRSRSRTQLLWIVGNRLKFNEQGIVPVNRTQLNLEHKEWEQGWHLNEVIVLTSSIAGLFHDFGKANDLFQLKLKGLTESKGEPYRHEWVSLRLFEAFANGLADKDWLEKLANIDKNSTEIEQQVLSRLFKEDSGYQRPFDQLAPFAKLVAWLIVSHHRLPLAHVGSVHTKEIDSWLSHCFSCHWNSANAENMTAIDTDLIRQNWQFSQGTPLLSRPWQHKARNLAERALNCPLILTEQVWLEQRFVGHMARLSLMLADHYYSSLPAEKSKVQWRDKTYNAFANTDHKRLPQAGNALKQQLDEHNIGVAVNAQRFAQNLPALKYTLPAIAQHKLFSQNATNAKYRWQDKAFAQAKLIAKGSERQGFFGVNMASTGCGKTIANARIMYGLADEREGCRFSVALGLRTLTLQTGDAYRDLLKLGDDELAVLIGSQAVSTLHQLNNATPQHKQIGSESAEDLFEQLFISYQGQIYDGRLKHWLAASPKLEQLVSAPILVSTIDHLMPATESLRGGKQIAPMLRLLTSDLILDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPSLIKTLFDAYHAGRQHFNQAHFATTEQPPIWCAWFDEYKSETLEISTSRSYIEQHKIFVSKRVKKLACQQVVRRGELVKLELASPTTFDECVAATLHRCLHQLHDMHHVVHPSGRKVSLGVVRMANINPMIAVAKLLINMSPQADYSIHYCVYHSQFPLAHRSYKESRLDNALSRHDEANLWRQPEIQQALSMTNTSNNIFIVLGTSVVEVGRDHDYDWAIAEPSSLRALIQLAGRIQRHRQQVPKTANLLVLNKNIRALKNEHPAYCKPGFESAALPLLQHDLTQLLTTELDAISAIPRIMEPVPSANGSEFQYSDLHKKQHAQAVNSFWGQEHRALQLALGPVGKDKAGVIFYRSYKEANLWWKHDVAWSGEFIRQTAFRQSQPQEAFLLRLPEDEILTWCQLDTTHKPYQYPTLNHRFNSEIVPLAKGCFWWFKPSTEQIYQDLADLLDSSITKVSEQFGEINLRMANKDQPALVWAWHEQLGVYECKDNKDSPWN
>NC_009997.1|WP_012197496.1|3992372_3993350_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANVYYLEYCRVMQKDGRVLYLTEAKNENQYFNIPIANTTVLLLGNGTSITQAAMRMLAQAGVLVGFCGGGGTPLYMTCEVEWLTPQSEYRPTEYLHGWMQFWFDDEKRLLAAKTFQQARIQFIEQVWQRDRELKTEGFIFKDPAIQAALETFHARTEVATKQSDLLLTEAQLTKVLYKHAANNTQLKDFTRQHQSTDIANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQVLQAFTDHKALDFMFNTVKDVALQDYSAEQIAAQGL
>NC_009997.1|WP_012197497.1|3995449_3996952_+|hypothetical-protein
MNYSVHQYLLRNGPSLSSEITEYLIHSCGLSSQTARQRVSRATQDILRLELSFPRRAKFLFLKEQAGTGLYWGRLNEALLSCNSAYGYAISAIEERGGIIPKCYFEIICGAPIKQKKHLSASTVLNRLFSTNLLKEVTVDSIGSCVYLGLHSNHVQSLIPHMKARILAEDLFLRGITSWLKNLGFVSYNQVKTRSNESNPVVSTTAWDLAAPSYLSPLVSGESQGGTIKPGFVVCDILLNNEVSERGIQPFLQKLNSLRSLKNVGKQLCFFFASSYSESAFNKLKSVGVSPATISSVFDKEVNSGMKELIELLSQVSRVSVSSEKLDVIFKTLGKVEGAASRLRGALFEYVVAEAMRASGYNGVEINKFCRNASGVQKEADVVCFNNKDVCFIEGKGYNINKKVTRDDVDYWLIEQVPVFHEYCLSHPDWKNKKLIFEFWTSSTFSDEALARLEEAKKATKRYTINFKNNKDLFLFIADSNNQALLKTYKDHFINYPMTL
>NC_009997.1|WP_012197498.1|3997448_3998423_+|hypothetical-protein
MNEPIIKDHLGRKACKKIVSYCESWFIKHVVKPIFFLLPPSLLTMLAVRKGMQEDVIDYFGQTAGEFLNNSALLIIICTYIYVVLMRAIYAGIENHAKPAKELEVGDLLALLKAIDIVVGDKTKRVTSEVKGIINNANVINELKFLQSIRPEQQIPLLVVGLRSVFEYMDKQKTVYRVGLLRIENDKPVDWFSFDPASLPPRTEAQTLSAPTSTVSQCIKNKSLVIVEDIQKELNKRTKKERRYIKSNTQETDEGSQLCYPLIHPATNKVEYVFTIAGNRAGCLNENYSELYAWVIRHFSIRVSLEHSLLIVKEKANESTKEAA
>NC_009997.1|WP_012589055.1|3998397_3998568_+|hypothetical-protein
MSQPKKQLENNEVKVKYSVDVTSKEAAKKLESENFKNSIEKELDSIAKKSKNSNNI
>NC_009997.1|WP_012197499.1|3999214_3999562_+|helix-turn-helix-domain-containing-protein
MKHLSELAVELKHYREQLALSQKDMLLNIGMSQQQYQRIESGSDTRLSTLLRVLEGLNLEMMIVPKQHISAVKALINQATSEPGIDRHSPNNLTTETGTSWDKVLHSVEDKEDNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_009038	Shewanella baltica OS155 plasmid pSbal04, complete sequence	4936-4967	0	1.0
NC_009997_2	2.29\|3983523\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983523-3983554	32	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	8620-8651	0	1.0
NC_009997_2	2.4\|3982023\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982023-3982054	32	NC_009038	Shewanella baltica OS155 plasmid pSbal04, complete sequence	2629-2660	1	0.969
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT774397	CrAssphage cr56_1, complete genome	73276-73307	5	0.844
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_027354	Propionibacterium phage PHL301M00, complete genome	14871-14902	5	0.844
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KJ578787	Propionibacterium phage PHL171M01, complete genome	14903-14934	6	0.812
NC_009997_2	2.23\|3983163\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983163-3983194	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	373906-373937	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	47650-47681	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1028225-1028256	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	47650-47681	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	559965-559996	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	451762-451793	6	0.812
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	47676-47707	6	0.812
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	324663-324694	7	0.781
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	504049-504080	7	0.781
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH744418	Streptomyces phage JustBecause, complete genome	96959-96990	7	0.781
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT310898	Streptomyces phage Kela, complete genome	96833-96864	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	MH105773	Vibrio phage Rostov-6, complete genome	34261-34292	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	NC_005879	Vibrio phage VP2, complete genome	33962-33993	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	AY510084	Vibriophage VP5, complete genome	33911-33942	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	KM612259	Vibrio phage QH, complete genome	33827-33858	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	AY505112	Vibriophage VP2, complete genome	33962-33993	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	KM612263	Vibrio phage H3, complete genome	33954-33985	7	0.781
NC_009997_2	2.19\|3982923\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982923-3982954	32	NC_005891	Vibrio phage VP5, complete genome	33911-33942	7	0.781
NC_009997_2	2.23\|3983163\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983163-3983194	32	NZ_CP010955	Sphingobium sp. YBL2 plasmid 1pYBL2-1, complete sequence	15726-15757	7	0.781
NC_009997_2	2.23\|3983163\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983163-3983194	32	NZ_CP018224	Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence	10832-10863	7	0.781
NC_009997_2	2.23\|3983163\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983163-3983194	32	NZ_CP047221	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed2, complete sequence	31967-31998	7	0.781
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN657115	Psychrobacter sp. strain ANT_P53 plasmid pA53P1, complete sequence	1386-1417	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	336739-336770	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	320956-320987	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	320946-320977	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KJ578766	Propionibacterium phage PHL067M09, complete genome	15056-15087	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_027380	Propionibacterium phage PHL067M01, complete genome	15047-15078	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	JX570709	Propionibacterium phage PHL067M10, complete genome	15047-15078	8	0.75
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	186385-186416	8	0.75
NC_009997_2	2.9\|3982323\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982323-3982354	32	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	429271-429302	8	0.75
NC_009997_2	2.13\|3982563\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982563-3982594	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	83075-83106	8	0.75
NC_009997_2	2.14\|3982623\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982623-3982654	32	MK380016	Klebsiella phage Kund-ULIP54, complete genome	36974-37005	8	0.75
NC_009997_2	2.14\|3982623\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982623-3982654	32	MN434093	Klebsiella phage AmPh_EK52, complete genome	36723-36754	8	0.75
NC_009997_2	2.16\|3982743\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982743-3982774	32	KF806588	Erwinia phage Ea9-2, complete genome	27326-27357	8	0.75
NC_009997_2	2.26\|3983343\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983343-3983374	32	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	284131-284162	8	0.75
NC_009997_2	2.33\|3983763\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983763-3983794	32	AP014024	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C114-MedDCM-OCT-S41-C54, * SEQUENCING IN PROGRESS *	2630-2661	8	0.75
NC_009997_2	2.33\|3983763\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983763-3983794	32	MK408758	Campylobacter phage CP20, complete genome	123445-123476	8	0.75
NC_009997_2	2.33\|3983763\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983763-3983794	32	FN667789	Campylobacter phage CPt10, complete genome	123639-123670	8	0.75
NC_009997_2	2.35\|3983883\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983883-3983914	32	NZ_CP021661	Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2	909-940	8	0.75
NC_009997_2	2.35\|3983883\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983883-3983914	32	NZ_CP021661	Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2	8931-8962	8	0.75
NC_009997_2	2.50\|3984783\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984783-3984814	32	MG676225	Aeromonas phage AhSzw-1, complete genome	40220-40251	8	0.75
NC_009997_2	2.51\|3984843\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984843-3984874	32	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	165631-165662	8	0.75
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN693991	Marine virus AFVG_250M861, complete genome	33936-33967	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN692996	Marine virus AFVG_117M70, complete genome	33924-33955	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN694291	Marine virus AFVG_250M864, complete genome	4379-4410	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN694083	Marine virus AFVG_250M863, complete genome	4381-4412	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN693818	Marine virus AFVG_250M1205, complete genome	34575-34606	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN694793	Marine virus AFVG_250M862, complete genome	33936-33967	9	0.719
NC_009997_2	2.3\|3981963\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3981963-3981994	32	MN693817	Marine virus AFVG_250M336, complete genome	34561-34592	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF431726	Vibrio phage vB_ValP_IME271, complete genome	33396-33427	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KR560069	Stenotrophomonas phage IME-SM1, complete genome	51175-51206	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KT373978	Mycobacterium phage Ukulele, complete genome	14502-14533	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF919525	Mycobacterium phage Murica, complete genome	14722-14753	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF668277	Mycobacterium phage MadamMonkfish, complete genome	14165-14196	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK433262	Mycobacterium phage Nimrod, complete genome	14986-15017	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH651174	Mycobacterium phage Easy2Say, complete genome	15994-16025	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH000607	Mycobacterium phage RiverMonster, complete genome	14499-14530	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MG872831	Mycobacterium phage Asriel, complete genome	13612-13643	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK757445	Mycobacterium phage Lilizi, complete genome	14446-14477	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH576953	Mycobacterium phage Hopey, complete genome	15015-15046	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF919506	Mycobacterium phage FireRed, complete genome	14766-14797	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	AY129331	Mycobacterium virus Cjw1, complete genome	15504-15535	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH590587	Mycobacterium phage xkcd, complete genome	14916-14947	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH371112	Mycobacterium phage Adnama, complete genome	15251-15282	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_042027	Mycobacterium phage Pumpkin, complete genome	14818-14849	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KY549152	Mycobacterium phage Maxxinista, complete genome	14214-14245	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK359309	Mycobacterium phage Czyszczon1, complete genome	14489-14520	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586041	Mycobacterium phage Elite2014, complete genome	13954-13985	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF919524	Mycobacterium phage MISSy, complete genome	14250-14281	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	EU816588	Mycobacterium phage Porky, complete genome	14575-14606	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK016502	Mycobacterium phage Pat3, complete genome	13458-13489	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KC748969	Mycobacterium phage Phaux, complete genome	14764-14795	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH536827	Mycobacterium phage Simpliphy, complete genome	14489-14520	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH669002	Mycobacterium phage Emmina, complete genome	14575-14606	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586035	Mycobacterium phage ChosenOne, complete genome	13954-13985	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	DQ398041	Mycobacterium virus 244, complete genome	15018-15049	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MG872832	Mycobacterium phage Barbarian, complete genome	13612-13643	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KC661277	Mycobacterium phage Phrux, complete genome	14485-14516	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MG757160	Mycobacterium phage Kimchi, complete genome	14734-14765	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH020247	Mycobacterium phage MPhalcon, complete genome	14250-14281	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	JN391441	Mycobacterium phage Elph10, complete genome	14214-14245	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KF306380	Mycobacterium phage DrDrey, complete genome	15230-15261	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK620893	Mycobacterium phage HanKaySha, complete genome	14489-14520	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH779503	Mycobacterium phage Gemini, complete genome	15251-15282	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_022969	Mycobacterium phage PhatBacter, complete genome	14766-14797	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586019	Mycobacterium phage Stark, complete genome	14502-14533	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586050	Mycobacterium phage Lilpickle, complete genome	13954-13985	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK016491	Mycobacterium phage BaboJay, complete genome	14282-14313	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KF562100	Mycobacterium phage HufflyPuff, complete genome	14722-14753	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MG872837	Mycobacterium phage Gage, complete genome	14734-14765	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_008194	Mycobacterium phage 244, complete genome	15018-15049	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KF279417	Mycobacterium phage Quink, complete genome	14502-14533	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	JN382248	Mycobacterium phage Lilac, complete genome	14235-14266	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586017	Mycobacterium phage OrionPax, complete genome	14489-14520	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KT020852	Mycobacterium phage NoSleep, complete genome	14486-14517	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK559429	Mycobacterium phage Moldemort, complete genome	14489-14520	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MF919535	Mycobacterium phage Terminus, complete genome	14831-14862	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_022976	Mycobacterium phage Nala, complete genome	14764-14795	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_021305	Mycobacterium phage Murphy, complete genome	14723-14754	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT522005	Mycobacterium phage Misfit, complete genome	14831-14862	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586037	Mycobacterium phage GooberAzure, complete genome	14734-14765	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	KC691255	Mycobacterium phage Dumbo, complete genome	14211-14242	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN586034	Mycobacterium phage Hoonter, complete genome	14734-14765	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	NC_004681	Mycobacterium phage Cjw1, complete genome	15504-15535	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MH513983	Mycobacterium phage ShereKhan, complete genome	15727-15758	9	0.719
NC_009997_2	2.12\|3982503\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982503-3982534	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	446074-446105	9	0.719
NC_009997_2	2.13\|3982563\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982563-3982594	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	485284-485315	9	0.719
NC_009997_2	2.13\|3982563\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982563-3982594	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	382928-382959	9	0.719
NC_009997_2	2.16\|3982743\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982743-3982774	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	389652-389683	9	0.719
NC_009997_2	2.16\|3982743\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982743-3982774	32	NZ_CP041396	Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence	53988-54019	9	0.719
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	180945-180976	9	0.719
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	186601-186632	9	0.719
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	183165-183196	9	0.719
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	164539-164570	9	0.719
NC_009997_2	2.27\|3983403\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983403-3983434	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	185966-185997	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	NZ_KY513280	Enterococcus faecalis strain 6742 plasmid p6742_1, complete sequence	6227-6258	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	NZ_CP028725	Enterococcus faecalis strain CVM N60443F plasmid pN60443F-2, complete sequence	2644-2675	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	MN831410	Enterococcus faecalis strain M17/0149 plasmid pM17/0149, complete sequence	31461-31492	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	NZ_AP018547	Enterococcus faecalis strain KUB3007 plasmid pKUB3007-4, complete sequence	6227-6258	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	NZ_CP028723	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-3, complete sequence	12466-12497	9	0.719
NC_009997_2	2.34\|3983823\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983823-3983854	32	MT223178	Enterococcus faecalis strain EFs17-1 plasmid pEFs17-1, complete sequence	17842-17873	9	0.719
NC_009997_2	2.47\|3984603\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984603-3984634	32	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	187966-187997	9	0.719
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT889372	Microbacterium phage Avocadoman, complete genome	3413-3444	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT639649	Microbacterium phage Burritobowl, complete genome	3353-3384	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK814753	Microbacterium phage BubbaBear, complete genome	3343-3374	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MN329675	Microbacterium phage SansAfet, complete genome	3343-3374	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT818427	Microbacterium phage AnnaLie, complete genome	3701-3732	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT310896	Microbacterium phage Lynlen, complete genome	3343-3374	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MK937610	Microbacterium phage Arroyo, complete genome	3825-3856	10	0.688
NC_009997_2	2.7\|3982203\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982203-3982234	32	MT889389	Microbacterium phage DickRichards, complete genome	3820-3851	10	0.688
NC_009997_2	2.12\|3982503\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982503-3982534	32	NZ_CP022659	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence	940-971	10	0.688
NC_009997_2	2.12\|3982503\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3982503-3982534	32	NZ_CP022659	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence	67386-67417	10	0.688
NC_009997_2	2.21\|3983043\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983043-3983074	32	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	3381-3412	10	0.688
NC_009997_2	2.33\|3983763\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983763-3983794	32	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	12231-12262	10	0.688
NC_009997_2	2.40\|3984183\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984183-3984214	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	383010-383041	10	0.688
NC_009997_2	2.49\|3984723\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984723-3984754	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	698421-698452	10	0.688
NC_009997_2	2.50\|3984783\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3984783-3984814	32	NC_047949	Aeromonas phage AhSzq-1, partial genome	42951-42982	10	0.688
NC_009997_2	2.28\|3983463\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983463-3983494	32	NZ_CP029972	Lactobacillus kefiri strain DH5 plasmid pDH5, complete sequence	35122-35153	11	0.656
NC_009997_2	2.28\|3983463\|32\|NC_009997\|CRISPRCasFinder,CRT,PILER-CR	3983463-3983494	32	NZ_CP013155	Lactobacillus plantarum strain MF1298 plasmid pMF1298-5, complete sequence	29732-29763	11	0.656

1. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_009038 (Shewanella baltica OS155 plasmid pSbal04, complete sequence) position: , mismatch: 0, identity: 1.0

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gccaacaccatcaacaccatcctgaccatcta	Protospacer
********************************

2. spacer 2.29|3983523|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 0, identity: 1.0

caagccatacagtcaggaagtgatattgacga	CRISPR spacer
caagccatacagtcaggaagtgatattgacga	Protospacer
********************************

3. spacer 2.4|3982023|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_009038 (Shewanella baltica OS155 plasmid pSbal04, complete sequence) position: , mismatch: 1, identity: 0.969

cattaaaatcaaattcaaggaggtggactaaa	CRISPR spacer
cattaaaatcaaattcaaggaggtgaactaaa	Protospacer
*************************.******

4. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT774397 (CrAssphage cr56_1, complete genome) position: , mismatch: 5, identity: 0.844

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
tcctacaccatcaacaccatccttaccatcac	Protospacer
 ** ******************* ******

5. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_027354 (Propionibacterium phage PHL301M00, complete genome) position: , mismatch: 5, identity: 0.844

-gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
agccga-accattaacaccatcccgaccatcca	Protospacer
 ***.* *****.**********.*******.*

6. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KJ578787 (Propionibacterium phage PHL171M01, complete genome) position: , mismatch: 6, identity: 0.812

-gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
agccga-accattaacaccatcccgaccatcag	Protospacer
 ***.* *****.**********.******* .

7. spacer 2.23|3983163|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gaaccagcttatcgcgtttttcgtccgtcagc	CRISPR spacer
gcatcgccttatcgagttcttcgtccgtcagc	Protospacer
* *.*. ******* ***.*************

8. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

9. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

10. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

11. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

12. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

13. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 6, identity: 0.812

gcgcaatacaagggtgattgtgcg-ttatcaag	CRISPR spacer
acgccatacaagggggattgtgcgaccatcaa-	Protospacer
.*** ********* ********* ..*****

14. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 7, identity: 0.781

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gccttcaccatcaacaccatcctgttcctgga	Protospacer
***  ******************* .* *  *

15. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 7, identity: 0.781

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gccttcaccatcaacaccatcctgttcctgga	Protospacer
***  ******************* .* *  *

16. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 7, identity: 0.781

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gccccggccatcaactccatcctgaccacctc	Protospacer
***   .******** ************.**

17. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 7, identity: 0.781

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gccccggccatcaactccatcctgaccacctc	Protospacer
***   .******** ************.**

18. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH105773 (Vibrio phage Rostov-6, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgctgtgtggcgat	Protospacer
 ***...  ************ ******** **

19. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_005879 (Vibrio phage VP2, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgttgtgtggcgat	Protospacer
 ***...  ************ ******** **

20. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to AY510084 (Vibriophage VP5, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgttgtgtggcgat	Protospacer
 ***...  ************ ******** **

21. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KM612259 (Vibrio phage QH, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgctgtgtggcgat	Protospacer
 ***...  ************ ******** **

22. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to AY505112 (Vibriophage VP2, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgttgtgtggcgat	Protospacer
 ***...  ************ ******** **

23. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KM612263 (Vibrio phage H3, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgctgtgtggcgat	Protospacer
 ***...  ************ ******** **

24. spacer 2.19|3982923|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_005891 (Vibrio phage VP5, complete genome) position: , mismatch: 7, identity: 0.781

-ggccatggtgcgtggccatggtgtgtggccat	CRISPR spacer
tggctgc-ttgcgtggccatgttgtgtggcgat	Protospacer
 ***...  ************ ******** **

25. spacer 2.23|3983163|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010955 (Sphingobium sp. YBL2 plasmid 1pYBL2-1, complete sequence) position: , mismatch: 7, identity: 0.781

gaaccagcttatcgcgtttttcgtccgtcagc	CRISPR spacer
gttctaccttatcgcggctttcgtccgtcagg	Protospacer
*  *.* ********* .*************

26. spacer 2.23|3983163|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018224 (Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence) position: , mismatch: 7, identity: 0.781

gaaccagcttatcgcgtttttcgtccgtcagc	CRISPR spacer
gttctaccttatcgcggctttcgtccgtcagg	Protospacer
*  *.* ********* .*************

27. spacer 2.23|3983163|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047221 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gaaccagcttatcgcgtttttcgtccgtcagc	CRISPR spacer
gttctaccttatcgcggctttcgtccgtcagg	Protospacer
*  *.* ********* .*************

28. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN657115 (Psychrobacter sp. strain ANT_P53 plasmid pA53P1, complete sequence) position: , mismatch: 8, identity: 0.75

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
aacatagcaatcctataattaatttctgatac	Protospacer
**  ***** ************.**** ...*

29. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ctgaacaccctcaacaccatcctgacccgaca	Protospacer
 . ****** *****************   .*

30. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ctgaacaccctcaacaccatcctgacccgaca	Protospacer
 . ****** *****************   .*

31. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ctgaacaccctcaacaccatcctgacccgaca	Protospacer
 . ****** *****************   .*

32. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KJ578766 (Propionibacterium phage PHL067M09, complete genome) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ggccgaaccattaacaccatcccgaccatcag	Protospacer
* * . *****.**********.******* .

33. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_027380 (Propionibacterium phage PHL067M01, complete genome) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ggccgaaccattaacaccatcccgaccatcag	Protospacer
* * . *****.**********.******* .

34. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to JX570709 (Propionibacterium phage PHL067M10, complete genome) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ggccgaaccattaacaccatcccgaccatcag	Protospacer
* * . *****.**********.******* .

35. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacaccatcaactccatcatgaaagtcga	Protospacer
..************* ***** ***  .** *

36. spacer 2.9|3982323|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ctccccccgcgtctaacacccgcaccc-cgtct	CRISPR spacer
gcagccccgcgtccagcacccgcacccgcgac-	Protospacer
 .  *********.*.*********** ** *

37. spacer 2.13|3982563|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atggtaggtgcgaggcactcgaaagcgccgcc	CRISPR spacer
cagtcaggtgggaggcagtcgaaagcgccgtg	Protospacer
  * .***** ****** ************.

38. spacer 2.14|3982623|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK380016 (Klebsiella phage Kund-ULIP54, complete genome) position: , mismatch: 8, identity: 0.75

ttgcgccgaacttcaaactgtttttgccagct--	CRISPR spacer
ttgcgctgaacctcaaactg--tttgacaataat	Protospacer
******.****.********  **** **..

39. spacer 2.14|3982623|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN434093 (Klebsiella phage AmPh_EK52, complete genome) position: , mismatch: 8, identity: 0.75

ttgcgccgaacttcaaactgtttttgccagct--	CRISPR spacer
ttgcgctgaacctcaaactg--tttgacaataat	Protospacer
******.****.********  **** **..

40. spacer 2.16|3982743|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KF806588 (Erwinia phage Ea9-2, complete genome) position: , mismatch: 8, identity: 0.75

ttttctcgccattgtcgttgtcctgtttttta	CRISPR spacer
tgggttaggcattgtcgttatccggtttttta	Protospacer
*   .* * **********.*** ********

41. spacer 2.26|3983343|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 8, identity: 0.75

actcctccaaa------taatccacatattaccacact	CRISPR spacer
------ccaaaagaaactaatccacatattacctcaca	Protospacer
      *****      **************** ***

42. spacer 2.33|3983763|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to AP014024 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C114-MedDCM-OCT-S41-C54, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aggttagaaataaatgaaactcttttatcacc	CRISPR spacer
ttgttagaaataaatgaaaatcttttcggaga	Protospacer
  ***************** ******   *

43. spacer 2.33|3983763|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK408758 (Campylobacter phage CP20, complete genome) position: , mismatch: 8, identity: 0.75

aggttagaaataaatgaaactcttttatcacc	CRISPR spacer
atcattgaaataaatgaaactaatttatcatt	Protospacer
*   * ***************  *******..

44. spacer 2.33|3983763|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to FN667789 (Campylobacter phage CPt10, complete genome) position: , mismatch: 8, identity: 0.75

aggttagaaataaatgaaactcttttatcacc	CRISPR spacer
atcattgaaataaatgaaactaatttatcatt	Protospacer
*   * ***************  *******..

45. spacer 2.35|3983883|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021661 (Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2) position: , mismatch: 8, identity: 0.75

ctgttgacttgttggtcactttttttattact	CRISPR spacer
aggttgacctgttggtcactcttttgaacaca	Protospacer
  ******.***********.**** * .**

46. spacer 2.35|3983883|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021661 (Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2) position: , mismatch: 8, identity: 0.75

ctgttgacttgttggtcactttttttattact	CRISPR spacer
aggttgacctgttggtcactcttttgaacaca	Protospacer
  ******.***********.**** * .**

47. spacer 2.50|3984783|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.75

gaaactgtgactgaagagtttctagagttaaa	CRISPR spacer
taatgcaggacggaagagtttctggagttaaa	Protospacer
 **  .. *** ***********.********

48. spacer 2.51|3984843|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aatattggttcggccatgactgttgacttgtt	CRISPR spacer
caagtggcttcggccatgactgtcgaattgtc	Protospacer
 * .* * ***************.** ****.

49. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN693991 (Marine virus AFVG_250M861, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

50. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN692996 (Marine virus AFVG_117M70, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

51. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN694291 (Marine virus AFVG_250M864, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

52. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN694083 (Marine virus AFVG_250M863, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

53. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN693818 (Marine virus AFVG_250M1205, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacttcctgcgt	Protospacer
*  *..  *****.************.****.

54. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN694793 (Marine virus AFVG_250M862, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

55. spacer 2.3|3981963|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN693817 (Marine virus AFVG_250M336, complete genome) position: , mismatch: 9, identity: 0.719

aaactagcattcctataattaacttcttgcgc	CRISPR spacer
attccgtaattcccataattaacctcttgcgt	Protospacer
*  *..  *****.*********.*******.

56. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF431726 (Vibrio phage vB_ValP_IME271, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
aatcttaccatcaataccatcttgaccatctt	Protospacer
. .  .********.******.*********

57. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KR560069 (Stenotrophomonas phage IME-SM1, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
ctgaccaccatcaaccccaacctgaccatgac	Protospacer
 . * ********** *** *********

58. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KT373978 (Mycobacterium phage Ukulele, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

59. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF919525 (Mycobacterium phage Murica, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

60. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF668277 (Mycobacterium phage MadamMonkfish, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

61. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK433262 (Mycobacterium phage Nimrod, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

62. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH651174 (Mycobacterium phage Easy2Say, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

63. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH000607 (Mycobacterium phage RiverMonster, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

64. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MG872831 (Mycobacterium phage Asriel, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

65. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK757445 (Mycobacterium phage Lilizi, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

66. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH576953 (Mycobacterium phage Hopey, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

67. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF919506 (Mycobacterium phage FireRed, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

68. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to AY129331 (Mycobacterium virus Cjw1, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

69. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH590587 (Mycobacterium phage xkcd, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

70. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH371112 (Mycobacterium phage Adnama, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

71. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_042027 (Mycobacterium phage Pumpkin, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

72. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KY549152 (Mycobacterium phage Maxxinista, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

73. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK359309 (Mycobacterium phage Czyszczon1, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

74. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586041 (Mycobacterium phage Elite2014, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

75. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF919524 (Mycobacterium phage MISSy, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

76. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to EU816588 (Mycobacterium phage Porky, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

77. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK016502 (Mycobacterium phage Pat3, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

78. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KC748969 (Mycobacterium phage Phaux, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

79. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH536827 (Mycobacterium phage Simpliphy, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

80. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH669002 (Mycobacterium phage Emmina, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

81. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586035 (Mycobacterium phage ChosenOne, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

82. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to DQ398041 (Mycobacterium virus 244, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

83. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MG872832 (Mycobacterium phage Barbarian, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

84. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KC661277 (Mycobacterium phage Phrux, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

85. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MG757160 (Mycobacterium phage Kimchi, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

86. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH020247 (Mycobacterium phage MPhalcon, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

87. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to JN391441 (Mycobacterium phage Elph10, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

88. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KF306380 (Mycobacterium phage DrDrey, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

89. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK620893 (Mycobacterium phage HanKaySha, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

90. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH779503 (Mycobacterium phage Gemini, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

91. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_022969 (Mycobacterium phage PhatBacter, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

92. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586019 (Mycobacterium phage Stark, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

93. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586050 (Mycobacterium phage Lilpickle, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

94. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK016491 (Mycobacterium phage BaboJay, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

95. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KF562100 (Mycobacterium phage HufflyPuff, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

96. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MG872837 (Mycobacterium phage Gage, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

97. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_008194 (Mycobacterium phage 244, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

98. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KF279417 (Mycobacterium phage Quink, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

99. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to JN382248 (Mycobacterium phage Lilac, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

100. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586017 (Mycobacterium phage OrionPax, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

101. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KT020852 (Mycobacterium phage NoSleep, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

102. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK559429 (Mycobacterium phage Moldemort, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

103. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MF919535 (Mycobacterium phage Terminus, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

104. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_022976 (Mycobacterium phage Nala, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

105. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_021305 (Mycobacterium phage Murphy, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

106. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT522005 (Mycobacterium phage Misfit, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

107. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586037 (Mycobacterium phage GooberAzure, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

108. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to KC691255 (Mycobacterium phage Dumbo, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

109. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN586034 (Mycobacterium phage Hoonter, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

110. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_004681 (Mycobacterium phage Cjw1, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

111. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MH513983 (Mycobacterium phage ShereKhan, complete genome) position: , mismatch: 9, identity: 0.719

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
atcaacagcatcaaccccatcctgaagaagaa	Protospacer
..***** ******* *********  *   *

112. spacer 2.12|3982503|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gatccaacgccaaaccattggccgcgccaatg	CRISPR spacer
ctatcgcctccaaaccattggccacgccgatg	Protospacer
   .*. * **************.****.***

113. spacer 2.13|3982563|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

atggtaggtgcgaggcactcgaaagcgccgcc	CRISPR spacer
aagcactccgcgaggcactcgaaagcttcgcc	Protospacer
* *     .***************** .****

114. spacer 2.13|3982563|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 9, identity: 0.719

atggtaggtgcgaggcactcgaaagcgccgcc	CRISPR spacer
aagcactccgcgaggcactcgaaagcttcgcc	Protospacer
* *     .***************** .****

115. spacer 2.16|3982743|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

ttttctcgccattgtcgttgtcctgtttttta	CRISPR spacer
cggttttgccatttgcgttgtcctgtttttcc	Protospacer
.  *.*.******  ***************.

116. spacer 2.16|3982743|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041396 (Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttttctcgccattgtcgttgtcctgtttttta	CRISPR spacer
ctgtagatacattgtccttgtcctgttgttta	Protospacer
.* *     ******* ********** ****

117. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcaatacaagggtgattgtgcgttatcaag	CRISPR spacer
gcgcaatacaaggttgatggtgcaataaggca	Protospacer
************* **** ****. **  . .

118. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcaatacaagggtgattgtgcgttatcaag	CRISPR spacer
gcgcaatacaaggttgatggtgcaataaggca	Protospacer
************* **** ****. **  . .

119. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcaatacaagggtgattgtgcgttatcaag	CRISPR spacer
gcgcaatacaaggttgatggtgcaataaggca	Protospacer
************* **** ****. **  . .

120. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcaatacaagggtgattgtgcgttatcaag	CRISPR spacer
gcgcaatacaaggttgatggtgcaataaggca	Protospacer
************* **** ****. **  . .

121. spacer 2.27|3983403|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcaatacaagggtgattgtgcgttatcaag	CRISPR spacer
gcgcaatacaaggttgatggtgcaataaggca	Protospacer
************* **** ****. **  . .

122. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY513280 (Enterococcus faecalis strain 6742 plasmid p6742_1, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

123. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028725 (Enterococcus faecalis strain CVM N60443F plasmid pN60443F-2, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

124. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN831410 (Enterococcus faecalis strain M17/0149 plasmid pM17/0149, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

125. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018547 (Enterococcus faecalis strain KUB3007 plasmid pKUB3007-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

126. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028723 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-3, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

127. spacer 2.34|3983823|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT223178 (Enterococcus faecalis strain EFs17-1 plasmid pEFs17-1, complete sequence) position: , mismatch: 9, identity: 0.719

taatgtcgatgaaatatcagcggctatcaagt	CRISPR spacer
caaaaaaaattaaatatcagcgactatcaagc	Protospacer
.** .  .** ***********.********.

128. spacer 2.47|3984603|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 9, identity: 0.719

agtgagactagccgccagttcactatcagtaa	CRISPR spacer
ctggcaagcagccgccaggtcactatcaggaa	Protospacer
   * .* .********* ********** **

129. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT889372 (Microbacterium phage Avocadoman, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

130. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT639649 (Microbacterium phage Burritobowl, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

131. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK814753 (Microbacterium phage BubbaBear, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

132. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MN329675 (Microbacterium phage SansAfet, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

133. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT818427 (Microbacterium phage AnnaLie, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

134. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT310896 (Microbacterium phage Lynlen, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

135. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MK937610 (Microbacterium phage Arroyo, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

136. spacer 2.7|3982203|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to MT889389 (Microbacterium phage DickRichards, complete genome) position: , mismatch: 10, identity: 0.688

gccaacaccatcaacaccatcctgaccatcta	CRISPR spacer
gaagacaccatcaacaccttcctggccccgct	Protospacer
*  .************** *****.** . .

137. spacer 2.12|3982503|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 10, identity: 0.688

gatccaacgccaaaccattggccgcgccaatg	CRISPR spacer
acgccagcgccaacccattggccgcgcgtcac	Protospacer
.  ***.****** *************

138. spacer 2.12|3982503|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 10, identity: 0.688

gatccaacgccaaaccattggccgcgccaatg	CRISPR spacer
acgccagcgccaacccattggccgcgcgtcac	Protospacer
.  ***.****** *************

139. spacer 2.21|3983043|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 10, identity: 0.688

gctatcatgacaaaataacgcataattatgcg	CRISPR spacer
aaagttatgacaaaataacgcttaactatctc	Protospacer
.  .*.*************** ***.*** .

140. spacer 2.33|3983763|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aggttagaaataaatgaaactcttttatcacc	CRISPR spacer
gaattagaaaaaaatgtaactctttttaattc	Protospacer
...******* ***** *********    .*

141. spacer 2.40|3984183|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aagagtttctagagttaaaggttaatgaaaaa	CRISPR spacer
tgatagatttagaattaaaagttaatgaaaaa	Protospacer
 .. .  *.****.*****.************

142. spacer 2.49|3984723|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agttcttcacggtctaccccagccatatcgtt	CRISPR spacer
ttaccatcaaggtctagcccagccatatctag	Protospacer
   .* *** ****** ************

143. spacer 2.50|3984783|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NC_047949 (Aeromonas phage AhSzq-1, partial genome) position: , mismatch: 10, identity: 0.688

gaaactgtgactgaagagtttctagagttaaa	CRISPR spacer
tagtgcagtacagaagagtttctagagttgaa	Protospacer
 *.  ..  ** *****************.**

144. spacer 2.28|3983463|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029972 (Lactobacillus kefiri strain DH5 plasmid pDH5, complete sequence) position: , mismatch: 11, identity: 0.656

taaacggttatacattttataccagcagtttt	CRISPR spacer
gaaacggttataaatttaataccaaggaaaaa	Protospacer
 *********** **** ******. ..

145. spacer 2.28|3983463|32|NC_009997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013155 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-5, complete sequence) position: , mismatch: 11, identity: 0.656

taaacggttatacattttataccagcagtttt	CRISPR spacer
gaaacggttataaatttaataccaaggaaaaa	Protospacer
 *********** **** ******. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

676558 : 756403

Cedratvirus(25.0%)

integrase,transposase

attL 674978:674996|attR 685130:685148

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
674978:674996	attL	NA	NA	NA	NA
WP_006083191.1\|676558_677881_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_006083190.1\|677864_679418_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_006083189.1\|679410_681492_+	hypothetical protein	NA	NA	NA	NA
WP_006083188.1\|681491_682019_+	hypothetical protein	NA	NA	NA	NA
WP_006083187.1\|682098_682536_+	hypothetical protein	NA	NA	NA	NA
WP_006083186.1\|682532_684686_+	AAA family ATPase	A0A285PXL3	Cedratvirus	1.3e-26	27.7
WP_006083185.1\|685450_685729_+	hypothetical protein	NA	NA	NA	NA
685130:685148	attR	NA	NA	NA	NA
WP_006079577.1\|685725_686835_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_012196616.1\|688635_691668_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_006083183.1\|692870_694040_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	1.6e-79	41.6
WP_006083180.1\|696057_696735_+	hypothetical protein	NA	NA	NA	NA
WP_006083179.1\|696854_697712_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_006083178.1\|697819_698929_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083177.1\|699386_699641_-	hypothetical protein	NA	NA	NA	NA
WP_006083176.1\|699982_700384_+	DUF4354 family protein	NA	NA	NA	NA
WP_012196620.1\|700757_703046_+	hypothetical protein	NA	NA	NA	NA
WP_012196621.1\|704099_710693_+	hypothetical protein	NA	NA	NA	NA
WP_006083173.1\|710785_715408_+	hypothetical protein	NA	NA	NA	NA
WP_006083172.1\|715712_718589_+	RHS repeat protein	NA	NA	NA	NA
WP_006083171.1\|719406_722271_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_006083170.1\|722434_722995_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.8e-31	41.4
WP_006083169.1\|726406_726853_-	hypothetical protein	NA	NA	NA	NA
WP_006083168.1\|726839_727463_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012196624.1\|727797_730740_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_006083166.1\|731615_734522_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_006087485.1\|735868_736438_+	hypothetical protein	NA	NA	NA	NA
WP_006083164.1\|736501_736951_+	hypothetical protein	NA	NA	NA	NA
WP_006083163.1\|736953_739800_+	TcfC E-set like domain-containing protein	NA	NA	NA	NA
WP_006083162.1\|739792_740527_+	hypothetical protein	NA	NA	NA	NA
WP_006083161.1\|740528_741536_+	hypothetical protein	NA	NA	NA	NA
WP_006083160.1\|742385_742937_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_006083112.1\|743573_744674_-\|transposase	ISAs1-like element ISSba1 family transposase	NA	NA	NA	NA
WP_012088173.1\|745400_748325_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_006086140.1\|749018_749591_+	porin family protein	NA	NA	NA	NA
WP_006083156.1\|751114_751456_+	hypothetical protein	NA	NA	NA	NA
WP_190273458.1\|752213_752375_-	hypothetical protein	NA	NA	NA	NA
WP_006083154.1\|752669_753320_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_006083152.1\|754511_754796_+	AAA family ATPase	NA	NA	NA	NA
WP_012196627.1\|755479_756403_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	4.8e-148	81.4

DBSCAN-SWA_2

916214 : 944477

Vibrio_phage(35.29%)

tail,integrase,portal,protease,terminase

attL 913420:913434|attR 924726:924740

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
913420:913434	attL	NA	NA	NA	NA
WP_012196670.1\|916214_916964_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	1.6e-32	45.7
WP_012196671.1\|916960_917647_+	replication protein P	I6PBN0	Cronobacter_phage	2.6e-10	28.5
WP_012196672.1\|917636_918893_+\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	1.1e-46	33.7
WP_012196673.1\|918948_919167_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012196674.1\|919153_919507_+	hypothetical protein	NA	NA	NA	NA
WP_012196675.1\|919515_920130_+	oligoribonuclease	M4M9I5	Vibrio_phage	2.2e-64	63.6
WP_012196676.1\|920451_921129_+	hypothetical protein	NA	NA	NA	NA
WP_012196677.1\|921577_922111_+	lysozyme	A0A1S5R1I9	Pseudomonas_phage	1.6e-23	39.2
WP_012196678.1\|922091_922595_+	hypothetical protein	NA	NA	NA	NA
WP_012196679.1\|922705_923041_+	hypothetical protein	NA	NA	NA	NA
WP_012088279.1\|922994_923528_+\|terminase	terminase small subunit	O64316	Escherichia_phage	3.1e-35	49.1
WP_012196680.1\|923502_925500_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	2.6e-191	49.8
924726:924740	attR	NA	NA	NA	NA
WP_012196681.1\|925529_925736_+	hypothetical protein	NA	NA	NA	NA
WP_012196682.1\|925785_927360_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.7e-124	48.0
WP_012196683.1\|927331_929338_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	2.4e-221	62.7
WP_012196684.1\|929418_929742_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	5.2e-09	42.1
WP_012196685.1\|929734_930079_+	hypothetical protein	NA	NA	NA	NA
WP_012196686.1\|930082_930640_+	hypothetical protein	NA	NA	NA	NA
WP_012088287.1\|930673_931099_+	hypothetical protein	NA	NA	NA	NA
WP_012196687.1\|931095_931815_+	hypothetical protein	NA	NA	NA	NA
WP_012196688.1\|931938_932316_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012196689.1\|932327_932633_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012196690.1\|932709_933294_-	Rha family transcriptional regulator	A0A1C9IHV9	Salmonella_phage	5.5e-17	46.4
WP_080514246.1\|933378_933567_-	ash family protein	NA	NA	NA	NA
WP_012196691.1\|933609_933978_-	hypothetical protein	NA	NA	NA	NA
WP_012196692.1\|934127_938408_+\|tail	phage tail tape measure protein	A0A2I7QRW8	Vibrio_phage	7.2e-223	45.6
WP_012196693.1\|938445_938817_+	hypothetical protein	A0A2I7QS24	Vibrio_phage	6.6e-24	50.5
WP_012196694.1\|938824_941263_+	hypothetical protein	A0A2I7QXQ4	Vibrio_phage	1.6e-299	64.2
WP_012196695.1\|941275_942202_+	hypothetical protein	A0A2I7QSN6	Vibrio_phage	1.9e-32	34.3
WP_012196696.1\|942194_942482_+	hypothetical protein	NA	NA	NA	NA
WP_012196697.1\|942478_944239_+	hypothetical protein	A0A088C4B7	Shewanella_sp._phage	2.3e-143	59.7
WP_011847761.1\|944264_944477_+	hypothetical protein	A0A088C533	Shewanella_sp._phage	3.2e-15	64.3

DBSCAN-SWA_3

2340852 : 2355340

uncultured_Caudovirales_phage(18.18%)

integrase

attL 2339816:2339831|attR 2357909:2357924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2339816:2339831	attL	NA	NA	NA	NA
WP_006086442.1\|2340852_2342847_+	nitrate- and nitrite sensing domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	7.2e-32	39.1
WP_012196961.1\|2343173_2344469_-\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	1.3e-50	33.4
WP_012196962.1\|2344468_2344681_-	excisionase family protein	NA	NA	NA	NA
WP_012196963.1\|2344787_2345135_-	hypothetical protein	K7PKY8	Enterobacterial_phage	2.4e-12	39.0
WP_012196964.1\|2345143_2346694_-	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	4.5e-167	54.6
WP_012196965.1\|2346681_2346921_-	hypothetical protein	NA	NA	NA	NA
WP_012196966.1\|2346917_2347196_-	hypothetical protein	NA	NA	NA	NA
WP_012089044.1\|2347196_2347490_-	hypothetical protein	NA	NA	NA	NA
WP_012196967.1\|2347486_2348137_-	hypothetical protein	H2BDG4	Pseudomonas_virus	4.7e-33	39.7
WP_012196968.1\|2348133_2348523_-	hypothetical protein	A0A1I9SEY3	Klebsiella_phage	3.7e-25	52.5
WP_012196969.1\|2348519_2349149_-	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	3.6e-30	37.2
WP_012088961.1\|2349179_2349527_-	hypothetical protein	NA	NA	NA	NA
WP_012196970.1\|2349609_2349972_-	hypothetical protein	NA	NA	NA	NA
WP_048908693.1\|2350739_2351405_-	helix-turn-helix domain-containing protein	A0A1V0E8B5	Vibrio_phage	5.6e-58	54.7
WP_048908675.1\|2351507_2351798_+	helix-turn-helix transcriptional regulator	A0A1V0E8C7	Vibrio_phage	8.0e-09	41.8
WP_012196973.1\|2351829_2352453_+	hypothetical protein	NA	NA	NA	NA
WP_012196974.1\|2352458_2352785_+	hypothetical protein	NA	NA	NA	NA
WP_012196975.1\|2352947_2353670_+	hypothetical protein	NA	NA	NA	NA
WP_012196976.1\|2353820_2354657_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.0e-32	48.6
WP_012196977.1\|2354653_2355340_+	replication protein P	I6PBN0	Cronobacter_phage	2.0e-10	28.5
2357909:2357924	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2533316 : 2544433

Shigella_phage(44.44%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012197064.1\|2533316_2533952_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	1.9e-15	36.6
WP_012197065.1\|2533944_2534400_+	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	4.0e-15	40.0
WP_086012281.1\|2534481_2535264_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_012197067.1\|2535299_2535857_+	hypothetical protein	NA	NA	NA	NA
WP_012197068.1\|2535898_2536354_+	hypothetical protein	NA	NA	NA	NA
WP_012197069.1\|2536445_2536757_+	hypothetical protein	NA	NA	NA	NA
WP_012197070.1\|2536746_2537313_+	lysozyme	A0A0A1I5L5	Burkholderia_phage	1.2e-21	41.6
WP_012197071.1\|2537309_2537879_+	hypothetical protein	NA	NA	NA	NA
WP_012197072.1\|2537975_2538200_+	hypothetical protein	NA	NA	NA	NA
WP_012197073.1\|2538196_2538535_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_012197074.1\|2538534_2538831_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	1.8e-19	55.2
WP_006087223.1\|2538833_2539403_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	3.5e-48	58.1
WP_012197075.1\|2539402_2541043_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.3e-164	63.3
WP_012197076.1\|2541042_2542659_+	DUF935 domain-containing protein	A0A076FX05	Pseudomonas_phage	3.1e-118	45.6
WP_012197077.1\|2542651_2543971_+\|capsid	minor capsid protein	A0A0C4UQY9	Shigella_phage	6.7e-95	46.1
WP_012197078.1\|2543980_2544433_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	1.3e-18	47.6

DBSCAN-SWA_5

2731352 : 2742903

uncultured_Caudovirales_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012197176.1\|2731352_2732624_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.3e-15	24.8
WP_012197177.1\|2732739_2733642_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006081638.1\|2734064_2734724_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	5.6e-34	43.9
WP_006087499.1\|2734793_2735183_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.1e-20	40.9
WP_006087498.1\|2735197_2735554_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_006081641.1\|2735553_2735835_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_006081642.1\|2735828_2736167_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_006087497.1\|2736454_2737741_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.8e-100	46.0
WP_006081645.1\|2737759_2738134_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	7.9e-09	37.4
WP_006087496.1\|2738126_2739458_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.5e-78	38.8
WP_006087495.1\|2739466_2740093_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012197178.1\|2740149_2742903_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-83	48.5

DBSCAN-SWA_6

2943732 : 2954032

Yellowstone_lake_phycodnavirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006086837.1\|2943732_2945451_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.2e-56	29.0
WP_006081846.1\|2945450_2945945_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_006081847.1\|2946046_2946490_-	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	3.7e-21	51.5
WP_006081848.1\|2946852_2947284_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_006081849.1\|2947481_2947649_-	hypothetical protein	NA	NA	NA	NA
WP_006081850.1\|2947866_2948064_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006081851.1\|2948177_2949083_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_006081852.1\|2949241_2949580_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_006086838.1\|2949588_2951451_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.1e-102	38.2
WP_012197239.1\|2951517_2952042_-	co-chaperone HscB	NA	NA	NA	NA
WP_006081855.1\|2952058_2952382_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	46.3
WP_006081856.1\|2952396_2952780_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.2e-51	76.6
WP_006081857.1\|2952817_2954032_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.7e-32	31.8

DBSCAN-SWA_7

3375477 : 3498424

115

Burkholderia_phage(15.56%)

tRNA,tail,integrase,head,portal,capsid,plate,holin,terminase

attL 3464712:3464727|attR 3494911:3494926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006085461.1\|3375477_3376263_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_006085462.1\|3376365_3379815_-	pilus assembly protein FimV	NA	NA	NA	NA
WP_006085463.1\|3379993_3381010_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_006085464.1\|3381012_3382143_-	4-phosphoerythronate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	5.0e-14	23.5
WP_037391053.1\|3382303_3383515_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_006085466.1\|3383653_3385780_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_006085467.1\|3385875_3386640_-	RNA methyltransferase	NA	NA	NA	NA
WP_006085468.1\|3386629_3386914_-	YfcL family protein	NA	NA	NA	NA
WP_006085469.1\|3386919_3388098_-	ATP-NAD kinase family protein	NA	NA	NA	NA
WP_006085470.1\|3388198_3389374_-	MFS transporter	NA	NA	NA	NA
WP_006082233.1\|3389452_3390547_-	chorismate synthase	A0A291AU41	Pandoravirus	3.2e-82	44.9
WP_006082234.1\|3390671_3391616_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_006085471.1\|3391696_3392227_+	endonuclease SmrB	NA	NA	NA	NA
WP_006082236.1\|3392341_3392812_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_006085472.1\|3392981_3395771_+	insulinase family protein	A0A1V0SJA4	Klosneuvirus	8.6e-92	27.7
WP_012197301.1\|3396054_3400314_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012197302.1\|3400423_3400855_+	hypothetical protein	NA	NA	NA	NA
WP_012197304.1\|3401757_3403878_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_006082247.1\|3403883_3405194_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_006082248.1\|3405456_3406413_+	MoxR family ATPase	NA	NA	NA	NA
WP_012197305.1\|3406437_3407391_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_012197306.1\|3407393_3408014_+	DUF4381 domain-containing protein	NA	NA	NA	NA
WP_012197307.1\|3408007_3409027_+	VWA domain-containing protein	NA	NA	NA	NA
WP_012197308.1\|3409026_3411105_+	VWA domain-containing protein	NA	NA	NA	NA
WP_012197309.1\|3411098_3412793_+	protein BatD	NA	NA	NA	NA
WP_006085483.1\|3412865_3413429_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_006085484.1\|3413421_3414126_+	DUF3379 domain-containing protein	NA	NA	NA	NA
WP_006085485.1\|3414283_3415735_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_006085486.1\|3416088_3417390_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_006085487.1\|3417493_3417880_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_006085488.1\|3418026_3418743_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_006085489.1\|3418914_3419928_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_006085490.1\|3419964_3423207_+	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	2.1e-09	26.8
WP_006082265.1\|3423249_3423462_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_006085491.1\|3423566_3423998_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_006085492.1\|3424337_3424829_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006085494.1\|3425841_3428301_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.3e-22	32.9
WP_006085495.1\|3428383_3428929_-	YaeQ family protein	NA	NA	NA	NA
WP_006085496.1\|3429132_3430044_-	bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase	NA	NA	NA	NA
WP_006082272.1\|3430063_3430423_-	sulfurtransferase	NA	NA	NA	NA
WP_006082273.1\|3430551_3430869_-	DUF2007 domain-containing protein	NA	NA	NA	NA
WP_006082274.1\|3431103_3432051_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.0e-45	38.9
WP_011847205.1\|3432063_3433914_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_006082276.1\|3433931_3434264_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.4e-11	48.1
WP_006082277.1\|3434290_3435415_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.8e-93	47.8
WP_006082278.1\|3435577_3436615_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_006085498.1\|3436678_3436903_-	hypothetical protein	NA	NA	NA	NA
WP_006085499.1\|3437113_3437743_+	DUF479 domain-containing protein	NA	NA	NA	NA
WP_006085500.1\|3437812_3438484_+	RNA pseudouridine synthase	NA	NA	NA	NA
WP_006085501.1\|3438582_3439023_-	hypothetical protein	NA	NA	NA	NA
WP_012197311.1\|3439391_3439658_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_012197312.1\|3439855_3440983_-	phage late control D family protein	A0A1S5NV58	Burkholderia_phage	3.7e-94	51.0
WP_012197314.1\|3440979_3441429_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.2e-37	57.9
WP_012197315.1\|3441431_3445082_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	9.4e-139	39.7
WP_012197316.1\|3445090_3445219_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.6e-06	60.6
WP_012197317.1\|3445245_3445527_-\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	2.0e-17	54.8
WP_012197318.1\|3445663_3446179_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-59	64.3
WP_012197319.1\|3446188_3447358_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	5.5e-157	70.7
WP_012197320.1\|3447476_3447761_-	hypothetical protein	D4HTW0	Vibrio_phage	6.4e-27	63.7
WP_012197321.1\|3447888_3449121_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	Q8H9N0	Vibrio_phage	8.8e-198	80.2
WP_012197322.1\|3449123_3449654_-	hypothetical protein	D4HTV6	Vibrio_phage	3.8e-57	64.9
WP_012197323.1\|3449653_3450430_-\|tail	phage tail protein I	K7R2P6	Vibrio_phage	2.8e-77	57.3
WP_012197324.1\|3450422_3451352_-\|plate	baseplate J/gp47 family protein	D4HTV3	Vibrio_phage	2.4e-86	52.8
WP_012197325.1\|3451344_3451701_-	GPW/gp25 family protein	A0A218M4K8	Erwinia_phage	2.0e-22	52.9
WP_012197326.1\|3451697_3452306_-\|plate	phage baseplate assembly protein V	S4TUB5	Salmonella_phage	7.2e-36	42.4
WP_012197327.1\|3452645_3454007_+	AAA family ATPase	C7BGE8	Burkholderia_phage	1.1e-07	29.5
WP_012197328.1\|3453990_3454821_+	hypothetical protein	NA	NA	NA	NA
WP_012197329.1\|3455034_3455499_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	1.8e-26	48.3
WP_012197330.1\|3455480_3455954_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	9.0e-34	52.1
WP_012197331.1\|3456079_3456550_-	peptidase	Q7Y4E2	Escherichia_virus	1.2e-06	31.7
WP_012197332.1\|3456533_3457355_-	N-acetylmuramidase family protein	Q9ZXL6	Pseudomonas_virus	5.9e-65	51.4
WP_012197333.1\|3457360_3457684_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012197334.1\|3457680_3458058_-	alkaline phosphatase	A0A1S5NRL1	Burkholderia_phage	9.7e-15	39.7
WP_048908679.1\|3458060_3458279_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	1.1e-13	50.7
WP_012197336.1\|3458278_3458740_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.9e-33	49.4
WP_012197337.1\|3458841_3459546_-\|terminase	terminase	A4PE31	Ralstonia_virus	4.2e-43	47.4
WP_012197338.1\|3459548_3460553_-\|capsid	phage major capsid protein, P2 family	E5FFI6	Burkholderia_phage	9.9e-123	66.8
WP_012197339.1\|3460562_3461372_-\|capsid	GPO family capsid scaffolding protein	E5E3S5	Burkholderia_phage	1.3e-53	57.8
WP_012197340.1\|3461524_3463294_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	1.6e-229	66.2
WP_012197341.1\|3463293_3464340_+\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	1.1e-111	54.7
3464712:3464727	attL	NA	NA	NA	NA
WP_048908682.1\|3464823_3465261_-	hypothetical protein	NA	NA	NA	NA
WP_048908683.1\|3465380_3465677_-	hypothetical protein	NA	NA	NA	NA
WP_012197342.1\|3466066_3466294_-	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	1.6e-17	58.3
WP_080514254.1\|3466305_3466440_-	rubredoxin-like protein	NA	NA	NA	NA
WP_012197343.1\|3467077_3467338_-	hypothetical protein	NA	NA	NA	NA
WP_012197344.1\|3467334_3469614_-	replication endonuclease	A0A2P1CKY6	Pseudoalteromonas_phage	1.4e-76	34.7
WP_012197346.1\|3469987_3470227_-	hypothetical protein	NA	NA	NA	NA
WP_012197347.1\|3470223_3470493_-	hypothetical protein	NA	NA	NA	NA
WP_012197348.1\|3470495_3470735_-	hypothetical protein	NA	NA	NA	NA
WP_012197349.1\|3470743_3471103_-	hypothetical protein	NA	NA	NA	NA
WP_048908684.1\|3471140_3471338_-	hypothetical protein	NA	NA	NA	NA
WP_012197351.1\|3471373_3471619_-	hypothetical protein	NA	NA	NA	NA
WP_048908685.1\|3471615_3471840_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012197352.1\|3472017_3472632_+	helix-turn-helix domain-containing protein	U5P0T5	Shigella_phage	1.5e-33	48.8
WP_012197353.1\|3472682_3472892_+	hypothetical protein	NA	NA	NA	NA
WP_012197354.1\|3473163_3473427_-	hypothetical protein	NA	NA	NA	NA
WP_012197355.1\|3473548_3474940_-	NTPase KAP	R9TRQ8	Vibrio_phage	1.4e-34	30.9
WP_052292769.1\|3475080_3475638_-	hypothetical protein	NA	NA	NA	NA
WP_048908687.1\|3475737_3476244_-	hypothetical protein	NA	NA	NA	NA
WP_012197357.1\|3476760_3477717_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.3e-73	44.3
WP_006085502.1\|3478005_3479385_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_006085503.1\|3479577_3480102_-	CIA30 family protein	NA	NA	NA	NA
WP_006082286.1\|3480176_3481403_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_006085504.1\|3481577_3482474_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.1e-27	28.6
WP_006082288.1\|3482613_3483084_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_006085505.1\|3483156_3484440_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.9e-43	28.4
WP_006085506.1\|3484487_3485045_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.3e-20	51.9
WP_012197360.1\|3485149_3486847_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_006085508.1\|3487345_3489175_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.1e-30	28.9
WP_006087183.1\|3489963_3491490_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_006087184.1\|3491688_3492141_-	hypothetical protein	NA	NA	NA	NA
WP_006087185.1\|3492398_3493043_-	hypothetical protein	NA	NA	NA	NA
WP_006087186.1\|3493182_3493986_-	hypothetical protein	NA	NA	NA	NA
WP_006087187.1\|3494352_3494919_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.7e-26	42.9
WP_006082293.1\|3497014_3498424_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
3494911:3494926	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3845235 : 3856384

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012197439.1\|3845235_3847860_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.2e-65	36.4
WP_006082605.1\|3848230_3848644_-	regulatory protein RecX	NA	NA	NA	NA
WP_006082606.1\|3848718_3849786_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.2e-111	61.9
WP_012197440.1\|3850170_3852741_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	5.1e-30	23.1
WP_006086853.1\|3852944_3853925_-	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	8.4e-34	32.7
WP_012197441.1\|3854005_3854902_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_012197442.1\|3855002_3855638_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.4e-34	49.4
WP_012197443.1\|3855634_3856384_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.5e-72	53.1

DBSCAN-SWA_9

3890857 : 3898319

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006082639.1\|3890857_3891337_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	47.0
WP_012197459.1\|3891467_3892571_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.4e-68	39.7
WP_012197460.1\|3892637_3893294_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-26	34.0
WP_012197461.1\|3893305_3894460_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-51	35.5
WP_006082643.1\|3894485_3894935_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_006082644.1\|3895208_3896462_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.1e-102	54.3
WP_011847462.1\|3896651_3898319_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.9e-39	28.0

DBSCAN-SWA_10

4013603 : 4024730

Vibrio_phage(22.22%)

integrase

attL 4017455:4017469|attR 4024899:4024913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012197506.1\|4013603_4014287_-	replication protein P	I6PBN0	Cronobacter_phage	2.6e-10	28.5
WP_012197507.1\|4014283_4015141_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.7e-35	46.2
WP_012197508.1\|4015285_4016023_-	hypothetical protein	NA	NA	NA	NA
WP_012088966.1\|4016186_4016513_-	hypothetical protein	NA	NA	NA	NA
WP_012088965.1\|4016518_4017142_-	hypothetical protein	NA	NA	NA	NA
WP_012088964.1\|4017173_4017464_-	helix-turn-helix transcriptional regulator	A0A1V0E8C7	Vibrio_phage	8.5e-19	64.2
4017455:4017469	attL	NA	NA	NA	NA
WP_012088963.1\|4017576_4018242_+	LexA family transcriptional regulator	A0A1V0E8B5	Vibrio_phage	7.3e-66	55.6
WP_012197509.1\|4018897_4019260_+	hypothetical protein	NA	NA	NA	NA
WP_012088961.1\|4019386_4019734_+	hypothetical protein	NA	NA	NA	NA
WP_012088960.1\|4019764_4020394_+	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	1.4e-29	37.8
WP_012197510.1\|4020390_4021455_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.7e-29	38.2
WP_012197511.1\|4021451_4021745_+	hypothetical protein	NA	NA	NA	NA
WP_012197512.1\|4021745_4022024_+	hypothetical protein	NA	NA	NA	NA
WP_006083885.1\|4022020_4022251_+	hypothetical protein	NA	NA	NA	NA
WP_012197513.1\|4022247_4022856_+	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	8.3e-08	37.9
WP_012197514.1\|4022852_4023173_+	hypothetical protein	K7PKY8	Enterobacterial_phage	1.1e-11	38.3
WP_012197515.1\|4023524_4024730_-\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	3.9e-118	50.4
4024899:4024913	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4109131 : 4115189

Vibrio_phage(66.67%)

integrase

attL 4101898:4101910|attR 4111277:4111289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4101898:4101910	attL	NA	NA	NA	NA
WP_012197547.1\|4109131_4110400_-\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	5.2e-44	33.3
WP_012088970.1\|4110400_4110625_-	hypothetical protein	NA	NA	NA	NA
WP_012197548.1\|4110614_4111298_-	replication protein P	I6PBN0	Cronobacter_phage	2.0e-10	28.5
4111277:4111289	attR	NA	NA	NA	NA
WP_012197549.1\|4111294_4112131_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	4.6e-33	48.6
WP_012197550.1\|4112282_4113050_-	hypothetical protein	NA	NA	NA	NA
WP_014358090.1\|4113200_4113527_-	hypothetical protein	G8CTB7	Vibrio_phage	1.1e-06	38.4
WP_012197552.1\|4113532_4114156_-	hypothetical protein	NA	NA	NA	NA
WP_012197553.1\|4114199_4114394_-	Cro/Cl family transcriptional regulator	R9TPV3	Vibrio_phage	8.0e-05	48.9
WP_012197554.1\|4114499_4115189_+	helix-turn-helix transcriptional regulator	R9TNM0	Vibrio_phage	4.5e-58	48.5

DBSCAN-SWA_12

4120136 : 4125796

Sinorhizobium_phage(16.67%)

integrase

attL 4116792:4116803|attR 4125881:4125892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4116792:4116803	attL	NA	NA	NA	NA
WP_012197559.1\|4120136_4120766_+	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	6.1e-30	37.8
WP_012197560.1\|4120762_4121152_+	hypothetical protein	A0A1I9SEY3	Klebsiella_phage	3.7e-25	52.5
WP_012197561.1\|4121148_4121841_+	hypothetical protein	R9VWB9	Serratia_phage	4.2e-32	40.7
WP_012197562.1\|4121837_4122131_+	hypothetical protein	NA	NA	NA	NA
WP_012197563.1\|4122131_4122410_+	hypothetical protein	NA	NA	NA	NA
WP_012197564.1\|4122406_4122646_+	hypothetical protein	NA	NA	NA	NA
WP_012197565.1\|4122633_4124184_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	8.3e-169	55.1
WP_006082045.1\|4124192_4124513_+	hypothetical protein	K7PKY8	Enterobacterial_phage	1.7e-12	38.3
WP_006083887.1\|4124571_4124787_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_012197566.1\|4124779_4125796_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	9.5e-81	47.4
4125881:4125892	attR	NA	NA	NA	NA

DBSCAN-SWA_13

5122402 : 5136139

Bacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012197805.1\|5122402_5127292_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	8.1e-69	31.4
WP_006079507.1\|5127650_5128376_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.7e-31	34.7
WP_006084637.1\|5128418_5129735_+	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	6.6e-10	24.0
WP_006084638.1\|5129864_5131847_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.7e-14	35.8
WP_006079504.1\|5131924_5132398_-	peroxiredoxin	M1I839	Pelagibacter_phage	5.5e-23	47.4
WP_006084639.1\|5132478_5133435_-	choice-of-anchor H family protein	NA	NA	NA	NA
WP_006079501.1\|5133793_5134084_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_006079500.1\|5134086_5134782_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	25.7
WP_006084640.1\|5134774_5136139_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	6.4e-08	23.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009999

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009997

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection