CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010067	Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete genome	2 crisprs	cas3,DEDDh,DinG,RT,PD-DExK	6	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010067_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010067_1

908104-908684

Orphan

Consensus_repeat	Method
TAGTCCTGNCGGCAGCGCCGGCAGGCTGGNCAGNNGGTTAT	CRT

9 spacers

The CRISPR arrays of NC_010067_1

>merge|NC_010067|1|908104-908684|CRT
TAGTCCTGGCGGCAGCGCCGGCAGGCTGGGCAGCTGGTTATCAAACACCACCAGCTCCTCTAGTCCTGGCGGCAGCGCCGAGAGGCTGGTCAGTCGGTTATTAGTGGCCCATAGCGACTGTAGTCCTGGCGGCAGCGCTGACAGGTGGGTCAGTAGGTTATGAGATACCGACAGTTTCTGTAGTCTTAGCGGCAGCGCTGGCAGGCTGGCCAGCTGGTTATCATCTACCGACAGCTCCTCTAGTCCTGGCGGCAGCGTCGGCAGGCTGGCCATCTGGTTATGAGAGGCCGACAGCGACTGTAGTCCTGACGGCAGCGCCGGCAGGCTGGGCAGCAGGTTACCATCTACCGACAGCTCCCGTAGTCCTGGCGGCAGCGCCGGCAGGCTGGCCAGTTGGTTATTAAAGGCCCACAGCTTACATAGTCCTGACGGTAGCTCCGGCAGGCTGGTCAGCGGGCTCTCAACAACAATCAGCTCCCTTAGTCCTGACGGCAGCGCCGGCAGGCTGGGCAGCTGGTTACCAGCGAAAATCAGCTCCTGTAGTCCTGCCGGCAACGTCGACAGGTGGGTCAGATTATTAT

>NC_010067|1|1|908104-908684|CRT
TAGTCCTGGCGGCAGCGCCGGCAGGCTGGGCAGCTGGTTAT	CAAACACCACCAGCTCCTC
TAGTCCTGGCGGCAGCGCCGAGAGGCTGGTCAGTCGGTTAT	TAGTGGCCCATAGCGACTG
TAGTCCTGGCGGCAGCGCTGACAGGTGGGTCAGTAGGTTAT	GAGATACCGACAGTTTCTG
TAGTCTTAGCGGCAGCGCTGGCAGGCTGGCCAGCTGGTTAT	CATCTACCGACAGCTCCTC
TAGTCCTGGCGGCAGCGTCGGCAGGCTGGCCATCTGGTTAT	GAGAGGCCGACAGCGACTG
TAGTCCTGACGGCAGCGCCGGCAGGCTGGGCAGCAGGTTAC	CATCTACCGACAGCTCCCG
TAGTCCTGGCGGCAGCGCCGGCAGGCTGGCCAGTTGGTTAT	TAAAGGCCCACAGCTTACA
TAGTCCTGACGGTAGCTCCGGCAGGCTGGTCAGCGGGCTCT	CAACAACAATCAGCTCCCT
TAGTCCTGACGGCAGCGCCGGCAGGCTGGGCAGCTGGTTAC	CAGCGAAAATCAGCTCCTG
TAGTCCTGCCGGCAACGTCGACAGGTGGGTCAGATTATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010067.1\|WP_000488018.1\|903936_905643_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_010067.1\|WP_077905479.1\|892698_894159_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|182293
NC_010067.1\|WP_012210022.1\|917377_918949_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_010067.1\|WP_001022120.1\|902945_903923_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NC_010067.1\|WP_001007311.1\|919953_920442_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|213799
NC_010067.1\|WP_024131831.1\|898923_900420_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NC_010067.1\|WP_000280762.1\|912805_913576_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NC_010067.1\|WP_000040011.1\|884330_885074_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NC_010067.1\|WP_000107731.1\|887864_890792_+\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|225750
NC_010067.1\|WP_077905528.1\|916555_917023_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NC_010067.1\|WP_001255346.1\|886246_887176_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182294
NC_010067.1\|WP_000829183.1\|905630_906656_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_010067.1\|WP_000598912.1\|915403_916159_+\|DgsA-anti-repressor-MtfA	unknown	unknown	gnl\|CDD\|185308
NC_010067.1\|WP_000400306.1\|895033_896488_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_010067.1\|WP_012210021.1\|917067_917343_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271182
NC_010067.1\|WP_048908555.1\|910208_911675_+\|type-III-secretion-effector-GogB	unknown	unknown	gnl\|CDD\|237954
NC_010067.1\|WP_149022077.1\|919601_919805_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381304
NC_010067.1\|WP_001193987.1\|885099_886164_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234636
NC_010067.1\|WP_000917216.1\|918976_919312_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_010067.1\|WP_012210023.1\|919298_919613_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366690

Protein	Function_ID	Function_description	E-value
NC_010067.1\|WP_000488018.1\|903936_905643_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	7.42316e-91
NC_010067.1\|WP_077905479.1\|892698_894159_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	gnl\|CDD\|182293	PRK10189, PRK10189, EmmdR/YeeO family multidrug/toxin efflux MATE transporter.	0
NC_010067.1\|WP_012210022.1\|917377_918949_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	3.08888e-104
NC_010067.1\|WP_001022120.1\|902945_903923_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.70253e-108
NC_010067.1\|WP_001007311.1\|919953_920442_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.60931e-50
NC_010067.1\|WP_024131831.1\|898923_900420_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	9.07233e-137
NC_010067.1\|WP_000280762.1\|912805_913576_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	3.88173e-98
NC_010067.1\|WP_000040011.1\|884330_885074_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	9.63481e-78
NC_010067.1\|WP_000107731.1\|887864_890792_+\|RHS-repeat-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	4.15956e-58
NC_010067.1\|WP_077905528.1\|916555_917023_+\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	4.4722e-31
NC_010067.1\|WP_001255346.1\|886246_887176_+\|L,D-transpeptidase	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	0
NC_010067.1\|WP_000829183.1\|905630_906656_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	9.20205e-132
NC_010067.1\|WP_000598912.1\|915403_916159_+\|DgsA-anti-repressor-MtfA	gnl\|CDD\|185308	PRK15410, PRK15410, DgsA anti-repressor MtfA; Provisional.	0
NC_010067.1\|WP_000400306.1\|895033_896488_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_010067.1\|WP_012210021.1\|917067_917343_+\|hypothetical-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.41354e-08
NC_010067.1\|WP_048908555.1\|910208_911675_+\|type-III-secretion-effector-GogB	gnl\|CDD\|237954	PRK15386, PRK15386, type III secretion effector GogB.	0
NC_010067.1\|WP_149022077.1\|919601_919805_+\|hypothetical-protein	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0.00510856
NC_010067.1\|WP_001193987.1\|885099_886164_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	1.10387e-156
NC_010067.1\|WP_000917216.1\|918976_919312_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	6.23959e-45
NC_010067.1\|WP_012210023.1\|919298_919613_-\|hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000235128

>NC_010067.1|WP_000829183.1|905630_906656_+|ABC-transporter-ATP-binding-protein
MAELRLEQLSKIFGNQTVVQKLDLTIPQGSFTAILGPSGCGKTTTLRIIAGLEQPSTGCLFLGSRLLANKIISLPPEQRNMGMVFQSYALWPHMTVEENVGYPLRLRQISSNIYKKRVMEALEAVELLAYSGRSPHELSGGQRQRVALARCLISNPEVILLDEPLSNLDRYLRTTMEKIFRELHHRTGTTFVYVTHDQAEAMALASHIAVMYKGTLVQWGIPQQIYEHPNNVWIAKFIGKGCILSLSIPGSEQFLDCTMLHQGFTQDRRVTYHNVLIRPEHVHLKNKGLPAKVENCIYQGERYLLELRLVDGQLLTAFHHSSVQPQQLVCIQLMQGWRLPK
>NC_010067.1|WP_000488018.1|903936_905643_+|iron-ABC-transporter-permease
MFQYQSINHNRYKWWSWLLFCFITLLILLPILQLFIFAITDWQHGRNSNLWHVLSNPLTWTALYNSLYTSGLGTLFSLLLGNLFAFCLVLTNIRIKQITFFLVMLPMMIPPQITAMSWLQLFRQVGIFFNSIGLSQGFGWPNPLYSAEGIALLLGIQNTPLVFLLIQTQLKYLPQEYIEAARLSGASFWKTFHDISLPLCRSTIWAGAAIAFVSSLGNFGIPAMLGIPISLLVLPVYIYQILSSFGPAVLNEVAALSVLTGVLTIGIMILQKHMQRHYAFPLIGITDNTLIFLLSNKWRIVIEILLSILIFSIVIAPLLALITTSLVPTTGVILNSDTFTLSAWKIIFDTQSATWRAILNSLLLSVSASLILMLLSLPLAWLLVRHPTRSLLWLYNILDIPYALPGVVLAISFILLFAHPLPLLDISLNGTLTIIFFAYMARFFTVCIKPVYSCMLQLDAAMEEAASLAGANVFQQFSHIVVPLLGPTAFSGAFLVFLSTIHELTVSALLWGPGKETLGVVIFNLYESGDIVQASAISVVVVIIVVLAMLLLNICSKFLPKGVMPWQN
>NC_010067.1|WP_001022120.1|902945_903923_+|ABC-transporter-substrate-binding-protein
MNIKKIITTILLIFISIPIFAKSVLVLYTSQPIEDAQVTVNTFEKHHPDIEVKWIRDGTTKLMTRIQAELAAGGETPDVLLIADSLSMESLKHQGLLTAYKSPQAKHFQSWLYDKNGYYYGTKMITTGIAYHSNAPVKPTSWLDLIKPELKNMTTLPSPLYSGAAQIHQATLMNNSRLGWSYYEKLRKNGAMPQSGNGAVLSAIVSGDKAYGFLVDYMAIRAKAKGAPIEFVFPKEGVSIVTEPVAIMKASKNPQGAKKFIDFLLSKEGQNMVLQQGYIPADAALPVPEGFPPRNSIKLMPFNRAKALTNTEVNKKCFAELFGSH
>NC_010067.1|WP_024131831.1|898923_900420_-|C69-family-dipeptidase
MFSFKKCVLTLSISLAFISSGFSCTTLLVGNEASSDGSMIVARSADSDAMKAQHFVIHPAMHNQTGMYSTKAHNGANDFTWPLPKESLRYTTVPNWKTQLHGATGFNEAGVGVSGTESIFASPKALAFDPYVEDKGITEDDIPDILLSQTKTAREAIALLGHIIETVGAGEGFGVAVVDDNEIWYLETATGHQWMAQRLPADQYFATGNQGRLQNYDPNDANMMGSKSLVTFATEKGLYNPQKDGKFNFSKAYTRDDERDRTYNDPRVWTIQQKFNPSVKQDMTAGRLFPVFMMPEKKMTLDDVKAVLRSHYEGTKHDPYSNGLNGKEPWRPVSVFRTYEAHVMQVRPWLPKEIGEVSYIGLGMADLTAFVPYYSGLKAYPANYTMGTDKADSQSIYWKYRKLQTLTMTDYPKLAPIVKKAYAEWEAKIAKEQQEVEAEYLNMAKINKDAADKMLNDFNLRIMADAEKLTEALTNQLFTLRTQDIQSDIFFANAAKKD
>NC_010067.1|WP_000400306.1|895033_896488_-|AMP-nucleosidase
MEHKGTNLTPEQALDRLEELYEQSVNALREAIASYIDNGTLPDPHARLNGLFVYPSLSVSWDGATPNLPKTRAFGRFTHPGCYTTTVTRPALFRAYLLGQLNLVYQDYGAHIAVEASHHEIPYPYVIDGSALTLDRSMSADLTRHFPTTELAQIGDETADGLFHPGEFYPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPNSPYIALSCAGGIWITAETEAPEEAISDLAWKKHQMPAWHLVTADGQGITLVNIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKAVSRMPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESSTIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR
>NC_010067.1|WP_077905479.1|892698_894159_+|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter
MVLTSPLRSILNVSTTLRKVVVRTPWYAKRKSYKVLFWREITPLAIPIFLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAAVIHYFGKQIIDVVAGEATADVKDLALIYLELTVLSYPAAAIALIGSGALRGAGNTKIPLLINGSMNMLNIIISSILIYGFFSWQGLGFIGAGLGLTISRYIGAIAIIWVLMIGFNPALRIPLKSYFKPLNFAIIWEVMGIGVPASVESVLFNSGKLLTQIFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGRRLGNGQITQAEIQLRHVFWLSTIGLTAIAWISAPFAGIMASFYTHDPDVKDVVVILIWLNAAFMPIWAASWVLPAGFKGARDARFAMWVSMLGMWGCRVVAGYVLGIVLGWGVVGIWLGMFFDWAVRAALFYWRMVSGRWLWKYPRPERKTR
>NC_010067.1|WP_000107731.1|887864_890792_+|RHS-repeat-protein
MSTSDYSKTPTITTYDNRHLAVRTLEWCRHPDTPQTTEIRPTYCQYDARGFLSQSADPRLAAAGLNNFTCDYDLGGRVLRTCSADAGTSLALSDAAGRTVLGMSGLVVTASGSTDMSRAVTTRRQYEDRSLPGRLLSVVEQASGKTGRVTERLIWSESSAKASANNLVGTCIRHYDPSGCVEIGSIALSGLALSVTRWLMTDDEVQADWQGDDRRGWDAQLDDVPYATLSQGDAAGRVVGITDAVGNKQRMVLDIAGMSTGRRLTVNGEEKDIVRSTTRSAAGQVLQEEHGNGVVVNREYEPQTQWLKRIKTERPAGHPQGAGVLQDLRYEYDPVGNVKCVRNDAEETRFWRNQQVEPENRYGYDSLYQLVSASGREKVNIGQQNRSFFPADSISCTRYLRTYTYDSGNNLTRIRHSASGSGNCHTTYITVSDSSNRAVLRSLAATPAEVEMHFGPSGEQLQLQPGQALAWTVRRELLQVTPVEREGAQDDWEYYRYDARSQRVVKGSRRQTGSGTLTQRVVYLPGLELRTKSSGESLQTVVSDNVRLLHWESGKPEGLSNDGLRYSYENLTGSSGLEVDEDGCIISVEEYYPYGGTSVWSGSSETEADYKTVRYSGKEQDATGLYYYGYRYYQTWAGRWTSADPAGTADGLNMYRMCRNNPVTFRDSNGLLTEKEIQILMFQTRQHMSQTGKDLESVMHNILGLNGDDAAVIRSRLGNTFPEPRASTSGINEITAFEEQIEAMSMPGGSPLHIDLPSLMPENFQYPLYPDCCVELPPLTSSDTSDDDMYGVESPEMSLPEITPELMTSHFPNMSEADRQALEYIANPENFSHTLYADGTVVSFSYKRFPGRFTNNYKPDTWAFLCNFKSQEIDKGVYPYFASHVAQYQYLLAAVSGGWVGQMPSTLIRKNVINKDTIANTAGLKGEQLMSAFLNNTPNGKSTAKILEAFNLNATSVKIKNTYGDVNFYVNLKRK
>NC_010067.1|WP_001255346.1|886246_887176_+|L,D-transpeptidase
MRRVTPFFLLFVLLVSHIALAISYPLPPEGSRLVGRPVTIAIPQNNTQPLEAFAARYGQGLSNMLEANPGVDVFLPESGSTLMVPQQLILPDTVREGIVVNVAEMRLYYYPEGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVWVPTANTRREYAKEGKTLPAMVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDRPVKFSLEPDGSRWLEVHEPLSRNRAEFESDNKVPLPLTPTLRTFVTGEGTDITRANEALERRSGMPVNISAGLPGH
>NC_010067.1|WP_001193987.1|885099_886164_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MQTLHALLRDIPAPDTDAMARAQQHIDGLLKPPGSLGRLEALAVQLAGMPGLNGTPQVGEKAMLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRSQAEVLLLEVIRYTCDLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPDPHDGIDVLSKVGGFDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRSYLIPSHFSAEKGARIALAHLAMEPYLHMAMRLGEGSGAALAMPIVEAACAMFHNMGELAASNIVLPGEKQT
>NC_010067.1|WP_000040011.1|884330_885074_+|adenosylcobinamide-GDP-ribazoletransferase
MSKLFWATLSFISRLPVPSRWAQGLDFEQYSRGIVMFPLIGAILGGLSGLIFILLQPWCGIPLAALFCILALALLTGGFHLDGLADTCDGIFSARRRERMLEIMRDSRLGTHGGLALIFVLLAKILVVSELALRGTPVLAALAAACAAGRGSAALLMYRHRYAREEGLGNVFIGKVSGRQTCVTLGLAAIITTVLLPGMQGLAAIVITLAAIFILGQLLKRTLGGQTGDTLGAAIELGELIFLLALL
>NC_010067.1|WP_048908555.1|910208_911675_+|type-III-secretion-effector-GogB
MKIGSQPVTLQYAYTGNEATSNLELLNKWRIESPDIEREERNSIYNKIIEANHTGSLSITARHVTSIPVFPDNLSELTLSSCYTLESIPNLPDGLKSLTISENKNIKISYFPDSLESLSIDMQAYEENYSFPTLPYGLKSFTACYGKFLPPLPPHLSSLSLQNFSEILCAELPSGLDKLDLQSCPFLPLMKMLPEGLKELSIELIRTVSDTVIDDILPEKLKKLSINFCDNIKLPVKLPANLKSINLSSMTPVVWEIPTCNLPAHIDISTDGYVKLNPEFLTRSDITFSHKSAGDALSFQPGDVVYGLCKARDRVSTLVNSLYSFSKKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREYLSQHQKYNITEDKYSDLSNEECWIKTSKAGLEFQTRLREQSVIFVVDNLVDAISDIANKKGKHGNAITAHELRWVYRNRHDDLVKQNVKFFLNGKAISHEDIFSLVGWEQYKPKNGV
>NC_010067.1|WP_000280762.1|912805_913576_+|N-acetylmuramoyl-L-alanine-amidase
MYLIDYNSYRSVKGFNRRVRFLVMHYTSIDFKASIAALTGASVSAHYLVPDPSEKTYIAAGFKDMRIFNLVDENERAWHAGVSSWAGRSNLNDTSIGIEMVNLASDNNGVFVFPPYNPVLIDAIKELAANILQRYPDITPVNVVGHSDIAPGRKSDPGAAFPWKELYDAGIGAWYEESTMQHYLKQFSKSVPSKTEIVAKLKAYGYGISDAGTEIGYKNLIRTFQLHFRQKNYDGVADAETAAILYALVDKYFPAK
>NC_010067.1|WP_000598912.1|915403_916159_+|DgsA-anti-repressor-MtfA
MIKWPWKAQEITQNADWLWDDALAIPLLVNLTAQEQARLIALAERFLQQKRLVALQGVELDSLKSARIALIFCLPILELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGDRASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGENAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCQFYRQDPSQRLR
>NC_010067.1|WP_077905528.1|916555_917023_+|DUF4102-domain-containing-protein
MPLTDTKVKNAKPLDKEYKLTDGFGMFLRVTPKGSKYWQMAYRFDGKQKIFSIGVYPTVSLADARQRRDEAKRLLAQGIDPNAKKQAEVKELKAKRDNTRSFKSVTKAWFSTKKKWSEDYRHTVLNRLETYIFPDIGNRDITELATGDLLVPIKK
>NC_010067.1|WP_012210021.1|917067_917343_+|hypothetical-protein
MTSILRYAVQQQLIRYNPAYDLEGSIQKPETEHRPALELEEIPLLLERIDAYKGRRLTTLAIQLNLLVFVRSSELRFARWSEIGNVPVNSP
>NC_010067.1|WP_012210022.1|917377_918949_-|IS66-family-transposase
MNICAGKRIISGMDITELLSTNDPDTLRQLALSLLEENRKKDASLSEKDHQIHLMREALMLARQQRFDRQAESFSGLQCSLFEEDADADIASAETQLARLLPEPEEKKARPVRKILPEHLVREETVIGPDSCACPDCGQPLRHIRDEISERLDYIPAQFVVKRYVRPQYGCEGCQRVVSGRLPAQIIPKGIPEPGLVAQVLVSKFCDRQPLYHQQQVFARAGVELPVSTLAGWVGTACVWLMPLAELLRTELLSRPVLHADETPLQILNTKKDGKAQNGYLWAYVSGETTGDSVVCFDCQPGRAARYPEAWLAGWSGTLVTDGYAVYHSLKNGGSIINAGCWAHARRGFAALYKANRDPHAGTALKMIHGLYSLEKKIRHRSPEKIRQWRQRYAKPQLDALWAWLTSQAQKCAPDSALHKAIKYVLSHKMELSRFVDDGALPLDNNRCERAIRQVVMGRNTWLFAGSLQAGHRAAAVMGLLETARLNGVEPYGWLKLVLERLPSLPEERLHELLPFAKNPLNN
>NC_010067.1|WP_000917216.1|918976_919312_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLKPEQLFLVRHPVDMRCGIDVLTMYVQNSLSMPWHDGAAFLFTNKNRTRIKLLRWDRHGVWLCARRLHRGRFIWPRDGDSTWSLTPEQFDWLVSGIDWQKMSGHNLTKWT
>NC_010067.1|WP_012210023.1|919298_919613_-|hypothetical-protein
MTTHHTTTQKAQHVRDWRASGLTRLQYCRLHGLSSHAFHKWLRLPDDGVSVTDNPVLLPVCILPSPEPAPPDSLITLHLPGGYRIDCLPAQLPDVLRAVKHAEA
>NC_010067.1|WP_149022077.1|919601_919805_+|hypothetical-protein
MSGHVIASGDRHDHDATGLKKFENVSSPERYKQSINQPLSIVKIDQYKYIDLLYQLIDGDGVRRFTG
>NC_010067.1|WP_001007311.1|919953_920442_+|type-VI-secretion-system-tube-protein-Hcp
MAIPVYLWLEDDGGAPIKGSVDVNGREGSIEVSELMHSVEQPTDPLTGKATAKRLHSSYAFMKSVDNSSAYLYKALSSGQTLKKAVFKFYRINYNGQEEEYFRTTLENVKVTEIEPFMMDIKNPQWERHDHLEYVDLAYEKITWHYLDGNIIHSDSWKGRAA

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Crispr_ID: NC_010067_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010067_2

2586067-2586161

Orphan

Consensus_repeat	Method
TGGACAATCGTTGGACATCCGTTGGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010067_2

>merge|NC_010067|2|2586067-2586161|CRISPRCasFinder
TGGACAATCGTTGGACATCCGTTGGACAACATTCGCTGTGAGCCGCGTCATTACTGGTGTTTACGTTGGACAATCGTTGGACATCCGTTGGACAA

>NC_010067|2|1|2586067-2586161|CRISPRCasFinder
TGGACAATCGTTGGACATCCGTTGGACAA	CATTCGCTGTGAGCCGCGTCATTACTGGTGTTTACGT
TGGACAATCGTTGGACATCCGTTGGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010067.1\|WP_000198432.1\|2589983_2590346_+\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_000361564.1\|2592040_2592154_+\|host-cell-division-inhibitory-peptide-Kil	unknown	unknown	gnl\|CDD\|310716
NC_010067.1\|WP_001199269.1\|2591907_2592048_+\|protease-FtsH-inhibitory-lysogeny-factor-CIII	unknown	unknown	gnl\|CDD\|280268
NC_010067.1\|WP_001532928.1\|2588319_2589399_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371127
NC_010067.1\|WP_000334040.1\|2582058_2582241_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_000159805.1\|2590423_2591704_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NC_010067.1\|WP_000024177.1\|2582679_2582916_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_000424166.1\|2586729_2587008_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|336083
NC_010067.1\|WP_000250476.1\|2587448_2588159_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NC_010067.1\|WP_001185536.1\|2582228_2582699_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_001254241.1\|2583075_2583258_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NC_010067.1\|WP_001005947.1\|2583893_2584157_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_001180316.1\|2587143_2587371_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|379154
NC_010067.1\|WP_001125981.1\|2586548_2586695_-\|DUF2740-domain-containing-protein	unknown	unknown	gnl\|CDD\|287804
NC_010067.1\|WP_000834173.1\|2589438_2589642_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_001047572.1\|2581297_2582062_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NC_010067.1\|WP_000131487.1\|2584230_2585667_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NC_010067.1\|WP_001291852.1\|2583690_2583891_-\|hypothetical-protein	unknown	unknown	unknown
NC_010067.1\|WP_000566851.1\|2582908_2583079_-\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NC_010067.1\|WP_001154848.1\|2583265_2583688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057

Protein	Function_ID	Function_description	E-value
NC_010067.1\|WP_000361564.1\|2592040_2592154_+\|host-cell-division-inhibitory-peptide-Kil	gnl\|CDD\|310716	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein. This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene.	8.93356e-07
NC_010067.1\|WP_001199269.1\|2591907_2592048_+\|protease-FtsH-inhibitory-lysogeny-factor-CIII	gnl\|CDD\|280268	pfam02061, Lambda_CIII, Lambda Phage CIII. The CIII protein from bacteriophage lambda is an inhibitor of the FtsH peptidase.	5.12078e-21
NC_010067.1\|WP_001532928.1\|2588319_2589399_+\|hypothetical-protein	gnl\|CDD\|371127	pfam10546, P63C, P63C domain. This domain was identified by Iyer and colleagues.	2.57574e-14
NC_010067.1\|WP_000159805.1\|2590423_2591704_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	3.55869e-15
NC_010067.1\|WP_000424166.1\|2586729_2587008_-\|transcriptional-regulator	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	2.09406e-42
NC_010067.1\|WP_001125981.1\|2586548_2586695_-\|DUF2740-domain-containing-protein	gnl\|CDD\|287804	pfam10872, DUF2740, Protein of unknown function (DUF2740). This family of proteins with unknown function has a highly conserved sequence.	5.85578e-19
NC_010067.1\|WP_001254241.1\|2583075_2583258_-\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	1.40604e-24
NC_010067.1\|WP_001180316.1\|2587143_2587371_-\|transcriptional-regulator	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	7.57366e-05
NC_010067.1\|WP_000566851.1\|2582908_2583079_-\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	3.44838e-12
NC_010067.1\|WP_001154848.1\|2583265_2583688_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	8.87712e-75
NC_010067.1\|WP_000131487.1\|2584230_2585667_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NC_010067.1\|WP_000250476.1\|2587448_2588159_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	6.91053e-27
NC_010067.1\|WP_001047572.1\|2581297_2582062_-\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	1.36465e-22

>NC_010067.1|WP_000131487.1|2584230_2585667_-|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEIIRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGKQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKTALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNMAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRELEKRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYYIQENGAIYDTDQQSAEMRRREREEPQAKKKGGF
>NC_010067.1|WP_001005947.1|2583893_2584157_-|hypothetical-protein
MNESYRQFEDWWSKDKSQFTDDDELKNFSWVIWQASRAAIEIELPTKNDISDDDYPIPDLVDWDDGRNAGIQECAEAIRAAGIKVKE
>NC_010067.1|WP_001291852.1|2583690_2583891_-|hypothetical-protein
MSEKTVTLTRRQFRHLCDALINTVNMGQQFMAISTDGSEMSDKAFYQAQLLRQAIERQLKVATDGR
>NC_010067.1|WP_001154848.1|2583265_2583688_-|hypothetical-protein
MQEFILHETNKSQFWLVLKQILSTGKRWRIKISEYREKRSLPQNSLMWKWNTEIADQLSATGVDRFTDEEVHEWLKDMYCPATPVTVFGMTRYVKSTRQLDIGEMHKYLTDIDQWAHQKGLRLTIPDNCEYLDLKRRQEE
>NC_010067.1|WP_001254241.1|2583075_2583258_-|NinE-family-protein
MRRQRRSITDIICENCKYLPTKRSRNKPNPIPQESDVKTFNYTAHLWDIRWLRERARKAR
>NC_010067.1|WP_000566851.1|2582908_2583079_-|protein-ninF
MIDPNRSYEQESIARALCAGCNKQLAPDEIYACAECVNEWLVYRDPHSDMTGDKDG
>NC_010067.1|WP_000024177.1|2582679_2582916_-|hypothetical-protein
MANTNMYSPNEQDYIRRVAGKVPADVMASTIGRTRNSLVNWANRHGISLRVPYGILKKHWPEYAEKMTKGGRNGTKER
>NC_010067.1|WP_001185536.1|2582228_2582699_-|hypothetical-protein
MALKRDKFDDVFSQLVRERTDWQCDYCGRTFHHERQKLHCSHFKSRRHKATRYHPYNAFAHCIGCHRKLEEDPYEFTAHAEIVYGEMTIERVARLACIPVHLKPWQMDELYQHMNSELKRLQELRAHGVTGRIDFTLPDWYQDGIQLHMGESQCAA
>NC_010067.1|WP_000334040.1|2582058_2582241_-|hypothetical-protein
MCGITSINQAKQQRERDEAELRSVREMTEQHQKAMDYLHERERELVNRIGLNNPAGGDAA
>NC_010067.1|WP_001047572.1|2581297_2582062_-|antitermination-protein
MNLENVVKFHFAKSSQINDIPRATASETLTGTDVMAAMGMTQSRASLGYSAFLGKMEISSNDREKAIELLTAYALKNCDNVPALRKLENDIKPKVMQVLATFAFSDYSRSAASTRTCDCCGGKKFIDAEVMTMKSIGQPYLSERKETVKVLCNKCKGKGVLTNACQCNGKGVVIDKEKTILQGGVPAYKTCRRCNGRGYARLLPDSVRKYICATVIDIPETTWRRSYKDFFESLVGECIKQEEYANQMLSKVTQ
>NC_010067.1|WP_001125981.1|2586548_2586695_-|DUF2740-domain-containing-protein
MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRKGHE
>NC_010067.1|WP_000424166.1|2586729_2587008_-|transcriptional-regulator
MELTSTRKKANAITSSILNRIAIRGQRKVADALGINESQISRWKGDFIPKMGMLLAVLEWGVEDEELAELAKKVAHLLTKEKAPKNGEFFEA
>NC_010067.1|WP_001180316.1|2587143_2587371_-|transcriptional-regulator
MQNLDEPIKGIGIPEVARACGVSERAVYKWLKNGFLPKTEFFGKTRYASKIEEISGGKFQAVDLLEISKKNLLSA
>NC_010067.1|WP_000250476.1|2587448_2588159_+|helix-turn-helix-transcriptional-regulator
MVQNEKVRQEFAQRLAQACKEAGLDEHGRGIAIARALDVSSKGVSKWFNAESLPRQEKMNALANFLKVDVVWLQHGSVRQSTTTDPQSLTFVGQLRKGLVRVVGEAILGVDGAIEMTEERDGWLKIYSDDPEAFGLRVKGDSMWPRIKSGEYVLIEPNTKVCPGDEVFVRTIEGHNMIKVLGYDRDGEYQFTSINQDHRPITLPYYEVSKVEYVAGILKQSRHLDDIEAREWLRNN
>NC_010067.1|WP_001532928.1|2588319_2589399_+|hypothetical-protein
MQAHFTTKSACIMSDKESKEPTGKSKGGVARANALSAEERSAIARKAAAARWGGDGEVEIAKRSGDIVIGDLKIQCAVLEDGTRVLSERAITKAFGGKRGGSHWKRMKENPDGAYLPVFLSAKNIKPFINNELSEGLSRRRLFKINKGAAPAYGIEASLLPKICNVYLKMRDQGDALQSSQIPISVQADIIMRGLAEVGIVALVDEATGHIDEKRQDEYRILFQEFIKEQVREYEKEFPKQFTDGLYRLYGLTQKKAGRHPQFFGKFTRKYIYEPLASSKGAILEMLDEKNPVVYANGGRRYKMFQFLTDSIGVPMFRAHLWQVVGILSSSRNKAEFDRAFKRAFPSPGTQFELLDEDE
>NC_010067.1|WP_000834173.1|2589438_2589642_-|hypothetical-protein
MKSEEEFFAELHPQVVEVLGIALMQVLVEQREPSREALIEMIQVLWQEEDVDLAVELAIDVLTLPKE
>NC_010067.1|WP_000198432.1|2589983_2590346_+|hypothetical-protein
MTRRTAFNGSAAGRRRERRAALQNAVTASSEVLHRPTLSRVQIQAKGKHETPKRIEDAKSLQFMAKDAFWQLEEYRRHLERAAIVYANEFGHKPPETGVCLPEVALYAAGHRKCRQVTAR
>NC_010067.1|WP_000159805.1|2590423_2591704_+|hypothetical-protein
MTKESVTFKGFNKDLKCRGFQFAIGETFHHDGKVEACGSGFHACECPFDVFSYYPPSESRYAETISFGVTDREEGGDTKIASASITIKAELTLPQFIQRGIEWIWSKIDKSLEQQIMTGYRSAATNTGNQSAATNTGYRSAATNTGNQSAATNTGDQSAATNTGNWSAATNTGNRSAATNTGDQSAATNTGNWSAATNTGNRSAATNTGNQSAATNTGYRSAATNTGNWSAATNTGYRSAATNTGNQSAATNTGDQSAATNTGNWSAATNTGYRSAATNTGNWSAATNTGYRSAATNTGNQSAATNTGDQSAATNTGNWSAATNTGYRSAATNTGNWSAATNTGDQSAATNTGYQSAAEVSGSQSVAASLGIEGKARASEGGAIVLCYRDEDGELIHIRASKVGENGIMPDTWYQLDEDGEFVECE
>NC_010067.1|WP_001199269.1|2591907_2592048_+|protease-FtsH-inhibitory-lysogeny-factor-CIII
MQYHFAGWPIAGCPSESLLDRITRKLRTGWKRLVDILNQPGVPCNG
>NC_010067.1|WP_000361564.1|2592040_2592154_+|host-cell-division-inhibitory-peptide-Kil
MDKSLMAIQSKFAIAVYLGDKIMYREAVEAFREWRLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010067_1	1.6\|908445\|19\|NC_010067\|CRT	908445-908463	19	NC_010067.1	196301-196319	0	1.0
NC_010067_1	1.7\|908505\|19\|NC_010067\|CRT	908505-908523	19	NC_010067.1	1047742-1047760	1	0.947
NC_010067_1	1.9\|908625\|19\|NC_010067\|CRT	908625-908643	19	NC_010067.1	1047502-1047520	1	0.947
NC_010067_1	1.1\|908145\|19\|NC_010067\|CRT	908145-908163	19	NC_010067.1	501321-501339	2	0.895
NC_010067_1	1.1\|908145\|19\|NC_010067\|CRT	908145-908163	19	NC_010067.1	709522-709540	2	0.895
NC_010067_1	1.2\|908205\|19\|NC_010067\|CRT	908205-908223	19	NC_010067.1	1048042-1048060	2	0.895
NC_010067_1	1.3\|908265\|19\|NC_010067\|CRT	908265-908283	19	NC_010067.1	196601-196619	2	0.895

1. spacer 1.6|908445|19|NC_010067|CRT matches to position: 196301-196319, mismatch: 0, identity: 1.0

catctaccgacagctcccg	CRISPR spacer
catctaccgacagctcccg	Protospacer
*******************

2. spacer 1.7|908505|19|NC_010067|CRT matches to position: 1047742-1047760, mismatch: 1, identity: 0.947

taaaggcccacagcttaca	CRISPR spacer
tataggcccacagcttaca	Protospacer
** ****************

3. spacer 1.9|908625|19|NC_010067|CRT matches to position: 1047502-1047520, mismatch: 1, identity: 0.947

cagcgaaaatcagctcctg	CRISPR spacer
cagcgacaatcagctcctg	Protospacer
****** ************

4. spacer 1.1|908145|19|NC_010067|CRT matches to position: 501321-501339, mismatch: 2, identity: 0.895

caaacaccaccagctcctc	CRISPR spacer
caaacaccaccagttcgtc	Protospacer
*************.** **

5. spacer 1.1|908145|19|NC_010067|CRT matches to position: 709522-709540, mismatch: 2, identity: 0.895

caaacaccaccagctcctc	CRISPR spacer
caaagaccaccagctcatc	Protospacer
**** *********** **

6. spacer 1.2|908205|19|NC_010067|CRT matches to position: 1048042-1048060, mismatch: 2, identity: 0.895

tagtggcccatagcgactg	CRISPR spacer
tagtggcccacagcgtctg	Protospacer
**********.**** ***

7. spacer 1.3|908265|19|NC_010067|CRT matches to position: 196601-196619, mismatch: 2, identity: 0.895

gagataccgacagtttctg	CRISPR spacer
gagagaccgacagttcctg	Protospacer
**** **********.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15039-15075	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	CP051278	Salmonella phage ST-87, complete genome	25848-25884	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	CP051288	Salmonella phage ST-29, complete genome	38690-38726	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31677-31713	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	CP051285	Salmonella phage ST-32, complete genome	31784-31820	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	NC_004348	Enterobacteria phage ST64T, complete genome	14879-14915	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	MW013503	Salmonella virus L cII-101, complete genome	31678-31714	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	NC_014900	Salmonella phage ST160, complete genome	15107-15143	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14879-14915	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14774-14810	2	0.946
NC_010067_2	2.1\|2586096\|37\|NC_010067\|CRISPRCasFinder	2586096-2586132	37	CP051272	Salmonella phage SW-70, complete genome	35832-35868	2	0.946

1. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

2. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

3. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

4. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.****************************.***

5. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

6. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.****************************.***

7. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.****************************.***

8. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

9. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.****************************.***

10. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
catttgctgtgagccgcgtcattactggtgtttgcgt	Protospacer
****.****************************.***

11. spacer 2.1|2586096|37|NC_010067|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.946

cattcgctgtgagccgcgtcattactggtgtttacgt	CRISPR spacer
cattcgctgtgatccgcgtcattactggtgtttgcgt	Protospacer
************ ********************.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2441567 : 2512001

Bacillus_phage(30.0%)

bacteriocin,plate,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000667327.1\|2441567_2442695_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.5e-90	46.1
WP_001266539.1\|2442748_2443819_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001009853.1\|2443912_2444494_+	ACP phosphodiesterase	NA	NA	NA	NA
WP_000244728.1\|2444703_2445306_+	peroxiredoxin	NA	NA	NA	NA
WP_000930698.1\|2445377_2447195_-	maltodextrin glucosidase	NA	NA	NA	NA
WP_038397817.1\|2447357_2448728_-	proline-specific permease ProY	NA	NA	NA	NA
WP_000893650.1\|2450529_2451825_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	2.0e-27	31.1
WP_000113922.1\|2451894_2452584_-	phosphate response regulator transcription factor PhoB	W8CYM9	Bacillus_phage	2.6e-37	38.0
WP_001221241.1\|2452796_2453999_+	exonuclease subunit SbcD	R4JGS2	Bacillus_phage	9.7e-08	37.5
WP_000698980.1\|2453995_2457136_+	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	7.9e-09	23.8
WP_000755613.1\|2457308_2458481_+	MFS transporter AraJ	NA	NA	NA	NA
WP_001219285.1\|2458502_2459411_-	fructokinase	NA	NA	NA	NA
WP_000964305.1\|2459536_2460448_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	7.1e-104	63.6
WP_000941948.1\|2460485_2460770_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_001276439.1\|2460840_2461518_-	AroM family protein	NA	NA	NA	NA
WP_001143160.1\|2461769_2461961_-	protein YaiA	NA	NA	NA	NA
WP_000983575.1\|2461987_2462533_-	shikimate kinase AroL	NA	NA	NA	NA
WP_000158141.1\|2462717_2463173_-	YaiI/YqxD family protein	NA	NA	NA	NA
WP_000412184.1\|2463312_2464122_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_000705167.1\|2465337_2465658_-	phosphate starvation-inducible protein PsiF	NA	NA	NA	NA
WP_000245163.1\|2466010_2466277_-	anti-adapter protein IraP	NA	NA	NA	NA
WP_012210446.1\|2466567_2467779_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_012210447.1\|2467947_2468661_-	extensin	NA	NA	NA	NA
WP_001096583.1\|2468738_2469833_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_001239238.1\|2469858_2470074_-	DUF2754 family protein	NA	NA	NA	NA
WP_000763138.1\|2470342_2470651_+	DUF2755 family protein	NA	NA	NA	NA
WP_000108909.1\|2470688_2471783_-	surface-exposed outer membrane lipoprotein YaiW	NA	NA	NA	NA
WP_000477013.1\|2471797_2473018_-	peptide antibiotic transporter SbmA	NA	NA	NA	NA
WP_000830789.1\|2473364_2474522_+	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	A0A2H4JAN9	uncultured_Caudovirales_phage	1.9e-05	22.7
WP_000130720.1\|2475262_2476237_+	porphobilinogen synthase	NA	NA	NA	NA
WP_000010203.1\|2476363_2478250_-	propionate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.7e-54	29.2
WP_000107272.1\|2478290_2479742_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA
WP_001285881.1\|2479781_2480951_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_000052232.1\|2481062_2481947_-	methylisocitrate lyase	NA	NA	NA	NA
WP_000246127.1\|2482212_2483838_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_000848028.1\|2483909_2484185_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000433135.1\|2484415_2485048_+	LysE family transporter	NA	NA	NA	NA
WP_012210450.1\|2485104_2485236_-	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_000151035.1\|2485235_2486246_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000393702.1\|2486242_2487646_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_000933133.1\|2487762_2487864_-	hypothetical protein	NA	NA	NA	NA
WP_001023602.1\|2488140_2491110_-	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	1.2e-83	26.3
WP_000910346.1\|2491122_2493081_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	1.3e-78	31.8
WP_000288495.1\|2493269_2494523_-	MFS transporter	NA	NA	NA	NA
WP_000545338.1\|2496868_2497762_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001000311.1\|2497764_2499450_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_012210455.1\|2499650_2499869_-	hypothetical protein	NA	NA	NA	NA
WP_000835379.1\|2499892_2501056_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_001154293.1\|2501065_2501911_-	hypothetical protein	NA	NA	NA	NA
WP_000157768.1\|2501943_2502885_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_000866756.1\|2502895_2503645_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_134940432.1\|2504475_2504565_-	hypothetical protein	NA	NA	NA	NA
WP_000375391.1\|2505950_2506400_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000095318.1\|2506482_2506776_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_052304240.1\|2506747_2508079_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001209969.1\|2508185_2508449_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000127331.1\|2508555_2508819_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000977990.1\|2509269_2509638_-	hypothetical protein	NA	NA	NA	NA
WP_000301354.1\|2509724_2510504_-	hypothetical protein	NA	NA	NA	NA
WP_001211319.1\|2511551_2512001_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

2519857 : 2647458

118

Salmonella_phage(52.24%)

protease,plate,transposase,coat,bacteriocin,terminase,integrase,lysis,holin,portal

attL 2560693:2560740|attR 2599791:2599838

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141024402.1\|2519857_2520181_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000371003.1\|2520158_2523749_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_000246898.1\|2523753_2524278_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000090424.1\|2524313_2525396_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000342473.1\|2525359_2527129_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000097911.1\|2527162_2528770_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_149022081.1\|2528817_2529717_-	hypothetical protein	NA	NA	NA	NA
WP_000679281.1\|2529749_2530934_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_001079319.1\|2530989_2532003_-	hypothetical protein	S5WA20	Leptospira_phage	1.5e-06	22.6
WP_001151320.1\|2532005_2535377_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_001144697.1\|2535369_2536578_-	hypothetical protein	NA	NA	NA	NA
WP_024131989.1\|2536580_2536844_-	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.8e-07	54.0
WP_000064654.1\|2536987_2537500_-	hypothetical protein	NA	NA	NA	NA
WP_012210483.1\|2543014_2543278_-	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	6.1e-08	56.0
WP_149022082.1\|2543410_2544241_-	hypothetical protein	NA	NA	NA	NA
WP_000125550.1\|2544272_2547371_-	glycoside hydrolase family protein	A0A0M5M782	Salmonella_phage	5.2e-13	38.8
WP_000093954.1\|2547386_2549744_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_000399947.1\|2549740_2552413_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.7e-93	32.5
WP_001007312.1\|2552576_2553068_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001254769.1\|2553070_2554750_-	OmpA family protein	NA	NA	NA	NA
WP_001248376.1\|2554749_2555439_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000708640.1\|2555435_2556785_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000115426.1\|2556797_2558339_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000785632.1\|2558380_2558878_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_134949391.1\|2559424_2560524_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-47	42.2
2560693:2560740	attL	NA	NA	NA	NA
WP_001097570.1\|2561275_2562277_+	acyltransferase family protein	S5FNR8	Shigella_phage	3.5e-27	30.5
WP_001112908.1\|2562293_2564444_-	hypothetical protein	A0A193GYB8	Enterobacter_phage	3.0e-129	43.6
WP_001029863.1\|2564615_2566613_-	hypothetical protein	Q716G2	Shigella_phage	0.0e+00	95.3
WP_000190213.1\|2566612_2567986_-	Putative DNA transfer protein p33	A0A1R3Y5Q4	Salmonella_virus	3.0e-215	88.8
WP_000964893.1\|2567995_2568685_-	hypothetical protein	B9UDK9	Salmonella_phage	1.2e-90	85.2
WP_000627704.1\|2568687_2569143_-	DUF2824 family protein	A0A1R3Y5P3	Salmonella_virus	3.9e-87	99.3
WP_000774928.1\|2569142_2569844_-	hypothetical protein	A0A192Y6T9	Salmonella_phage	2.9e-73	96.6
WP_001122358.1\|2569847_2571266_-	Packaged DNA stabilization protein gp10	I1TEJ1	Salmonella_phage	1.7e-266	95.6
WP_001166095.1\|2571225_2571726_-	Putative packaged DNA stabilization protein p27	Q76H19	Enterobacteria_phage	8.2e-86	95.8
WP_000684729.1\|2571709_2571919_-	hypothetical protein	A0A192Y697	Salmonella_phage	1.3e-32	100.0
WP_000907908.1\|2571957_2573253_-\|coat	coat protein	A0A0M5M1J5	Salmonella_phage	4.2e-243	99.5
WP_000433854.1\|2573252_2574164_-	scaffold protein	A0A192Y6T4	Salmonella_phage	1.7e-158	98.7
WP_000774648.1\|2574177_2576355_-\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.5
WP_000417863.1\|2576354_2577854_-\|terminase	terminase	A0A192Y824	Salmonella_phage	9.1e-306	99.4
WP_000729924.1\|2577831_2578320_-	hypothetical protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
WP_000626465.1\|2578343_2578523_-	hypothetical protein	A0A2H4A350	Salmonella_phage	2.7e-23	93.1
WP_000807783.1\|2578524_2578767_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	8.3e-36	97.5
WP_001058931.1\|2578980_2579466_-	GIY-YIG nuclease family protein	C6ZR70	Salmonella_phage	8.5e-88	100.0
WP_000086781.1\|2579673_2580111_-\|lysis	lysis protein	A0A0N6WGE8	Salmonella_phage	3.8e-71	96.6
WP_001167370.1\|2580107_2580545_-	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
WP_000738702.1\|2580531_2580855_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	6.5e-52	100.0
WP_001047572.1\|2581297_2582062_-	antitermination protein	Q5G8R6	Enterobacteria_phage	3.0e-140	97.2
WP_000334040.1\|2582058_2582241_-	hypothetical protein	C6ZR61	Salmonella_phage	5.5e-24	95.0
WP_001185536.1\|2582228_2582699_-	hypothetical protein	C6ZR60	Salmonella_phage	1.1e-87	94.9
WP_000024177.1\|2582679_2582916_-	hypothetical protein	C6ZR59	Salmonella_phage	9.9e-34	87.2
WP_000566851.1\|2582908_2583079_-	protein ninF	I6R994	Salmonella_phage	1.3e-22	85.2
WP_001254241.1\|2583075_2583258_-	NinE family protein	C6ZR57	Salmonella_phage	9.1e-27	93.3
WP_001154848.1\|2583265_2583688_-	hypothetical protein	A0A2H4FNF5	Salmonella_phage	3.7e-79	100.0
WP_001291852.1\|2583690_2583891_-	hypothetical protein	A0A2H4FUS3	Salmonella_phage	1.4e-28	98.5
WP_001005947.1\|2583893_2584157_-	hypothetical protein	I6R992	Salmonella_phage	3.2e-25	65.5
WP_000131487.1\|2584230_2585667_-	AAA family ATPase	K7PGR8	Enterobacteria_phage	4.2e-268	97.9
WP_000065660.1\|2585656_2586556_-	hypothetical protein	A0A220NQX5	Salmonella_phage	4.5e-151	97.0
WP_001125981.1\|2586548_2586695_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
WP_000424166.1\|2586729_2587008_-	transcriptional regulator	A0A220NRS4	Escherichia_phage	2.2e-40	93.5
WP_001180316.1\|2587143_2587371_-	transcriptional regulator	G9L677	Escherichia_phage	2.1e-33	89.3
WP_000250476.1\|2587448_2588159_+	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	4.0e-118	87.7
WP_001532928.1\|2588319_2589399_+	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
WP_000834173.1\|2589438_2589642_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	1.0e-26	98.5
WP_000198432.1\|2589983_2590346_+	hypothetical protein	C6ZR44	Salmonella_phage	2.3e-58	95.0
WP_000159805.1\|2590423_2591704_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	1.2e-61	92.0
WP_001199269.1\|2591907_2592048_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.5e-18	84.8
WP_000361564.1\|2592040_2592154_+	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
WP_001552364.1\|2592150_2592339_+	hypothetical protein	C6ZR38	Salmonella_phage	1.3e-28	100.0
WP_000365268.1\|2592347_2593055_+	recombinase	A0A2H4FN95	Salmonella_phage	5.1e-134	96.6
WP_001253480.1\|2593054_2593339_+	anti-RecBCD protein 1	Q76H41	Enterobacteria_phage	5.7e-44	96.8
WP_001111293.1\|2593385_2593679_+	DUF2856 family protein	A0A0N7CAQ6	Salmonella_phage	2.1e-49	97.9
WP_001214434.1\|2593689_2593860_+	DUF2737 family protein	A0A0N7CAQ8	Salmonella_phage	3.5e-25	100.0
WP_001188044.1\|2593847_2594354_+	hypothetical protein	A0A0N6WGF1	Salmonella_phage	5.1e-59	70.2
WP_000065084.1\|2594462_2594822_+	hypothetical protein	T1SA95	Salmonella_phage	1.7e-61	94.1
WP_000065097.1\|2594818_2595478_+	ead/Ea22-like family protein	Q5G8U8	Enterobacteria_phage	5.4e-45	72.7
WP_000323590.1\|2595751_2595937_+	hypothetical protein	NA	NA	NA	NA
WP_000208078.1\|2595940_2596366_+	HNH endonuclease	C6ZR29	Salmonella_phage	3.0e-65	84.6
WP_000509169.1\|2597523_2597790_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	3.7e-45	97.7
WP_001281206.1\|2598034_2598385_+	hypothetical protein	I6R980	Salmonella_phage	1.2e-59	98.3
WP_012210492.1\|2598614_2599778_+\|integrase	site-specific integrase	Q5G8V5	Enterobacteria_phage	9.4e-226	98.7
WP_000893242.1\|2599984_2601235_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	46.2
2599791:2599838	attR	NA	NA	NA	NA
WP_001285294.1\|2601246_2602350_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-61	40.1
WP_000749851.1\|2602632_2603685_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.0e-113	58.4
WP_000174697.1\|2603736_2604138_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189580.1\|2604195_2605440_-	esterase FrsA	NA	NA	NA	NA
WP_001292018.1\|2605528_2605987_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001292968.1\|2606232_2607690_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001226149.1\|2607949_2609005_-	DNA polymerase IV	NA	NA	NA	NA
WP_001225661.1\|2609256_2609997_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333390.1\|2609967_2610735_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284051.1\|2610810_2611389_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.3e-13	30.8
WP_000973033.1\|2611628_2614073_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000015777.1\|2614182_2614950_+	amidohydrolase	NA	NA	NA	NA
WP_000788196.1\|2615111_2615519_+	hypothetical protein	NA	NA	NA	NA
WP_000787598.1\|2616534_2617257_+	adhesin/invasin protein PagN	NA	NA	NA	NA
WP_000998119.1\|2618085_2619468_-	hypothetical protein	NA	NA	NA	NA
WP_000113964.1\|2619514_2620759_-	chromosome segregation ATPase	Q9MC01	Enterobacteria_phage	1.2e-80	63.3
WP_024131994.1\|2620837_2621236_-	hypothetical protein	NA	NA	NA	NA
WP_000004546.1\|2621842_2622295_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_024131995.1\|2622287_2622824_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000553779.1\|2622804_2623908_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000389893.1\|2623862_2625626_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001114733.1\|2625647_2626178_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000039767.1\|2626240_2626972_-	hypothetical protein	NA	NA	NA	NA
WP_001040141.1\|2628597_2632005_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_000118268.1\|2631991_2633149_-	hypothetical protein	NA	NA	NA	NA
WP_000033409.1\|2633152_2633419_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_001046388.1\|2633448_2634303_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	1.1e-13	29.5
WP_000528468.1\|2634308_2636534_-	hypothetical protein	NA	NA	NA	NA
WP_000059650.1\|2636578_2639092_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_103143138.1\|2639169_2639397_-	hypothetical protein	NA	NA	NA	NA
WP_065304584.1\|2639396_2639738_-	hypothetical protein	NA	NA	NA	NA
WP_000152197.1\|2639854_2640424_-	hypothetical protein	NA	NA	NA	NA
WP_048908631.1\|2640438_2643087_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.3e-94	32.4
WP_001007318.1\|2643249_2643741_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_048908632.1\|2643745_2645374_-	OmpA family protein	NA	NA	NA	NA
WP_001097692.1\|2645473_2646124_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000708633.1\|2646120_2647458_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_3

3800735 : 3815276

Enterobacteria_phage(90.91%)

integrase

attL 3804516:3804537|attR 3815437:3815458

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000131305.1\|3800735_3803462_+	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.3e-39	24.7
WP_103143127.1\|3803482_3803575_+	protein MgtR	NA	NA	NA	NA
WP_000044637.1\|3803809_3804289_+	hypothetical protein	NA	NA	NA	NA
3804516:3804537	attL	NA	NA	NA	NA
WP_000783704.1\|3804828_3807162_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.9
WP_000812955.1\|3807176_3807497_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001145745.1\|3807493_3807754_-	hypothetical protein	NA	NA	NA	NA
WP_000459329.1\|3807826_3808276_-	hypothetical protein	Q7M298	Enterobacteria_phage	4.4e-46	73.5
WP_000556706.1\|3808268_3808568_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	2.1e-28	71.7
WP_001076431.1\|3808557_3809160_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.2e-45	72.3
WP_024132085.1\|3809156_3809423_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.4e-22	61.4
WP_135060484.1\|3809434_3809620_+	ABC transporter permease	NA	NA	NA	NA
WP_000194691.1\|3809982_3810720_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	4.0e-81	65.7
WP_000984205.1\|3810716_3810962_+	transcriptional regulator	Q7M294	Enterobacteria_phage	1.6e-31	77.8
WP_000210083.1\|3810978_3811545_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.2e-56	62.2
WP_071820942.1\|3811508_3811694_-	hypothetical protein	NA	NA	NA	NA
WP_000393067.1\|3811743_3813243_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	2.6e-26	30.8
WP_000429939.1\|3813244_3813919_-	hypothetical protein	NA	NA	NA	NA
WP_000220052.1\|3813908_3814100_-	hypothetical protein	NA	NA	NA	NA
WP_001218968.1\|3814109_3815276_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.2e-206	91.2
3815437:3815458	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010067

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection